RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6239
(151 letters)
>gnl|CDD|153410 cd07956, Anticodon_Ia_Arg, Anticodon-binding domain of arginyl tRNA
synthetases. This domain is found in arginyl tRNA
synthetases (ArgRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ArgRS catalyzes the
transfer of arginine to the 3'-end of its tRNA.
Length = 156
Score = 122 bits (308), Expect = 2e-36
Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 3/153 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+ +L +R+K Y F+W+ L GD G LQY+H RL S+ D
Sbjct: 5 VGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSI-LRKAGETIEAEADA 63
Query: 61 KL--LAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE 118
L L EP LIL +A+F EV+ A E+ + + YLF+L ++ +K V G E
Sbjct: 64 DLSLLPEPDERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVLGAE 123
Query: 119 YHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ RL L AR VL G+ +LG++ ++M
Sbjct: 124 EELRNARLALVAAARQVLANGLDLLGIEAPERM 156
>gnl|CDD|214846 smart00836, DALR_1, DALR anticodon binding domain. This all alpha
helical domain is the anticodon binding domain of
Arginyl tRNA synthetase. This domain is known as the
DALR domain after characteristic conserved amino acids.
Length = 122
Score = 95.7 bits (239), Expect = 2e-26
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 35 LQYSHCRLVSL----AQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYD 90
+QY+H R+ S+ + + D LL EP L+L +ARF EVL A E +
Sbjct: 1 VQYAHARICSILRKAGEAGETLPDIADADLSLLTEPEEWALLLKLARFPEVLEAAAEQLE 60
Query: 91 SSIVVRYLFNLTNSINKALKQLQVKGTE-YHVSQHRLLLFNKARLVLNQGMCVLGLKPLD 149
+ YL++L + + +++V G E + + RL L R VL G+ +LG+ +
Sbjct: 61 PHRLANYLYDLAAAFHSFYNRVRVLGEENPELRKARLALLKAVRQVLANGLRLLGISAPE 120
Query: 150 KM 151
+M
Sbjct: 121 RM 122
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 96.2 bits (240), Expect = 6e-24
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 6/154 (3%)
Query: 2 SALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSL---AQECNAIQPPDHC 58
A+ +L R K Y F+WD+ L G+ +QY+H R+ S+ A E + +
Sbjct: 426 DAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGE-DELDLSTEA 484
Query: 59 DPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE 118
D LL E +L+ + F EVL +A E + + YL++L S N V G E
Sbjct: 485 DA-LLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACPVLGAE 543
Query: 119 -YHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ RL L R VL G+ +LG++ ++M
Sbjct: 544 NEELRAARLALVKATRQVLKNGLDLLGIEAPERM 577
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori [Protein synthesis, tRNA
aminoacylation].
Length = 566
Score = 92.4 bits (230), Expect = 1e-22
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 1/151 (0%)
Query: 2 SALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPK 61
A+ ++L R Y F+WD L G+ +QY+H R+ S+ ++ + D
Sbjct: 416 GAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADDF 475
Query: 62 LLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE-YH 120
L E +L+ + +F +VL +A E + ++ YL+ L + + K V E +
Sbjct: 476 SLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKACPVLDAENEN 535
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
++ RL L R L G+ +LG++P ++M
Sbjct: 536 LAAARLALLKATRQTLKNGLQLLGIEPPERM 566
>gnl|CDD|218729 pfam05746, DALR_1, DALR anticodon binding domain. This all alpha
helical domain is the anticodon binding domain in
Arginyl and glycyl tRNA synthetase. This domain is known
as the DALR domain after characteristic conserved amino
acids.
Length = 117
Score = 82.3 bits (204), Expect = 3e-21
Identities = 32/117 (27%), Positives = 56/117 (47%)
Query: 35 LQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIV 94
LQY+H R+ S+ ++ + D LL E +L+ + +F EVL +A E + +
Sbjct: 1 LQYAHARICSILRKAGELGINLDIDADLLTEEEEKELLKALLQFPEVLEEAAEELEPHRL 60
Query: 95 VRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
YL+ L ++ + +V + RL L R VL G+ +LG++ +KM
Sbjct: 61 ANYLYELASAFHSFYNNCRVLDEDNEERNARLALLKAVRQVLKNGLDLLGIEAPEKM 117
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 85.6 bits (213), Expect = 3e-20
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+ ++L R K +F+ D L G+ +QY+H R+ S+ ++
Sbjct: 359 IDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHARICSILRKAAEAGIDL--LL 416
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
LL E +LI +A F EV+ A E + + YL+ L + + ++ +K E
Sbjct: 417 ALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRVLLKDEEEE 476
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ RL L VL G+ +LG+ ++M
Sbjct: 477 LRNARLALVKATAQVLKNGLDLLGISAPERM 507
>gnl|CDD|215160 PLN02286, PLN02286, arginine-tRNA ligase.
Length = 576
Score = 69.7 bits (171), Expect = 1e-14
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 7 YNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNA-IQPPDHCDPKLLAE 65
+LK RL +Y F++D+ L + G+ V L Y+H R+ S+ ++ I +L
Sbjct: 433 ADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDH 492
Query: 66 PVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHR 125
P L L + +F EV+ +A + + YL+NL+ K +V G+E S R
Sbjct: 493 PDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCKVNGSEEETS--R 550
Query: 126 LLLFNKARLVLNQGMCVLGLKPLDKM 151
LLL +V+ + +LG+ PL ++
Sbjct: 551 LLLCEATAIVMRKCFHLLGITPLYRL 576
>gnl|CDD|183534 PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed.
Length = 562
Score = 67.5 bits (165), Expect = 6e-14
Identities = 33/149 (22%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 3 ALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKL 62
A+I ++LK R+ + F+ + L G+ G +QY+H R S+ ++ + + C L
Sbjct: 418 AVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESV--EFETCTFAL 475
Query: 63 LAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVS 122
+ + ++ + +F +V+ A + S++ +Y+ ++ S NK +++
Sbjct: 476 KDD-YSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRILEES-AEK 533
Query: 123 QHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
RL L +VL +G+ +LG++ ++M
Sbjct: 534 DSRLALVYAVTVVLKEGLRLLGVEAPEEM 562
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of
the tRNA. Aminoacyl tRNA synthetases catalyze the
transfer of cognate amino acids to the 3'-end of their
tRNAs by specifically recognizing cognate from
non-cognate amino acids. Members include valyl-,
leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
methionyl-tRNA synthethases. This superfamily also
includes a domain from MshC, an enzyme in the mycothiol
biosynthetic pathway.
Length = 117
Score = 41.7 bits (98), Expect = 1e-05
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 2/114 (1%)
Query: 31 GGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYD 90
RL+S ++ P + L E +L+ + F + A E+ D
Sbjct: 6 QARAFLNRLYRLLSFFRKALGGTQPKWDNELL--EEADRELLARLQEFIKRTTNALEALD 63
Query: 91 SSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLG 144
+ V+ LF TN +N L +L+ + + L + A +VL + +
Sbjct: 64 PTTAVQELFKFTNELNWYLDELKPALQTEELREAVLAVLRAALVVLTKLLAPFT 117
>gnl|CDD|221927 pfam13116, DUF3971, Protein of unknown function. Some members of
this family are related to the AsmA family proteins.
Length = 289
Score = 28.8 bits (65), Expect = 1.0
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 60 PKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGT 117
P L E L++ D + E + ++ L +S+ +AL LQV G
Sbjct: 112 PDLFGEKSVLEIDGDASGPGEAILDYLKASP----------LKDSVGEALPVLQVSGK 159
>gnl|CDD|200545 cd10919, CE4_CDA_like, Putative catalytic domain of chitin
deacetylase-like proteins from insects and similar
proteins. Chitin deacetylases (CDAs, EC 3.5.1.41) are
secreted metalloproteins belonging to a family of
extracellular chitin-modifying enzymes that catalyze the
N-deacetylation of chitin, a beta-1,4-linked
N-acetylglucosamine polymer, to form chitosan, a polymer
of beta-(1,4)-linked d-glucosamine residues. CDAs have
been isolated and characterized from various bacterial
and fungal species and belong to the larger carbohydrate
esterase family 4 (CE4). This family includes many
CDA-like proteins, mainly from insects, which contain a
putative CDA-like catalytic domain similar to the
catalytic NodB homology domain of CE4 esterases. Some
family members have an additional chitin binding domain
(ChBD), or an additional low-density lipoprotein
receptor class A domain (LDLa), or both. Due to the lack
of some catalytically relevant residues, several insect
CDA-like proteins are devoid of enzymatic activity and
may simply bind to chitin and thus influence the
mechanical or permeability properties of
chitin-containing structures such as the cuticle or the
peritrophic membrane. This family also includes many
uncharacterized hypothetical proteins from bacteria,
exhibiting high sequence similarity to insect CDA-like
proteins.
Length = 273
Score = 28.5 bits (64), Expect = 1.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 80 EVLYQAHESYDSSIVVRYLFNLTN 103
EVL + YDSSI Y + TN
Sbjct: 119 EVLEENGFLYDSSIPEPYTPSGTN 142
>gnl|CDD|151416 pfam10969, DUF2771, Protein of unknown function (DUF2771). This
bacterial family of proteins has no known function.
Length = 161
Score = 28.2 bits (63), Expect = 1.5
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 37 YSHCRLVSLA--QECNAIQPPDHCDPKLLAE-------PVALQLILDIARFDEVLYQAHE 87
YSH L + Q C+ + D P+ E P+ L + IAR L + +E
Sbjct: 40 YSHGHLTRVGPYQYCDVLNEDDCTTPEAQGELEVPERYPLQLSVPSAIARAPWRLLRVYE 99
Query: 88 SYDSSIVVRY 97
+ V +
Sbjct: 100 DPAGTTVTVH 109
>gnl|CDD|241419 cd13265, PH_evt, Evectin Pleckstrin homology (PH) domain. There
are 2 members of the evectin family (also called
pleckstrin homology domain containing, family B): evt-1
(also called PLEKHB1) and evt-2 (also called PLEKHB2).
evt-1 is specific to the nervous system, where it is
expressed in photoreceptors and myelinating glia. evt-2
is widely expressed in both neural and nonneural
tissues. Evectins possess a single N-terminal PH domain
and a C-terminal hydrophobic region. evt-1 is thought
to function as a mediator of post-Golgi trafficking in
cells that produce large membrane-rich organelles. It
is a candidate gene for the inherited human retinopathy
autosomal dominant familial exudative vitreoretinopathy
and a susceptibility gene for multiple sclerosis. evt-2
is essential for retrograde endosomal membrane
transport from the plasma membrane (PM) to the Golgi.
Two membrane trafficking pathways pass through
recycling endosomes: a recycling pathway and a
retrograde pathway that links the PM to the Golgi/ER.
Its PH domain that is unique in that it specifically
recognizes phosphatidylserine (PS), but not
polyphosphoinositides. PS is an anionic phospholipid
class in eukaryotic biomembranes, is highly enriched in
the PM, and plays key roles in various physiological
processes such as the coagulation cascade, recruitment
and activation of signaling molecules, and clearance of
apoptotic cells. PH domains are only found in
eukaryotes. They share little sequence conservation,
but all have a common fold, which is electrostatically
polarized. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction
with a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved
across all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 108
Score = 27.3 bits (61), Expect = 1.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 38 SHCRLVSLAQECNAIQPPDH 57
CR + + EC +QPP+
Sbjct: 51 IECRNIRVGLECRDVQPPEG 70
>gnl|CDD|219454 pfam07528, DZF, DZF domain. The function of this domain is
unknown. It is often found associated with pfam00098 or
pfam00035. This domain has been predicted to belong to
the nucleotidyltransferase superfamily.
Length = 248
Score = 27.5 bits (61), Expect = 2.8
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 32 GVKLQYSHCR----LVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHE 87
G + + + +L + ++P DH D K + L I F+E AH
Sbjct: 72 GFHITSPVAKVRMLIATLPENLRKLEPEDHLDRKKMQ--SHLASIRHTRWFEE---NAHH 126
Query: 88 SYDSSIVVRYLFNLT 102
+++R L +L
Sbjct: 127 LKSIKVLIRVLKDLC 141
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 27.4 bits (61), Expect = 3.3
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 41 RLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARF 78
RL+ L Q I+ P H PK L P+ ++ + F
Sbjct: 310 RLIELLQAEPDIKAPAH--PKTLPVPLRGEIEFEQVNF 345
>gnl|CDD|240231 PTZ00019, PTZ00019, fructose-bisphosphate aldolase; Provisional.
Length = 355
Score = 27.0 bits (60), Expect = 4.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 102 TNSINKALKQLQVKGTEYHVSQHRLLLF 129
T +I K + ++ TE + +R LLF
Sbjct: 28 TGTIKKRFDPIGLENTEENRRAYRELLF 55
>gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c)
SDRs. Members of this subgroup include proteins
identified as L-xylulose reductase (XR) and carbonyl
reductase; they are members of the SDR family. XR,
catalyzes the NADP-dependent reduction of L-xyulose and
other sugars. Tetrameric mouse carbonyl reductase is
involved in the metabolism of biogenic and xenobiotic
carbonyl compounds. This subgroup also includes
tetrameric chicken liver D-erythrulose reductase, which
catalyzes the reduction of D-erythrulose to D-threitol.
SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRS are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes have a 3-glycine N-terminal NAD(P)(H)-binding
pattern (typically, TGxxxGxG in classical SDRs and
TGxxGxxG in extended SDRs), while substrate binding is
in the C-terminal region. A critical catalytic Tyr
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering), is often found in a
conserved YXXXK pattern. In addition to the Tyr and Lys,
there is often an upstream Ser (Ser-138, 15-PGDH
numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or
additional Ser, contributing to the active site.
Substrates for these enzymes include sugars, steroids,
alcohols, and aromatic compounds. The standard reaction
mechanism is a proton relay involving the conserved Tyr
and Lys, as well as Asn (or Ser).
Length = 244
Score = 26.7 bits (59), Expect = 5.4
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 25 LHMSGDGGVKLQYSHCRLVSLAQECNAIQP--PDHCDPKLLAEPVALQLILD-------I 75
L +G V + + L SL +EC I+P D D E + +D +
Sbjct: 27 LAKAGARVVAVSRTQADLDSLVRECPGIEPVCVDLSDWDATEEALGSVGPVDLLVNNAAV 86
Query: 76 ARFDEVLYQAHESYDSS--IVVRYLFNLTNSINKALKQLQVKGTEYHVS 122
A L E++D S + VR + +++ + + + V G+ +VS
Sbjct: 87 AILQPFLEVTKEAFDRSFDVNVRAVIHVSQIVARGMIARGVPGSIVNVS 135
>gnl|CDD|202150 pfam02199, SapA, Saposin A-type domain.
Length = 34
Score = 24.2 bits (53), Expect = 5.7
Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
Query: 40 CRLVSLAQECNAIQPPDHC 58
C+ + A++CNA++ HC
Sbjct: 13 CQNLETAKQCNAVE---HC 28
>gnl|CDD|215833 pfam00274, Glycolytic, Fructose-bisphosphate aldolase class-I.
Length = 348
Score = 26.4 bits (59), Expect = 6.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 102 TNSINKALKQLQVKGTEYHVSQHRLLLF 129
T +I K L + V+ TE + +R LLF
Sbjct: 23 TGTIGKRLASIGVENTEENRRAYRELLF 50
>gnl|CDD|188635 cd00948, FBP_aldolase_I_a, Fructose-1,6-bisphosphate aldolase.
Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes
the cleavage of fructose 1,6-bisphosphate to
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate (DHAP). This family includes proteins found in
vertebrates, plants, and bacterial plant pathogens.
Mutations in the aldolase genes in humans cause
hemolytic anemia and hereditary fructose intolerance.
The enzyme is a member of the class I aldolase family,
which utilizes covalent catalysis through a Schiff base
formed between a lysine residue of the enzyme and ketose
substrates.
Length = 330
Score = 26.1 bits (58), Expect = 7.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 102 TNSINKALKQLQVKGTEYHVSQHRLLLF 129
T +I K + V+ TE + +R LLF
Sbjct: 25 TGTIGKRFASIGVENTEENRRAYRELLF 52
>gnl|CDD|128420 smart00110, C1Q, Complement component C1q domain. Globular
domain found in many collagens and eponymously in
complement C1q. When part of full length proteins these
domains form a 'bouquet' due to the multimerization of
heterotrimers. The C1q fold is similar to that of
tumour necrosis factor.
Length = 135
Score = 25.3 bits (56), Expect = 9.4
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 77 RFDEVLYQAHESYDSS 92
RFD+VLY YD
Sbjct: 26 RFDKVLYNQQGHYDPR 41
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.414
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,512,402
Number of extensions: 654934
Number of successful extensions: 576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 27
Length of query: 151
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 63
Effective length of database: 7,034,450
Effective search space: 443170350
Effective search space used: 443170350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (24.5 bits)