Query psy6239
Match_columns 151
No_of_seqs 123 out of 1034
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 21:19:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7u_A Arginyl-tRNA synthetase 100.0 3E-41 1E-45 285.2 17.0 151 1-151 455-607 (607)
2 2zue_A Arginyl-tRNA synthetase 100.0 9.1E-38 3.1E-42 265.2 14.3 150 1-151 473-629 (629)
3 3fnr_A Arginyl-tRNA synthetase 100.0 2.3E-34 7.8E-39 236.7 17.0 147 2-151 306-454 (464)
4 1iq0_A Arginyl-tRNA synthetase 100.0 3.2E-34 1.1E-38 242.2 16.8 146 2-151 440-592 (592)
5 4dlp_A Aminoacyl-tRNA syntheta 99.1 6.3E-10 2.1E-14 92.9 9.5 137 2-144 342-482 (536)
6 3h99_A Methionyl-tRNA syntheta 98.9 1.8E-09 6.1E-14 90.6 6.2 139 2-148 366-509 (560)
7 3kfl_A Methionyl-tRNA syntheta 98.9 1.6E-08 5.4E-13 85.0 11.2 107 2-113 360-468 (564)
8 2x1l_A Methionyl-tRNA syntheta 98.7 3.9E-07 1.3E-11 75.7 13.3 109 2-114 331-441 (524)
9 2csx_A Methionyl-tRNA syntheta 98.6 1.9E-08 6.5E-13 83.1 4.8 103 2-113 316-420 (497)
10 1li5_A Cysrs, cysteinyl-tRNA s 98.4 2.2E-06 7.4E-11 70.4 11.7 106 2-145 287-393 (461)
11 2d5b_A Methionyl-tRNA syntheta 98.1 1.3E-06 4.6E-11 72.0 2.7 103 2-113 318-422 (500)
12 1rqg_A Methionyl-tRNA syntheta 97.9 0.00015 5.1E-09 62.6 11.6 107 3-113 366-474 (722)
13 1ffy_A Isoleucyl-tRNA syntheta 97.4 0.00042 1.4E-08 61.2 8.3 132 3-144 617-757 (917)
14 3u1f_A Methionyl-tRNA syntheta 97.0 0.007 2.4E-07 50.2 10.8 106 3-113 345-452 (542)
15 2v0c_A Aminoacyl-tRNA syntheta 96.3 0.018 6.3E-07 50.6 9.4 100 3-111 659-761 (878)
16 1wkb_A Leucyl-tRNA synthetase; 96.0 0.09 3.1E-06 45.7 11.9 99 3-113 672-772 (810)
17 1ile_A Ilers, isoleucyl-tRNA s 95.8 0.054 1.9E-06 47.3 9.5 135 3-147 613-758 (821)
18 1gax_A Valrs, valyl-tRNA synth 95.7 0.11 3.7E-06 45.7 11.1 96 3-109 550-649 (862)
19 4arc_A Leucine--tRNA ligase; l 94.4 0.98 3.4E-05 39.8 13.4 97 3-108 661-759 (880)
20 1wz2_A Leucyl-tRNA synthetase; 90.9 3.5 0.00012 36.6 12.1 99 3-113 672-772 (967)
21 3c8z_A Cysteinyl-tRNA syntheta 86.5 4.1 0.00014 32.5 8.8 76 3-107 314-390 (414)
22 3tqo_A Cysteinyl-tRNA syntheta 85.6 13 0.00045 30.2 11.9 107 2-146 290-397 (462)
23 1v54_E Cytochrome C oxidase po 49.4 2.9 9.8E-05 27.3 -0.4 24 128-151 81-104 (109)
24 3pmd_A Conserved domain protei 43.0 40 0.0014 23.2 4.5 51 93-143 10-64 (153)
25 2y69_E Cytochrome C oxidase su 37.0 5.9 0.0002 27.2 -0.4 24 128-151 124-147 (152)
26 1pq1_B BCL2-like protein 11; B 31.9 51 0.0018 16.3 2.7 17 94-110 8-24 (33)
27 2o5r_A Glutamyl-tRNA synthetas 31.6 11 0.00037 30.9 0.2 29 2-30 307-335 (481)
28 1yku_A Hypothetical protein PX 25.7 1.1E+02 0.0037 20.6 4.3 50 93-142 7-60 (136)
29 2wh6_B BCL-2-like protein 11; 25.0 32 0.0011 16.1 1.1 16 94-109 8-23 (26)
30 2bhw_A Chlorophyll A-B binding 21.4 1.2E+02 0.004 22.2 4.2 28 119-146 64-91 (232)
No 1
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=3e-41 Score=285.24 Aligned_cols=151 Identities=35% Similarity=0.620 Sum_probs=139.0
Q ss_pred CcchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCC--CCCCCCCCCCHHHHHHHHHHHHh
Q psy6239 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPP--DHCDPKLLAEPVALQLILDIARF 78 (151)
Q Consensus 1 ~~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~--~~~d~~~l~~~~E~~L~~~l~~~ 78 (151)
+|||||++|+..+.++++|||+.+++|+|+||+||||||+|+|||+||+...... ...+++.+.++.|++|++.|.+|
T Consensus 455 i~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~f 534 (607)
T 1f7u_A 455 ISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQY 534 (607)
T ss_dssp HHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTH
T ss_pred HHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999998320100 12345567899999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 79 DEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 79 ~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
|+++.+++++++||.+|+||++||+.||+||++|+|++++++++.+||+|+.++++||++||.||||++|+||
T Consensus 535 p~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY~~~~Vl~~~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~perM 607 (607)
T 1f7u_A 535 PDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPVERM 607 (607)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 9999999999999999999999999999999999999988888999999999999999999999999999999
No 2
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=9.1e-38 Score=265.20 Aligned_cols=150 Identities=21% Similarity=0.333 Sum_probs=136.7
Q ss_pred CcchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCC-------CCCCCCCCCCCHHHHHHHH
Q psy6239 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQP-------PDHCDPKLLAEPVALQLIL 73 (151)
Q Consensus 1 ~~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~-------~~~~d~~~l~~~~E~~L~~ 73 (151)
++|+||++|+..+.++++|||+.+++++++|++||||+|+|+|||+||++..+. ....+. .+.++.|++|++
T Consensus 473 ~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~-~l~~~~e~~L~~ 551 (629)
T 2zue_A 473 IGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADF-TKLSERERELVI 551 (629)
T ss_dssp HHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCC-SSCCHHHHHHHH
T ss_pred hhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccc-cCCCHHHHHHHH
Confidence 379999999999999999999999999999999999999999999999854221 011122 356899999999
Q ss_pred HHHHhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 74 DIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 74 ~l~~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
.+..||+++.+++++++||.+|+|+++|+..||+||++|+|++++++++.+||+|+.++++||.+||.||||++|++|
T Consensus 552 ~l~~fp~~v~~a~~~~~p~~l~~yl~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ape~M 629 (629)
T 2zue_A 552 MLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAPERM 629 (629)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCccccC
Confidence 999999999999999999999999999999999999999999887778999999999999999999999999999999
No 3
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=2.3e-34 Score=236.74 Aligned_cols=147 Identities=18% Similarity=0.256 Sum_probs=133.7
Q ss_pred cchhHhHhhcCCCCCceeeHhHHhcccCCCHH-HHHHHHHHHHHHHhhcCCCCC-CCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDECLHMSGDGGV-KLQYSHCRLVSLAQECNAIQP-PDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~-~lqya~aR~~sIlrk~~~~~~-~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
+|+||++|+..+.++++||++.+.++.+++++ |+||+|+|++||+||+...+. .+..+++.+.++ |+.|+..+..||
T Consensus 306 dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~~~~~L~~~-e~~Ll~~L~~~~ 384 (464)
T 3fnr_A 306 DALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQD-GVNLLFEALNLK 384 (464)
T ss_dssp HHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCCCTTCCHH-HHHHHHHHHTHH
T ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCccccChhhCChH-HHHHHHHHHHHH
Confidence 58999999999999999999999999777777 699999999999999865222 123455667766 999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
+++.+++++++||.+|+|+++||..||+||++|+|++++++++.+||+|+.++ ||++||.||||+|||+|
T Consensus 385 ~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~vl~~~~~~~~aRL~L~~a~--vL~~gL~lLGi~ape~m 454 (464)
T 3fnr_A 385 AVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSLVAL--SIKTAFSLMGIEAKNKM 454 (464)
T ss_dssp HHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCCTTSTTHHHHHHHHHHHHH--HHHHHHHHTTCCCCSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHH--HHHHHHHhcCCCchHHh
Confidence 99999999999999999999999999999999999988878999999999999 99999999999999999
No 4
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=3.2e-34 Score=242.22 Aligned_cols=146 Identities=26% Similarity=0.383 Sum_probs=135.6
Q ss_pred cchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHH
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEV 81 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~ 81 (151)
+|+||++|+..+.++++||++.+.++++++++|+||+|+|++||++|+...+. + +. .+.++.|++|++.+..||++
T Consensus 440 ~aiRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~-~--~~-~l~~~~e~~L~~~l~~~~~~ 515 (592)
T 1iq0_A 440 GAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGA-P--DL-SQATPYERALALDLLDFEEA 515 (592)
T ss_dssp HHHHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCC-C--CG-GGCCHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCC-C--cc-CCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999864222 1 22 35578999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhhhc-------ccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 82 LYQAHESYDSSIVVRYLFNLTNSINKALKQL-------QVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 82 l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~-------~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
+.+++++++||.+|+|+++|++.||+||++| +|++++++++.+||+|+.+++++|.+||.||||++|++|
T Consensus 516 v~~a~~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi~~~e~M 592 (592)
T 1iq0_A 516 VLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGIPAPEVM 592 (592)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 9999999999999999999999999999999 999887778999999999999999999999999999999
No 5
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.05 E-value=6.3e-10 Score=92.88 Aligned_cols=137 Identities=8% Similarity=0.015 Sum_probs=98.6
Q ss_pred cchhHhHhh-cCCCCCceeeHhHHhcccCCCHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 2 SALIVYNLK-IRRLKSYNFNWDECLHMSGDGGV-KLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 2 ~ai~~~~L~-~~~~~~~~fd~~~~~~~~~~~~~-~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
.|+||++++ ....++++|+++.+.+..+.+.. .+.+++.|+.+++.+... +..+. . ...++.++.|+..+..++
T Consensus 342 DalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~-~~~p~--~-~~~~~~d~~ll~~l~~~~ 417 (536)
T 4dlp_A 342 DQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCE-GKVPQ--P-GAFSEADKAILDQADAAL 417 (536)
T ss_dssp HHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHST-TBCCC--C-CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCC--c-ccCCHHHHHHHHHHHHHH
Confidence 379999999 67889999999988654322222 388999999999987643 21111 1 123578899999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhccc--CCCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQV--KGTEYHVSQHRLLLFNKARLVLNQGMCVLG 144 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V--~~~~~~~~~~RL~L~~~~~~vl~~~l~llg 144 (151)
+.+.+++++++++.+++++++++..+|.|++.++. +..+. ...+...+..+..++..++.+|.
T Consensus 418 ~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k~w~l~~~~--~~~~~~~~~~l~~~l~~~~~lL~ 482 (536)
T 4dlp_A 418 ETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTD--PARMGTVLYVTAEVLRRVGIMVQ 482 (536)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCchhhcCCC--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998863 32111 12233445555555555555544
No 6
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=98.89 E-value=1.8e-09 Score=90.56 Aligned_cols=139 Identities=14% Similarity=0.051 Sum_probs=102.8
Q ss_pred cchhHhHhhcCCC--CCceeeHhHHhcccCCCHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy6239 2 SALIVYNLKIRRL--KSYNFNWDECLHMSGDGGV-KLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARF 78 (151)
Q Consensus 2 ~ai~~~~L~~~~~--~~~~fd~~~~~~~~~~~~~-~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~ 78 (151)
-|+||++++..+. ++++|+++.+.+....+-. .+.++++|+.+++++... +. +. ..+.++.|+..+..+
T Consensus 366 DalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~-~~---~~----~~~~d~~ll~~l~~~ 437 (560)
T 3h99_A 366 DSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFD-GV---LA----SELADPQLYKTFTDA 437 (560)
T ss_dssp HHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHHHST-TB---CC----SSCSCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC---CC----CccccHHHHHHHHHH
Confidence 3799999998764 6899999887642211111 266778899999988642 11 11 112456799999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhccc--CCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcC
Q psy6239 79 DEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQV--KGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPL 148 (151)
Q Consensus 79 ~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V--~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~ 148 (151)
++.+.+++++++++.+++++++++..+|.|++.++. +..+...+..+..++..+..+++.++.+|.--.|
T Consensus 438 ~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P 509 (560)
T 3h99_A 438 AEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLP 509 (560)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999998863 3333222445677778888889988888875444
No 7
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=98.87 E-value=1.6e-08 Score=84.97 Aligned_cols=107 Identities=13% Similarity=0.064 Sum_probs=86.7
Q ss_pred cchhHhHhh-cCCCCCceeeHhHHhcc-cCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 2 SALIVYNLK-IRRLKSYNFNWDECLHM-SGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 2 ~ai~~~~L~-~~~~~~~~fd~~~~~~~-~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
-|+||++++ ....++++|+++.+.+. +.+-.-+++++++|+.+++.+.+ +..+. .. -.++.++.|+..+..++
T Consensus 360 DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~--g~~p~--~~-~~~~~d~~ll~~l~~~~ 434 (564)
T 3kfl_A 360 DALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVN--GMWPE--PA-EYSESDKTLIASLNNLA 434 (564)
T ss_dssp HHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTT--SBCCC--CC-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CcCCC--CC-CCCHHHHHHHHHHHHHH
Confidence 379999999 77889999999988764 34444469999999999987332 21111 11 23577889999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcc
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQ 113 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~ 113 (151)
+.+.+++++++++.+++++++++..+|.|++.++
T Consensus 435 ~~v~~a~e~~~~~~a~~~i~~l~~~~n~Y~~~~k 468 (564)
T 3kfl_A 435 GTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENA 468 (564)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999886
No 8
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=98.67 E-value=3.9e-07 Score=75.67 Aligned_cols=109 Identities=10% Similarity=0.073 Sum_probs=84.1
Q ss_pred cchhHhHhh-cCCCCCceeeHhHHhcccCCCHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 2 SALIVYNLK-IRRLKSYNFNWDECLHMSGDGGV-KLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 2 ~ai~~~~L~-~~~~~~~~fd~~~~~~~~~~~~~-~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
.|+||++|+ ....++++|+++.+.+..+..-. .+.....|+.+++++... +..+ +.. ..++.++.|+..+..++
T Consensus 331 DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~-~~~~--~~~-~~~~~d~~l~~~l~~~~ 406 (524)
T 2x1l_A 331 DQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLG-AAVP--DPG-EFTDEDTALLAAADALL 406 (524)
T ss_dssp HHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHST-TBCC--CCC-CCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC--Ccc-ccchhHHHHHHHHHHHH
Confidence 479999998 67889999999887654321111 266777898888877432 1111 111 23577889999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhccc
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQV 114 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V 114 (151)
+.+.++.++++++.+++++++++..+|.|++.++.
T Consensus 407 ~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~ 441 (524)
T 2x1l_A 407 ERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEP 441 (524)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999998864
No 9
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=98.65 E-value=1.9e-08 Score=83.09 Aligned_cols=103 Identities=11% Similarity=0.040 Sum_probs=85.0
Q ss_pred cchhHhHhh-cCCCCCceeeHhHHhcccCCCHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 2 SALIVYNLK-IRRLKSYNFNWDECLHMSGDGGV-KLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 2 ~ai~~~~L~-~~~~~~~~fd~~~~~~~~~~~~~-~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
.|+||++++ ....++++|+++.+.+..+++.. +++++++|+.+++++... + .++ ++.++.|+..+..++
T Consensus 316 DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~-~---~~~-----~~~d~~l~~~l~~~~ 386 (497)
T 2csx_A 316 DEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLG-G---EVS-----GARDEEYAKIAQESI 386 (497)
T ss_dssp HHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHST-T---CBC-----CCCCTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C---CCC-----chhHHHHHHHHHHHH
Confidence 379999998 67889999999998776555544 499999999999988643 1 111 234567888899999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcc
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQ 113 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~ 113 (151)
+.+.++.++++++.+++++++++..+|.|++.++
T Consensus 387 ~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k 420 (497)
T 2csx_A 387 KNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQ 420 (497)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998775
No 10
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=98.44 E-value=2.2e-06 Score=70.41 Aligned_cols=106 Identities=14% Similarity=0.189 Sum_probs=84.7
Q ss_pred cchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHH
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEV 81 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~ 81 (151)
.++||++|+....++++|+++.+.+. ++++.|+.|++++.+. .++ + + .+..+++.
T Consensus 287 dalR~~ll~~~~~~~~~fs~~~l~~~--------~~~l~rl~n~~~~~~~-----~~~-----~--d-----~l~~~~~~ 341 (461)
T 1li5_A 287 ETVRYFLMSGHYRSQLNYSEENLKQA--------RAALERLYTALRGTDK-----TVA-----P--A-----GGEAFEAR 341 (461)
T ss_dssp HHHHHHHHSSCTTSCEEECHHHHHHH--------HHHHHHHHHHHTTCCT-----TSC-----C--C-----SCHHHHHH
T ss_pred HHHHHHHHcCCcCCCCCCCHHHHHHH--------HHHHHHHHHHHHHhhc-----CCC-----H--H-----HHHHHHHH
Confidence 47999999988999999999987654 6778999999987642 111 1 1 24567778
Q ss_pred HHHHH-HhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy6239 82 LYQAH-ESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGL 145 (151)
Q Consensus 82 l~~a~-~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi 145 (151)
+.++. ++++++.++.+++++++.+|+|+++ . . .++.++...|..++.+|||
T Consensus 342 ~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~-~-----~-------~~~~~~~~~~~~~~~~lG~ 393 (461)
T 1li5_A 342 FIEAMDDDFNTPEAYSVLFDMAREVNRLKAE-D-----M-------AAANAMASHLRKLSAVLGL 393 (461)
T ss_dssp HHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH-C-----H-------HHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHhc-c-----H-------HHHHHHHHHHHHHHHHcCC
Confidence 88888 8999999999999999999999976 1 1 2566667788999999999
No 11
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=98.07 E-value=1.3e-06 Score=71.96 Aligned_cols=103 Identities=12% Similarity=0.037 Sum_probs=77.6
Q ss_pred cchhHhHhh-cCCCCCceeeHhHHhcccCCCHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 2 SALIVYNLK-IRRLKSYNFNWDECLHMSGDGGV-KLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 2 ~ai~~~~L~-~~~~~~~~fd~~~~~~~~~~~~~-~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
.|+||++++ ....++++|+++.+.+..+..-. .+.....|+.++.++... + .+.. +.++.++..+..++
T Consensus 318 DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~-~---~~~~-----~~~~~l~~~l~~~~ 388 (500)
T 2d5b_A 318 DALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAE-G---RIPE-----PVAGEELAEGTGLA 388 (500)
T ss_dssp HHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHST-T---BCCC-----CCCCGGGGGGGGHH
T ss_pred HHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C---CCCc-----hhHHHHHHHHHHHH
Confidence 379999998 67889999999887654331101 156677899888877532 1 1110 01256777788899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcc
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQ 113 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~ 113 (151)
+.+.++.++++++.+++++++++..+|.|++.++
T Consensus 389 ~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k 422 (500)
T 2d5b_A 389 GRLRPLVRELKFHVALEEAMAYVKALNRYINEKK 422 (500)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998775
No 12
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=97.86 E-value=0.00015 Score=62.58 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=77.8
Q ss_pred chhHhHhhc-CCCCCceeeHhHHhcccCCCHHH-HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHH
Q psy6239 3 ALIVYNLKI-RRLKSYNFNWDECLHMSGDGGVK-LQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDE 80 (151)
Q Consensus 3 ai~~~~L~~-~~~~~~~fd~~~~~~~~~~~~~~-lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~ 80 (151)
++||++++. ...++.+|+++.+.+-.+....- +.-...|+.+.+.+.-. +..+. ...+ .+.++.|+..+..+.+
T Consensus 366 alR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~-~~~~~--~~~~-~~~d~~ll~~l~~~~~ 441 (722)
T 1rqg_A 366 YLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFD-GVVPE--RGEL-DELDREALEEIEKAFK 441 (722)
T ss_dssp HHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHST-TBCCC--CCCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCC--cccC-CHHHHHHHHHHHHHHH
Confidence 689999997 67799999998775422111111 22234788888877532 11111 1112 4677889999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcc
Q psy6239 81 VLYQAHESYDSSIVVRYLFNLTNSINKALKQLQ 113 (151)
Q Consensus 81 ~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~ 113 (151)
.+.++.++++++..++.+++++...|.|++..+
T Consensus 442 ~v~~~~e~~~f~~A~~~i~~~~~~~n~Yi~~~k 474 (722)
T 1rqg_A 442 EVGELIMNYRFKDALKRVMSLASFGNRYFDHKQ 474 (722)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998764
No 13
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=97.42 E-value=0.00042 Score=61.24 Aligned_cols=132 Identities=11% Similarity=-0.011 Sum_probs=89.6
Q ss_pred chhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCC--CCCC---CCCCCCCCCCHHHHHHHHHHHH
Q psy6239 3 ALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNA--IQPP---DHCDPKLLAEPVALQLILDIAR 77 (151)
Q Consensus 3 ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~--~~~~---~~~d~~~l~~~~E~~L~~~l~~ 77 (151)
|+||++++....++++|+.+.+... .-++.|+.|.+|.... .+.. ..++...+ .+.++.++..+..
T Consensus 617 alR~~lls~~~~~D~~fs~~~l~~~--------~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l-~~~D~~il~~l~~ 687 (917)
T 1ffy_A 617 IARLWVSSTDYLADVRISDEILKQT--------SDDYRKIRNTLRFMLGNINDFNPDTDSIPESEL-LEVDRYLLNRLRE 687 (917)
T ss_dssp HHHHHHHTSCTTSCEECCHHHHHHH--------HHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGS-CHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCcccCHHHHHHH--------HHHHHHHHHHHHHHHhhhhccCcccccCCcccc-CHHHHHHHHHHHH
Confidence 6899999988889999999876532 2256788888775421 0110 01122222 5678889999999
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHhhhc---ccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy6239 78 FDEVLYQAHESYDSSIVVRYLFNLTN-SINKALKQL---QVKGTEYHVSQHRLLLFNKARLVLNQGMCVLG 144 (151)
Q Consensus 78 ~~~~l~~a~~~~~p~~l~~~l~~La~-~f~~fy~~~---~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llg 144 (151)
+.+.+.+++++++++.+++.+++++. .+++||-+. +...++.. ...|......+..+++..+.+|.
T Consensus 688 ~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~-~~~r~~~~~~l~~~l~~l~~lLa 757 (917)
T 1ffy_A 688 FTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRD-SHIRRSMQTVLYQILVDMTKLLA 757 (917)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTT-CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCC-cHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998 688877432 22322211 12344555566667777777764
No 14
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=96.98 E-value=0.007 Score=50.16 Aligned_cols=106 Identities=14% Similarity=0.044 Sum_probs=70.4
Q ss_pred chhHhHhhc-CCCCCceeeHhHHhcccCCCHHH-HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHH
Q psy6239 3 ALIVYNLKI-RRLKSYNFNWDECLHMSGDGGVK-LQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDE 80 (151)
Q Consensus 3 ai~~~~L~~-~~~~~~~fd~~~~~~~~~~~~~~-lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~ 80 (151)
++||++++. ...++++|+.+.+.+-.+..-.. +--...|+.+...+.+. ...+... ..+.++.++..+....+
T Consensus 345 ~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~----~~~~~~~-~~~~d~~il~~l~~~~~ 419 (542)
T 3u1f_A 345 ALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNG----EWPSPAA-YTEEDESLIQLIKDLPG 419 (542)
T ss_dssp HHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTS----BCCCCCC-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccC----CCCccch-hhHHHHHHHHHhhhhHH
Confidence 689999984 46789999988764321110000 11123444443222221 0111222 24567788889999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcc
Q psy6239 81 VLYQAHESYDSSIVVRYLFNLTNSINKALKQLQ 113 (151)
Q Consensus 81 ~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~ 113 (151)
.+.++.++++.+..++.++++....|.|++...
T Consensus 420 ~~~~~~~~~~~~~a~~~i~~~~~~~n~Y~~~~~ 452 (542)
T 3u1f_A 420 TADHYYLIPDIQKAIIAVFDVLRAINAYVTDMA 452 (542)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998653
No 15
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=96.34 E-value=0.018 Score=50.65 Aligned_cols=100 Identities=10% Similarity=-0.017 Sum_probs=75.6
Q ss_pred chhHhHhh-cCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCC--CCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 3 ALIVYNLK-IRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAI--QPPDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 3 ai~~~~L~-~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~--~~~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
|+||++++ ....++++|+.+.+... .-.+.|+.|++++.... .....++...+ .+.++.++..+..+.
T Consensus 659 alRl~ll~~~~~~~D~~fs~~~v~~~--------~~~l~Rl~n~~~~~~~~~~~~~~~~~~~~l-~~~D~~ll~~l~~~i 729 (878)
T 2v0c_A 659 IARITILFAAPPENEMVWTEEGVQGA--------WRFLNRIYRRVAEDREALLETSGVFQAEAL-EGKDRELYGKLHETL 729 (878)
T ss_dssp HHHHHHHHHSCTTSCEEECHHHHHHH--------HHHHHHHHHHHHHHHHHHHTCCCCCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCCceeCHHHHHHH--------HHHHHHHHHHHHHHHhcccccccccCcccC-CHHHHHHHHHHHHHH
Confidence 68999998 77889999998876432 24667888887653210 00011222222 567889999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhh
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLTNSINKALKQ 111 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~ 111 (151)
+.+.++.++++++.+++.+++++..+++|.+.
T Consensus 730 ~~v~~~~e~~~f~~Ai~~l~~f~~~l~k~~~~ 761 (878)
T 2v0c_A 730 KKVTEDLEALRFNTAIAALMEFLNALYEYRKD 761 (878)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999654
No 16
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=95.99 E-value=0.09 Score=45.75 Aligned_cols=99 Identities=9% Similarity=0.163 Sum_probs=73.6
Q ss_pred chhHhHh-hcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHH
Q psy6239 3 ALIVYNL-KIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEV 81 (151)
Q Consensus 3 ai~~~~L-~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~ 81 (151)
|+||++| +....++++|+.+.+... .-.+.|+.|++++...... + ... ..++.++.++..+..+.+.
T Consensus 672 alR~~ll~~~~~~~d~~fs~~~~~~~--------~~~l~rl~n~~~~~~~~~~-~--~~~-~~~~~d~~ll~~l~~~~~~ 739 (810)
T 1wkb_A 672 VVRLYIMSLAEHDSDFDWRRKEVGKL--------RKQIERFYELISQFAEYEV-K--GNV-ELKDIDRWMLHRLNKAIKE 739 (810)
T ss_dssp HHHHHHHHHCCTTCCEEECHHHHHHH--------HHHHHHHHHHHHHHHTCCC-C--SCC-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcccCHHHHHHH--------HHHHHHHHHHHHHHHhccC-c--ccc-cCCHHHHHHHHHHHHHHHH
Confidence 6899998 577888999998876332 2234788888887632110 0 111 1346778889999999999
Q ss_pred HHHHHHhcCHHHHHHHH-HHHHHHHHHHhhhcc
Q psy6239 82 LYQAHESYDSSIVVRYL-FNLTNSINKALKQLQ 113 (151)
Q Consensus 82 l~~a~~~~~p~~l~~~l-~~La~~f~~fy~~~~ 113 (151)
+.++.++++++.++..+ ..+...+|.|.+.++
T Consensus 740 v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k 772 (810)
T 1wkb_A 740 TTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTE 772 (810)
T ss_dssp HHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999865 699999999888765
No 17
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=95.75 E-value=0.054 Score=47.27 Aligned_cols=135 Identities=14% Similarity=0.041 Sum_probs=79.6
Q ss_pred chhHhHhhcC-CCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhc----CCCCCCC-C-CCCCCCCCHHHHHHHHHH
Q psy6239 3 ALIVYNLKIR-RLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQEC----NAIQPPD-H-CDPKLLAEPVALQLILDI 75 (151)
Q Consensus 3 ai~~~~L~~~-~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~----~~~~~~~-~-~d~~~l~~~~E~~L~~~l 75 (151)
|+||++++.. ..++++|+.+.+.....+ ...|+.|+++.. ...+..+ . ..... ..+.++.++..+
T Consensus 613 alR~~ll~~~~~~~d~~fs~~~l~~~~~~-------~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~ll~~l 684 (821)
T 1ile_A 613 ALRWYIYVSAPPEADRRFGPNLVRETVRD-------YFLTLWNVYSFFVTYANLDRPDLKNPPPPEK-RPEMDRWLLARM 684 (821)
T ss_dssp HHHHHHHHHSCSSSCEECCHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHCCCTTSCCCSTT-SCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCcEecHHHHHHHHHH-------HHHHHHHHHHHHHHhhccccCCccccccccc-CCHHHHHHHHHH
Confidence 6899999975 788999998886542111 113333333211 0001101 0 01112 246778888999
Q ss_pred HHhHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHhhh-c--ccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q psy6239 76 ARFDEVLYQAHESYDSSIVVRYLFNLT-NSINKALKQ-L--QVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKP 147 (151)
Q Consensus 76 ~~~~~~l~~a~~~~~p~~l~~~l~~La-~~f~~fy~~-~--~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~ 147 (151)
..+.+.+.++.++++++.+++.+++++ ..+.++|-+ + +...... ...|......+..++...+.+|.-=.
T Consensus 685 ~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~--~~~r~~~~~~l~~~l~~~~~lLaP~~ 758 (821)
T 1ile_A 685 QDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNED--ALDREAAYATLYEALVLVATLAAPFT 758 (821)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTT--TSSTTHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC--cHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 999999999999999999999999999 666665532 2 1111111 01133344455566666666665333
No 18
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=95.66 E-value=0.11 Score=45.73 Aligned_cols=96 Identities=10% Similarity=-0.055 Sum_probs=66.8
Q ss_pred chhHhHhhc-CCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcC--CCCCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 3 ALIVYNLKI-RRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECN--AIQPPDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 3 ai~~~~L~~-~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~--~~~~~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
|+||++++. ...++++|+.+.+..... .+.|+.|..|-.. ..+..+ . ... .++.++.++..+....
T Consensus 550 alR~~ll~~~~~~~D~~fs~~~l~~~~~--------f~nkl~N~~rf~~~~~~~~~~-~-~~~-~~~~D~~il~~l~~~~ 618 (862)
T 1gax_A 550 ALRFALIYLATGGQDIRLDLRWLEMARN--------FANKLYNAARFVLLSREGFQA-K-EDT-PTLADRFMRSRLSRGV 618 (862)
T ss_dssp HHHHHHHHHCCTTCCEECCHHHHHHHHH--------HHHHHHHHHHHHHHHSSSCCC-C-BCC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCccCHHHHHHHHH--------HHHHHHHHHHHHHhcccCCCC-c-ccc-CCHHHHHHHHHHHHHH
Confidence 689999985 788999999887654321 2235555443211 001111 0 111 3567788999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH-HHHHHHh
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLT-NSINKAL 109 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La-~~f~~fy 109 (151)
..+.++.++++++.+++.++++. ..+.+||
T Consensus 619 ~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Y 649 (862)
T 1gax_A 619 EEITALYEALDLAQAAREVYELVWSEFCDWY 649 (862)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999998 4566666
No 19
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=94.35 E-value=0.98 Score=39.82 Aligned_cols=97 Identities=11% Similarity=0.011 Sum_probs=67.2
Q ss_pred chhHhHhhc-CCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHH
Q psy6239 3 ALIVYNLKI-RRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEV 81 (151)
Q Consensus 3 ai~~~~L~~-~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~ 81 (151)
|+||++|+. ...++++|+.+.+..- .-...|+.+..+.....+.....+...+ ++.++.|+..+....+.
T Consensus 661 alRl~ll~~~~~~~dl~~s~~~ie~a--------~rfl~rlwn~~~~~~~~~~~~~~~~~~l-~~~D~~ll~~l~~~i~~ 731 (880)
T 4arc_A 661 TVRLFMMFASPADMTLEWQESGVEGA--------NRFLKRVWKLVYEHTAKGDVAALNVDAL-TENQKALRRDVHKTIAK 731 (880)
T ss_dssp HHHHHHHHSSCTTSCEECCHHHHHHH--------HHHHHHHHHHHHHHHHTCCCCCCCSTTC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcccCHHHHHHH--------HHHHHHHHHHHHHHHhcccccccccccC-CHHHHHHHHHHHHHHHH
Confidence 689999997 5788999998765321 1123455555543311011111222222 46788899999999999
Q ss_pred HHHHHH-hcCHHHHHHHHHHHHHHHHHH
Q psy6239 82 LYQAHE-SYDSSIVVRYLFNLTNSINKA 108 (151)
Q Consensus 82 l~~a~~-~~~p~~l~~~l~~La~~f~~f 108 (151)
+.++.+ .++.+.++..++++...+++|
T Consensus 732 V~~a~ed~~~fntAi~~l~efvn~l~k~ 759 (880)
T 4arc_A 732 VTDDIGRRQTFNTAIAAIMELMNKLAKA 759 (880)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHhh
Confidence 999998 799999999999999988875
No 20
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=90.90 E-value=3.5 Score=36.62 Aligned_cols=99 Identities=9% Similarity=0.163 Sum_probs=68.0
Q ss_pred chhHhHh-hcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHH
Q psy6239 3 ALIVYNL-KIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEV 81 (151)
Q Consensus 3 ai~~~~L-~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~ 81 (151)
|+||+++ +....++++|+.+.+... .-.+.|+.|..+.....+. + .... ..+.++.++..+......
T Consensus 672 alR~~ll~~~~~~~d~~fs~~~~~~~--------~~~l~rl~n~~~~~~~~~~-~--~~~~-~~~~D~~il~~l~~~~~~ 739 (967)
T 1wz2_A 672 VVRLYIMSLAEHDSDFDWRRKEVGKL--------RKQIERFYELISQFAEYEV-K--GNVE-LKDIDRWMLHRLNKAIKE 739 (967)
T ss_dssp HHHHHHHHHCCTTCCEEECHHHHHHH--------HHHHHHHHHHHHHHHSSCC-C--CCCC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCcccCHHHHHHH--------HHHHHHHHHHHHHHhcCCC-C--Cccc-CCHHHHHHHHHHHHHHHH
Confidence 6899997 566788999998765322 1223467676665422010 0 1111 245677788888888889
Q ss_pred HHHHHHhcCHHHHHHHH-HHHHHHHHHHhhhcc
Q psy6239 82 LYQAHESYDSSIVVRYL-FNLTNSINKALKQLQ 113 (151)
Q Consensus 82 l~~a~~~~~p~~l~~~l-~~La~~f~~fy~~~~ 113 (151)
+.++.++++.+..++.+ ..+...+|.|.+.++
T Consensus 740 v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k 772 (967)
T 1wz2_A 740 TTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTE 772 (967)
T ss_dssp HHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998764 688888887777654
No 21
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=86.53 E-value=4.1 Score=32.48 Aligned_cols=76 Identities=11% Similarity=-0.039 Sum_probs=55.8
Q ss_pred chhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHHH
Q psy6239 3 ALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVL 82 (151)
Q Consensus 3 ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~l 82 (151)
++||++|+....++++|+++.+.+... .+.|+.|.++..+. . . +..+.+.+
T Consensus 314 ~lR~~ll~~~~~~d~~fs~~~l~~~~~--------~l~~l~n~~~~~~~--------~----~---------~~~~~~~v 364 (414)
T 3c8z_A 314 AIRLGLFSGHYREDRFWSNEVLDEANA--------RLARWRSATALPEA--------P----D---------ATDVIARV 364 (414)
T ss_dssp HHHHHHHTSCTTSCBCCCHHHHHHHHH--------HHHHHHHHHTSSCB--------S----C---------CHHHHHHH
T ss_pred hheeEEEecCcCCCCCcCHHHHHHHHH--------HHHHHHHHHHhccc--------h----h---------HHHHHHHH
Confidence 699999998888999999987754322 24688887754321 0 0 12334456
Q ss_pred HHHH-HhcCHHHHHHHHHHHHHHHHH
Q psy6239 83 YQAH-ESYDSSIVVRYLFNLTNSINK 107 (151)
Q Consensus 83 ~~a~-~~~~p~~l~~~l~~La~~f~~ 107 (151)
.++. ++++.+..+..+.+++...|+
T Consensus 365 ~~a~~d~~~~~~Al~~i~~~~~~~n~ 390 (414)
T 3c8z_A 365 RQYLADDLDTPKALAALDGWCTDALS 390 (414)
T ss_dssp HHHHHBTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 6676 689999999999999999998
No 22
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=85.62 E-value=13 Score=30.21 Aligned_cols=107 Identities=12% Similarity=0.152 Sum_probs=67.3
Q ss_pred cchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHH
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEV 81 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~ 81 (151)
.++||++|+....++++|+.+.+.+- .-.+.|+.+.++.... .. +. .+..+...
T Consensus 290 dalR~~lls~~yr~~l~fs~~~l~~a--------~~~l~rl~~~~~~~~~------~~------~~------~~~~~~~~ 343 (462)
T 3tqo_A 290 EVLRYFLLSGHYRNPLSYSKENLENG--------RLALERFYLALRGLPV------VN------HE------KTSSYTDR 343 (462)
T ss_dssp HHHHHHHHHSCTTSCEEECHHHHHHH--------HHHHHHHHHHHTTCCC------------------------CHHHHH
T ss_pred HHhhhhhccCCCCCCcCcCHHHHHHH--------HHHHHHHHHHHHHhhh------cc------ch------hHHHHHHH
Confidence 37999999999999999998876432 3455677777765432 00 00 01223333
Q ss_pred HHHHHH-hcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy6239 82 LYQAHE-SYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLK 146 (151)
Q Consensus 82 l~~a~~-~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~ 146 (151)
+..+.. +++-...+..|+++++.+|+.-+.. +.. ....+...+.....+|||.
T Consensus 344 ~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~~-----~~~-------~~~~~~~~~~~~~~vlg~~ 397 (462)
T 3tqo_A 344 FYEAMDDDFNTPIAFALLFEMVREINRFRDNN-----QIE-------KAAVLAAELKCLGNIFGLL 397 (462)
T ss_dssp HHHHHTBTCCHHHHHHHHHHHHHHHHHHHHTT-----CHH-------HHHHHHHHHHHHHGGGTCS
T ss_pred HHHHHHhccChHHHHHHHHHHHHHHhhhhccc-----cHH-------HHHHHHHHHHHHHHhcCCC
Confidence 444444 7888889999999999999875432 111 1122335566667888884
No 23
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=49.40 E-value=2.9 Score=27.25 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 128 LFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 128 L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
+...+.+-++-.|.=|||++||.|
T Consensus 81 iY~~~lqElkPtl~ELGI~t~EeL 104 (109)
T 1v54_E 81 IYPYVIQELRPTLNELGISTPEEL 104 (109)
T ss_dssp HHHHHHHHHHHHHHHHTCCCTTTT
T ss_pred hHHHHHHHHhhHHHHhCCCCHHHh
Confidence 445555667777788999999976
No 24
>3pmd_A Conserved domain protein; globin fold, non-heme globin, sporulation, bacillus anthraci sensor domain, chloride coordination; HET: 11A; 1.76A {Bacillus anthracis}
Probab=42.99 E-value=40 Score=23.18 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCH----HHHHHHHHHHHHHHHHHHHHhhhc
Q psy6239 93 IVVRYLFNLTNSINKALKQLQVKGTEY----HVSQHRLLLFNKARLVLNQGMCVL 143 (151)
Q Consensus 93 ~l~~~l~~La~~f~~fy~~~~V~~~~~----~~~~~RL~L~~~~~~vl~~~l~ll 143 (151)
.+|.||.+=-+.|=+-|.+-.++.+++ ++.+|..++++.+...+....++-
T Consensus 10 ~L~~~L~e~~~~fl~~Wk~~i~i~e~D~~K~~I~~NG~~m~~lvi~~~~~~~sl~ 64 (153)
T 3pmd_A 10 YLCLYLKESQEKFISNWKKRILVHEHDPYKNEIIKNGTHLLHVFTMYMREEINLQ 64 (153)
T ss_dssp HHHHHHHHTHHHHHHHHHTTCCCCTTCTTHHHHHHHHHHHHHHHHHHHTTSSCGG
T ss_pred HHHHHHHHhHHHHHHHHHhccccCCCChHHHHHHHhHHHHHHHHHHHHhccCCHH
Confidence 467777776666766676666665543 489999999999998777665543
No 25
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=37.00 E-value=5.9 Score=27.20 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 128 LFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 128 L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
+...+.+-++-.|.=|||++||.|
T Consensus 124 iY~y~lqElkPtl~ELGI~t~EeL 147 (152)
T 2y69_E 124 IYPYVIQELRPTLNELGISTPEEL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHTCCCTTTT
T ss_pred hHHHHHHHHhhHHHHhCCCCHHHh
Confidence 445555667777788999999976
No 26
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=31.87 E-value=51 Score=16.30 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy6239 94 VVRYLFNLTNSINKALK 110 (151)
Q Consensus 94 l~~~l~~La~~f~~fy~ 110 (151)
+++-|-.+...||.||-
T Consensus 8 IAQELRRIGDeFNa~yp 24 (33)
T 1pq1_B 8 IAQELRRIGDEFNETYT 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhhcccc
Confidence 56788899999999883
No 27
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=31.61 E-value=11 Score=30.86 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=25.4
Q ss_pred cchhHhHhhcCCCCCceeeHhHHhcccCC
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDECLHMSGD 30 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~~~~~~~ 30 (151)
++|++++++..+.++..||++++..+++.
T Consensus 307 e~i~~f~l~~~~~~~~~fd~~kl~~~n~~ 335 (481)
T 2o5r_A 307 ELISSFSLDRLSPNPAIFDPQKLKWMNGY 335 (481)
T ss_dssp HHHHHCCGGGBCSSCEECCHHHHHHHHHH
T ss_pred HHHHhCChhhCCccCcccChHHhhhhCHH
Confidence 46889999999999999999999988753
No 28
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis} PDB: 3pmc_A
Probab=25.65 E-value=1.1e+02 Score=20.59 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCH----HHHHHHHHHHHHHHHHHHHHhhh
Q psy6239 93 IVVRYLFNLTNSINKALKQLQVKGTEY----HVSQHRLLLFNKARLVLNQGMCV 142 (151)
Q Consensus 93 ~l~~~l~~La~~f~~fy~~~~V~~~~~----~~~~~RL~L~~~~~~vl~~~l~l 142 (151)
.+|.||.+=-+.|=+.|.+-+++.+++ ++.+|=.+++..+...+....++
T Consensus 7 ~l~~~L~~~~~~fl~~Wkk~i~i~e~D~~k~~I~~NG~~m~~lvi~~~~~~~s~ 60 (136)
T 1yku_A 7 LLCRYLKERQEKFISDWKKKVIIRERDPYKEEIIKNGEHLLSAFIMYLKEEISL 60 (136)
T ss_dssp HHHHHHHHTHHHHHHHHHTTSCCCTTCTTHHHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred HHHHHHHHhHHHHHHHHHhcccccCCCcHHHHHHHhHHHHHHHHHHHHhccCCH
Confidence 478888887777877787777776553 47889999999998877665543
No 29
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=25.01 E-value=32 Score=16.10 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHh
Q psy6239 94 VVRYLFNLTNSINKAL 109 (151)
Q Consensus 94 l~~~l~~La~~f~~fy 109 (151)
+++-|-.+...||.||
T Consensus 8 iAqELRRIGDeFN~~y 23 (26)
T 2wh6_B 8 IAQELRRIGDEFNAYY 23 (26)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhHHHhhhc
Confidence 4577888888888877
No 30
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=21.38 E-value=1.2e+02 Score=22.20 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy6239 119 YHVSQHRLLLFNKARLVLNQGMCVLGLK 146 (151)
Q Consensus 119 ~~~~~~RL~L~~~~~~vl~~~l~llgi~ 146 (151)
.|+++.|++++..+--+....+...|+.
T Consensus 64 aELkHGR~AMLA~~G~lv~E~l~~~G~~ 91 (232)
T 2bhw_A 64 LEVIHSRWAMLGALGSVFPELLSRNGVK 91 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHhccchHHHhhhhhhhHHHhccCCcC
Confidence 3789999999999999999988877764
Done!