RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6240
         (233 letters)



>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 348

 Score = 97.3 bits (241), Expect = 2e-24
 Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 21/166 (12%)

Query: 65  KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGL 124
           KV++EFSSPNIAKPFH GH R T++G F+ANL       V+ +NYLGDWG QFGLL +G 
Sbjct: 9   KVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGF 68

Query: 125 KELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPD 184
           +    +   ++  P+  L+  YV+ N                   K   +  D   +   
Sbjct: 69  ERYGNEEALVKD-PIHHLFDVYVRIN-------------------KDIEEEGDSIPLEQS 108

Query: 185 VQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHF 230
              +A   F+++E G      K W  F++ ++ +   TY RL I +
Sbjct: 109 TNGKAREYFKRMEDGDEEAL-KIWKRFREFSIEKYIDTYARLNIKY 153


>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 370

 Score = 93.5 bits (231), Expect = 5e-23
 Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 3/161 (1%)

Query: 65  KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGL 124
            V+VE +S N  K  HVGH R   LG+ +A +  Y    V+ LNY+ D G Q       L
Sbjct: 8   VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFAL 67

Query: 125 KE--LNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKIN 182
           +   L     +         Y    +  E  ++ P ++E        +   + N +    
Sbjct: 68  RHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQ 127

Query: 183 PDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTY 223
                   N    L   ++ +     L      L +    +
Sbjct: 128 MATMHA-LNARYDLLVWESDIVRAGLLQKALALLEQSPHVF 167


>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 317

 Score = 38.2 bits (87), Expect = 5e-04
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 64  DKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQF 117
           +K VVE      +   HVG+FR       V +        V  ++   D+    
Sbjct: 18  EKYVVESG-ITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFR 70


>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
           {Escherichia coli [TaxId: 562]}
          Length = 315

 Score = 31.5 bits (70), Expect = 0.081
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 80  HVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQF 117
           H+GH R  V  + VA    +    +  +  + D   + 
Sbjct: 37  HIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKI 74


>d1pv0a_ a.2.12.1 (A:) Sporulation inhibitor Sda {Bacillus subtilis
           [TaxId: 1423]}
          Length = 46

 Score = 24.4 bits (53), Expect = 2.8
 Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 140 DVLYKAYVKANELAKINPD 158
           ++L ++Y KA E+  +N D
Sbjct: 7   ELLIESYFKATEM-NLNRD 24


>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 348

 Score = 25.8 bits (55), Expect = 5.4
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 73  PNIAKPFHVGHFRGTVLGNFVANLSNYFANNV 104
             +    H+GH   TV+ +F+A          
Sbjct: 12  YYVNAEPHLGHAYTTVVADFLARWHRLDGYRT 43


>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase
          (ValRS) {Thermus thermophilus [TaxId: 274]}
          Length = 425

 Score = 25.7 bits (55), Expect = 5.4
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 64 DKVVVEFSSPNIAKPFHVGHFRGTVLGNFVA 94
             V+    PN+    H+GH     L + + 
Sbjct: 34 PPFVIFMPPPNVTGSLHMGHALDNSLQDALI 64


>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
           (MetRS) {Escherichia coli [TaxId: 562]}
          Length = 350

 Score = 24.9 bits (53), Expect = 9.5
 Identities = 5/32 (15%), Positives = 9/32 (28%)

Query: 73  PNIAKPFHVGHFRGTVLGNFVANLSNYFANNV 104
           P      H+GH    +  +          + V
Sbjct: 11  PYANGSIHLGHMLEHIQADVWVRYQRMRGHEV 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0413    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 870,842
Number of extensions: 38359
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 10
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)