Query psy6240
Match_columns 233
No_of_seqs 166 out of 1376
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 21:21:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7u_A Arginyl-tRNA synthetase 100.0 1.7E-51 5.9E-56 398.9 17.0 210 1-232 75-290 (607)
2 2zue_A Arginyl-tRNA synthetase 100.0 3E-48 1E-52 377.7 14.0 209 1-232 49-266 (629)
3 1iq0_A Arginyl-tRNA synthetase 100.0 6.5E-44 2.2E-48 345.1 18.9 189 1-232 43-236 (592)
4 3fnr_A Arginyl-tRNA synthetase 100.0 4E-40 1.4E-44 310.6 15.1 160 35-232 1-164 (464)
5 3kfl_A Methionyl-tRNA syntheta 99.5 8E-15 2.7E-19 140.9 7.9 65 56-120 17-82 (564)
6 1li5_A Cysrs, cysteinyl-tRNA s 99.5 4.7E-14 1.6E-18 132.7 10.7 55 62-116 19-73 (461)
7 4dlp_A Aminoacyl-tRNA syntheta 99.5 8E-14 2.7E-18 132.9 10.7 59 62-120 23-81 (536)
8 1wkb_A Leucyl-tRNA synthetase; 99.5 4.5E-14 1.5E-18 140.7 6.1 62 63-124 33-94 (810)
9 3c8z_A Cysteinyl-tRNA syntheta 99.4 2.2E-13 7.6E-18 126.3 9.6 55 63-117 37-91 (414)
10 2d5b_A Methionyl-tRNA syntheta 99.3 3.8E-12 1.3E-16 119.9 9.5 55 63-117 2-56 (500)
11 2csx_A Methionyl-tRNA syntheta 99.3 6.9E-12 2.4E-16 118.3 9.3 55 63-117 4-58 (497)
12 3h99_A Methionyl-tRNA syntheta 99.3 1.6E-11 5.3E-16 117.7 10.8 60 61-120 15-74 (560)
13 3tqo_A Cysteinyl-tRNA syntheta 99.2 2.8E-11 9.5E-16 113.9 10.9 56 62-117 22-77 (462)
14 1irx_A Lysyl-tRNA synthetase; 99.2 2.3E-12 7.9E-17 122.7 2.2 46 69-114 21-69 (523)
15 2x1l_A Methionyl-tRNA syntheta 99.2 8.6E-11 2.9E-15 111.4 10.8 56 62-117 10-65 (524)
16 4arc_A Leucine--tRNA ligase; l 99.0 9.5E-10 3.3E-14 110.5 9.7 57 64-120 53-109 (880)
17 2v0c_A Aminoacyl-tRNA syntheta 98.9 1.5E-09 5.2E-14 109.1 8.8 57 63-120 33-89 (878)
18 1ile_A Ilers, isoleucyl-tRNA s 98.9 7.3E-10 2.5E-14 110.6 6.3 59 63-121 37-95 (821)
19 1rqg_A Methionyl-tRNA syntheta 98.9 4.7E-09 1.6E-13 103.5 10.7 56 64-119 2-58 (722)
20 3sp1_A Cysteinyl-tRNA syntheta 98.8 7.5E-09 2.6E-13 98.2 6.8 55 65-119 42-96 (501)
21 2o5r_A Glutamyl-tRNA synthetas 98.8 1.5E-09 5.1E-14 102.6 1.6 63 63-130 10-78 (481)
22 1gax_A Valrs, valyl-tRNA synth 98.7 3.4E-08 1.2E-12 99.2 11.0 57 62-118 32-88 (862)
23 3gdz_A Arginyl-tRNA synthetase 98.7 5.4E-09 1.9E-13 80.0 2.6 48 1-50 50-102 (109)
24 3u1f_A Methionyl-tRNA syntheta 98.7 3.9E-08 1.3E-12 93.3 8.2 57 62-118 7-63 (542)
25 1ffy_A Isoleucyl-tRNA syntheta 98.7 4.4E-08 1.5E-12 99.0 8.6 59 63-121 47-105 (917)
26 1wz2_A Leucyl-tRNA synthetase; 98.5 1.1E-07 3.7E-12 96.6 5.7 60 64-123 34-93 (967)
27 3al0_C Glutamyl-tRNA(Gln) amid 98.2 4E-07 1.4E-11 88.0 3.6 75 52-131 118-195 (592)
28 1nzj_A Hypothetical protein YA 96.5 0.0012 4E-08 58.6 2.8 64 66-132 6-72 (298)
29 4gri_A Glutamate--tRNA ligase; 96.1 0.0017 5.8E-08 61.6 2.0 32 64-96 23-54 (512)
30 3aii_A Glutamyl-tRNA synthetas 95.6 0.0043 1.5E-07 59.4 2.2 47 63-112 94-140 (553)
31 1j09_A Glutamyl-tRNA synthetas 95.3 0.0057 1.9E-07 57.4 1.9 24 72-95 7-30 (468)
32 2cfo_A Glutamyl-tRNA synthetas 95.2 0.0071 2.4E-07 57.1 2.3 37 72-113 7-43 (492)
33 1qtq_A GLNRS, protein (glutami 95.2 0.0095 3.2E-07 57.0 3.1 46 65-113 26-71 (553)
34 4g6z_A Glutamate-tRNA ligase; 95.2 0.013 4.4E-07 55.3 3.9 65 63-130 23-90 (490)
35 3afh_A Glutamyl-tRNA synthetas 95.0 0.0075 2.6E-07 56.9 1.9 32 64-96 24-55 (488)
36 2ja2_A Glutamyl-tRNA synthetas 95.0 0.0079 2.7E-07 56.9 1.9 40 65-107 6-45 (498)
37 2hz7_A Glutaminyl-tRNA synthet 94.2 0.022 7.6E-07 57.0 3.1 46 65-113 66-111 (851)
38 2el7_A Tryptophanyl-tRNA synth 88.9 0.15 5E-06 45.7 1.8 39 70-113 5-44 (337)
39 2dlc_X Tyrosyl-tRNA synthetase 87.8 0.35 1.2E-05 44.1 3.6 38 70-113 43-80 (394)
40 2g36_A Tryptophanyl-tRNA synth 87.7 0.25 8.7E-06 44.2 2.6 43 70-117 16-58 (340)
41 2cyb_A Tyrosyl-tRNA synthetase 87.6 0.31 1.1E-05 43.2 3.0 38 70-113 36-73 (323)
42 1i6k_A TRPRS, tryptophanyl-tRN 86.0 0.3 1E-05 43.5 2.0 38 70-113 5-42 (328)
43 1n3l_A Tyrosyl-tRNA synthetase 85.2 0.58 2E-05 42.3 3.6 38 70-113 39-76 (372)
44 1yi8_B Tryptophanyl-tRNA synth 83.2 0.39 1.3E-05 43.2 1.5 41 70-118 26-68 (351)
45 2ts1_A Tyrosyl-tRNA synthetase 81.9 1.1 3.9E-05 41.2 4.1 42 70-117 34-76 (419)
46 3tzl_A Tryptophanyl-tRNA synth 81.3 0.45 1.5E-05 42.3 1.2 38 70-113 7-44 (322)
47 1y42_X Tyrosyl-tRNA synthetase 81.1 1.2 3.9E-05 40.7 3.8 39 70-114 68-107 (392)
48 3hzr_A Tryptophanyl-tRNA synth 80.1 1.2 4.2E-05 40.5 3.7 39 70-114 86-125 (386)
49 2yxn_A Tyrosyl-tRNA synthetase 80.0 1.2 4E-05 39.5 3.4 41 70-116 37-78 (322)
50 1jil_A Tyrrs, tyrosyl-tRNA syn 79.7 1.2 4E-05 41.0 3.4 42 70-117 36-78 (420)
51 3a04_A Tryptophanyl-tRNA synth 77.8 1.4 4.7E-05 39.9 3.2 39 70-114 74-112 (372)
52 2cya_A Tyrosyl-tRNA synthetase 77.1 1.5 5.1E-05 39.5 3.2 40 70-115 39-78 (364)
53 2zp1_A Tyrosyl-tRNA synthetase 76.0 1.3 4.5E-05 39.0 2.5 38 70-113 32-69 (314)
54 2yy5_A Tryptophanyl-tRNA synth 74.6 0.97 3.3E-05 40.5 1.3 38 70-113 8-45 (348)
55 2pid_A Tyrosyl-tRNA synthetase 73.2 1.5 5.2E-05 39.4 2.2 39 70-114 50-89 (356)
56 3sz3_A Tryptophanyl-tRNA synth 71.0 1.3 4.5E-05 39.6 1.3 39 70-114 10-48 (341)
57 1h3f_A Tyrosyl-tRNA synthetase 70.8 1.7 5.7E-05 40.2 1.9 43 70-118 41-84 (432)
58 3vgj_A Tyrosyl-tRNA synthetase 70.8 2.7 9.4E-05 38.0 3.3 41 70-116 60-101 (373)
59 2j5b_A Tyrosyl-tRNA synthetase 70.8 2.9 0.0001 37.3 3.5 39 70-115 44-84 (348)
60 3jxe_A Tryptophanyl-tRNA synth 70.2 2.4 8.1E-05 38.7 2.8 39 70-114 77-116 (392)
61 2cyc_A Tyrosyl-tRNA synthetase 67.2 1.6 5.5E-05 39.5 1.0 39 70-113 37-75 (375)
62 3p0j_A Tyrosyl-tRNA synthetase 65.5 3.9 0.00013 40.0 3.4 41 70-116 44-85 (690)
63 2jan_A Tyrosyl-tRNA synthetase 64.4 4.2 0.00014 37.5 3.3 43 70-118 36-79 (432)
64 3n9i_A Tryptophanyl-tRNA synth 60.1 2.6 9E-05 37.7 1.0 37 70-114 19-57 (346)
65 3i05_A Tryptophanyl-tRNA synth 60.0 6.5 0.00022 35.8 3.6 38 70-113 82-121 (395)
66 3prh_A Tryptophanyl-tRNA synth 59.4 3.3 0.00011 37.8 1.5 39 70-114 39-77 (388)
67 3hv0_A Tryptophanyl-tRNA synth 58.9 7.4 0.00025 35.4 3.8 40 70-115 78-119 (393)
68 2ip1_A Tryptophanyl-tRNA synth 54.1 7.5 0.00026 35.8 3.0 38 70-113 106-145 (432)
69 3foc_A Tryptophanyl-tRNA synth 50.9 10 0.00036 35.1 3.4 39 70-114 95-135 (451)
70 1r6u_A Tryptophanyl-tRNA synth 49.4 11 0.00038 34.7 3.4 44 69-118 111-156 (437)
71 1r6t_A Tryptophanyl-tRNA synth 49.1 14 0.00049 34.3 4.1 43 70-118 159-203 (477)
72 3tze_A Tryptophanyl-tRNA synth 46.3 14 0.00048 33.7 3.5 39 70-114 105-145 (406)
73 4ar0_A Type IV pilus biogenesi 40.0 30 0.001 26.2 4.0 65 30-107 31-95 (128)
74 1sw5_A Osmoprotection protein 39.8 26 0.0009 29.2 4.1 46 78-123 7-55 (275)
75 2dew_X Protein-arginine deimin 36.6 25 0.00085 34.2 3.7 41 69-115 603-643 (671)
76 3r6u_A Choline-binding protein 36.0 36 0.0012 29.1 4.4 42 77-118 12-57 (284)
77 1r9l_A Glycine betaine-binding 35.1 30 0.001 29.6 3.7 40 77-117 8-50 (309)
78 3g5g_A Regulatory protein; tra 32.8 27 0.00093 24.7 2.6 35 69-103 9-43 (99)
79 3iwt_A 178AA long hypothetical 32.6 40 0.0014 26.4 3.8 33 89-121 41-73 (178)
80 3r3p_A MobIle intron protein; 30.0 65 0.0022 23.4 4.3 40 64-109 40-80 (105)
81 3o66_A Glycine betaine/carniti 29.9 71 0.0024 27.2 5.2 47 72-118 4-56 (282)
82 3p0j_A Tyrosyl-tRNA synthetase 29.1 38 0.0013 33.0 3.6 39 75-118 390-430 (690)
83 3llv_A Exopolyphosphatase-rela 25.6 45 0.0016 24.3 2.8 20 89-108 17-36 (141)
84 2b4l_A Glycine betaine-binding 24.7 80 0.0027 26.5 4.5 33 86-120 177-209 (268)
85 4gud_A Imidazole glycerol phos 24.4 54 0.0018 26.0 3.3 29 64-107 4-32 (211)
86 2rin_A Putative glycine betain 22.7 85 0.0029 26.5 4.3 23 86-108 19-41 (298)
87 3tem_A Ribosyldihydronicotinam 22.4 1.4E+02 0.0047 24.3 5.5 39 63-108 1-39 (228)
88 3saj_A Glutamate receptor 1; r 22.3 1.2E+02 0.0041 25.9 5.3 54 65-119 92-145 (384)
89 1sjq_A Polypyrimidine tract-bi 22.2 61 0.0021 23.5 2.9 43 69-112 9-51 (105)
90 3l6g_A Betaine ABC transporter 21.4 83 0.0028 26.0 4.0 24 85-108 13-36 (256)
91 2ekd_A Hypothetical protein PH 20.9 44 0.0015 27.6 2.0 52 61-129 13-64 (207)
92 3kbq_A Protein TA0487; structu 20.6 89 0.0031 24.8 3.8 41 82-123 18-58 (172)
93 1i7w_B E-cadherin, epithelial- 20.0 27 0.00092 27.6 0.5 19 106-124 127-145 (151)
No 1
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=1.7e-51 Score=398.91 Aligned_cols=210 Identities=29% Similarity=0.502 Sum_probs=177.1
Q ss_pred CccccccCchhhhhhhccccCC-C---ceEEecCCeEEEEeChhhHHHHHHhcc-CCCccccccc-CCCceEEEEecCCC
Q psy6240 1 MVKTFTIHYHIIDGSENINIRG-G---TQFHIDDDNVILPVDKTEFITQVLTST-GDKHVYKTQL-NCTDKVVVEFSSPN 74 (233)
Q Consensus 1 ~ak~~~~~p~~ia~~~~~~~~~-~---~~v~~~ggfINf~l~~~~~~~~vl~~~-~~~~~~g~~~-~~~~~v~VE~sSpN 74 (233)
|+|.++++|++|| ++|++..+ . +.++++||||||+|++.++.+.++..+ ..+..||... +++++|+|||||||
T Consensus 75 ~~k~~~~~P~~iA-~~i~~~l~~~~~i~~ve~ag~fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN 153 (607)
T 1f7u_A 75 RLRIKGANPKDLA-VQWAEKFPCGDFLEKVEANGPFIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPN 153 (607)
T ss_dssp GGCCTTCCHHHHH-HHHHHTCCCTTTEEEEEEETTEEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCB
T ss_pred HHHhcCCCHHHHH-HHHHHhccccCceeEEEEcCCEEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCC
Confidence 3589999999996 88877433 3 238999999999999999987777654 3456788753 67899999999999
Q ss_pred CCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHHHHHHHhhccCcCcccCCchHHHHHHHHHHHHhhc
Q psy6240 75 IAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK 154 (233)
Q Consensus 75 p~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~ 154 (233)
|+|||||||+||+||||+|||+|+++||+|+++|||||||+|||+|++|+.++|. ++.....|++++.++|+++++.++
T Consensus 154 ~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~-~~~~~~~~i~~l~~~Y~~~~~~~~ 232 (607)
T 1f7u_A 154 IAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGN-EEALVKDPIHHLFDVYVRINKDIE 232 (607)
T ss_dssp TTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCC-HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCc-hhhccCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999998874 233445678889999999888444
Q ss_pred cCCccccccchhHHHHHHHhhhHhhcCCchHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHhhhcCCcccC
Q psy6240 155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSV 232 (233)
Q Consensus 155 ~~~~~~~~~p~~~y~g~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~~~~~~~w~~~~~~sl~~~~~~~~rlgi~FD~ 232 (233)
.. |++++.| +.+.++|++++.+||+||++.. ++|+.++++++++|+++|++|||+||.
T Consensus 233 ~~-------~e~g~~~------------~~i~~~A~~~~~~le~gd~e~~-~~w~~~~~~~~~~~~~~~~~L~V~fD~ 290 (607)
T 1f7u_A 233 EE-------GDSIPLE------------QSTNGKAREYFKRMEDGDEEAL-KIWKRFREFSIEKYIDTYARLNIKYDV 290 (607)
T ss_dssp HS-------TTSSCHH------------HHSSHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred hc-------ccccccc------------HHHHHHHHHHHHHhhCCCHHHH-HHHHHHHHHHHHHHHHHHHHcCCccee
Confidence 32 1122222 4578999999999999999999 999999999999999999999999984
No 2
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=3e-48 Score=377.73 Aligned_cols=209 Identities=20% Similarity=0.325 Sum_probs=167.9
Q ss_pred CccccccCchhhhhhhccc-cCC--C---ceEEecCCeEEEEeChhhHHHHHHhcc-CCCccccccc-CCCceEEEEecC
Q psy6240 1 MVKTFTIHYHIIDGSENIN-IRG--G---TQFHIDDDNVILPVDKTEFITQVLTST-GDKHVYKTQL-NCTDKVVVEFSS 72 (233)
Q Consensus 1 ~ak~~~~~p~~ia~~~~~~-~~~--~---~~v~~~ggfINf~l~~~~~~~~vl~~~-~~~~~~g~~~-~~~~~v~VE~sS 72 (233)
|||.+|++|++|| ++|++ +.. . +.|+++||||||+|++.++.+.++..+ ..+..||... +++++|+|||||
T Consensus 49 lak~~~~~P~~iA-~~i~~~l~~~~~~~i~~vevagGfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~V~ve~~s 127 (629)
T 2zue_A 49 LAKLLKRPPIEIA-EKIVEKLKLNLPEGIKDVKAVNGYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTS 127 (629)
T ss_dssp HHHHHTSCHHHHH-HHHHHHHTTSCCTTEEEEEEETTEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCEEEEECCC
T ss_pred HHHHcCCCHHHHH-HHHHHHhhhccCCCeEEEEEcCCEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCEEEEEeeC
Confidence 5899999999996 88866 432 2 238999999999999998887877764 3456788753 678999999999
Q ss_pred CCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHHHHHHHhhccCcCcccCCchHHHHHHHHHHHHh
Q psy6240 73 PNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANEL 152 (233)
Q Consensus 73 pNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y~~~~~~ 152 (233)
|||+|||||||+||+||||+|||+|+++||+|.++|||||||+|||+|++++.++|.+.+ . ....+....
T Consensus 128 pN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~-~-------~~~~~~~~~-- 197 (629)
T 2zue_A 128 VNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFE-R-------IMNELRERG-- 197 (629)
T ss_dssp CCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHH-H-------HHHHHHHHT--
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcch-h-------hhhhhcccc--
Confidence 999999999999999999999999999999999999999999999999999987763210 0 000000000
Q ss_pred hccCCccccccchhHHHHHH-HhhhHhhcCCchHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHhhhcCCccc
Q psy6240 153 AKINPDVQEQAPLDVLYKAY-VKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFS 231 (233)
Q Consensus 153 ~~~~~~~~~~~p~~~y~g~y-~~~~~~~~~d~~~~~~a~~~~~~le~gd~~~~~~~w~~~~~~sl~~~~~~~~rlgi~FD 231 (233)
....|.|.|.|+| .++++.++++|++++++++++.++|+|| .+|+.++++++++|+++|++|||+||
T Consensus 198 -------~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd-----~~~~~~~~~~~~~f~~~~~~L~I~~D 265 (629)
T 2zue_A 198 -------LKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGE-----LYGRKLAEEVVRAQMVTTYKLGVKYD 265 (629)
T ss_dssp -------SCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSS-----SCCHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred -------cccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 1123445555553 4444578889999999999999999998 46999999999999999999999998
Q ss_pred C
Q psy6240 232 V 232 (233)
Q Consensus 232 ~ 232 (233)
.
T Consensus 266 ~ 266 (629)
T 2zue_A 266 L 266 (629)
T ss_dssp E
T ss_pred c
Confidence 4
No 3
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=6.5e-44 Score=345.14 Aligned_cols=189 Identities=21% Similarity=0.246 Sum_probs=163.0
Q ss_pred CccccccCchhhhhhhccccCC-C---ceEEecCCeEEEEeChhhHHHHHHhccC-CCcccccccCCCceEEEEecCCCC
Q psy6240 1 MVKTFTIHYHIIDGSENINIRG-G---TQFHIDDDNVILPVDKTEFITQVLTSTG-DKHVYKTQLNCTDKVVVEFSSPNI 75 (233)
Q Consensus 1 ~ak~~~~~p~~ia~~~~~~~~~-~---~~v~~~ggfINf~l~~~~~~~~vl~~~~-~~~~~g~~~~~~~~v~VE~sSpNp 75 (233)
|||.+|++|++|| ++|++..+ . +.|+++||||||+|++.++...++..+. .+..|| +|+||||||||
T Consensus 43 lak~~~~~P~~iA-~~i~~~l~~~~~~~~~~~~ggfiN~~l~~~~~~~~~~~~~~~~~~~~g-------~v~ve~~spn~ 114 (592)
T 1iq0_A 43 LAKELRKPPQAIA-QELKDRLPLPEFVEEAVPVGGYLNFRLRTEALLREALRPKAPFPRRPG-------VVLVEHTSVNP 114 (592)
T ss_dssp HHHHTTSCHHHHH-HHHHHTCCCCTTEEEEEEETTEEEEEECHHHHHHHHHSCCCCCCCEEE-------EEEEECCCCCT
T ss_pred HHHHcCCCHHHHH-HHHHHhccccCcEEEEEEcCCEEEEEECHHHHHHHHHHHHHhcCcccC-------eEEEEeeCCCC
Confidence 5899999999996 88877433 2 2389999999999999989888887753 445666 89999999999
Q ss_pred CCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHHHHHHHhhccCcCcccCCchHHHHHHHHHHHHhhcc
Q psy6240 76 AKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKI 155 (233)
Q Consensus 76 ~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~ 155 (233)
+|||||||+||+||||+|||+|+++||+|.++|||||||+||++++.++.+.|.+ +....+|++++++.|+++++
T Consensus 115 ~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d-~~~~~~~d~~~g~~y~~~~~---- 189 (592)
T 1iq0_A 115 NKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLT-WDGKEKYDHFAGRAYVRLHQ---- 189 (592)
T ss_dssp TSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCC-CCSSSCHHHHHHHHHHHHHH----
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCc-ccCCCCcchhHHHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999999999988753 22234678899999998877
Q ss_pred CCccccccchhHHHHHHHhhhHhhcCCchHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHhhhcCCcccC
Q psy6240 156 NPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSV 232 (233)
Q Consensus 156 ~~~~~~~~p~~~y~g~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~~~~~~~w~~~~~~sl~~~~~~~~rlgi~FD~ 232 (233)
.++++ ++.++++++++++|+|+ . +.+++.++++|+++|++|||+||.
T Consensus 190 ----------------------~~~~~-~~~~~a~~~~~~~e~g~--~-----~~~~~~~~~~~~~~~~~LgI~~D~ 236 (592)
T 1iq0_A 190 ----------------------DPEYE-RLQPAIEEVLHALERGE--L-----REEVNRILLAQMATMHALNARYDL 236 (592)
T ss_dssp ----------------------CTTTG-GGHHHHHHHHHHHHTTT--T-----HHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred ----------------------HHHhh-hHHHHHHHHHHhCCchH--H-----HHHHHHHHHHHHHHHHHcCCEeEE
Confidence 44444 68899999999999997 1 788999999999999999999984
No 4
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=4e-40 Score=310.56 Aligned_cols=160 Identities=17% Similarity=0.257 Sum_probs=127.9
Q ss_pred EEeChhhHHHHHHhcc-CCCcccccccCCCceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCch
Q psy6240 35 LPVDKTEFITQVLTST-GDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDW 113 (233)
Q Consensus 35 f~l~~~~~~~~vl~~~-~~~~~~g~~~~~~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~ 113 (233)
|+|+++++. .++..+ ..+..||....++++|+||||||||||||||||+||++|||+|||+++++||+|.|+||||||
T Consensus 1 ~~l~~~~~~-~~l~~i~~~~~~yG~~~~~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~ 79 (464)
T 3fnr_A 1 MSLSKTFLN-ELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDA 79 (464)
T ss_dssp --CCHHHHH-HHHHHHHHSGGGTTCCCCCSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred CEECHHHHH-HHHHHHHHhHHhcCCCCCCCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCc
Confidence 678887776 444443 456779975447899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccCcCcccCCchHHHHHHHHHHHHhhccCCccccccchhHHHHHHHhhhHhhcCCchHHHHHHHHH
Q psy6240 114 GTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIF 193 (233)
Q Consensus 114 G~Q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~p~~~y~g~y~~~~~~~~~d~~~~~~a~~~~ 193 (233)
|+|||+|+.|+..+ |.+. +.+ ...++|++.|.|+| +.+.+++++
T Consensus 80 G~Q~g~l~~~~~~~------------------y~~~--~~~----~~~~~p~~~y~g~~------------~~~~a~~~~ 123 (464)
T 3fnr_A 80 GNQIYLLGLSILLS------------------VKES--ILH----ENVEYPEQYYKGEY------------IVDLAKEAF 123 (464)
T ss_dssp HHHHHHHHHHHHHH------------------HHHH--TSC----CCCCCCSSCCCSHH------------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHH------------------HHHH--hcC----CCCCCchhhcCccH------------HHHHHHHHH
Confidence 99999999998554 3220 111 12356888999988 456677777
Q ss_pred HHHhc---CCchhhHHHHHHHHHHHHHHHHHHhhhcCCcccC
Q psy6240 194 QQLEC---GKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSV 232 (233)
Q Consensus 194 ~~le~---gd~~~~~~~w~~~~~~sl~~~~~~~~rlgi~FD~ 232 (233)
.+++. +|++.. .+|++++++++++++++|++|||+||+
T Consensus 124 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~l~V~fD~ 164 (464)
T 3fnr_A 124 EKFGKEFFSEENIP-SLADWAKDKMLVLIKQNLEQAKIKIDS 164 (464)
T ss_dssp HHHCGGGCSGGGHH-HHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred HhcchhhcCcHHHH-HHHHHHHHHHHHHHHHHHHHhCCCcee
Confidence 76532 345555 899999999999999999999999995
No 5
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.53 E-value=8e-15 Score=140.86 Aligned_cols=65 Identities=9% Similarity=0.091 Sum_probs=55.9
Q ss_pred ccccc-CCCceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHH
Q psy6240 56 YKTQL-NCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLL 120 (233)
Q Consensus 56 ~g~~~-~~~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l 120 (233)
||+.. .+++++.|...+|||+||+||||+|++++||+|||+++..||+|....+++|+|.++...
T Consensus 17 ~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~ 82 (564)
T 3kfl_A 17 QGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEA 82 (564)
T ss_dssp -------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHH
T ss_pred cCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHH
Confidence 55432 457899999999999999999999999999999999999999999999999999988543
No 6
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.51 E-value=4.7e-14 Score=132.68 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=52.3
Q ss_pred CCceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhH
Q psy6240 62 CTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQ 116 (233)
Q Consensus 62 ~~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q 116 (233)
.+++|.+.+|||||.|++||||+|++|+||+|+|+|++.||+|...++++|+|..
T Consensus 19 ~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~k 73 (461)
T 1li5_A 19 HAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDK 73 (461)
T ss_dssp STTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHH
T ss_pred CCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHH
Confidence 4678999999999999999999999999999999999999999999999999944
No 7
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.49 E-value=8e-14 Score=132.91 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=54.8
Q ss_pred CCceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHH
Q psy6240 62 CTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLL 120 (233)
Q Consensus 62 ~~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l 120 (233)
+++++.|-...|+|+||+||||+|++++||+|+|+++..||+|...++++|+|.++-..
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~ 81 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQS 81 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHH
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHH
Confidence 35689999999999999999999999999999999999999999999999999988544
No 8
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.45 E-value=4.5e-14 Score=140.65 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=58.3
Q ss_pred CceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHHHHHH
Q psy6240 63 TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGL 124 (233)
Q Consensus 63 ~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l~~~~ 124 (233)
.++++|++.+|||+|+|||||+||.++||+++|.++..||+|......+++|+++...+..+
T Consensus 33 ~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~ 94 (810)
T 1wkb_A 33 EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERI 94 (810)
T ss_dssp GGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999998776554
No 9
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.44 E-value=2.2e-13 Score=126.33 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=51.9
Q ss_pred CceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHH
Q psy6240 63 TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQF 117 (233)
Q Consensus 63 ~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~ 117 (233)
+.+|.+..++|+|.||+||||+|++++||+|+|+++..||+|....+++|+|..+
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki 91 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPL 91 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHH
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHH
Confidence 5678999999999999999999999999999999999999999999999999544
No 10
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.32 E-value=3.8e-12 Score=119.95 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=50.3
Q ss_pred CceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHH
Q psy6240 63 TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQF 117 (233)
Q Consensus 63 ~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~ 117 (233)
.+++.|...+|||+|++||||+|++++||+|+|.++..||+|...--++|.|..+
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i 56 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETV 56 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHH
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHH
Confidence 3589999999999999999999999999999999999999999988777777544
No 11
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.28 E-value=6.9e-12 Score=118.26 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=51.3
Q ss_pred CceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHH
Q psy6240 63 TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQF 117 (233)
Q Consensus 63 ~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~ 117 (233)
.+++.|...+|||+|++||||+|+++++|+++|.++..||+|.+.--++|.|..+
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i 58 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKI 58 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHH
Confidence 4689999999999999999999999999999999999999999998888888644
No 12
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.26 E-value=1.6e-11 Score=117.65 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=53.9
Q ss_pred CCCceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHH
Q psy6240 61 NCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLL 120 (233)
Q Consensus 61 ~~~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l 120 (233)
+..+++.|=-.-|+|+||+||||+|++++||+|+|.++..||+|.....++|.|.++-..
T Consensus 15 ~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~ 74 (560)
T 3h99_A 15 QVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLK 74 (560)
T ss_dssp --CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHH
Confidence 346778888888999999999999999999999999999999999999999999988544
No 13
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.24 E-value=2.8e-11 Score=113.89 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=53.4
Q ss_pred CCceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHH
Q psy6240 62 CTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQF 117 (233)
Q Consensus 62 ~~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~ 117 (233)
.+++|.+-.++|||.+++||||+|+.+++|+|+|.++..||+|.....+.|+|..+
T Consensus 22 ~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKI 77 (462)
T 3tqo_A 22 ESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKI 77 (462)
T ss_dssp STTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHH
T ss_pred CCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHH
Confidence 46789999999999999999999999999999999999999999999999999765
No 14
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.22 E-value=2.3e-12 Score=122.72 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=44.3
Q ss_pred EecC---CCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchh
Q psy6240 69 EFSS---PNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWG 114 (233)
Q Consensus 69 E~sS---pNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G 114 (233)
+|++ |||||++||||+|+++++|+++|.|++.||+|..+.+++|.|
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d 69 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYD 69 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcc
Confidence 5666 999999999999999999999999999999999999999999
No 15
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.17 E-value=8.6e-11 Score=111.43 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=49.7
Q ss_pred CCceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHH
Q psy6240 62 CTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQF 117 (233)
Q Consensus 62 ~~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~ 117 (233)
..+++.|--.-|||+|++||||+|++++||+|+|.++..||+|...--++|.|..+
T Consensus 10 ~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i 65 (524)
T 2x1l_A 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKM 65 (524)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHH
T ss_pred CCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHH
Confidence 34578888888999999999999999999999999999999999988888877644
No 16
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=98.99 E-value=9.5e-10 Score=110.54 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=50.6
Q ss_pred ceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHH
Q psy6240 64 DKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLL 120 (233)
Q Consensus 64 ~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l 120 (233)
++..|=-.-|||+|+|||||+|+.+++|+|+|.++..||+|.....++|+|.++-..
T Consensus 53 ~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~ 109 (880)
T 4arc_A 53 EKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGA 109 (880)
T ss_dssp CEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHH
T ss_pred CCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHH
Confidence 454444457999999999999999999999999999999999999999999998543
No 17
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=98.93 E-value=1.5e-09 Score=109.12 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=50.3
Q ss_pred CceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHH
Q psy6240 63 TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLL 120 (233)
Q Consensus 63 ~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l 120 (233)
++.++++ ..|||+|+|||||+||.+++|+|+|.++..||+|.....++|+|.++-..
T Consensus 33 ~k~~v~~-~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~ 89 (878)
T 2v0c_A 33 GKQYVLV-MFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENA 89 (878)
T ss_dssp -EEEEEE-CCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHH
T ss_pred CCEEEEC-CCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHH
Confidence 4456655 57999999999999999999999999999999999999999999988543
No 18
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=98.93 E-value=7.3e-10 Score=110.60 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=54.5
Q ss_pred CceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHHH
Q psy6240 63 TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQ 121 (233)
Q Consensus 63 ~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l~ 121 (233)
.++.+|-...|||+|+|||||+||.+|+|+++|..+..||+|......++.|..+-..+
T Consensus 37 ~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a 95 (821)
T 1ile_A 37 GPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEV 95 (821)
T ss_dssp SCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHH
T ss_pred CCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHH
Confidence 45778888999999999999999999999999999999999999999999999987543
No 19
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=98.90 E-value=4.7e-09 Score=103.53 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=52.5
Q ss_pred ceEEEEecCCCCCCCcccccchh-hhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHH
Q psy6240 64 DKVVVEFSSPNIAKPFHVGHFRG-TVLGNFVANLSNYFANNVVCLNYLGDWGTQFGL 119 (233)
Q Consensus 64 ~~v~VE~sSpNp~kpLHvGHlRn-aiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~ 119 (233)
++++|-...|+|+|++||||+|+ .+++|+++|.++..||+|....-+++.|..+-.
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~ 58 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISF 58 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHH
Confidence 47899999999999999999999 999999999999999999999999999987643
No 20
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=98.77 E-value=7.5e-09 Score=98.16 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=48.5
Q ss_pred eEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHH
Q psy6240 65 KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGL 119 (233)
Q Consensus 65 ~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~ 119 (233)
+|-+=.+.|+|.+++||||+|+.++.|+|+|.++..||+|.-...+.|+|.|.|.
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~ 96 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGD 96 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC---
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCC
Confidence 5555568899999999999999999999999999999999999999999999763
No 21
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.76 E-value=1.5e-09 Score=102.63 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=48.9
Q ss_pred CceEEEEecCCCCCCCcccccchhhhHHHHHHHH------HHHcCCeeEEEeeeCchhhHHHHHHHHHHhhccC
Q psy6240 63 TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANL------SNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIK 130 (233)
Q Consensus 63 ~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larl------l~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~ 130 (233)
.--|+++++||||||||||||+|+|++|+.+||. ||.- ++.+..++++++.|| ...+...|.+
T Consensus 10 ~~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRie--DtD~~r~~~~~~~~I---~~~l~wlGl~ 78 (481)
T 2o5r_A 10 HHHMVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIE--DTDLERSEREYEEKL---MESLRWLGLL 78 (481)
T ss_dssp ---CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBC--CSSCCSGGGHHHHHH---HHHHHHHTCC
T ss_pred cceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe--cCCccccHHHHHHHH---HHHHHHcCCC
Confidence 3468999999999999999999999999999999 5544 555678888999988 3444445544
No 22
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=98.74 E-value=3.4e-08 Score=99.20 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=52.5
Q ss_pred CCceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHH
Q psy6240 62 CTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFG 118 (233)
Q Consensus 62 ~~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~ 118 (233)
..++.+|-...|||||+|||||++|.+|+|+++|-.+..||+|....=.+..|..+-
T Consensus 32 ~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e 88 (862)
T 1gax_A 32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQ 88 (862)
T ss_dssp CSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHH
T ss_pred CCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHH
Confidence 356788999999999999999999999999999999999999999999999998554
No 23
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=98.69 E-value=5.4e-09 Score=80.04 Aligned_cols=48 Identities=8% Similarity=0.134 Sum_probs=36.5
Q ss_pred CccccccCchhhhhhhccc-cCCC---ceEEecC-CeEEEEeChhhHHHHHHhcc
Q psy6240 1 MVKTFTIHYHIIDGSENIN-IRGG---TQFHIDD-DNVILPVDKTEFITQVLTST 50 (233)
Q Consensus 1 ~ak~~~~~p~~ia~~~~~~-~~~~---~~v~~~g-gfINf~l~~~~~~~~vl~~~ 50 (233)
|||.+|++|++|| ++|+. +... +.|+++| |||||+|++.++.+.+ ..+
T Consensus 50 lak~~~~~P~~iA-~~i~~~l~~~~~i~~vevagpGFINf~l~~~~~~~~l-~~i 102 (109)
T 3gdz_A 50 VAKKLGMAPRQLA-EQVLSHLDLNGIANKVEIAGPGFINIFLDPAFLADNV-NRA 102 (109)
T ss_dssp HHHHTTSCHHHHH-HHHHHHCCCTTTEEEEEEETTTEEEEEECHHHHHHHH-HHH
T ss_pred HHHHhCCCHHHHH-HHHHHhcCcCCcEeEEEEeCCCeEEEEECHHHHHHHH-HHH
Confidence 5799999999996 88876 3322 2389999 8999999988876444 443
No 24
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=98.66 E-value=3.9e-08 Score=93.32 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=51.2
Q ss_pred CCceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHH
Q psy6240 62 CTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFG 118 (233)
Q Consensus 62 ~~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~ 118 (233)
+.++..|--.=|+++|++||||+|+.++.|+++|-++..||+|.-.-=++|.|..+-
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie 63 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVA 63 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHH
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHH
Confidence 466778888889999999999999999999999999999999998888888887653
No 25
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=98.65 E-value=4.4e-08 Score=98.99 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=54.8
Q ss_pred CceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHHH
Q psy6240 63 TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQ 121 (233)
Q Consensus 63 ~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l~ 121 (233)
.++.+|-...|||+|.|||||++|.+++|+++|-.+..||+|....-.+..|..+-..+
T Consensus 47 ~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a 105 (917)
T 1ffy_A 47 NETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQAL 105 (917)
T ss_dssp SCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHH
T ss_pred CCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999986544
No 26
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=98.47 E-value=1.1e-07 Score=96.60 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=55.2
Q ss_pred ceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHHHHH
Q psy6240 64 DKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIG 123 (233)
Q Consensus 64 ~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l~~~ 123 (233)
++.+|-...|||+|.|||||+||.+++|+++|-.+..||+|....=.+..|..+...+..
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~ 93 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAER 93 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHH
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999999999765543
No 27
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.25 E-value=4e-07 Score=87.97 Aligned_cols=75 Identities=15% Similarity=0.096 Sum_probs=48.2
Q ss_pred CCcccccccCCCceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCch---hhHHHHHHHHHHhhc
Q psy6240 52 DKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDW---GTQFGLLQIGLKELN 128 (233)
Q Consensus 52 ~~~~~g~~~~~~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~---G~Q~~~l~~~~~~~~ 128 (233)
.+..||+. ..++|++.|. |||||+|||||+|+|+++..+||- +-|-=+.|.-=++.- -.-+..+...+..+|
T Consensus 118 ~~~~~~~~--~~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlG 192 (592)
T 3al0_C 118 VGPKKIRR--CFELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDTERSSREYEQQILESLRWCG 192 (592)
T ss_dssp --CCCCCC--CCCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTT
T ss_pred cChhhccc--CCCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEecCcChhhccHHHHHHHHHHHHHcC
Confidence 45567763 3467999999 999999999999999999999984 445444444222211 011233445555566
Q ss_pred cCc
Q psy6240 129 IKH 131 (233)
Q Consensus 129 ~~~ 131 (233)
.+.
T Consensus 193 l~~ 195 (592)
T 3al0_C 193 LDW 195 (592)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 28
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=96.49 E-value=0.0012 Score=58.59 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=38.8
Q ss_pred EEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchh---hHHHHHHHHHHhhccCcC
Q psy6240 66 VVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWG---TQFGLLQIGLKELNIKHT 132 (233)
Q Consensus 66 v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G---~Q~~~l~~~~~~~~~~~~ 132 (233)
|++=| .|+|||+|||||+|++++....||-+ .|-=|.|.-=+++-- .-+..+...+..+|....
T Consensus 6 v~~RF-APsPtG~LHiG~~rtal~n~l~Ar~~--~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D 72 (298)
T 1nzj_A 6 YIGRF-APSPSGELHFGSLIAALGSYLQARAR--QGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWD 72 (298)
T ss_dssp CEEEE-CCCTTSCCCHHHHHHHHHHHHHHHHT--TCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCS
T ss_pred eEEEE-CcCCCCCccHHHHHHHHHHHHHHHhc--CCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCC
Confidence 33433 59999999999999999877777753 444444544444331 113334455555665443
No 29
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=96.14 E-value=0.0017 Score=61.58 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=26.3
Q ss_pred ceEEEEecCCCCCCCcccccchhhhHHHHHHHH
Q psy6240 64 DKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANL 96 (233)
Q Consensus 64 ~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larl 96 (233)
.+|.+=|. |+|||+|||||+|+|++-..+||-
T Consensus 23 ~~vrtRFA-PsPtG~LHiG~artAl~n~~~Ar~ 54 (512)
T 4gri_A 23 LSTRVRYA-PSPTGLQHIGGIRTALFNYFFAKS 54 (512)
T ss_dssp -CCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH
T ss_pred CceeEEeC-cCCCCcccHHHHHHHHHHHHHHHH
Confidence 35666555 999999999999999998888874
No 30
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.60 E-value=0.0043 Score=59.37 Aligned_cols=47 Identities=28% Similarity=0.512 Sum_probs=31.8
Q ss_pred CceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCc
Q psy6240 63 TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGD 112 (233)
Q Consensus 63 ~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD 112 (233)
+.+|+.=|. |.|+|+|||||+|++++-..+|| .+-|-=|.|.-=+||
T Consensus 94 ~g~v~tRFa-PsPtG~LHIGhaRtal~n~l~Ar--~~~G~~iLRieDtD~ 140 (553)
T 3aii_A 94 KGEVVLRFA-PNPSGPLHIGHARAAILNHEYAR--KYDGRLILRIEDTDP 140 (553)
T ss_dssp CSCCEEEEC-CCSSSSCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCG
T ss_pred CCceEEEeC-CCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECcCCc
Confidence 345666554 99999999999999999666665 233444444444444
No 31
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=95.30 E-value=0.0057 Score=57.44 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.7
Q ss_pred CCCCCCCcccccchhhhHHHHHHH
Q psy6240 72 SPNIAKPFHVGHFRGTVLGNFVAN 95 (233)
Q Consensus 72 SpNp~kpLHvGHlRnaiiGd~Lar 95 (233)
.|.|||+|||||+|++++--..||
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar 30 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWAR 30 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH
Confidence 499999999999999998777777
No 32
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=95.22 E-value=0.0071 Score=57.12 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=25.8
Q ss_pred CCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCch
Q psy6240 72 SPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDW 113 (233)
Q Consensus 72 SpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~ 113 (233)
.|.|||+|||||+|++++-...|| +|.+.-.-=|.|.
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar-----~~~G~filRieDt 43 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYAR-----HRGGKFILRIEDT 43 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCC
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEeeC
Confidence 499999999999999999544444 4444444444444
No 33
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=95.18 E-value=0.0095 Score=57.01 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=34.1
Q ss_pred eEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCch
Q psy6240 65 KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDW 113 (233)
Q Consensus 65 ~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~ 113 (233)
+|+.=| .|.|||+|||||+|++++-..+|| .+-|-=|.|.-=+|+.
T Consensus 26 ~v~tRF-aPSPtG~LHIGhaRtal~n~l~Ar--~~gG~fiLRieDTD~~ 71 (553)
T 1qtq_A 26 TVHTRF-PPEPNGYLHIGHAKSICLNFGIAQ--DYKGQCNLRFDDTNPV 71 (553)
T ss_dssp SCEEEE-CCCTTSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCGG
T ss_pred ceEEEe-CCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCch
Confidence 455544 599999999999999999777777 3455556666666653
No 34
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=95.16 E-value=0.013 Score=55.32 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=43.1
Q ss_pred CceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhh---HHHHHHHHHHhhccC
Q psy6240 63 TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGT---QFGLLQIGLKELNIK 130 (233)
Q Consensus 63 ~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~---Q~~~l~~~~~~~~~~ 130 (233)
..+|.+=|. |.|||+|||||+|++++-...||- ..|-=|.|.-=+++--. -...+...+...|..
T Consensus 23 ~~~v~~RFA-PSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~ 90 (490)
T 4g6z_A 23 TRPVRTRFA-PSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLD 90 (490)
T ss_dssp -CCCEEEEC-CCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCC
T ss_pred CCCceEEeC-CCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCC
Confidence 345777776 999999999999999998888874 45666666665555311 122344444445554
No 35
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=95.04 E-value=0.0075 Score=56.89 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=26.5
Q ss_pred ceEEEEecCCCCCCCcccccchhhhHHHHHHHH
Q psy6240 64 DKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANL 96 (233)
Q Consensus 64 ~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larl 96 (233)
++|++=|. |.|||+|||||+|++++--..||-
T Consensus 24 ~~v~~RFA-PsPtG~LHiG~~rtal~n~l~Ar~ 55 (488)
T 3afh_A 24 ELVRVRFA-PSPTGHLHVGGARTALFNWMFARK 55 (488)
T ss_dssp -CCEEEEC-CCCSSSCBHHHHHHHHHHHHHHHH
T ss_pred CCceEEEC-CCCCCCccHHHHHHHHHHHHHHHH
Confidence 45777776 999999999999999987777764
No 36
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=95.00 E-value=0.0079 Score=56.90 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=31.1
Q ss_pred eEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEE
Q psy6240 65 KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCL 107 (233)
Q Consensus 65 ~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~ 107 (233)
+|.+=|. |.|||+|||||+|+|++--..||- .-|-=+.|+
T Consensus 6 ~vr~RFA-PsPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRi 45 (498)
T 2ja2_A 6 TVRVRFC-PSPTGTPHVGLVRTALFNWAYARH--TGGTFVFRI 45 (498)
T ss_dssp CCEEEEC-CCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEECB
T ss_pred CeeEEEC-cCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEE
Confidence 4666666 999999999999999999988883 455444444
No 37
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=94.22 E-value=0.022 Score=56.97 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=32.4
Q ss_pred eEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCch
Q psy6240 65 KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDW 113 (233)
Q Consensus 65 ~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~ 113 (233)
+|+.=| .|.|||+|||||+|++++-..+|| .+-|-=|.|.-=+|+-
T Consensus 66 ~v~tRF-aPSPtG~LHIGhARtAL~n~l~Ar--~~gG~fiLRIEDTD~~ 111 (851)
T 2hz7_A 66 RVVTRF-PPDPSGYAHLGHVFASLLDFNTAR--QYGGQFNLRMDDTNPE 111 (851)
T ss_dssp SCEEEE-CCCSSSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCTT
T ss_pred ceEEEe-CCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECcCCcc
Confidence 455444 599999999999999999766676 3445455555555543
No 38
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=88.86 E-value=0.15 Score=45.73 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=27.8
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHHcC-CeeEEEeeeCch
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNYFA-NNVVCLNYLGDW 113 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G-~~V~r~nyinD~ 113 (233)
|+.--|||+||+||+..++ -.+.++ ...| |+| .+.|+||
T Consensus 5 y~G~~PTg~lHlGh~~g~l--~~~~~l-Q~~G~~~~--~~~IaD~ 44 (337)
T 2el7_A 5 LSGIQPSGEIHIGNYLGAI--KQWVAI-GEKLGRDA--FFCIVDY 44 (337)
T ss_dssp EEEECSCSCCBHHHHHTHH--HHHHHH-HHHHGGGE--EEEECGG
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHHH-HhcCCCCE--EEEEeCc
Confidence 5666799999999986554 233333 4567 887 6888997
No 39
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=87.77 E-value=0.35 Score=44.12 Aligned_cols=38 Identities=16% Similarity=-0.019 Sum_probs=27.5
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCch
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDW 113 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~ 113 (233)
|+.--|||.||+||++.++. .+.+...||+| ..-|+||
T Consensus 43 y~G~~PTG~LHlG~~~~al~----~~~~~q~g~~~--ii~I~D~ 80 (394)
T 2dlc_X 43 YWGTAPTGRPHCGYFVPMTK----LADFLKAGCEV--TVLLADL 80 (394)
T ss_dssp EEEECCCSCCBGGGHHHHHH----HHHHHHTTCEE--EEEECHH
T ss_pred EEEeCCCCCccHHHHHHHHH----HHHHHHcCCcE--EEEEcCC
Confidence 66667899999999876654 33333478875 5778884
No 40
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=87.71 E-value=0.25 Score=44.23 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=29.4
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHH
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQF 117 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~ 117 (233)
|+..-|||.||+||+..++. .+ +-|...||+|. +.|+||=..+
T Consensus 16 ~~G~~PTG~lHLGn~~g~l~--~~-~~lQ~~G~~~~--~~IaD~ha~t 58 (340)
T 2g36_A 16 LSGMRPTGKLHIGHLVGALE--NW-VKLQEEGNECF--YFVADWHALT 58 (340)
T ss_dssp EEEECCCSSCBHHHHHTHHH--HH-HHHHHTTCEEE--EEECHHHHHH
T ss_pred EEeeCCCCcccHHhHHHHHH--HH-HHHHHCCCCEE--EEEecceeec
Confidence 67889999999999865432 22 22556798864 5689964433
No 41
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=87.59 E-value=0.31 Score=43.16 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=24.9
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCch
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDW 113 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~ 113 (233)
|+.--|||+||+||+ .++. .+..+- .+||+ ....|+||
T Consensus 36 y~G~~PTg~lHlG~l-~~l~--~~~~lq-~~g~~--~~~~i~D~ 73 (323)
T 2cyb_A 36 YVGYEPSGEIHLGHM-MTVQ--KLMDLQ-EAGFE--IIVLLADI 73 (323)
T ss_dssp EEEECCCSCCBHHHH-HHHH--HHHHHH-HTTCE--EEEEECHH
T ss_pred EECcCCCCcchHHHH-HHHH--HHHHHH-HCCCc--EEEEECCc
Confidence 455579999999997 2322 233333 34776 57788887
No 42
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=85.98 E-value=0.3 Score=43.51 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=27.3
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCch
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDW 113 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~ 113 (233)
|+.--|||.||+||+..++ --+.++ .. ||++ .+.|+||
T Consensus 5 ysG~~PTG~lHlGn~vg~l--~~~~~l-Q~-g~~~--~~~IaD~ 42 (328)
T 1i6k_A 5 FSGIQPSGVITIGNYIGAL--RQFVEL-QH-EYNC--YFCIVDQ 42 (328)
T ss_dssp EEEECCCSCCBHHHHHHTH--HHHHHH-TT-TSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHHH-Hc-CCcE--EEEEeCc
Confidence 5667799999999987665 233333 33 8886 7889995
No 43
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=85.17 E-value=0.58 Score=42.31 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=26.9
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCch
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDW 113 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~ 113 (233)
|+.--|||.||+||+..++. +...++ .||++ ..-|+||
T Consensus 39 y~G~~PTG~lHlG~~~~~l~---~~~~~q-~g~~~--i~~I~D~ 76 (372)
T 1n3l_A 39 YWGTATTGKPHVAYFVPMSK---IADFLK-AGCEV--TILFADL 76 (372)
T ss_dssp EEEECCSSCCBGGGHHHHHH---HHHHHH-TTCEE--EEEECHH
T ss_pred EeCcCCCCcccHHHHHHHHH---HHHHHH-CCCCE--EEEEcCC
Confidence 45555999999999866655 444444 78875 5778884
No 44
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=83.18 E-value=0.39 Score=43.20 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=28.4
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHH--HHHcCCeeEEEeeeCchhhHHH
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANL--SNYFANNVVCLNYLGDWGTQFG 118 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larl--l~~~G~~V~r~nyinD~G~Q~~ 118 (233)
|+.--|||+||+||+..++ .+. |... |+| .+.|+||=..++
T Consensus 26 ysG~~PTG~lHLGn~~g~l-----~~~~~lQ~~-~~~--~~~IaD~ha~~~ 68 (351)
T 1yi8_B 26 LTGDRPTGALHLGHLAGSL-----QNRVRLQDE-AEL--FVLLADVQALTD 68 (351)
T ss_dssp EEEECCSSCCBHHHHHHTH-----HHHHHHTSS-SEE--EEEECHHHHHHH
T ss_pred EEeeCCCCCccHHHHHHHH-----HHHHHHHHh-CCe--EEEEecchhhcC
Confidence 7788899999999986543 344 3333 665 788999844443
No 45
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=81.94 E-value=1.1 Score=41.18 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=27.5
Q ss_pred ecCCCCCCC-cccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHH
Q psy6240 70 FSSPNIAKP-FHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQF 117 (233)
Q Consensus 70 ~sSpNp~kp-LHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~ 117 (233)
|+.--||++ ||+||+= ++ -.+. -|..+||++ .+.|+||=..+
T Consensus 34 y~G~dPTg~sLHlGh~v-~l--~~l~-~lQ~~G~~~--i~lIgd~ta~i 76 (419)
T 2ts1_A 34 YCGFDPTADSLHIGHLA-TI--LTMR-RFQQAGHRP--IALVGGATGLI 76 (419)
T ss_dssp EEEECCSSSSCBGGGHH-HH--HHHH-HHHHTTCEE--EEEECTTGGGT
T ss_pred EEeeCCCCCCccHHHHH-HH--HHHH-HHHHCCCcE--EEEEcCceeEe
Confidence 788899999 9999964 21 1233 334468875 56677764433
No 46
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=81.30 E-value=0.45 Score=42.27 Aligned_cols=38 Identities=8% Similarity=0.409 Sum_probs=27.1
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCch
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDW 113 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~ 113 (233)
||.--|||.||+||+-.++. .+.++-+ ||++ .+.|+||
T Consensus 7 ysG~~PTg~lHlG~~lg~l~--~~~~lQ~--g~~~--~~~iaD~ 44 (322)
T 3tzl_A 7 LTGLQPSGDLHIGNYFGAIK--QMVDAQE--KSQM--FMFIANY 44 (322)
T ss_dssp EEEECCSSCCBHHHHHHTHH--HHHHTTT--TSCC--EEEECHH
T ss_pred EEccCCCccccHHHHHHHHH--HHHHHhc--CCCE--EEEEecC
Confidence 55667999999999854432 3555544 8876 6778888
No 47
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=81.08 E-value=1.2 Score=40.75 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=26.4
Q ss_pred ecCCCCCCC-cccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchh
Q psy6240 70 FSSPNIAKP-FHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWG 114 (233)
Q Consensus 70 ~sSpNp~kp-LHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G 114 (233)
|+.--|||+ ||+||+= ++. .+.++- .+||+| .+.|+||=
T Consensus 68 y~G~dPTg~sLHlGhlv-~l~--~l~~lQ-~~G~~~--~~lIgD~h 107 (392)
T 1y42_X 68 YVGIDPTAPSLHVGHLL-PLM--PLFWMY-LEGYKA--FTLIGGST 107 (392)
T ss_dssp EEEECCCSSSCBGGGHH-HHH--HHHHHH-HHTCEE--EEEECTTT
T ss_pred EEeecCCCCCccHHHHH-HHH--HHHHHH-HcCCcE--EEEEcCce
Confidence 788899999 9999975 222 234444 458875 55566653
No 48
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=80.13 E-value=1.2 Score=40.52 Aligned_cols=39 Identities=15% Similarity=0.039 Sum_probs=28.7
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHH-cCCeeEEEeeeCchh
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNY-FANNVVCLNYLGDWG 114 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~-~G~~V~r~nyinD~G 114 (233)
|+.--|||+||+||+ +|-.+.|-|.. .|..|.-. |+|+.
T Consensus 86 ysG~~PTG~lHLGh~----v~~~~~~~lQ~~~g~~v~i~--I~D~~ 125 (386)
T 3hzr_A 86 FIQKYPQKEVALEEY----ITLEFARYLQDAFNIQVIIQ--ILDDI 125 (386)
T ss_dssp EEEECCCSSCBGGGH----HHHHHHHHHHHHHCCEEEEE--ECHHH
T ss_pred EeccCCCCCccHHHH----HHHHHHHHHHHhcCCeEEEE--eCchH
Confidence 788899999999997 56533343444 58777766 89986
No 49
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=79.99 E-value=1.2 Score=39.48 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=27.7
Q ss_pred ecCCCCCCC-cccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhH
Q psy6240 70 FSSPNIAKP-FHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQ 116 (233)
Q Consensus 70 ~sSpNp~kp-LHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q 116 (233)
|+.--|||+ ||+||+= ++. .+.+ |...||++ .+.|+||=..
T Consensus 37 y~G~~PTg~slHlGh~l-~l~--~~~~-lQ~~g~~~--~~~i~D~~a~ 78 (322)
T 2yxn_A 37 VCGFDPTADSLHLGHLV-PLL--CLKR-FQQAGHKP--VALVGGATGL 78 (322)
T ss_dssp EEEECCSSSSCBHHHHH-HHH--HHHH-HHHTTCEE--EEEECTTGGG
T ss_pred EEeecCCCCcccHHHHH-HHH--HHHH-HHHcCCcE--EEEEccceee
Confidence 889999999 9999964 221 2333 34458875 6778887443
No 50
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=79.66 E-value=1.2 Score=41.02 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=27.4
Q ss_pred ecCCCCCCC-cccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHH
Q psy6240 70 FSSPNIAKP-FHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQF 117 (233)
Q Consensus 70 ~sSpNp~kp-LHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~ 117 (233)
|+.--||++ ||+||+= ++ -.+. -|..+||+| ...|+||=..+
T Consensus 36 y~G~dPTg~sLHlGh~v-~l--~~~~-~lQ~~G~~~--~~lIgd~ta~i 78 (420)
T 1jil_A 36 YCGADPTADSLHIGHLL-PF--LTLR-RFQEHGHRP--IVLIGGGTGMI 78 (420)
T ss_dssp EEEECCSSSSCBHHHHH-HH--HHHH-HHHHTTCEE--EEEECTTGGGT
T ss_pred EEeeCCCCCCccHHHHH-HH--HHHH-HHHHCCCcE--EEEEcCceeEe
Confidence 888999999 9999964 22 1233 334468875 56677764333
No 51
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=77.77 E-value=1.4 Score=39.92 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=28.1
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchh
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWG 114 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G 114 (233)
||.--|||+||+||. +|-.-...+.-.||+| .+.|.||=
T Consensus 74 ~sG~~PTG~lHLGhy----v~~~~~~~lq~~~~~~--~~~IaD~h 112 (372)
T 3a04_A 74 LTGFMPSGKFHFGHK----LTVDQLIYLQKNGFKV--FVAIADAE 112 (372)
T ss_dssp EEEECCCSCCBHHHH----HHHHHHHHHHHTTCEE--EEEECHHH
T ss_pred EeCcCCCcHhHHHHH----HHHHHHHHHHhCCCeE--EEEEecch
Confidence 678889999999996 4433444555568887 46678873
No 52
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=77.06 E-value=1.5 Score=39.50 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=27.2
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhh
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGT 115 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~ 115 (233)
|+.--|||+||+|| ..++. .+.++- .+||+| ...|+||=.
T Consensus 39 y~G~~PTg~lHlG~-l~~l~--~~~~lQ-~~G~~~--~~~iaD~~a 78 (364)
T 2cya_A 39 YIGYEPSGVAHIGW-LVWMY--KVKDLV-EAGVDF--SVLEATWHA 78 (364)
T ss_dssp EEEECCCSSCBTHH-HHHHH--HHHHHH-HTTCEE--EEEECHHHH
T ss_pred EeccCCCCCccHhH-HHHHH--HHHHHH-HCCCCE--EEEEeCcch
Confidence 67778999999999 44432 344444 458875 677888633
No 53
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=75.97 E-value=1.3 Score=38.98 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=24.9
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCch
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDW 113 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~ 113 (233)
|+.--|||+||+|| ..++. .+.++- ..||+| ..-|+||
T Consensus 32 y~G~~PTg~lHlGh-l~~l~--~~~~lQ-~~g~~~--~~~i~D~ 69 (314)
T 2zp1_A 32 YIGFEPSGKIHLGH-YLQIK--KMIDLQ-NAGFDI--IILLADL 69 (314)
T ss_dssp EEEECCCSSCBHHH-HHHHH--HHHHHH-HTTEEE--EEEECHH
T ss_pred EEccCCCCCcchhh-HHHHH--HHHHHH-HCCCCE--EEEEecc
Confidence 78888999999999 55543 233333 347664 5566665
No 54
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=74.62 E-value=0.97 Score=40.54 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=26.8
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCch
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDW 113 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~ 113 (233)
|+.--|||.||+||...++ .-..+ |.. ||++ .+.|+||
T Consensus 8 ~sG~~PTG~lHLGn~vg~l--~~~~~-lQ~-~~~~--~~~IaD~ 45 (348)
T 2yy5_A 8 LTGIQASGKQHLGNYLGVM--QSLIE-LQE-QCQL--FVFVADL 45 (348)
T ss_dssp EEEECCCTTCBHHHHHHTG--GGHHH-HHH-HSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHH-HHh-CCcE--EEEEcCh
Confidence 6777899999999987665 22223 334 7764 6888886
No 55
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=73.20 E-value=1.5 Score=39.38 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=25.9
Q ss_pred ecCCCCCCC-cccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchh
Q psy6240 70 FSSPNIAKP-FHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWG 114 (233)
Q Consensus 70 ~sSpNp~kp-LHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G 114 (233)
|+.--|||+ ||+||+= ++. .+.++- ..||+| .+.|+||=
T Consensus 50 y~G~~PTg~sLHLGhl~-~l~--~~~~lQ-~~G~~~--~~lIaD~h 89 (356)
T 2pid_A 50 YCGFDPTADSLHVGHLL-ALL--GLFHLQ-RAGHNV--IALVGGAT 89 (356)
T ss_dssp EEEECCSSSSCBHHHHH-HHH--HHHHHH-HTTCEE--EEEECTTG
T ss_pred EEeecCCCCcccHHHHH-HHH--HHHHHH-HCCCcE--EEEEccce
Confidence 889999998 9999943 222 233333 358775 56677764
No 56
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=71.05 E-value=1.3 Score=39.60 Aligned_cols=39 Identities=13% Similarity=0.304 Sum_probs=27.0
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchh
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWG 114 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G 114 (233)
|+.--|||+||+||.=.++ .-+..+-+ ||+ ..+.|.||=
T Consensus 10 ~sG~~PTG~lHLGhy~g~l--~~~~~lQ~--~~~--~~~~iaD~h 48 (341)
T 3sz3_A 10 LSGVQPSGELSIGNYLGAL--RQWQQMQD--DYD--CQYCVVDLH 48 (341)
T ss_dssp EEEECSSSCCBHHHHHHTG--GGHHHHHH--HSE--EEEEECHHH
T ss_pred EeCcCCCCcccHHHHHHHH--HHHHHHHh--cCe--EEEEEecce
Confidence 6777899999999975444 33444444 465 458889984
No 57
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=70.84 E-value=1.7 Score=40.20 Aligned_cols=43 Identities=16% Similarity=0.382 Sum_probs=26.7
Q ss_pred ecCCCCCCC-cccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHH
Q psy6240 70 FSSPNIAKP-FHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFG 118 (233)
Q Consensus 70 ~sSpNp~kp-LHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~ 118 (233)
|+.--|||+ ||+||+= ++ -.+.++ ..+||+ ..+.|+||=..++
T Consensus 41 y~G~dPTg~sLHlGh~v-~l--~~l~~l-Q~~G~~--~i~lIgD~ta~ig 84 (432)
T 1h3f_A 41 KLGADPTRPDLHLGHAV-VL--RKMRQF-QELGHK--VVLIIGDFTGMIG 84 (432)
T ss_dssp EEEECTTCCSCBHHHHH-HH--HHHHHH-HHTTCE--EEEEECCCC----
T ss_pred EEcccCCCCCCchhhHH-HH--HHHHHH-HHCCCC--EEEEEccceEEec
Confidence 788899997 9999974 21 223333 345887 5677899855554
No 58
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=70.80 E-value=2.7 Score=37.96 Aligned_cols=41 Identities=12% Similarity=0.300 Sum_probs=27.2
Q ss_pred ecCCCCCCCcccccchhhhHHHH-HHHHHHHcCCeeEEEeeeCchhhH
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNF-VANLSNYFANNVVCLNYLGDWGTQ 116 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~-Larll~~~G~~V~r~nyinD~G~Q 116 (233)
|+.--|||.||+|| .++=.. +.+ |..+||+| .+.|+||=..
T Consensus 60 y~G~~PTg~lHlG~---gvl~~~~~~~-lQ~~G~~~--~~lIaD~ha~ 101 (373)
T 3vgj_A 60 YDGFEPSGRMHIAQ---GLLKSIIVNK-LTSNGCTF--IFWIADWFAH 101 (373)
T ss_dssp EEEECCCSSCBHHH---HHHHHHHHHH-HHTTTCEE--EEEECHHHHH
T ss_pred EeCCCCCCCceehh---hHHHHHHHHH-HHHCCCcE--EEEEecceeE
Confidence 78889999999999 233332 344 44568764 4677887433
No 59
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=70.76 E-value=2.9 Score=37.32 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=27.2
Q ss_pred ecCCCCCCCcccccchhhhHHH--HHHHHHHHcCCeeEEEeeeCchhh
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGN--FVANLSNYFANNVVCLNYLGDWGT 115 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd--~Larll~~~G~~V~r~nyinD~G~ 115 (233)
|+.--|||.||+||. +|- .+.++-+ .||+ ....|+||=.
T Consensus 44 y~G~~PTg~lHlGhy----l~~l~~~~~lQ~-~G~~--~~~~i~D~~a 84 (348)
T 2j5b_A 44 YNGFEPSGRIHIAQA----LITVMNTNNMIE-CGGQ--MIIYIADWFA 84 (348)
T ss_dssp EEEECCCSSCBHHHH----HHHHHHHHHHHH-TTEE--EEEEECHHHH
T ss_pred EeccCCCCCCchhHH----HHHHHHHHHHHH-cCCc--EEEEeccchh
Confidence 999999999999993 333 3444443 5876 4577888743
No 60
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=70.18 E-value=2.4 Score=38.69 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=27.2
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHH-cCCeeEEEeeeCchh
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNY-FANNVVCLNYLGDWG 114 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~-~G~~V~r~nyinD~G 114 (233)
|+.--|||.||+||. +|-.+.|-|.. +|++|+ +-|+||=
T Consensus 77 ~sG~~PTG~lHLGh~----v~~~~~~~lQ~~~g~~~~--i~IaD~h 116 (392)
T 3jxe_A 77 YTGRGPSGPMHIGHI----IPFFATKWLQEKFGVNLY--IQITDDE 116 (392)
T ss_dssp EEEECCSSCCBHHHH----HHHHHHHHHHHHHCCEEE--EEECHHH
T ss_pred EeccCCCCchhHHHH----HHHHHHHHHHHhcCCceE--EEecchH
Confidence 677789999999998 45443343443 787655 5688873
No 61
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=67.23 E-value=1.6 Score=39.48 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=24.5
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCch
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDW 113 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~ 113 (233)
|+.--|||.||+||.=.++ ..+.++- ..||+| ...|+||
T Consensus 37 y~G~~PTg~lHlG~yl~~l--~~~~~lQ-~~G~~~--~~~iaD~ 75 (375)
T 2cyc_A 37 YIGFEISGYIHLGTGLMAG--AKIADFQ-KAGIKT--RVFLADW 75 (375)
T ss_dssp EEEECCCSCCBHHHHHHHH--HHHHHHH-HTTCBC--EEEECHH
T ss_pred EeCCCCCCCcCchHHHHHH--HHHHHHH-HCCCcE--EEEecCc
Confidence 6777899999999931122 1233333 358764 5667776
No 62
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=65.52 E-value=3.9 Score=40.02 Aligned_cols=41 Identities=10% Similarity=0.238 Sum_probs=27.4
Q ss_pred ecCCCCCCCcccccchhhhHHH-HHHHHHHHcCCeeEEEeeeCchhhH
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGN-FVANLSNYFANNVVCLNYLGDWGTQ 116 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd-~Larll~~~G~~V~r~nyinD~G~Q 116 (233)
|+.--|||.||+|| .++=. .+.+ |..+||+| .+.|+||=..
T Consensus 44 y~G~~PTg~lHLG~---~v~~~~~~~~-lQ~~G~~~--~~lIaD~ha~ 85 (690)
T 3p0j_A 44 YDGFEPSGRMHIAQ---GIFKAVNVNK-CTAAGCEF--VFWVADWFAL 85 (690)
T ss_dssp EEEECCCSCCBHHH---HHHHHHHHHH-HHHTTEEE--EEEECCGGGG
T ss_pred EeeecCCCcchhHh---hHHHHHHHHH-HHHCCCcE--EEEEeeeEEE
Confidence 78889999999999 33322 2334 44568765 5778888433
No 63
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=64.35 E-value=4.2 Score=37.52 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=28.7
Q ss_pred ecCCCCCCC-cccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHH
Q psy6240 70 FSSPNIAKP-FHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFG 118 (233)
Q Consensus 70 ~sSpNp~kp-LHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~ 118 (233)
|+.--|||| ||+||+- ++. .+.++- ..||++ .+.|+||=..++
T Consensus 36 y~G~dPTg~sLHLGhlv-~l~--~l~~lQ-~~G~~~--i~lIgD~ta~ig 79 (432)
T 2jan_A 36 YAGFDPTAPSLHAGHLV-PLL--TLRRFQ-RAGHRP--IVLAGGATGMIG 79 (432)
T ss_dssp EEEECCSSSSCBGGGHH-HHH--HHHHHH-HTTCEE--EEEECHHHHHHH
T ss_pred EEeeCCCCCCcCHHHHH-HHH--HHHHHH-HCCCcE--EEEEcCcEEEcc
Confidence 788899997 9999943 222 244443 458875 667888755554
No 64
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=60.12 E-value=2.6 Score=37.74 Aligned_cols=37 Identities=16% Similarity=0.426 Sum_probs=25.0
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHH--HHHcCCeeEEEeeeCchh
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANL--SNYFANNVVCLNYLGDWG 114 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larl--l~~~G~~V~r~nyinD~G 114 (233)
|+.--|||+||+||. +|-. .++ |.. +|+ ..+.|.||=
T Consensus 19 ~sG~~PTG~lHLGh~----vg~l-~~~~~lQ~-~~~--~~~~iaD~h 57 (346)
T 3n9i_A 19 FSGAQPSGELTIGNY----MGAL-RQWVQMQD-DYD--CIYCIVDLH 57 (346)
T ss_dssp EEEECSCSCCBHHHH----HHTH-HHHHTTTT-TSE--EEEEECHHH
T ss_pred EECcCCCCcccHHHH----HHHH-HHHHHHHh-hCc--EEEEEecce
Confidence 677889999999997 4422 333 222 555 467888884
No 65
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=59.98 E-value=6.5 Score=35.78 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=27.2
Q ss_pred ecCCCCCC-CcccccchhhhHHH-HHHHHHHHcCCeeEEEeeeCch
Q psy6240 70 FSSPNIAK-PFHVGHFRGTVLGN-FVANLSNYFANNVVCLNYLGDW 113 (233)
Q Consensus 70 ~sSpNp~k-pLHvGHlRnaiiGd-~Larll~~~G~~V~r~nyinD~ 113 (233)
|+.--||| .||+||+ +|- .+..+-++.|..|.-. |+|+
T Consensus 82 y~G~~PTg~~lHLGh~----v~~~~~~~lQ~~~~~~v~i~--I~D~ 121 (395)
T 3i05_A 82 YTGRGPSSESMHMGHL----IPFMFTKWLQDSFRVPLVIQ--MTDD 121 (395)
T ss_dssp EEEECCCSSCCBGGGS----HHHHHHHHHHHHHTCCEEEE--ECHH
T ss_pred EEeecCCCccchHHHH----HHHHHHHHHHHhcCCcEEEE--Ecch
Confidence 78889999 6999998 665 4444444447766654 8887
No 66
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=59.42 E-value=3.3 Score=37.75 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=25.7
Q ss_pred ecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchh
Q psy6240 70 FSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWG 114 (233)
Q Consensus 70 ~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G 114 (233)
||.--|||+||+||.=.++- -+..+ . .||+| .+.|.||=
T Consensus 39 ~sG~~PTG~lHLGhyvGal~--~~~~L-Q-~~~~~--~~~IaD~h 77 (388)
T 3prh_A 39 FSGIQPSGSVTLGNYIGAMK--QFVEL-Q-HDYNS--YFCIVDQH 77 (388)
T ss_dssp EEEECCCSCCBHHHHHHTHH--HHHHT-T-TTSEE--EEEECHHH
T ss_pred EEeeCCCCcchHHHHHHHHH--HHHHH-H-ccCcE--EEEEecce
Confidence 67889999999999733321 12222 2 27775 67888873
No 67
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=58.92 E-value=7.4 Score=35.41 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=28.0
Q ss_pred ecCCCCC-CCcccccchhhhHHHH-HHHHHHHcCCeeEEEeeeCchhh
Q psy6240 70 FSSPNIA-KPFHVGHFRGTVLGNF-VANLSNYFANNVVCLNYLGDWGT 115 (233)
Q Consensus 70 ~sSpNp~-kpLHvGHlRnaiiGd~-Larll~~~G~~V~r~nyinD~G~ 115 (233)
|+.--|| +.||+||+ +|-. +..+-++.|..|.- -|+|++.
T Consensus 78 y~G~~PTa~~lHlGh~----v~~~~~~~lQ~~~~~~v~i--~I~D~~~ 119 (393)
T 3hv0_A 78 YTGRGPSSESLHVGHL----VPFLFTKYLQDTFKVPLVI--QLTDDEK 119 (393)
T ss_dssp EEEECCSSSSCBSTTH----HHHHHHHHHHHHHCCCEEE--EECHHHH
T ss_pred EeCCCCCCCCccHHHH----HHHHHHHHHHHhcCCCeEe--eccChHH
Confidence 7788899 68999996 5555 55544444665443 7999975
No 68
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=54.14 E-value=7.5 Score=35.80 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=26.5
Q ss_pred ecCCCCC-CCcccccchhhhHHHH-HHHHHHHcCCeeEEEeeeCch
Q psy6240 70 FSSPNIA-KPFHVGHFRGTVLGNF-VANLSNYFANNVVCLNYLGDW 113 (233)
Q Consensus 70 ~sSpNp~-kpLHvGHlRnaiiGd~-Larll~~~G~~V~r~nyinD~ 113 (233)
|+.--|| |.||+||+ +|=. +.++-+.+|+.| ...|+||
T Consensus 106 y~G~dPTag~LHLGh~----v~~~~l~~lQ~~~g~~~--i~lI~D~ 145 (432)
T 2ip1_A 106 YTGRGPSSDSMHLGHM----IPFVFTKWLQEVFDVPL--VIELTDD 145 (432)
T ss_dssp EEEECCCSSCCBGGGH----HHHHHHHHHHHHHTCCE--EEEECHH
T ss_pred EEeecCCCCCccHHHH----HHHHHHHHHHHHcCCeE--EEEEecc
Confidence 7788899 89999998 4433 344333378764 5667885
No 69
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=50.88 E-value=10 Score=35.13 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=27.4
Q ss_pred ecCCCCC-CCcccccchhhhHHHH-HHHHHHHcCCeeEEEeeeCchh
Q psy6240 70 FSSPNIA-KPFHVGHFRGTVLGNF-VANLSNYFANNVVCLNYLGDWG 114 (233)
Q Consensus 70 ~sSpNp~-kpLHvGHlRnaiiGd~-Larll~~~G~~V~r~nyinD~G 114 (233)
|+.--|| +.||+||+ +|-. +.++-++.|..|.- -|+||.
T Consensus 95 ytG~dPTagsLHLGH~----v~~~~l~~lQ~~~g~~v~I--~IgD~~ 135 (451)
T 3foc_A 95 YTGRGPSSGALHLGHL----LPFIFTKYLQDAFKCYVVI--QITDDE 135 (451)
T ss_dssp EEEECCCSSCCBHHHH----HHHHHHHHHHHHHTCEEEE--EECHHH
T ss_pred EecCCCCCCCccHHHH----HHHHHHHHHHHccCceEEE--EeeCcH
Confidence 7888899 88999996 5555 44444443666654 599984
No 70
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=49.45 E-value=11 Score=34.73 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=29.5
Q ss_pred EecCCCCC-CCcccccchhhhHHHHHHHHHHH-cCCeeEEEeeeCchhhHHH
Q psy6240 69 EFSSPNIA-KPFHVGHFRGTVLGNFVANLSNY-FANNVVCLNYLGDWGTQFG 118 (233)
Q Consensus 69 E~sSpNp~-kpLHvGHlRnaiiGd~Larll~~-~G~~V~r~nyinD~G~Q~~ 118 (233)
=|+.--|| |.||+||+ +|=...|-|.. +|++| ..-|+||=..++
T Consensus 111 vy~G~dPTag~LHLGh~----v~~~~~~~lQ~~~G~~~--iilIgD~ta~ig 156 (437)
T 1r6u_A 111 LYTGRGPSSEAMHVGHL----IPFIFTKWLQDVFNVPL--VIQMTDDEKYLW 156 (437)
T ss_dssp EEEEECCCSSCCBHHHH----HHHHHHHHHHHHHTCCE--EEEECHHHHHHH
T ss_pred EEEcccCCCCCccHHHH----HHHHHHHHHHHHhCCcE--EEEEecceeeec
Confidence 38888999 89999998 45333344444 78875 456777654343
No 71
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=49.11 E-value=14 Score=34.32 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=29.3
Q ss_pred ecCCCCC-CCcccccchhhhHHHHHHHHHHH-cCCeeEEEeeeCchhhHHH
Q psy6240 70 FSSPNIA-KPFHVGHFRGTVLGNFVANLSNY-FANNVVCLNYLGDWGTQFG 118 (233)
Q Consensus 70 ~sSpNp~-kpLHvGHlRnaiiGd~Larll~~-~G~~V~r~nyinD~G~Q~~ 118 (233)
|+.--|| |.||+||+ +|=.+.+-|.. +|+.| ..-|+||=..++
T Consensus 159 y~G~dPTag~LHLGh~----v~~~~~~~lQ~~~g~~~--iilI~D~~a~ig 203 (477)
T 1r6t_A 159 YTGRGPSSEAMHVGHL----IPFIFTKWLQDVFNVPL--VIQMTDDEKYLW 203 (477)
T ss_dssp EEEECCCTTCCBGGGH----HHHHHHHHHHHHHTCCE--EEEECHHHHHHH
T ss_pred EEcccCCCCCccHHHH----HHHHHHHHHHHHhCCcE--EEEEecceeeec
Confidence 8888999 89999998 55443444554 78775 455677654343
No 72
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=46.30 E-value=14 Score=33.75 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=27.4
Q ss_pred ecCCCCCC-CcccccchhhhHHHHHHHHHHHc-CCeeEEEeeeCchh
Q psy6240 70 FSSPNIAK-PFHVGHFRGTVLGNFVANLSNYF-ANNVVCLNYLGDWG 114 (233)
Q Consensus 70 ~sSpNp~k-pLHvGHlRnaiiGd~Larll~~~-G~~V~r~nyinD~G 114 (233)
|+.--||| .||+||+ +|-.+.+-|..+ |..|.- -|+|+-
T Consensus 105 y~G~~PTg~~lHLGh~----v~~~~~~~lQ~~~g~~~~i--~IaD~~ 145 (406)
T 3tze_A 105 YTGRGPSSKTMHIGHT----IPFLLCKYMQDAFKIRLVI--QITDDE 145 (406)
T ss_dssp EEEECCCSSCCBGGGH----HHHHHHHHHHHHHTCCEEE--EECHHH
T ss_pred EEeeCCCCCcccHHHH----HHHHHHHHHHHhcCCcEEE--EeeChH
Confidence 78889998 7999996 665334434444 876654 478873
No 73
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=40.01 E-value=30 Score=26.22 Aligned_cols=65 Identities=8% Similarity=0.075 Sum_probs=45.5
Q ss_pred CCeEEEEeChhhHHHHHHhccCCCcccccccCCCceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEE
Q psy6240 30 DDNVILPVDKTEFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCL 107 (233)
Q Consensus 30 ggfINf~l~~~~~~~~vl~~~~~~~~~g~~~~~~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~ 107 (233)
|.=|.+.++...+- .++..+.. ..|..+++ +|...|..-+ ++++.-+-++|--||+..|+.+.+.
T Consensus 31 G~~isLnf~da~i~-~vl~~la~--------~tg~NiV~---d~~V~G~VTl-~l~~v~~~~al~~iL~~~gl~~~~~ 95 (128)
T 4ar0_A 31 GRKISLDFQDVEIR-TILQILAK--------ESGMNIVA---SDSVNGKMTL-SLKDVPWDQALDLVMQARNLDMRQQ 95 (128)
T ss_dssp SCEEEEEEEEEEHH-HHHHHHHH--------TTCCEEEE---CTTCCCEEEE-EEEEEEHHHHHHHHHHHHTEEEEEE
T ss_pred CCceEEEEeCCCHH-HHHHHHHH--------HHCCcEEE---cCCCCceeeE-eecCCCHHHHHHHHHHHcCceEEEE
Confidence 33466666655444 55554421 13556666 4777888877 7999999999999999999987764
No 74
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=39.83 E-value=26 Score=29.21 Aligned_cols=46 Identities=17% Similarity=0.113 Sum_probs=32.8
Q ss_pred Ccccccch---hhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHHHHH
Q psy6240 78 PFHVGHFR---GTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIG 123 (233)
Q Consensus 78 pLHvGHlR---naiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l~~~ 123 (233)
++.||... +.+++..++.+|+..||+|....-+++....+.-|..|
T Consensus 7 ~i~ig~~~~~~~~~~~~~~~~~le~~G~~Ve~~~~~g~~~~~~~al~~G 55 (275)
T 1sw5_A 7 RVVIGSKPFNEQYILANMIAILLEENGYKAEVKEGLGGTLVNYEALKRN 55 (275)
T ss_dssp CEEECCCSSHHHHHHHHHHHHHHHHTTCCEEECTTCCSHHHHHHHHHHT
T ss_pred CEEEEcCCCcHHHHHHHHHHHHHHHcCCcEEEEeCCCchHHHHHHHHcC
Confidence 45666654 45789999999999999999886456665555544433
No 75
>2dew_X Protein-arginine deiminase type IV; histone modification enzyme, hydrolase; 2.10A {Homo sapiens} SCOP: b.2.9.1 b.6.1.6 d.126.1.5 PDB: 2dex_X 2dey_X 3b1u_A* 3b1t_A* 2dw5_A* 3apn_A 3apm_A 1wda_A* 1wd9_A* 1wd8_A 4dkt_A*
Probab=36.62 E-value=25 Score=34.18 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=34.7
Q ss_pred EecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhh
Q psy6240 69 EFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGT 115 (233)
Q Consensus 69 E~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~ 115 (233)
++..|||-||+-=|+ -|+-+.+..+|+.+|++| .||+||=.
T Consensus 603 ~l~iPkP~GPvI~G~---d~lee~v~~l~~p~Gl~v---tFIDD~~s 643 (671)
T 2dew_X 603 HLGIPKPFGPVINGR---CCLEEKVCSLLEPLGLQC---TFINDFFT 643 (671)
T ss_dssp EEEEECCCCCEETTE---EHHHHHHHHHHGGGTCEE---EEECCTTT
T ss_pred ceecCCCcCCccCCe---eHHHHHHHHHHhhcCCEE---EEEcChHH
Confidence 567899999996664 499999999999999977 58999943
No 76
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=36.00 E-value=36 Score=29.07 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=33.0
Q ss_pred CCcccccc---hhhhHHHHHHHHHHHc-CCeeEEEeeeCchhhHHH
Q psy6240 77 KPFHVGHF---RGTVLGNFVANLSNYF-ANNVVCLNYLGDWGTQFG 118 (233)
Q Consensus 77 kpLHvGHl---RnaiiGd~Larll~~~-G~~V~r~nyinD~G~Q~~ 118 (233)
+++.||.. =+.++++.++.+|+.. ||+|.+..=+|+....+.
T Consensus 12 ~~I~ig~~~~te~~il~~i~~~~Le~~~G~~V~~~~~lg~~~~~~~ 57 (284)
T 3r6u_A 12 QTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLGSNAVQQQ 57 (284)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHSSCCEEEEEEECSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCeEEEecCCchHHHHH
Confidence 56666665 4679999999999998 999999987777554443
No 77
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=35.12 E-value=30 Score=29.61 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=26.8
Q ss_pred CCcccccch---hhhHHHHHHHHHHHcCCeeEEEeeeCchhhHH
Q psy6240 77 KPFHVGHFR---GTVLGNFVANLSNYFANNVVCLNYLGDWGTQF 117 (233)
Q Consensus 77 kpLHvGHlR---naiiGd~Larll~~~G~~V~r~nyinD~G~Q~ 117 (233)
+++.||... +.+++..++.+|+..||+|.....+ +....+
T Consensus 8 ~~I~ig~~~~~e~~~~~~i~~~~Le~~Gy~Ve~~~~~-~~~~~~ 50 (309)
T 1r9l_A 8 ITVNPVQSTITEETFQTLLVSRALEKLGYTVNKPSEV-DYNVGY 50 (309)
T ss_dssp CEECEEECSCGGGHHHHHHHHHHHHHTTCEECCCEEC-CHHHHH
T ss_pred ceEEEeecCccHHHHHHHHHHHHHHHcCCCeEEeecC-chHHHH
Confidence 344455433 3578889999999999999876544 443333
No 78
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=32.77 E-value=27 Score=24.68 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=18.7
Q ss_pred EecCCCCCCCcccccchhhhHHHHHHHHHHHcCCe
Q psy6240 69 EFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANN 103 (233)
Q Consensus 69 E~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~ 103 (233)
-|+||+|..+-||----...||+.|..+.+..|..
T Consensus 9 ~~~~~~~~~~~~M~~~~~~~ig~~lr~~R~~~glt 43 (99)
T 3g5g_A 9 HHSSGLVPRGSHMESFLLSKVSFVIKKIRLEKGMT 43 (99)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHTTCC
T ss_pred cccCCCCCccccccHHHHHHHHHHHHHHHHHcCCC
Confidence 37899999999997666778999999999999874
No 79
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=32.63 E-value=40 Score=26.36 Aligned_cols=33 Identities=9% Similarity=0.025 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCeeEEEeeeCchhhHHHHHH
Q psy6240 89 LGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQ 121 (233)
Q Consensus 89 iGd~Larll~~~G~~V~r~nyinD~G~Q~~~l~ 121 (233)
-|..|+.+|+..|++|...-.|.|==.++...+
T Consensus 41 ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al 73 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYSLVPDDKIKILKAF 73 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHH
Confidence 477899999999999999999999766665433
No 80
>3r3p_A MobIle intron protein; homing endonuclease, hydrolase; 2.20A {Bacillus phage 0305phi8-36}
Probab=29.96 E-value=65 Score=23.38 Aligned_cols=40 Identities=8% Similarity=0.023 Sum_probs=27.2
Q ss_pred ceEEEEecCCCCCCCc-ccccchhhhHHHHHHHHHHHcCCeeEEEee
Q psy6240 64 DKVVVEFSSPNIAKPF-HVGHFRGTVLGNFVANLSNYFANNVVCLNY 109 (233)
Q Consensus 64 ~~v~VE~sSpNp~kpL-HvGHlRnaiiGd~Larll~~~G~~V~r~ny 109 (233)
.+++||+ .|.. | +|-++..-=..--+.|+..||.|.|...
T Consensus 40 ~rl~Iev-----DG~~wH-~~~~~~~rD~~r~~~L~~~Gw~Vlr~~~ 80 (105)
T 3r3p_A 40 KKLAIEV-----NGVYWA-SKQKNVNKDKRKLSELHSKGYRVLTIED 80 (105)
T ss_dssp TTEEEEE-----ECSCCT-TCCCCHHHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCEEEEe-----cCcccC-CCchHHHHHHHHHHHHHHCCCEEEEEeH
Confidence 4566665 3555 6 4556655545557889999999999753
No 81
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=29.94 E-value=71 Score=27.19 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=33.8
Q ss_pred CCCCCCCcccccc---hhhhHHHHHHHHHHHc-C--CeeEEEeeeCchhhHHH
Q psy6240 72 SPNIAKPFHVGHF---RGTVLGNFVANLSNYF-A--NNVVCLNYLGDWGTQFG 118 (233)
Q Consensus 72 SpNp~kpLHvGHl---RnaiiGd~Larll~~~-G--~~V~r~nyinD~G~Q~~ 118 (233)
|....+++.||.. =+.++++.++.+|+.. | |+|.+..-+|+....+.
T Consensus 4 ~~~~~~~I~ig~~~~te~~il~~i~~~~Le~~~G~~~~V~~~~~lg~~~~~~~ 56 (282)
T 3o66_A 4 SKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQHN 56 (282)
T ss_dssp ---CCCCCEEEEESSHHHHHHHHHHHHHHHHHTTTSCCCEEEEEESSHHHHHH
T ss_pred CcCCCCCEEEEcCCCcHHHHHHHHHHHHHHhccCCceeEEEEecCCCcHHHHH
Confidence 3344456666665 4679999999999998 9 99999987877544443
No 82
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=29.08 E-value=38 Score=32.99 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=25.1
Q ss_pred CCCCcccccchhhhHHH--HHHHHHHHcCCeeEEEeeeCchhhHHH
Q psy6240 75 IAKPFHVGHFRGTVLGN--FVANLSNYFANNVVCLNYLGDWGTQFG 118 (233)
Q Consensus 75 p~kpLHvGHlRnaiiGd--~Larll~~~G~~V~r~nyinD~G~Q~~ 118 (233)
++|.||+||+ +|= +|...++.. ..+.....|+||=.+++
T Consensus 390 s~g~lHLGh~----v~~~k~l~~~~~~~-~g~~v~ilIaD~~A~i~ 430 (690)
T 3p0j_A 390 ALLKVPLDVA----EGMIKVTKDFIAAH-PEGTVTLVLPDWSAVAS 430 (690)
T ss_dssp CCSSCBHHHH----HHHHHHHHHHHHHC-SSCEEEEEECTTHHHHT
T ss_pred CCCCcccchH----HHHHHHHHHHHHHc-CCCeEEEEEecchhhhC
Confidence 6999999997 443 345544443 24456677899855543
No 83
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=25.61 E-value=45 Score=24.27 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCeeEEEe
Q psy6240 89 LGNFVANLSNYFANNVVCLN 108 (233)
Q Consensus 89 iGd~Larll~~~G~~V~r~n 108 (233)
+|..+++.|...|++|.-.-
T Consensus 17 iG~~la~~L~~~g~~V~~id 36 (141)
T 3llv_A 17 AGVGLVRELTAAGKKVLAVD 36 (141)
T ss_dssp HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEE
Confidence 89999999999999998654
No 84
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=24.68 E-value=80 Score=26.53 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHH
Q psy6240 86 GTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLL 120 (233)
Q Consensus 86 naiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l 120 (233)
+.+++..++.+|+..||+|.... + +.+.++.-|
T Consensus 177 ~~~~~~v~~~~Le~~Gy~Ve~~~-~-~~~~~~~al 209 (268)
T 2b4l_A 177 EIASTNVIGKVLEDLGYEVTLTQ-V-EAGPMWTAI 209 (268)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEE-C-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCceEEEE-C-ChHHHHHHH
Confidence 46788888999999999999987 5 445555433
No 85
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=24.42 E-value=54 Score=25.95 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=23.4
Q ss_pred ceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEE
Q psy6240 64 DKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCL 107 (233)
Q Consensus 64 ~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~ 107 (233)
+-++|||.+-|. .+++|.|+.+|++|+..
T Consensus 4 ~I~iiD~g~~n~---------------~si~~al~~~G~~~~v~ 32 (211)
T 4gud_A 4 NVVIIDTGCANI---------------SSVKFAIERLGYAVTIS 32 (211)
T ss_dssp CEEEECCCCTTH---------------HHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCChH---------------HHHHHHHHHCCCEEEEE
Confidence 467889987763 67889999999999863
No 86
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=22.67 E-value=85 Score=26.54 Aligned_cols=23 Identities=4% Similarity=-0.162 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHcCCeeEEEe
Q psy6240 86 GTVLGNFVANLSNYFANNVVCLN 108 (233)
Q Consensus 86 naiiGd~Larll~~~G~~V~r~n 108 (233)
+.+++..++.+|+..||+|....
T Consensus 19 ~~~~~~i~~~~Le~~G~~Ve~~~ 41 (298)
T 2rin_A 19 ITATTATATTILEALGYETDVKV 41 (298)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCceEEEE
Confidence 45788888999999999999876
No 87
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=22.43 E-value=1.4e+02 Score=24.31 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=32.9
Q ss_pred CceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEe
Q psy6240 63 TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLN 108 (233)
Q Consensus 63 ~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~n 108 (233)
+.||+|=+.||++ +..|..+-+.++.-++..|++|...+
T Consensus 1 ~mkiLiI~gspr~-------~S~t~~l~~~~~~~l~~~g~ev~~~d 39 (228)
T 3tem_A 1 GKKVLIVYAHQEP-------KSFNGSLKNVAVDELSRQGCTVTVSD 39 (228)
T ss_dssp CCEEEEEECCSCT-------TSHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCEEEEEEeCCCC-------CCHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3578888889884 46789999999999999999998775
No 88
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=22.35 E-value=1.2e+02 Score=25.90 Aligned_cols=54 Identities=15% Similarity=0.073 Sum_probs=37.1
Q ss_pred eEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHH
Q psy6240 65 KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGL 119 (233)
Q Consensus 65 ~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~ 119 (233)
..+|-+++|..++.-.+=+.|.. .+.+++.+++..|++=+..-|=+|+|.....
T Consensus 92 iP~is~~~~~~~~~~~~~~~~p~-~~~a~~~~~~~~g~~~v~ii~d~~~g~~~~~ 145 (384)
T 3saj_A 92 VCFITPSFPVDTSNQFVLQLRPE-LQEALISIIDHYKWQTFVYIYDADRGLSVLQ 145 (384)
T ss_dssp CCEEECSCCCSSCCTTEEECSCC-CHHHHHHHHHHTTCCEEEEEECSTTCSHHHH
T ss_pred CCeEeccccCcCccCceEEeccc-HHHHHHHHHHHCCCcEEEEEEeCchhHHHHH
Confidence 45666766544433233455666 8999999999999975555557889987654
No 89
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.18 E-value=61 Score=23.49 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=35.1
Q ss_pred EecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCc
Q psy6240 69 EFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGD 112 (233)
Q Consensus 69 E~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD 112 (233)
.+.||.|..-|+||++=..+==+.|..++...| +|....-+-|
T Consensus 9 ~~~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG-~V~~v~i~~~ 51 (105)
T 1sjq_A 9 HHGSGVPSRVIHIRKLPIDVTEGEVISLGLPFG-KVTNLLMLKG 51 (105)
T ss_dssp ---CCCCCCEEEECSCCTTSCHHHHHHHHHHHC-CEEEEEEETT
T ss_pred ccCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEcC
Confidence 467999999999999999999999999999999 4666666665
No 90
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=21.40 E-value=83 Score=26.03 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHHHcCCeeEEEe
Q psy6240 85 RGTVLGNFVANLSNYFANNVVCLN 108 (233)
Q Consensus 85 RnaiiGd~Larll~~~G~~V~r~n 108 (233)
=+.+++..++.+|+..||+|....
T Consensus 13 e~~i~~~i~~~~Le~~G~~Ve~~~ 36 (256)
T 3l6g_A 13 SEVASINVLTQAMKEHGFDVKTTA 36 (256)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCceEEEE
Confidence 367999999999999999999975
No 91
>2ekd_A Hypothetical protein PH0250; NPPSFA, national project on protein structural and functiona analyses; 2.30A {Pyrococcus horikoshii}
Probab=20.85 E-value=44 Score=27.61 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=31.0
Q ss_pred CCCceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHHHHHHHhhcc
Q psy6240 61 NCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNI 129 (233)
Q Consensus 61 ~~~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~ 129 (233)
..|++|+|||+|.-|.. . .+..+.+..|+.|.- .|.--+.-++-.-++..|.
T Consensus 13 k~GEtVLVEY~S~~~~e---~----------~~~~ii~~~~~pilI----~DilDtl~i~~~~Lkl~G~ 64 (207)
T 2ekd_A 13 RVGETVLVEYSGTSRAE---L----------LLYYIVNNSKLPIVV----DDILDTYYEFYTRLKVAGF 64 (207)
T ss_dssp CTTCEEEEEECTTSCTH---H----------HHHHHHHHCSSCBEE----EEETTHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEeCCCCcHH---H----------HHHHHHHhCCCcEEE----EeccccHHHHHHHHHhcCC
Confidence 35899999999877432 2 233334477887764 5555555444444444553
No 92
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=20.65 E-value=89 Score=24.77 Aligned_cols=41 Identities=20% Similarity=0.071 Sum_probs=31.9
Q ss_pred ccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHHHHH
Q psy6240 82 GHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIG 123 (233)
Q Consensus 82 GHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l~~~ 123 (233)
|..+++ -|..|+.+|+..|++|.+.-.+.|=-.++...+..
T Consensus 18 G~i~Dt-N~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~ 58 (172)
T 3kbq_A 18 GRTVNT-NAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRV 58 (172)
T ss_dssp TSSCCH-HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHH
T ss_pred CcEEeH-HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHH
Confidence 454444 67899999999999999999999977666554433
No 93
>1i7w_B E-cadherin, epithelial-cadherin; cell adhesion, beta-catenin, protein-protein complex, extended interface, armadillo repeat, phosphoserin; HET: SEP; 2.00A {Mus musculus} SCOP: j.71.1.1 PDB: 1i7x_B 3ifq_C*
Probab=20.04 E-value=27 Score=27.56 Aligned_cols=19 Identities=32% Similarity=0.649 Sum_probs=14.6
Q ss_pred EEeeeCchhhHHHHHHHHH
Q psy6240 106 CLNYLGDWGTQFGLLQIGL 124 (233)
Q Consensus 106 r~nyinD~G~Q~~~l~~~~ 124 (233)
.-.|++|||.+|.+|+.-|
T Consensus 127 d~d~L~~wGPrF~~LA~~y 145 (151)
T 1i7w_B 127 DYDYLNEWGNRFKKLADMY 145 (151)
T ss_dssp --CCTTTSCGGGHHHHHHC
T ss_pred CchhhcccchhHHHHHHHh
Confidence 4568999999999997554
Done!