BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6241
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VET|B Chain B, Crystal Structure Of P14MP1 AT 1.9 A RESOLUTION
Length = 125
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 84/107 (78%)
Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
+ G+ S L++ EG+LLAYSG+ D D V AAI SNIW+A+++NG AF EDSL+ +LM+
Sbjct: 16 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMD 75
Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
C G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL YLE PL QV
Sbjct: 76 CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 122
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 62/76 (81%)
Query: 5 MLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNG 64
ML+PK L+QVL QANT GVQST+L++ EG+LLAYSG+ D D V AAI SNIW+A+++NG
Sbjct: 1 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG 60
Query: 65 RSAFKEDSLQMVLMEC 80
AF EDSL+ +LM+C
Sbjct: 61 NQAFNEDSLKFILMDC 76
>pdb|2ZL1|B Chain B, Mp1-P14 Scaffolding Complex
Length = 131
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 84/107 (78%)
Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
+ G+ S L++ EG+LLAYSG+ D D V AAI SNIW+A+++NG AF EDSL+ +LM+
Sbjct: 22 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMD 81
Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
C G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL YLE PL QV
Sbjct: 82 CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 128
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 61/75 (81%)
Query: 6 LKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGR 65
L+PK L+QVL QANT GVQST+L++ EG+LLAYSG+ D D V AAI SNIW+A+++NG
Sbjct: 8 LRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGN 67
Query: 66 SAFKEDSLQMVLMEC 80
AF EDSL+ +LM+C
Sbjct: 68 QAFNEDSLKFILMDC 82
>pdb|1SZV|A Chain A, Structure Of The Adaptor Protein P14 Reveals A Profilin-
Like Fold With Novel Function
Length = 130
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 84/107 (78%)
Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
+ G+ S L++ EG+LLAYSG+ D D V AAI SNIW+A+++NG AF EDSL+ +LM+
Sbjct: 21 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMD 80
Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
C G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL YLE PL QV
Sbjct: 81 CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 127
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 63/79 (79%)
Query: 2 LKPMLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFE 61
L ML+PK L+QVL QANT GVQST+L++ EG+LLAYSG+ D D V AAI SNIW+A++
Sbjct: 3 LGSMLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYD 62
Query: 62 KNGRSAFKEDSLQMVLMEC 80
+NG AF EDSL+ +LM+C
Sbjct: 63 RNGNQAFNEDSLKFILMDC 81
>pdb|1SKO|B Chain B, Mp1-P14 Complex
Length = 130
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 84/107 (78%)
Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
+ G+ S L++ EG+LLAYSG+ D D V AAI SNIW+A+++NG AF EDSL+ +LM+
Sbjct: 22 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMD 81
Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
C G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL YLE PL QV
Sbjct: 82 CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 128
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 61/75 (81%)
Query: 6 LKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGR 65
L+PK L+QVL QANT GVQST+L++ EG+LLAYSG+ D D V AAI SNIW+A+++NG
Sbjct: 8 LRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGN 67
Query: 66 SAFKEDSLQMVLMEC 80
AF EDSL+ +LM+C
Sbjct: 68 QAFNEDSLKFILMDC 82
>pdb|3CPT|B Chain B, Mp1-P14 Scaffolding Complex
Length = 131
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 83/107 (77%)
Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
+ G+ S L++ EG+LLAYSG+ D D V AAI SNIW+A ++NG AF EDSL+ +LM+
Sbjct: 22 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAADRNGNQAFNEDSLKFILMD 81
Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
C G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL YLE PL QV
Sbjct: 82 CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 128
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 60/75 (80%)
Query: 6 LKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGR 65
L+PK L+QVL QANT GVQST+L++ EG+LLAYSG+ D D V AAI SNIW+A ++NG
Sbjct: 8 LRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAADRNGN 67
Query: 66 SAFKEDSLQMVLMEC 80
AF EDSL+ +LM+C
Sbjct: 68 QAFNEDSLKFILMDC 82
>pdb|1VEU|B Chain B, Crystal Structure Of The P14MP1 COMPLEX AT 2.15 A
Resolution
Length = 126
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 81/107 (75%)
Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
+ G+ S L++ EG+LLAYSG+ D D V AAI SNIW+A+++NG AF EDSL+ +L +
Sbjct: 17 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILXD 76
Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
C G+VAIT+VAN+LLC YAKE V FG L+AKA+AL YLE PL QV
Sbjct: 77 CXEGRVAITRVANLLLCXYAKETVGFGXLKAKAQALVQYLEEPLTQV 123
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 60/75 (80%)
Query: 6 LKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGR 65
L+PK L+QVL QANT GVQST+L++ EG+LLAYSG+ D D V AAI SNIW+A+++NG
Sbjct: 3 LRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGN 62
Query: 66 SAFKEDSLQMVLMEC 80
AF EDSL+ +L +C
Sbjct: 63 QAFNEDSLKFILXDC 77
>pdb|2IU4|A Chain A, Dihydroxyacetone Kinase Operon Co-Activator Dha-Dhaq
pdb|2IU4|B Chain B, Dihydroxyacetone Kinase Operon Co-Activator Dha-Dhaq
Length = 336
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 9 KVLSQVLGQANTEGVQSTMLMSYEG-TLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSA 67
K ++ + +A TEG+ ++S++ ++ AY+ HK + G + I AF K G S
Sbjct: 109 KEFNEAIKEARTEGIDVRYIVSHDDISVNAYNFHKRHRGVAGTILLHKILGAFAKEGGSI 168
Query: 68 FKEDSLQMVL 77
+ + L + L
Sbjct: 169 DEIEQLALSL 178
>pdb|2IU6|A Chain A, Regulation Of The Dha Operon Of Lactococcus Lactis
pdb|2IU6|B Chain B, Regulation Of The Dha Operon Of Lactococcus Lactis
Length = 336
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 9 KVLSQVLGQANTEGVQSTMLMSYEG-TLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSA 67
K ++ + +A TEG+ ++S++ ++ AY+ HK + G + I AF K G S
Sbjct: 109 KEFNEAIKEARTEGIDVRYIVSHDDISVNAYNFHKRHRGVAGTILLHKILGAFAKEGGSI 168
Query: 68 FKEDSLQMVL 77
+ + L + L
Sbjct: 169 DEIEQLALSL 178
>pdb|3KH2|A Chain A, Crystal Structure Of The P1 Bacteriophage Doc Toxin (F68s)
In Complex With The Phd Antitoxin (L17mV39A). NORTHEAST
STRUCTURAL GENOMICS Targets Er385-Er386
pdb|3KH2|B Chain B, Crystal Structure Of The P1 Bacteriophage Doc Toxin (F68s)
In Complex With The Phd Antitoxin (L17mV39A). NORTHEAST
STRUCTURAL GENOMICS Targets Er385-Er386
pdb|3KH2|C Chain C, Crystal Structure Of The P1 Bacteriophage Doc Toxin (F68s)
In Complex With The Phd Antitoxin (L17mV39A). NORTHEAST
STRUCTURAL GENOMICS Targets Er385-Er386
pdb|3KH2|D Chain D, Crystal Structure Of The P1 Bacteriophage Doc Toxin (F68s)
In Complex With The Phd Antitoxin (L17mV39A). NORTHEAST
STRUCTURAL GENOMICS Targets Er385-Er386
Length = 134
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 121 GHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLY 179
GH ND A+ S + +NG F L + + + G+++++ VA+ L LY
Sbjct: 65 GHISNDANKRTALNSALLF-LRRNGVQVFDSPELADLTVGAATGEISVSSVADTLRRLY 122
>pdb|3K33|A Chain A, Crystal Structure Of The Phd-Doc Complex
Length = 126
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 121 GHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLY 179
GH ND A+ S + +NG F L + + + G+++++ VA+ L LY
Sbjct: 65 GHIFNDANKRTALNSALLF-LRRNGVQVFDSPELADLTVGAATGEISVSSVADTLRRLY 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,637,012
Number of Sequences: 62578
Number of extensions: 211319
Number of successful extensions: 561
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 22
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)