BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6240
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0P5H7|SYRM_BOVIN Probable arginine--tRNA ligase, mitochondrial OS=Bos taurus
GN=RARS2 PE=2 SV=1
Length = 578
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 103/194 (53%), Gaps = 31/194 (15%)
Query: 40 TEFITQVLTSTGDKHVYKTQLNC---TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANL 96
T+ + Q + G K+ K++L ++VVEFSSPN+AK FHVGH R T++GNF+ANL
Sbjct: 98 TKTVLQQVIEDGSKYGLKSELFSGLPKKRIVVEFSSPNVAKKFHVGHLRSTIIGNFIANL 157
Query: 97 SNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKIN 156
+ V +NYLGDWG QFGLL G + + L+ SPL L++ YV+ N+ A
Sbjct: 158 KEALGHQVTRINYLGDWGMQFGLLGTGFQLFGYEE-KLQSSPLQHLFEVYVQVNKEA--- 213
Query: 157 PDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTL 216
A+D +V + A FQ+LE G + W F+ +++
Sbjct: 214 ------------------ADD-----KNVAKSAHEFFQRLELG-DMQALALWQKFRDLSI 249
Query: 217 NELRGTYERLGIHF 230
+E Y+RLG+HF
Sbjct: 250 DEYMRIYQRLGVHF 263
>sp|Q5T160|SYRM_HUMAN Probable arginine--tRNA ligase, mitochondrial OS=Homo sapiens
GN=RARS2 PE=1 SV=1
Length = 578
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 31/194 (15%)
Query: 40 TEFITQVLTSTGDKHVYKTQLNC---TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANL 96
T+ + Q + G K+ K++L K+VVEFSSPN+AK FHVGH R T++GNF+ANL
Sbjct: 98 TKTVLQQVIEDGSKYGLKSELFSGLPQKKIVVEFSSPNVAKKFHVGHLRSTIIGNFIANL 157
Query: 97 SNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKIN 156
+ V+ +NYLGDWG QFGLL G + Y+ +++N
Sbjct: 158 KEALGHQVIRINYLGDWGMQFGLLGTGFQLFG--------------YEEKLQSN------ 197
Query: 157 PDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTL 216
PL L++ YV+ N A + V + A FQ+LE G + W F+ +++
Sbjct: 198 -------PLQHLFEVYVQVNKEAADDKSVAKAAQEFFQRLELG-DVQALSLWQKFRDLSI 249
Query: 217 NELRGTYERLGIHF 230
E Y+RLG++F
Sbjct: 250 EEYIRVYKRLGVYF 263
>sp|Q5REH3|SYRM_PONAB Probable arginine--tRNA ligase, mitochondrial OS=Pongo abelii
GN=RARS2 PE=2 SV=1
Length = 578
Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 31/194 (15%)
Query: 40 TEFITQVLTSTGDKHVYKTQLNC---TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANL 96
T+ + Q + G K+ K++L K+VVEFSSPN+AK FHVGH R T++GNF+ANL
Sbjct: 98 TKTVLQQVIEDGSKYGLKSELFSGLPQKKIVVEFSSPNVAKKFHVGHLRSTIIGNFIANL 157
Query: 97 SNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKIN 156
+ V+ +NYLGDWG QFGLL G + Y+ +++N
Sbjct: 158 KEALGHQVIRINYLGDWGMQFGLLGTGFQLFG--------------YEEKLQSN------ 197
Query: 157 PDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTL 216
PL L++ YV+ N A + V + A FQ+LE G + W F+ +++
Sbjct: 198 -------PLQHLFEVYVQVNKEAADDKSVAKAAQEFFQRLELG-DVQALSLWQKFRDLSI 249
Query: 217 NELRGTYERLGIHF 230
E Y+RLG++F
Sbjct: 250 EEYIRVYKRLGVYF 263
>sp|O74781|SYRC_SCHPO Probable arginine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC25B2.09c PE=2
SV=1
Length = 618
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 94/166 (56%), Gaps = 9/166 (5%)
Query: 66 VVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLK 125
V+EFSSPNIAKPFH GH R T++G+F+ANL V +NYLGDWG QFGLL IG K
Sbjct: 143 AVIEFSSPNIAKPFHAGHLRSTIIGSFLANLHESQGWKVHRVNYLGDWGKQFGLLAIGYK 202
Query: 126 ELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINP-D 184
+ L+ +P+ LY YV K+N D E+ KA ++ L P
Sbjct: 203 KYG-DEDQLKSNPIRHLYDVYV------KVNADATEEDEKIQKDKAEAESKGLPYTPPLS 255
Query: 185 VQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHF 230
+ ++A F+++E G K W F+ +++ +L+ TY+RL IH+
Sbjct: 256 LHDKAREFFKRMEDGDEE-SLKVWARFRDLSITKLKDTYDRLNIHY 300
>sp|Q3U186|SYRM_MOUSE Probable arginine--tRNA ligase, mitochondrial OS=Mus musculus
GN=Rars2 PE=2 SV=1
Length = 578
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 100/194 (51%), Gaps = 31/194 (15%)
Query: 40 TEFITQVLTSTGDKHVYKTQLNC---TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANL 96
T+ + Q +T G K+ K++L ++VVEFSSPNIAK FHVGH R T++GNF+ANL
Sbjct: 98 TKAVLQQVTEDGCKYGLKSELFSDLPKKRIVVEFSSPNIAKKFHVGHLRSTIIGNFIANL 157
Query: 97 SNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKIN 156
+ V +NY+GDWG QFGLL G + Y+ ++ N
Sbjct: 158 KEALGHQVTRINYIGDWGMQFGLLGTGFQLFG--------------YEEKLQTN------ 197
Query: 157 PDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTL 216
PL L+ YV+ N A + +V + A F +LE G +T W F+ +++
Sbjct: 198 -------PLQHLFDVYVQVNKEATDDKNVTKLAHEFFHRLEMG-DTQALSLWQRFRDLSI 249
Query: 217 NELRGTYERLGIHF 230
E Y+RLGI+F
Sbjct: 250 EEYTQIYKRLGIYF 263
>sp|Q6GQJ7|SYRM_XENLA Probable arginine--tRNA ligase, mitochondrial OS=Xenopus laevis
GN=rars2 PE=2 SV=1
Length = 580
Score = 114 bits (284), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 101/213 (47%), Gaps = 37/213 (17%)
Query: 21 RGGTQFHIDDDNVILPVDKTEFITQVLTSTGDKHVYKTQLNC---TDKVVVEFSSPNIAK 77
RG F I+ D + T + Q ++ G + T+L K +VE+SSPNIAK
Sbjct: 88 RGSVTFKINRDLL------TRNVLQQISKDGSLYGLNTELFSELSRRKTIVEYSSPNIAK 141
Query: 78 PFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQS 137
FHVGH R T++GNF+ANL N VV +NYLGDWG QFGLL G K L
Sbjct: 142 KFHVGHLRSTIIGNFIANLKQAVGNEVVRINYLGDWGLQFGLLGAGFSSFGSKEKLLA-- 199
Query: 138 PLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLE 197
NP L L++ YVK N A+ + ++ A ++LE
Sbjct: 200 ------------------NP-------LQHLFEVYVKVNTAAEKDNGIKLSAQEFLRRLE 234
Query: 198 CGKNTLHTKDWLDFQQVTLNELRGTYERLGIHF 230
G + W+ F+ +++ E Y+RLG HF
Sbjct: 235 -GGDPHALSLWMHFRDISIQEYAKIYKRLGAHF 266
>sp|P38714|SYRM_YEAST Arginine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MSR1 PE=3 SV=3
Length = 643
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 21/168 (12%)
Query: 65 KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGL 124
KVVVEFSSPNIAKPFH GH R T++G F++NL +V +NYLGDWG QFGLL +G
Sbjct: 180 KVVVEFSSPNIAKPFHAGHLRSTIIGGFLSNLYEAMGWSVTRMNYLGDWGRQFGLLAVGF 239
Query: 125 KELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPD 184
K + T L++ P+ L+ YV KIN D L K + N I+
Sbjct: 240 KRYGDEKT-LQKQPIQHLFDVYV------KINMD---------LAKEEINGNSKCGIS-- 281
Query: 185 VQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSV 232
+A + F+ LE G K W F+ ++++ TY RL I+F +
Sbjct: 282 --GEARSFFKNLENGDEN-AIKIWNRFRSLSIHHYIQTYSRLNINFDI 326
>sp|Q558Z0|SYRC_DICDI Probable arginine--tRNA ligase, cytoplasmic OS=Dictyostelium
discoideum GN=argS1 PE=3 SV=1
Length = 589
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 28/180 (15%)
Query: 65 KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGL 124
KV+VEFSSPNIAKPFH GH R T++GNF+ NL N A V +NYLGDWG Q+GLL +G
Sbjct: 114 KVIVEFSSPNIAKPFHAGHLRSTIIGNFMVNLFNELAYETVSMNYLGDWGKQYGLLAVGF 173
Query: 125 KELNIKHTDLEQSPLDVLYKAYVKAN------------ELAKINPDVQEQAPLDVLYKAY 172
++ +L P+ LY YV+ N +I V+ APL
Sbjct: 174 EKYG-SEEELLADPIKHLYNVYVQINGEAEKEEEAKKKYAEEIAAGVEPTAPL------- 225
Query: 173 VKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSV 232
+ P + + A F+++E G + W F+ +++ + + Y RL + F +
Sbjct: 226 -------QTTPTIHDTARAYFKRMEDG-DAEALAIWKRFRDLSIVKYKDIYNRLNVKFDI 277
>sp|Q05506|SYRC_YEAST Arginine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YDR341C PE=1 SV=1
Length = 607
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 21/168 (12%)
Query: 65 KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGL 124
KV++EFSSPNIAKPFH GH R T++G F+ANL V+ +NYLGDWG QFGLL +G
Sbjct: 144 KVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGF 203
Query: 125 KELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPD 184
+ + L + P+ L+ YV +IN D++E+ D +
Sbjct: 204 ERYGNEEA-LVKDPIHHLFDVYV------RINKDIEEEG-------------DSIPLEQS 243
Query: 185 VQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSV 232
+A F+++E G K W F++ ++ + TY RL I + V
Sbjct: 244 TNGKAREYFKRMEDGDEE-ALKIWKRFREFSIEKYIDTYARLNIKYDV 290
>sp|Q8SRD8|SYR_ENCCU Arginine--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU08_0550 PE=1 SV=1
Length = 563
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 27/168 (16%)
Query: 65 KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGL 124
++VVE+SSPNIAK FH+GH R TVLG F+ NL +NY GDWG QFG + +G
Sbjct: 113 RMVVEYSSPNIAKIFHIGHLRTTVLGQFIVNLLRASGYETTSINYFGDWGKQFGFVLLGY 172
Query: 125 KELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPD 184
+ +LE+ PL L+ YV KI+ D ++ NPD
Sbjct: 173 SKYG-SEEELEKDPLKHLFNVYV------KISADAEK--------------------NPD 205
Query: 185 VQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSV 232
V +A IF+ +E K+ W F+++++ + + Y+RL + F V
Sbjct: 206 VDSEAKEIFRMMEEDKDEWCMNLWRRFRELSIEKYKVLYKRLNVEFDV 253
>sp|A6TNX2|SYR_ALKMQ Arginine--tRNA ligase OS=Alkaliphilus metalliredigens (strain QYMF)
GN=argS PE=3 SV=1
Length = 566
Score = 104 bits (259), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 31/189 (16%)
Query: 43 ITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFAN 102
+ Q + S GD++ + L + +++S+PN+AKPFHVGH R TV+GN + + ++
Sbjct: 94 VIQEVLSKGDQYGSRN-LGEGKNICIDYSAPNVAKPFHVGHLRSTVIGNSLYRIYDFLGY 152
Query: 103 NVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQ 162
N + +N+LGDWGTQFG + V YK + E+ E+
Sbjct: 153 NCIGINHLGDWGTQFG-------------------KVIVAYKNWGDKAEI--------EK 185
Query: 163 APLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQVTLNELRG 221
P++ L YVK +D A+ NPD++++A F ++E G + L W F T+ EL+
Sbjct: 186 EPINTLLALYVKFHDEAEKNPDLEDEARGWFTKMEKGDEEALSLWKW--FSSETIKELKK 243
Query: 222 TYERLGIHF 230
Y L +HF
Sbjct: 244 IYALLDVHF 252
>sp|B8CWA9|SYR_HALOH Arginine--tRNA ligase OS=Halothermothrix orenii (strain H 168 / OCM
544 / DSM 9562) GN=argS PE=3 SV=1
Length = 566
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 28/165 (16%)
Query: 66 VVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLK 125
V+VEFSSPNIAKPFH+GH R TV+G+ + N+ N+ N + +N+LGD+GTQFG L + L
Sbjct: 116 VIVEFSSPNIAKPFHIGHIRTTVIGHALRNIYNFLGYNAIAINHLGDYGTQFGKLIVALN 175
Query: 126 ELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDV 185
+ K +K+N P+ K Y+K ++ A+ NP++
Sbjct: 176 KWGDKDK--------------IKSN-------------PIPEFLKLYIKFHEEAEKNPEL 208
Query: 186 QEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHF 230
+E+A + F +LE K+ W + ++L E + Y+ LGI F
Sbjct: 209 EEKARSWFNRLE-NKDEEAMDLWKWIRNMSLKEFKRVYDMLGIDF 252
>sp|C4L0Z5|SYR_EXISA Arginine--tRNA ligase OS=Exiguobacterium sp. (strain ATCC BAA-1283
/ AT1b) GN=argS PE=3 SV=1
Length = 560
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 101/201 (50%), Gaps = 33/201 (16%)
Query: 32 NVILPVD--KTEFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVL 89
NV L D E I VL +K Y T + +V +FSSPNIAKPF +GH R TV+
Sbjct: 81 NVFLSRDVVSKEIINTVLE---EKSEYATHEARNETIVTDFSSPNIAKPFSMGHLRSTVI 137
Query: 90 GNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKA 149
GN + ++ +VV +N+LGDWGTQFG L + K K D E V+A
Sbjct: 138 GNAINQIARKNGYDVVGVNHLGDWGTQFGKLMVAYK----KWGDEEA----------VRA 183
Query: 150 NELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWL 209
N P+ L K YV ++ AK P+++++ F++LE G + T+ W
Sbjct: 184 N-------------PIAELLKLYVHFHEEAKTQPELEDEGRAWFKKLEDG-DAEATELWQ 229
Query: 210 DFQQVTLNELRGTYERLGIHF 230
F+ +L E + Y+ LG+ F
Sbjct: 230 WFRDESLKEFQKVYDLLGVKF 250
>sp|B1KYT1|SYR_CLOBM Arginine--tRNA ligase OS=Clostridium botulinum (strain Loch Maree /
Type A3) GN=argS PE=3 SV=1
Length = 563
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 100/196 (51%), Gaps = 30/196 (15%)
Query: 37 VDKTEFITQVLTST-GDKHVY-KTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
VDKT I VL +K Y +++ VVVE+SSPNIAKPFH+GH T +GN +
Sbjct: 82 VDKTVLIKDVLEKVLNEKEKYGSSKVGEGKNVVVEYSSPNIAKPFHIGHLFTTAIGNALY 141
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
+ ++ N + +N+LGDWGTQFG L + + LE+ + L + YVK +E A+
Sbjct: 142 KILSFEGYNCIGINHLGDWGTQFGKLISAYRRW-VDEEALEKDAIGELLRIYVKFHEEAE 200
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQV 214
NP+++++A L+ F++LE G T+ W F+ +
Sbjct: 201 KNPELEKEARLN--------------------------FKKLEDGSEE-ETELWNRFKDL 233
Query: 215 TLNELRGTYERLGIHF 230
+L E Y+ LGI F
Sbjct: 234 SLKEFNKVYDMLGIKF 249
>sp|Q8XJU2|SYR_CLOPE Arginine--tRNA ligase OS=Clostridium perfringens (strain 13 / Type
A) GN=argS PE=3 SV=1
Length = 565
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 108/219 (49%), Gaps = 32/219 (14%)
Query: 15 SENINIRGGTQFHIDDDNVILPVDKTEFITQVLTST---GDKHVYKTQLNCTDKVVVEFS 71
+E IN G + + VDK F +++ GDK+ +++ VVVE+S
Sbjct: 60 AEKINKEGFERVECLGPYLNFFVDKVAFSKNIISKVLEEGDKYG-SSKIGEGKNVVVEYS 118
Query: 72 SPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKH 131
SPNIAKPFHVGH T +G+ + + N+ N + +N+LGDWGTQFG L K +
Sbjct: 119 SPNIAKPFHVGHLFTTAIGHSLYRMLNFEGYNPIRINHLGDWGTQFGKLISAYKRWGNEE 178
Query: 132 TDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASN 191
LE++P+ NEL +I YVK +D A+ NP+++++
Sbjct: 179 A-LEEAPI----------NELLRI----------------YVKFHDEAENNPELEDEGRM 211
Query: 192 IFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHF 230
F++LE G W F+ ++L E Y+ LG+ F
Sbjct: 212 YFKKLEDGDQE-AVALWERFKDLSLKEFNKIYDMLGVDF 249
>sp|B1IIE6|SYR_CLOBK Arginine--tRNA ligase OS=Clostridium botulinum (strain Okra / Type
B1) GN=argS PE=3 SV=1
Length = 563
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 30/196 (15%)
Query: 37 VDKTEFITQVLTST-GDKHVY-KTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
VDKT I VL +K Y +++ VVVE+SSPNIAKPFH+GH T +GN +
Sbjct: 82 VDKTILIKDVLEKVLSEKEKYGSSKVGEGKNVVVEYSSPNIAKPFHIGHLFTTAIGNALY 141
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
+ ++ N + +N+LGDWGTQFG L + + LE+ + L + YVK +E A+
Sbjct: 142 KILSFEGYNCIGINHLGDWGTQFGKLISAYRRW-VDEEALEKDAIGELLRIYVKFHEEAE 200
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQV 214
+P+++++A L+ F++LE G T+ W F+ +
Sbjct: 201 KDPELEKEARLN--------------------------FKRLEDGSEE-ETELWNRFKDL 233
Query: 215 TLNELRGTYERLGIHF 230
+L E Y+ LGI F
Sbjct: 234 SLKEFNKVYDMLGIKF 249
>sp|B1YFI1|SYR_EXIS2 Arginine--tRNA ligase OS=Exiguobacterium sibiricum (strain DSM
17290 / JCM 13490 / 255-15) GN=argS PE=3 SV=1
Length = 560
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 31/190 (16%)
Query: 41 EFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYF 100
E I +VL ++ Y + +V +FSSPNIAKPF +GH R TV+GN + +S
Sbjct: 92 EIIKRVLE---EQQAYGSSELNGKTIVTDFSSPNIAKPFSMGHLRSTVIGNALNQISRKK 148
Query: 101 ANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQ 160
VV +N+LGDWGTQFG L + K D+ P+ L K YV+ +E A+ NP ++
Sbjct: 149 GYEVVGINHLGDWGTQFGKLMVAYNMWG-KEEDVRSEPIKELLKLYVRFHEEAEENPGLE 207
Query: 161 EQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELR 220
++ +A+ F++LE G + T W F++V+L E
Sbjct: 208 DEG------RAW--------------------FKKLEQG-DEQATALWTWFREVSLVEFS 240
Query: 221 GTYERLGIHF 230
YE LG+ F
Sbjct: 241 RVYEMLGVSF 250
>sp|Q97K78|SYR_CLOAB Arginine--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=argS PE=3 SV=1
Length = 563
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 30/196 (15%)
Query: 37 VDKTEFITQVLTST-GDKHVY-KTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
VDK +F + + S ++ Y ++++ KV++E+SSPNIAKPFHVGH GTVLG+ +
Sbjct: 82 VDKADFAKETIESVLSERDNYGRSKVGEGKKVLIEYSSPNIAKPFHVGHLFGTVLGSSLY 141
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
+ + + V +N+LGDWGTQFG L K D LYK
Sbjct: 142 KIFSMEGYDCVRINHLGDWGTQFGKLISAYKRW---------CDEDALYK---------- 182
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQV 214
P+ L + YVK + A+ +P ++++ F++LE G+ + W F+ +
Sbjct: 183 --------DPIKELLRIYVKFHKEAEKDPLLEDEGRMYFKRLEDGEKE-EVELWTKFKDL 233
Query: 215 TLNELRGTYERLGIHF 230
+L E + Y ++G+ F
Sbjct: 234 SLREFKKVYNQIGVEF 249
>sp|A7GCB9|SYR_CLOBL Arginine--tRNA ligase OS=Clostridium botulinum (strain Langeland /
NCTC 10281 / Type F) GN=argS PE=3 SV=1
Length = 563
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 30/196 (15%)
Query: 37 VDKTEFITQVLTST-GDKHVY-KTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
VDKT I VL +K Y +++ VVVE+SSPNIAKPFH+GH T +GN +
Sbjct: 82 VDKTILIKDVLEKVLSEKEKYGSSKVGEGKNVVVEYSSPNIAKPFHIGHLFTTAIGNALY 141
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
+ ++ N + +N+LGDWGTQFG L + + LE+ + L + YVK +E A+
Sbjct: 142 KILSFEGYNCIGINHLGDWGTQFGKLISAYRRW-VDEEALEKDAIGELLRIYVKFHEEAE 200
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQV 214
+P+++++A L+ F+ LE G T+ W F+ +
Sbjct: 201 KDPELEKEARLN--------------------------FKNLEDGSKE-ETELWNRFKDL 233
Query: 215 TLNELRGTYERLGIHF 230
+L E Y+ LGI F
Sbjct: 234 SLKEFNKVYDMLGIKF 249
>sp|Q1LTI8|SYR_BAUCH Arginine--tRNA ligase OS=Baumannia cicadellinicola subsp.
Homalodisca coagulata GN=argS PE=3 SV=1
Length = 578
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 29/195 (14%)
Query: 37 VDKTEFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANL 96
+D T++ T+ + + + +VV++SSPNIAK HVGH R T++G+ A +
Sbjct: 87 LDSQWLATKIATAIASPRLGISLIELPQTIVVDYSSPNIAKEMHVGHIRSTIIGDASARI 146
Query: 97 SNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKIN 156
++ + V+ +N++GDWGT FG+L + Y V+ N I+
Sbjct: 147 LDFIGHKVIRINHIGDWGTHFGML--------------------IAYLQQVEKN----ID 182
Query: 157 PDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTL 216
P++ PL L + Y +A D +P ++A N +L+CG ++ K W ++T+
Sbjct: 183 PEI----PLSFLDQLYRQAKDKYDTDPSFAQEARNCVVKLQCG-DSFCLKIWQKLVKITI 237
Query: 217 NELRGTYERLGIHFS 231
NE + Y RL I S
Sbjct: 238 NENQKIYNRLNISLS 252
>sp|A6LS73|SYR_CLOB8 Arginine--tRNA ligase OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=argS PE=3 SV=1
Length = 563
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 86/165 (52%), Gaps = 28/165 (16%)
Query: 66 VVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLK 125
V VE+SSPNIAKPFHVGH T +GN + + N V LN+LGDWGTQFG L I
Sbjct: 113 VCVEYSSPNIAKPFHVGHLFTTAIGNSLYKMFKKEGYNTVGLNHLGDWGTQFGKL-ISAY 171
Query: 126 ELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDV 185
+ + LE++P+D L + YVK +E A+ +P ++++A +AN
Sbjct: 172 DRWVDEEALEKAPIDELLRIYVKFHEEAEKDPSLEDEA----------RAN--------- 212
Query: 186 QEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHF 230
F+ LE G + T W F+ ++L E Y LG+ F
Sbjct: 213 -------FKALETG-DEKATALWTRFRDLSLKEFERVYNILGVKF 249
>sp|A5N8F9|SYR_CLOK5 Arginine--tRNA ligase OS=Clostridium kluyveri (strain ATCC 8527 /
DSM 555 / NCIMB 10680) GN=argS PE=3 SV=1
Length = 566
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 96/197 (48%), Gaps = 32/197 (16%)
Query: 37 VDK---TEFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFV 93
VDK TE+ + + GD + + + VVVE+SSPNIAKPFHVGH T +GN +
Sbjct: 82 VDKKIFTEYTLKEILLKGDSYG-SSDMGEGKNVVVEYSSPNIAKPFHVGHLFSTSIGNAL 140
Query: 94 ANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELA 153
+ N+ N +N+LGDWGTQFG L Y + A EL
Sbjct: 141 YKMINFQGYNCTRINHLGDWGTQFG-------------------KLIAAYNRWCNAEEL- 180
Query: 154 KINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQ 213
N D P+ L + YVK ++ A+ +P + E+ F++LE G K W F+
Sbjct: 181 --NRD-----PIKELLRIYVKFHEEAEKDPSLNEEGRMYFKKLEDGSEE-EIKLWKKFKD 232
Query: 214 VTLNELRGTYERLGIHF 230
++L E + Y+ L + F
Sbjct: 233 LSLREFKKVYDLLKVDF 249
>sp|B9E1W5|SYR_CLOK1 Arginine--tRNA ligase OS=Clostridium kluyveri (strain NBRC 12016)
GN=argS PE=3 SV=1
Length = 566
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 96/197 (48%), Gaps = 32/197 (16%)
Query: 37 VDK---TEFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFV 93
VDK TE+ + + GD + + + VVVE+SSPNIAKPFHVGH T +GN +
Sbjct: 82 VDKKIFTEYTLKEILLKGDSYG-SSDMGEGKNVVVEYSSPNIAKPFHVGHLFSTSIGNAL 140
Query: 94 ANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELA 153
+ N+ N +N+LGDWGTQFG L Y + A EL
Sbjct: 141 YKMINFQGYNCTRINHLGDWGTQFG-------------------KLIAAYNRWCNAEEL- 180
Query: 154 KINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQ 213
N D P+ L + YVK ++ A+ +P + E+ F++LE G K W F+
Sbjct: 181 --NRD-----PIKELLRIYVKFHEEAEKDPSLNEEGRMYFKKLEDGSEE-EIKLWKKFKD 232
Query: 214 VTLNELRGTYERLGIHF 230
++L E + Y+ L + F
Sbjct: 233 LSLREFKKVYDLLKVDF 249
>sp|Q8RG14|SYR_FUSNN Arginine--tRNA ligase OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=argS PE=3 SV=1
Length = 569
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 100/190 (52%), Gaps = 29/190 (15%)
Query: 41 EFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYF 100
++I+ + G+ + + + LN KV+++FSSPNIAK H+GH R T++G ++ + +
Sbjct: 92 KYISNSIKKIGEDYDF-SFLNRKGKVIIDFSSPNIAKRMHIGHLRSTIIGESISRIYRFL 150
Query: 101 ANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQ 160
+VV N++GDWGTQFG L +G + K KAY K
Sbjct: 151 GYDVVADNHIGDWGTQFGKLIVGYRNWLDK-------------KAYKK------------ 185
Query: 161 EQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELR 220
++ L + YVK +D A+ +P +++ A ++++ G+ +TK W +F +L E
Sbjct: 186 --NAIEELERVYVKFSDEAEKDPSLEDLARAELKKVQDGEEE-NTKLWKEFITESLKEYN 242
Query: 221 GTYERLGIHF 230
Y+RL +HF
Sbjct: 243 KLYKRLDVHF 252
>sp|Q81R81|SYR2_BACAN Arginine--tRNA ligase 2 OS=Bacillus anthracis GN=argS2 PE=3 SV=1
Length = 562
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 93/186 (50%), Gaps = 31/186 (16%)
Query: 48 TSTGDKHVY-KTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVC 106
T +K Y K C VV+++SSPNIAKPF +GH R T++GN + +++ VV
Sbjct: 96 TILAEKEEYGKNYFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNSLKHIAEKCGYEVVG 155
Query: 107 LNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLD 166
+NY+GDWGTQFG L K+ N V ++ P+
Sbjct: 156 INYIGDWGTQFGKLITAYKKWG---------------------------NEAVVKEDPIR 188
Query: 167 VLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQVTLNELRGTYER 225
L+K YV+ ++ K + +++E+ F++LE G + + +W F+ +L E YE
Sbjct: 189 ELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNW--FRHESLKEFSRIYEL 246
Query: 226 LGIHFS 231
LG+ F+
Sbjct: 247 LGVEFT 252
>sp|C1CTY4|SYR_STRZT Arginine--tRNA ligase OS=Streptococcus pneumoniae (strain
Taiwan19F-14) GN=argS PE=3 SV=1
Length = 563
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 32/197 (16%)
Query: 37 VDKTEFITQVLTS-TGDKHVYKTQ-LNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK+ QVL + T +K Y Q + + VV++ SSPNIAKPF +GH R TV+G+ ++
Sbjct: 83 LDKSAISAQVLQAVTTEKEHYADQNIGKQENVVIDMSSPNIAKPFSIGHLRSTVIGDSLS 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
++ V +N+LGDWG QFG+L + K K D E VKA+
Sbjct: 143 HIFQKIGYQTVKVNHLGDWGKQFGMLIVAYK----KWGDEEA----------VKAH---- 184
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQ 213
P+D L K YV+ N A+ +P + E+A F++LE G + L W F+
Sbjct: 185 ---------PIDELLKLYVRINAEAENDPSLDEEAREWFRKLENGDEEALALWQW--FRD 233
Query: 214 VTLNELRGTYERLGIHF 230
+L E Y L + F
Sbjct: 234 ESLVEFNRLYNELKVEF 250
>sp|B5E387|SYR_STRP4 Arginine--tRNA ligase OS=Streptococcus pneumoniae serotype 19F
(strain G54) GN=argS PE=3 SV=1
Length = 563
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 32/197 (16%)
Query: 37 VDKTEFITQVLTS-TGDKHVYKTQ-LNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK+ QVL + T +K Y Q + + VV++ SSPNIAKPF +GH R TV+G+ ++
Sbjct: 83 LDKSAISAQVLQAVTTEKEHYADQNIGKQENVVIDMSSPNIAKPFSIGHLRSTVIGDSLS 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
++ V +N+LGDWG QFG+L + K K D E VKA+
Sbjct: 143 HIFQKIGYQTVKVNHLGDWGKQFGMLIVAYK----KWGDEEA----------VKAH---- 184
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQ 213
P+D L K YV+ N A+ +P + E+A F++LE G + L W F+
Sbjct: 185 ---------PIDELLKLYVRINAEAENDPSLDEEAREWFRKLENGDEEALALWQW--FRD 233
Query: 214 VTLNELRGTYERLGIHF 230
+L E Y L + F
Sbjct: 234 ESLVEFNRLYNELKVEF 250
>sp|C1CN25|SYR_STRZP Arginine--tRNA ligase OS=Streptococcus pneumoniae (strain P1031)
GN=argS PE=3 SV=1
Length = 563
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 32/197 (16%)
Query: 37 VDKTEFITQVLTS-TGDKHVYKTQ-LNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK+ QVL + T +K Y Q + + VV++ SSPNIAKPF +GH R TV+G+ ++
Sbjct: 83 LDKSAISAQVLQAVTTEKEHYADQNIGKQENVVIDMSSPNIAKPFSIGHLRSTVIGDSLS 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
++ V +N+LGDWG QFG+L + K K D E VKA+
Sbjct: 143 HIFQKIGYQTVKVNHLGDWGKQFGMLIVAYK----KWGDEEA----------VKAH---- 184
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQ 213
P+D L K YV+ N A+ +P + E+A F++LE G + L W F+
Sbjct: 185 ---------PIDELLKLYVRINAEAENDPSLDEEAREWFRKLENGDEEALALWQW--FRD 233
Query: 214 VTLNELRGTYERLGIHF 230
+L E Y L + F
Sbjct: 234 ESLVEFNRLYNELKVEF 250
>sp|C1CAQ7|SYR_STRP7 Arginine--tRNA ligase OS=Streptococcus pneumoniae (strain 70585)
GN=argS PE=3 SV=1
Length = 563
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 32/197 (16%)
Query: 37 VDKTEFITQVLTS-TGDKHVYKTQ-LNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK+ QVL + T +K Y Q + + VV++ SSPNIAKPF +GH R TV+G+ ++
Sbjct: 83 LDKSAISAQVLQAVTTEKEHYADQNIGKQENVVIDMSSPNIAKPFSIGHLRSTVIGDSLS 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
++ V +N+LGDWG QFG+L + K K D E VKA+
Sbjct: 143 HIFQKIGYQTVKVNHLGDWGKQFGMLIVAYK----KWGDEEA----------VKAH---- 184
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQ 213
P+D L K YV+ N A+ +P + E+A F++LE G + L W F+
Sbjct: 185 ---------PIDELLKLYVRINAEAENDPSLDEEAREWFRKLENGDEEALALWQW--FRD 233
Query: 214 VTLNELRGTYERLGIHF 230
+L E Y L + F
Sbjct: 234 ESLVEFNRLYNELKVEF 250
>sp|B2IMZ8|SYR_STRPS Arginine--tRNA ligase OS=Streptococcus pneumoniae (strain CGSP14)
GN=argS PE=3 SV=1
Length = 563
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 32/197 (16%)
Query: 37 VDKTEFITQVLTS-TGDKHVYKTQ-LNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK+ QVL + T +K Y Q + + VV++ SSPNIAKPF +GH R TV+G+ ++
Sbjct: 83 LDKSAISAQVLQAVTTEKEHYADQNIGKQENVVIDMSSPNIAKPFSIGHLRSTVIGDSLS 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
++ V +N+LGDWG QFG+L + K K D E VKA+
Sbjct: 143 HIFQKIGYQTVKVNHLGDWGKQFGMLIVAYK----KWGDEEA----------VKAH---- 184
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQ 213
P+D L K YV+ N A+ +P + E+A F++LE G + L W F+
Sbjct: 185 ---------PIDELLKLYVRINAEAENDPSLDEEAREWFRKLENGDEEALALWQW--FRD 233
Query: 214 VTLNELRGTYERLGIHF 230
+L E Y L + F
Sbjct: 234 ESLVEFNRLYNELKVEF 250
>sp|C1CH08|SYR_STRZJ Arginine--tRNA ligase OS=Streptococcus pneumoniae (strain JJA)
GN=argS PE=3 SV=1
Length = 563
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 32/197 (16%)
Query: 37 VDKTEFITQVLTS-TGDKHVYKTQ-LNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK+ QVL + T +K Y Q + + VV++ SSPNIAKPF +GH R TV+G+ ++
Sbjct: 83 LDKSAISAQVLQAVTTEKEHYADQNIGKQENVVIDMSSPNIAKPFSIGHLRSTVIGDSLS 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
++ V +N+LGDWG QFG+L + K K D E VKA+
Sbjct: 143 HIFQKIGYQTVKVNHLGDWGKQFGMLIVAYK----KWGDEEA----------VKAH---- 184
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQ 213
P+D L K YV+ N A+ +P + E+A F++LE G + L W F+
Sbjct: 185 ---------PIDELLKLYVRINAEAENDPSLDEEAREWFRKLENGDEEALALWQW--FRD 233
Query: 214 VTLNELRGTYERLGIHF 230
+L E Y L + F
Sbjct: 234 ESLVEFNRLYNELKVEF 250
>sp|Q8DN69|SYR_STRR6 Arginine--tRNA ligase OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=argS PE=3 SV=1
Length = 563
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 32/197 (16%)
Query: 37 VDKTEFITQVLTS-TGDKHVYKTQ-LNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK+ QVL + T +K Y Q + + VV++ SSPNIAKPF +GH R TV+G+ ++
Sbjct: 83 LDKSAISAQVLQAVTTEKEHYADQNIGKQENVVIDMSSPNIAKPFSIGHLRSTVIGDSLS 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
++ V +N+LGDWG QFG+L + K K D E VKA+
Sbjct: 143 HIFQKIGYQTVKVNHLGDWGKQFGMLIVAYK----KWGDEEA----------VKAH---- 184
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQ 213
P+D L K YV+ N A+ +P + E+A F++LE G + L W F+
Sbjct: 185 ---------PIDELLKLYVRINAEAENDPSLDEEAREWFRKLENGDEEALALWQW--FRD 233
Query: 214 VTLNELRGTYERLGIHF 230
+L E Y L + F
Sbjct: 234 ESLVEFNRLYNELKVEF 250
>sp|B8ZPK2|SYR_STRPJ Arginine--tRNA ligase OS=Streptococcus pneumoniae (strain ATCC
700669 / Spain 23F-1) GN=argS PE=3 SV=1
Length = 563
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 32/197 (16%)
Query: 37 VDKTEFITQVLTS-TGDKHVYKTQ-LNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK+ QVL + T +K Y Q + + VV++ SSPNIAKPF +GH R TV+G+ ++
Sbjct: 83 LDKSAISAQVLQAVTTEKEHYADQNIGKQENVVIDMSSPNIAKPFSIGHLRSTVIGDSLS 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
++ V +N+LGDWG QFG+L + K K D E VKA+
Sbjct: 143 HIFQKIGYQTVKVNHLGDWGKQFGMLIVAYK----KWGDEEA----------VKAH---- 184
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQ 213
P+D L K YV+ N A+ +P + E+A F++LE G + L W F+
Sbjct: 185 ---------PIDELLKLYVRINAEAENDPSLDEEAREWFRKLENGDEEALALWQW--FRD 233
Query: 214 VTLNELRGTYERLGIHF 230
+L E Y L + F
Sbjct: 234 ESLVEFNRLYNELKVEF 250
>sp|Q04I94|SYR_STRP2 Arginine--tRNA ligase OS=Streptococcus pneumoniae serotype 2
(strain D39 / NCTC 7466) GN=argS PE=3 SV=1
Length = 563
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 32/197 (16%)
Query: 37 VDKTEFITQVLTS-TGDKHVYKTQ-LNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK+ QVL + T +K Y Q + + VV++ SSPNIAKPF +GH R TV+G+ ++
Sbjct: 83 LDKSAISAQVLQAVTTEKEHYADQNIGKQENVVIDMSSPNIAKPFSIGHLRSTVIGDSLS 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
++ V +N+LGDWG QFG+L + K K D E VKA+
Sbjct: 143 HIFQKIGYQTVKVNHLGDWGKQFGMLIVAYK----KWGDEEA----------VKAH---- 184
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQ 213
P+D L K YV+ N A+ +P + E+A F++LE G + L W F+
Sbjct: 185 ---------PIDELLKLYVRINAEAENDPSLDEEAREWFRKLENGDEEALALWQW--FRD 233
Query: 214 VTLNELRGTYERLGIHF 230
+L E Y L + F
Sbjct: 234 ESLVEFNRLYNELKVEF 250
>sp|Q54869|SYR_STRPN Arginine--tRNA ligase OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=argS PE=1 SV=2
Length = 563
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 32/197 (16%)
Query: 37 VDKTEFITQVLTS-TGDKHVYKTQ-LNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK+ QVL + T +K Y Q + + VV++ SSPNIAKPF +GH R TV+G+ ++
Sbjct: 83 LDKSAISAQVLQAVTTEKEHYADQNIGKQENVVIDMSSPNIAKPFSIGHLRSTVIGDSLS 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
++ V +N+LGDWG QFG+L + K K D E VKA+
Sbjct: 143 HIFQKIGYQTVKVNHLGDWGKQFGMLIVAYK----KWGDEEA----------VKAH---- 184
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQ 213
P+D L K YV+ N A+ +P + E+A F++LE G + L W F+
Sbjct: 185 ---------PIDELLKLYVRINAEAENDPSLDEEAREWFRKLENGDEEALALWQW--FRD 233
Query: 214 VTLNELRGTYERLGIHF 230
+L E Y L + F
Sbjct: 234 ESLVEFNRLYNELKVEF 250
>sp|Q63C01|SYR1_BACCZ Arginine--tRNA ligase 1 OS=Bacillus cereus (strain ZK / E33L)
GN=argS1 PE=3 SV=1
Length = 562
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 31/186 (16%)
Query: 48 TSTGDKHVY-KTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVC 106
T +K Y + C VV+++SSPNIAKPF +GH R T++GN + +++ VV
Sbjct: 96 TILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNSLKHIAEKCGYEVVG 155
Query: 107 LNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLD 166
+NY+GDWGTQFG L K+ N V ++ P+
Sbjct: 156 INYIGDWGTQFGKLITAYKKWG---------------------------NEAVVKEDPIR 188
Query: 167 VLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQVTLNELRGTYER 225
L+K YV+ ++ K + +++E+ F++LE G + + +W F+ +L E YE
Sbjct: 189 ELFKLYVQFHEEIKDDEELEEEGRAWFKKLEEGDEEAVELWNW--FRHESLKEFSRIYEL 246
Query: 226 LGIHFS 231
LG+ F+
Sbjct: 247 LGVEFT 252
>sp|B1I9E7|SYR_STRPI Arginine--tRNA ligase OS=Streptococcus pneumoniae (strain
Hungary19A-6) GN=argS PE=3 SV=1
Length = 563
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 32/197 (16%)
Query: 37 VDKTEFITQVLTS-TGDKHVYKTQ-LNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK+ QVL + T +K Y Q + + VV++ SSPNIAKPF +GH R TV+G+ ++
Sbjct: 83 LDKSTISAQVLQAVTTEKEHYADQNIGKQENVVIDMSSPNIAKPFSIGHLRSTVIGDSLS 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
++ V +N+LGDWG QFG+L + K K D E VKA+
Sbjct: 143 HIFQKIGYQTVKVNHLGDWGKQFGMLIVAYK----KWGDEEA----------VKAH---- 184
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQ 213
P+D L K YV+ N A+ +P + E+A F++LE G + L W F+
Sbjct: 185 ---------PIDELLKLYVRINAEAENDPSLDEEAREWFRKLENGDEEALALWQW--FRD 233
Query: 214 VTLNELRGTYERLGIHF 230
+L E Y L + F
Sbjct: 234 ESLVEFNRLYNELKVEF 250
>sp|B2UW74|SYR_CLOBA Arginine--tRNA ligase OS=Clostridium botulinum (strain Alaska E43 /
Type E3) GN=argS PE=3 SV=1
Length = 563
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 84/165 (50%), Gaps = 28/165 (16%)
Query: 66 VVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLK 125
V VE+SSPNIAKPFHVGH T +GN + + +VV LN+LGDWGTQFG L I
Sbjct: 113 VCVEYSSPNIAKPFHVGHLFTTAIGNSLYKMFKKEGYDVVGLNHLGDWGTQFGKL-ISAY 171
Query: 126 ELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDV 185
+ LE++P+D EL +I YVK +D A+ +P +
Sbjct: 172 NRWVDEEALEKAPID----------ELLRI----------------YVKFHDEAEKDPSL 205
Query: 186 QEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHF 230
+++ F++LE G W F+ ++L E Y+ LG+ F
Sbjct: 206 EDEGRMYFKKLETGDAEAQAL-WKRFRDLSLKEFERVYDILGVKF 249
>sp|Q8DWV9|SYR_STRA5 Arginine--tRNA ligase OS=Streptococcus agalactiae serotype V
(strain ATCC BAA-611 / 2603 V/R) GN=argS PE=3 SV=1
Length = 563
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 37 VDKTEFITQVLTST-GDKHVYKTQ-LNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK +QVL D Y TQ + V ++ SSPNIAKPF +GH R TV+G+ +A
Sbjct: 83 LDKAAISSQVLKQVLSDGSAYATQNIGEGRNVAIDMSSPNIAKPFSIGHLRSTVIGDSLA 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
N+ + + V +N+LGDWG QFG+L + K+ + + P+D L K YV+ N A+
Sbjct: 143 NIFDKIGYHPVKINHLGDWGKQFGMLIVAYKKWGNEEA-VRAHPIDELLKLYVRINAEAE 201
Query: 155 INPDVQEQA 163
+P V E+A
Sbjct: 202 TDPSVDEEA 210
>sp|Q8E2R1|SYR_STRA3 Arginine--tRNA ligase OS=Streptococcus agalactiae serotype III
(strain NEM316) GN=argS PE=3 SV=1
Length = 563
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 37 VDKTEFITQVLTST-GDKHVYKTQ-LNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK +QVL D Y TQ + V ++ SSPNIAKPF +GH R TV+G+ +A
Sbjct: 83 LDKAAISSQVLKQVLSDGSAYATQNIGEGRNVAIDMSSPNIAKPFSIGHLRSTVIGDSLA 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
N+ + + V +N+LGDWG QFG+L + K+ + + P+D L K YV+ N A+
Sbjct: 143 NIFDKIGYHPVKINHLGDWGKQFGMLIVAYKKWGNEEA-VRAHPIDELLKLYVRINAEAE 201
Query: 155 INPDVQEQA 163
+P V E+A
Sbjct: 202 TDPSVDEEA 210
>sp|Q3JYM1|SYR_STRA1 Arginine--tRNA ligase OS=Streptococcus agalactiae serotype Ia
(strain ATCC 27591 / A909 / CDC SS700) GN=argS PE=3 SV=1
Length = 563
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 37 VDKTEFITQVLTST-GDKHVYKTQ-LNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK +QVL D Y TQ + V ++ SSPNIAKPF +GH R TV+G+ +A
Sbjct: 83 LDKAAISSQVLKQVLSDGSAYATQNIGEGRNVAIDMSSPNIAKPFSIGHLRSTVIGDSLA 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
N+ + + V +N+LGDWG QFG+L + K+ + + P+D L K YV+ N A+
Sbjct: 143 NIFDKIGYHPVKINHLGDWGKQFGMLIVAYKKWGNEEA-VRAHPIDELLKLYVRINAEAE 201
Query: 155 INPDVQEQA 163
+P V E+A
Sbjct: 202 TDPSVDEEA 210
>sp|Q9CE12|SYR_LACLA Arginine--tRNA ligase OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=argS PE=3 SV=1
Length = 564
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 109/237 (45%), Gaps = 38/237 (16%)
Query: 1 MVKTFTIHYHIIDG--SENINIRGGTQFHIDDDNVILPVDK----TEFITQVLTSTGDKH 54
+ KT II G +E I+ +G + V +DK +E I +VLT +H
Sbjct: 46 LAKTLRKSPQIIAGEIAEKIDTKGFEKVIAVGPYVNFFLDKNATASEVIREVLTEG--EH 103
Query: 55 VYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWG 114
+ V ++ S+PNIAKPF +GH R TV+G+ +A + + +N+LGDWG
Sbjct: 104 YGDANIGQGGNVPIDMSAPNIAKPFSIGHLRSTVIGDSIAKIYEKLGYQPIKINHLGDWG 163
Query: 115 TQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVK 174
QFGLL K+ + T + +P+D L K YV KIN + +E
Sbjct: 164 KQFGLLITAYKKYGDEAT-ITANPIDELLKLYV------KINAEAKE------------- 203
Query: 175 ANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQVTLNELRGTYERLGIHF 230
+P+V E+ F ++E G + L W F V+L E Y +LG+ F
Sbjct: 204 -------DPEVDEEGRQWFLKMEQGDEEALRIWKW--FSDVSLIEFNRIYGKLGVSF 251
>sp|A8FQM2|SYR_SHESH Arginine--tRNA ligase OS=Shewanella sediminis (strain HAW-EB3)
GN=argS PE=3 SV=1
Length = 581
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 34/198 (17%)
Query: 37 VDKTEFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANL 96
+D+ +Q++ + D H+ QL VVV++SSPN+AK HVGH R T++G+ V
Sbjct: 91 IDENALASQLMAALNDDHL-GIQLPEPQTVVVDYSSPNLAKEMHVGHLRSTIIGDSVVRA 149
Query: 97 SNYFANNVVCLNYLGDWGTQFGLLQIGLKEL---NIKHTDLEQSPLDVLYKAYVKANELA 153
+ +NV+ N++GDWGTQFG+L ++EL N + +E S L+ Y+A A
Sbjct: 150 LEFQGHNVIRQNHVGDWGTQFGMLLAYMEELRAENGEQAQMELSDLETFYRA-------A 202
Query: 154 KINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQ 213
K+ D E D +A + L+ G + K W +F
Sbjct: 203 KVRFDESE----------------------DFAIRARKLVVSLQSGDEYCN-KLWREFND 239
Query: 214 VTLNELRGTYERLGIHFS 231
++L+ YERLG+ +
Sbjct: 240 ISLSHCHDVYERLGVSLT 257
>sp|B9DW76|SYR_STRU0 Arginine--tRNA ligase OS=Streptococcus uberis (strain ATCC BAA-854
/ 0140J) GN=argS PE=3 SV=1
Length = 562
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 32/197 (16%)
Query: 37 VDKTEFITQVLTSTGDKHVYKTQLNCTD--KVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK+ +VL + + Q + D V ++ SSPNIAKPF VGH R TV+ + +
Sbjct: 83 LDKSSISKEVLEAVIKEKANYGQQHIGDGQNVTLDMSSPNIAKPFSVGHLRSTVIADAIG 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
++ + N + +N+LGDWG QFG+L + K + T +E +P+D L K YV +
Sbjct: 143 HIYSKLGYNSIRINHLGDWGKQFGMLIVAYKLWGDRAT-VEANPIDELLKLYV------R 195
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQ 213
IN + +E NP++ EQA F++LE G K W F+
Sbjct: 196 INAEAEE--------------------NPELDEQARQWFKKLEDGDKEAWDLWQW--FRD 233
Query: 214 VTLNELRGTYERLGIHF 230
+L E Y++L + F
Sbjct: 234 ESLVEFNRIYDKLDVSF 250
>sp|C0MGC8|SYR_STRS7 Arginine--tRNA ligase OS=Streptococcus equi subsp. zooepidemicus
(strain H70) GN=argS PE=3 SV=1
Length = 563
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 30/196 (15%)
Query: 37 VDKTEFITQVLTST-GDKHVYKTQLNCTDK-VVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK QVLT D Y Q + + ++ SSPNIAKPF +GH R TV+G+ +A
Sbjct: 83 LDKASISAQVLTQVIADGADYAQQDEGQGRHIAIDMSSPNIAKPFSIGHLRSTVIGDSLA 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
++ V +N+LGDWG QFG+L + K+ ++ P+D L K YV +
Sbjct: 143 HIFAKMGYKPVKINHLGDWGKQFGMLIVAYKKWG-NEAAVQAHPIDELLKLYV------R 195
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQV 214
IN + A+ +P + E+A F++LE G T+ W F+
Sbjct: 196 INAE--------------------AETDPSLDEEAREWFRRLEEGDQEA-TELWQWFRDE 234
Query: 215 TLNELRGTYERLGIHF 230
+L E Y++LG+ F
Sbjct: 235 SLIEFNRLYDQLGVSF 250
>sp|Q02W95|SYR_LACLS Arginine--tRNA ligase OS=Lactococcus lactis subsp. cremoris (strain
SK11) GN=argS PE=3 SV=1
Length = 564
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 109/237 (45%), Gaps = 38/237 (16%)
Query: 1 MVKTFTIHYHIIDG--SENINIRGGTQFHIDDDNVILPVDK----TEFITQVLTSTGDKH 54
+ KT II G +E I+ +G + V +DK +E I +VLT +H
Sbjct: 46 LAKTLRKSPQIIAGEIAEKIDTKGFEKVIAVGPYVNFFLDKNATASEVIREVLTEG--EH 103
Query: 55 VYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWG 114
+ V ++ S+PNIAKPF +GH R TV+G+ +A + + +N+LGDWG
Sbjct: 104 YGDANIGEGGNVPIDMSAPNIAKPFSIGHLRSTVIGDSIAKIYEKLGYQPIKINHLGDWG 163
Query: 115 TQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVK 174
QFGLL K+ + T + +P+D L K YV KIN + +E
Sbjct: 164 KQFGLLITAYKKYGDEAT-ITANPIDELLKLYV------KINAEAKE------------- 203
Query: 175 ANDLAKINPDVQEQASNIFQQLECG-KNTLHTKDWLDFQQVTLNELRGTYERLGIHF 230
+P+V E+ F ++E G + L W F V+L E Y +LG+ F
Sbjct: 204 -------DPEVDEEGRQWFLKMEQGDEEALRIWKW--FSDVSLIEFNRIYGKLGVTF 251
>sp|A4VYA3|SYR_STRSY Arginine--tRNA ligase OS=Streptococcus suis (strain 05ZYH33)
GN=argS PE=3 SV=1
Length = 562
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 37 VDKTEFITQVLTST-GDKHVY-KTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK QVLT +K Y K + V ++ SSPNIAKPF VGH R TV+G+ +A
Sbjct: 83 LDKAAISHQVLTDVITEKDQYGKLNIGQGRNVTIDMSSPNIAKPFSVGHLRSTVIGDALA 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
N+ + +N+LGDWG QFG+L + K K +E P+ L K YV +
Sbjct: 143 NIHEKLGYKPIRINHLGDWGKQFGMLIVAYKLWGDKAA-VEADPISELLKLYV------R 195
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQV 214
IN + +E+ P++ ++A F++LE G H W F+
Sbjct: 196 INAEAEEK--------------------PELDDEARQWFKKLEDGDPEAHEL-WQWFRDE 234
Query: 215 TLNELRGTYERLGIHF 230
+L E Y++L + F
Sbjct: 235 SLVEFNRIYDKLDVTF 250
>sp|A4W4J9|SYR_STRS2 Arginine--tRNA ligase OS=Streptococcus suis (strain 98HAH33)
GN=argS PE=3 SV=1
Length = 562
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 37 VDKTEFITQVLTST-GDKHVY-KTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
+DK QVLT +K Y K + V ++ SSPNIAKPF VGH R TV+G+ +A
Sbjct: 83 LDKAAISHQVLTDVITEKDQYGKLNIGQGRNVTIDMSSPNIAKPFSVGHLRSTVIGDALA 142
Query: 95 NLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154
N+ + +N+LGDWG QFG+L + K K +E P+ L K YV +
Sbjct: 143 NIHEKLGYKPIRINHLGDWGKQFGMLIVAYKLWGDKAA-VEADPISELLKLYV------R 195
Query: 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQV 214
IN + +E+ P++ ++A F++LE G H W F+
Sbjct: 196 INAEAEEK--------------------PELDDEARQWFKKLEDGDPEAHEL-WQWFRDE 234
Query: 215 TLNELRGTYERLGIHF 230
+L E Y++L + F
Sbjct: 235 SLVEFNRIYDKLDVTF 250
>sp|B5XJ77|SYR_STRPZ Arginine--tRNA ligase OS=Streptococcus pyogenes serotype M49
(strain NZ131) GN=argS PE=3 SV=1
Length = 563
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 32/192 (16%)
Query: 40 TEFITQVLTSTGDKHVYKTQLNCTDK-VVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSN 98
++ + QV+T+ D Y Q + V ++ SSPNIAKPF +GH R TV+G+ +AN+
Sbjct: 90 SQVLEQVITAGSD---YAQQDEGQGRNVAIDMSSPNIAKPFSIGHLRSTVIGDSLANIFA 146
Query: 99 YFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPD 158
V +N+LGDWG QFG+L + K+ ++ P+D L K YV+ N A
Sbjct: 147 KMGYQPVKINHLGDWGKQFGMLIVAYKKWG-DEAAVQAHPIDELLKLYVRINAEA----- 200
Query: 159 VQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNE 218
+I+P V E+A F++LE G T+ W F+ +L E
Sbjct: 201 ---------------------EIDPTVDEEAREWFRKLEDGDKE-ATELWQWFRDESLLE 238
Query: 219 LRGTYERLGIHF 230
Y++L + F
Sbjct: 239 FNRLYDQLHVTF 250
>sp|Q896N5|SYR_CLOTE Arginine--tRNA ligase OS=Clostridium tetani (strain Massachusetts /
E88) GN=argS PE=3 SV=1
Length = 563
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 28/166 (16%)
Query: 65 KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGL 124
K ++E+SSPNIAKPFHVGH T +GN + + + + LN+LGDWGTQFG L
Sbjct: 112 KALIEYSSPNIAKPFHVGHLFSTAIGNALYKIFTFEGYDCERLNHLGDWGTQFGKLIAAY 171
Query: 125 KELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPD 184
K + LE+ P+ L + YVK ++ A+ +P ++E+ L
Sbjct: 172 KRW-VDEEALEKEPIKELLRIYVKFHDEAEKDPALEEEGRLH------------------ 212
Query: 185 VQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHF 230
F++LE G+ K W F++++L E Y L + F
Sbjct: 213 --------FKRLEDGEEE-EVKLWKKFRELSLKEFEKVYHMLNVEF 249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,995,112
Number of Sequences: 539616
Number of extensions: 3647599
Number of successful extensions: 11268
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 10355
Number of HSP's gapped (non-prelim): 833
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)