RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6239
         (151 letters)



>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 124

 Score = 69.3 bits (169), Expect = 1e-16
 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 32  GVKLQYSHCRLVSLAQECNAIQPPD--HCDPKLLAEPVALQLILDIARFDEVLYQAHESY 89
           G  LQY+H RL S+ +  + I      + D  LL EP A  LI  + ++ +VL  A +++
Sbjct: 3   GPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTH 62

Query: 90  DSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLD 149
           + + VV YLF LT+ ++     L V G    ++  RL L+  AR VL  GM +LGL P++
Sbjct: 63  EPTTVVTYLFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPVE 122

Query: 150 KM 151
           +M
Sbjct: 123 RM 124


>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 126

 Score = 59.3 bits (143), Expect = 7e-13
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 11/130 (8%)

Query: 29  GDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHES 88
           GD G  +QY+H R  S+ ++      PD       A P    L LD+  F+E + +A E 
Sbjct: 1   GDTGPYVQYAHARAHSILRKAGEWGAPDL----SQATPYERALALDLLDFEEAVLEAAEE 56

Query: 89  YDSSIVVRYLFNLT-------NSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMC 141
               ++ +YL +L        N+         V      + + RL L    +  L  G+ 
Sbjct: 57  RTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLD 116

Query: 142 VLGLKPLDKM 151
           +LG+   + M
Sbjct: 117 LLGIPAPEVM 126


>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 348

 Score = 32.2 bits (72), Expect = 0.019
 Identities = 8/29 (27%), Positives = 19/29 (65%)

Query: 1   MSALIVYNLKIRRLKSYNFNWDECLHMSG 29
           +SA+++ +++ +R+ +Y F W+  L   G
Sbjct: 320 ISAVMIQDMQGKRINNYEFKWERMLSFEG 348


>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 370

 Score = 29.5 bits (65), Expect = 0.16
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 1   MSALIVYNLKIRRLKSYNFNWDECL 25
           + A+    +K    K  +F + E L
Sbjct: 343 LGAIRFSMVKTEPKKQIDFRYQEAL 367


>d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase
           {Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId:
           9986]}
          Length = 363

 Score = 29.2 bits (65), Expect = 0.16
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 102 TNSINKALKQLQVKGTEYHVSQHRLLLF 129
           T SI K L+ +  + TE +   +R LL 
Sbjct: 36  TGSIAKRLQSIGTENTEENRRFYRQLLL 63


>d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human
           (Homo sapiens), liver isozyme [TaxId: 9606]}
          Length = 360

 Score = 29.2 bits (65), Expect = 0.18
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 102 TNSINKALKQLQVKGTEYHVSQHRLLLF 129
             ++   L++++V+ TE +  Q R +LF
Sbjct: 36  VGTMGNRLQRIKVENTEENRRQFREILF 63


>d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase
           {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
          Length = 357

 Score = 28.8 bits (64), Expect = 0.26
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 102 TNSINKALKQLQVKGTEYHVSQHRLLLFN 130
             S  K  + + +  TE H  Q+R L+  
Sbjct: 46  IGSCTKRFQPIGLSNTEEHRRQYRALMLE 74


>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C
           [TaxId: 556]}
          Length = 353

 Score = 28.2 bits (62), Expect = 0.44
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 5   IVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHC 58
           +V N++I  L     + D    +  D    +   H  L +   EC+     D  
Sbjct: 114 VVQNMRIGYLPGGAKDGD---MIRVDDSPNVWVDHNELFAANHECDGTPDNDTT 164


>d1a5ca_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase
           {Plasmodium falciparum [TaxId: 5833]}
          Length = 342

 Score = 26.9 bits (59), Expect = 0.97
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 102 TNSINKALKQLQVKGTEYHVSQHRLLLF 129
           T +I K    ++++ T  + + +R LLF
Sbjct: 30  TQTIKKRFDNIKLENTIENRASYRDLLF 57


>d3c5zd2 d.19.1.1 (D:1-120) Class II MHC beta chain, N-terminal
          domain {Mouse (Mus musculus), I-AB [TaxId: 10090]}
          Length = 120

 Score = 24.7 bits (54), Expect = 3.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 10 KIRRLKSYNFNWDECLHMSGDGG 32
          +IR +  Y +N +E +    D G
Sbjct: 49 RIRYVTRYIYNREEYVRYDSDVG 71


>d1klub2 d.19.1.1 (B:1-92) Class II MHC beta chain, N-terminal
          domain {Human (Homo sapiens), HLA-DR1 [TaxId: 9606]}
          Length = 92

 Score = 23.8 bits (52), Expect = 5.1
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 10 KIRRLKSYNFNWDECLHMSGDGG 32
          ++R L+   +N +E +    D G
Sbjct: 23 RVRLLERCIYNQEESVRFDSDVG 45


>d1uvqb2 d.19.1.1 (B:3-94) Class II MHC beta chain, N-terminal
          domain {Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]}
          Length = 92

 Score = 23.8 bits (52), Expect = 5.3
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 10 KIRRLKSYNFNWDECLHMSGDGG 32
          ++R +  Y +N +E      D G
Sbjct: 21 RVRLVTRYIYNREEYARFDSDVG 43


>d1iakb2 d.19.1.1 (B:5-92) Class II MHC beta chain, N-terminal
          domain {Mouse (Mus musculus), I-AK [TaxId: 10090]}
          Length = 87

 Score = 23.8 bits (52), Expect = 5.6
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 10 KIRRLKSYNFNWDECLHMSGDGG 32
          +IR +  Y +N +E +    D G
Sbjct: 19 RIRLVIRYIYNREEYVRFDSDVG 41


>d1fngb2 d.19.1.1 (B:4-92) Class II MHC beta chain, N-terminal
          domain {Mouse (Mus musculus), I-EK [TaxId: 10090]}
          Length = 89

 Score = 23.4 bits (51), Expect = 6.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 10 KIRRLKSYNFNWDECLHMSGDGG 32
          ++R L  Y +N +E L    D G
Sbjct: 20 RVRLLVRYFYNLEENLRFDSDVG 42


>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor
           subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId:
           10116]}
          Length = 277

 Score = 24.2 bits (51), Expect = 7.9
 Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 3/64 (4%)

Query: 57  HCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSS---IVVRYLFNLTNSINKALKQLQ 113
             D  +    V             V   +   + ++   I ++        I+ AL Q  
Sbjct: 200 KLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFV 259

Query: 114 VKGT 117
             G 
Sbjct: 260 GDGE 263


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 554,609
Number of extensions: 23401
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 15
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (22.8 bits)