Query psy6241
Match_columns 211
No_of_seqs 96 out of 98
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 21:22:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4107|consensus 100.0 8.5E-42 1.8E-46 268.2 9.4 125 5-210 1-125 (125)
2 KOG4107|consensus 99.9 4.9E-28 1.1E-32 190.5 2.1 73 1-81 1-77 (125)
3 COG2018 Uncharacterized distan 99.6 1.1E-14 2.3E-19 116.7 8.7 102 101-203 16-118 (119)
4 PF03259 Robl_LC7: Roadblock/L 99.2 3.3E-11 7.1E-16 87.6 5.0 79 101-180 12-91 (91)
5 PF08923 MAPKK1_Int: Mitogen-a 97.6 0.00037 8.1E-09 55.8 8.1 100 100-201 13-113 (119)
6 PF03259 Robl_LC7: Roadblock/L 97.3 0.00012 2.6E-09 53.0 1.5 64 17-81 9-72 (91)
7 PF00235 Profilin: Profilin; 91.2 0.53 1.1E-05 36.3 5.3 93 104-200 16-121 (121)
8 COG2018 Uncharacterized distan 88.3 0.74 1.6E-05 37.4 4.1 60 21-81 17-76 (119)
9 PF01217 Clat_adaptor_s: Clath 88.2 5.1 0.00011 31.8 8.9 97 104-207 2-98 (141)
10 cd00148 PROF Profilin binds ac 81.5 9.2 0.0002 30.4 7.5 96 103-202 15-124 (127)
11 KOG1755|consensus 76.1 11 0.00024 31.0 6.5 97 103-202 16-125 (128)
12 smart00392 PROF Profilin. Bind 69.5 34 0.00074 27.1 7.8 98 102-202 15-126 (129)
13 PF09941 DUF2173: Uncharacteri 57.6 24 0.00052 28.2 4.8 43 101-146 9-51 (108)
14 KOG4115|consensus 55.4 81 0.0018 24.9 7.3 79 101-180 15-93 (97)
15 COG4831 Roadblock/LC7 domain [ 54.4 24 0.00051 28.2 4.2 39 102-143 12-50 (109)
16 PF03164 Mon1: Trafficking pro 36.0 1.8E+02 0.0039 27.7 7.9 87 106-200 13-99 (415)
17 COG4831 Roadblock/LC7 domain [ 32.0 1E+02 0.0023 24.6 4.6 73 28-120 19-95 (109)
18 PHA02616 VP2/VP3; Provisional 31.4 5.6 0.00012 35.5 -2.8 75 46-120 39-116 (259)
19 TIGR02578 cas_TM1811_Csm1 CRIS 23.3 38 0.00082 34.3 1.0 19 45-63 204-222 (648)
20 cd02955 SSP411 TRX domain, SSP 20.2 1.6E+02 0.0035 23.3 3.9 22 101-122 78-99 (124)
No 1
>KOG4107|consensus
Probab=100.00 E-value=8.5e-42 Score=268.23 Aligned_cols=125 Identities=59% Similarity=0.937 Sum_probs=102.9
Q ss_pred CcchhhHHHHhhhhccCCcceeeEeeecCceeeecCCCCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhhhhh
Q psy6241 5 MLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSVSF 84 (211)
Q Consensus 5 ~l~~~vL~q~~g~~~t~~~~~~~Ll~~~G~lla~~~~~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~~~~ 84 (211)
|+|||+|.|+++|.||+|+.+++|++.+|.||||+++.|.|+||+|||
T Consensus 1 MLkpKALtqVLsQaNTgGV~~tlLln~EG~LLAYsGygdkdarvtaAi-------------------------------- 48 (125)
T KOG4107|consen 1 MLKPKALTQVLSQANTGGVDGTLLLNKEGLLLAYSGYGDKDARVTAAI-------------------------------- 48 (125)
T ss_pred CCChHHHHHHHhhcccCCccceEEEcCCCcEEEecccCcchhHHHHHH--------------------------------
Confidence 556667777777888889999999999999999999844445555555
Q ss_pred hhhhhhhcCCCCCCccccCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCC
Q psy6241 85 LSDILALEGPQESPLLSNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNG 164 (211)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~G 164 (211)
+||||.+|+|+|..+|++|+|+++++|||+|
T Consensus 49 -------------------------------------------------asniWAAyer~gn~af~e~~Lkf~lldcenG 79 (125)
T KOG4107|consen 49 -------------------------------------------------ASNIWAAYERRGNQAFNEDDLKFTLLDCENG 79 (125)
T ss_pred -------------------------------------------------HHHHHHHHHHhccccccccCceeeeeeecCC
Confidence 5555555555555566778888889999999
Q ss_pred eEEhhhhhhheeeeeeccCccccchHHHHHHHHHHhhhhhcccccC
Q psy6241 165 KVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVNT 210 (211)
Q Consensus 165 ri~i~~Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~pL~~i~~~ 210 (211)
+|+|++|++||||+||++++++||+|+|+++|+.|||+||.||+.+
T Consensus 80 ~vaiT~VA~~LLc~yAk~tvglGmlkaKa~tLa~YLE~Pl~qisas 125 (125)
T KOG4107|consen 80 VVAITLVARMLLCVYAKKTVGLGMLKAKAHTLAAYLEQPLLQISAS 125 (125)
T ss_pred eeeHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhHHHHhcCC
Confidence 9999999999999999999999999999999999999999999874
No 2
>KOG4107|consensus
Probab=99.94 E-value=4.9e-28 Score=190.55 Aligned_cols=73 Identities=36% Similarity=0.678 Sum_probs=67.1
Q ss_pred CCCCCcchhhHHHHh--hhhcc-CCcceeeEeeecCceeeecCCCC-CCchhhhHhhhhhhhhhhhccccccccchhhhh
Q psy6241 1 MLKPMLKPKVLSQVL--GQANT-EGVQSTMLMSYEGTLLAYSGHKD-NDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMV 76 (211)
Q Consensus 1 ml~~~l~~~vL~q~~--g~~~t-~~~~~~~Ll~~~G~lla~~~~~~-~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~ 76 (211)
|||||++++||+|+| |+.+| ++|+||+|++|+| |+++.. ..+-+.+- ||.+|||+|+.+|+||+|+|+
T Consensus 1 MLkpKALtqVLsQaNTgGV~~tlLln~EG~LLAYsG----ygdkdarvtaAiasn----iWAAyer~gn~af~e~~Lkf~ 72 (125)
T KOG4107|consen 1 MLKPKALTQVLSQANTGGVDGTLLLNKEGLLLAYSG----YGDKDARVTAAIASN----IWAAYERRGNQAFNEDDLKFT 72 (125)
T ss_pred CCChHHHHHHHhhcccCCccceEEEcCCCcEEEecc----cCcchhHHHHHHHHH----HHHHHHHhccccccccCceee
Confidence 999999999999999 99999 8999999999999 999964 45555555 699999999999999999999
Q ss_pred hhhhh
Q psy6241 77 LMECS 81 (211)
Q Consensus 77 l~~c~ 81 (211)
+|+||
T Consensus 73 lldce 77 (125)
T KOG4107|consen 73 LLDCE 77 (125)
T ss_pred eeeec
Confidence 99999
No 3
>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]
Probab=99.57 E-value=1.1e-14 Score=116.73 Aligned_cols=102 Identities=19% Similarity=0.317 Sum_probs=96.0
Q ss_pred ccCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhh-hheeeee
Q psy6241 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA-NVLLCLY 179 (211)
Q Consensus 101 ~~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va-~lLLcl~ 179 (211)
.+||+++++++.||.+|+...|++.|++++||++|.+.++-+|.-. .|..++++|++|+.++|+|++.+++ ..+|.++
T Consensus 16 v~gv~ga~Ivs~DGL~ia~~~p~~~d~e~vaA~~a~~~g~~er~~~-~l~~g~leqi~I~g~~g~i~l~~~g~~~il~~~ 94 (119)
T COG2018 16 VPGVRGALVVSKDGLPIAAELPGNVDAEIVAAMAATALGLAERAAD-ELGGGELEQIMIEGKKGKILLYDAGDDAILVVL 94 (119)
T ss_pred ccCceEEEEEccCCceEeecCCCcccHHHHHHHHHHHHHHhHHHHH-HhCCCCceEEEEeccccEEEEEEcCCceEEEEE
Confidence 6899999999999999999999999999999999999999998664 4678999999999999999999999 7999999
Q ss_pred eccCccccchHHHHHHHHHHhhhh
Q psy6241 180 AKENVCFGMLRAKAEALATYLEAP 203 (211)
Q Consensus 180 a~~~v~~GlLk~K~~aLa~yLe~p 203 (211)
+++++++|++|..++..++.+++-
T Consensus 95 a~~~~nLGli~~e~k~aa~~i~~~ 118 (119)
T COG2018 95 ADEGTNLGLIRMEMKRAAEKIAAL 118 (119)
T ss_pred cCCCCcchhhhhHHHHHHHHHhhc
Confidence 999999999999999999998763
No 4
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=99.17 E-value=3.3e-11 Score=87.60 Aligned_cols=79 Identities=30% Similarity=0.451 Sum_probs=72.2
Q ss_pred ccCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhh-heeeee
Q psy6241 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVAN-VLLCLY 179 (211)
Q Consensus 101 ~~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~-lLLcl~ 179 (211)
..||.+++|++.||.+|++....+++++.+||+++.+|...++.+... ..++++++++++++|+++++++++ ++|+++
T Consensus 12 ~~gv~~~~l~~~dG~~i~~~~~~~~~~~~~aa~~a~~~~~~~~~~~~l-~~~~~~~v~i~~~~~~i~i~~~~~~~~L~v~ 90 (91)
T PF03259_consen 12 VPGVRGAVLVDKDGLVIASSGIDDDDAEKLAAMAASLLAAAEKLAKEL-GEGELEQVRIETEKGEIIITPVGDFYLLVVL 90 (91)
T ss_dssp STTEEEEEEEETTSEEEEETSSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSEEEEEEEESSEEEEEEECSTCEEEEEE
T ss_pred CCCeeEEEEEcCCCCEEEEecCCcccHHHHHHHHHHHHHHHHHHHHHh-CCCCcEEEEEEECCCEEEEEEcCCCEEEEEE
Confidence 579999999999999999966678899999999999999999988764 489999999999999999999996 899887
Q ss_pred e
Q psy6241 180 A 180 (211)
Q Consensus 180 a 180 (211)
+
T Consensus 91 ~ 91 (91)
T PF03259_consen 91 A 91 (91)
T ss_dssp E
T ss_pred C
Confidence 4
No 5
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=97.59 E-value=0.00037 Score=55.85 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=76.9
Q ss_pred cccCceeeEeeccccceeeecCCCC-CCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeee
Q psy6241 100 LSNGLFSKRLMSYEGTLLAYSGHKD-NDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCL 178 (211)
Q Consensus 100 ~~~gV~s~~L~~~eG~LlA~a~~~d-~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl 178 (211)
..+||.++++-|.||..|+....++ .+.+.-+++.+. |....+++. .++-.+-|+++.-.++..++......+.+-+
T Consensus 13 ~v~Gl~~I~itDrDGvpi~~v~~~~~~~~~~~~~~~~t-f~~a~~Q~~-KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~ 90 (119)
T PF08923_consen 13 RVDGLQAIVITDRDGVPIAKVSSDSAPESAMRPSLLST-FAMAIDQAS-KLGLGKNKSIIAYYDSYQVVQFNKLPLYITF 90 (119)
T ss_dssp GSTTEEEEEEEETTS-EEEEEE-TTS-GGGGSHHHHCC-HHHHHHHHT-TSSS-SEEEEEEEESSEEEEEEEETTEEEEE
T ss_pred ccCCeEEEEEECCCCcEEEEecCCCCcchhhhhHHHHH-HHHHhhccc-ccCCCCceEEEEEeCCEEEEEEeCCCeEEEE
Confidence 3679999999999999999987644 344455666555 555555442 4567888999999999999999999999999
Q ss_pred eeccCccccchHHHHHHHHHHhh
Q psy6241 179 YAKENVCFGMLRAKAEALATYLE 201 (211)
Q Consensus 179 ~a~~~v~~GlLk~K~~aLa~yLe 201 (211)
+|.++++.|+++.=-+.|..+|+
T Consensus 91 ias~~aN~G~il~l~~~L~~~l~ 113 (119)
T PF08923_consen 91 IASSNANTGLILSLEEELAPILN 113 (119)
T ss_dssp EEETTS-HHHHHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHhHHHHHHHHH
Confidence 99999999999988888887774
No 6
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=97.27 E-value=0.00012 Score=52.96 Aligned_cols=64 Identities=28% Similarity=0.416 Sum_probs=55.7
Q ss_pred hhccCCcceeeEeeecCceeeecCCCCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhh
Q psy6241 17 QANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECS 81 (211)
Q Consensus 17 ~~~t~~~~~~~Ll~~~G~lla~~~~~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~ 81 (211)
..++.+++..++++.+|.++++.+.++.+++..||+++.+|.+.++.++... +++++++.++|+
T Consensus 9 l~~~~gv~~~~l~~~dG~~i~~~~~~~~~~~~~aa~~a~~~~~~~~~~~~l~-~~~~~~v~i~~~ 72 (91)
T PF03259_consen 9 LQSVPGVRGAVLVDKDGLVIASSGIDDDDAEKLAAMAASLLAAAEKLAKELG-EGELEQVRIETE 72 (91)
T ss_dssp HHHSTTEEEEEEEETTSEEEEETSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSEEEEEEEES
T ss_pred HhCCCCeeEEEEEcCCCCEEEEecCCcccHHHHHHHHHHHHHHHHHHHHHhC-CCCcEEEEEEEC
Confidence 3456899999999999999999666667999999999999999999998754 888888888887
No 7
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=91.19 E-value=0.53 Score=36.34 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=60.0
Q ss_pred ceeeEeeccccceeeecCCC-CCCchhhHHHHHHHHHHHHhcCcc---ccccCcceeeEEEecC---------CeEEhhh
Q psy6241 104 LFSKRLMSYEGTLLAYSGHK-DNDGTVIAAITSNIWSAFEKNGRS---AFKEDSLQMVLMECSN---------GKVAITQ 170 (211)
Q Consensus 104 V~s~~L~~~eG~LlA~a~~~-d~da~vvAAIasnIW~ayer~g~~---a~~~d~Lq~llie~e~---------Gri~i~~ 170 (211)
+..+.+++.||.+.|++... .-.+.=+..|+. .++..... .+.-+.-++.++-.++ +-++|..
T Consensus 16 ~~~aaI~~~dG~vwA~s~~f~~~~~~E~~~i~~----~f~~~~~~~~~gi~l~G~kY~~~~~d~~~i~~k~~~~G~~i~k 91 (121)
T PF00235_consen 16 ITKAAIIGSDGSVWASSPGFSNISPEEAKAIIK----AFNNPSKFPSNGITLGGKKYIVLRADDNSIYGKKGKGGIIIVK 91 (121)
T ss_dssp ESEEEEEETTSSEEEEETTGGGCSHHHHHHHHH----HHHSSSHHHHH-EEETTEEEEEEEEETTEEEEEETTEEEEEEE
T ss_pred EeEEEEEcCCCCEEEecCCCCCCCHHHHHHHHH----HhcCchhcccCCeEEcCcEeEEEecCCceEEeeCCCCcEEEEE
Confidence 89999999999999988764 444444444432 22322111 1233445555555554 3455555
Q ss_pred hhhheeeeeeccCccccchHHHHHHHHHHh
Q psy6241 171 VANVLLCLYAKENVCFGMLRAKAEALATYL 200 (211)
Q Consensus 171 Va~lLLcl~a~~~v~~GlLk~K~~aLa~yL 200 (211)
-...++.-+.+++...|.....++.+++||
T Consensus 92 t~~~ivIg~y~~~~~~~~~~~~v~~lA~yL 121 (121)
T PF00235_consen 92 TKQAIVIGMYDESIQPGNCNKAVEKLADYL 121 (121)
T ss_dssp CSSEEEEEEEETTSTHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence 556666666666899999999999999998
No 8
>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]
Probab=88.30 E-value=0.74 Score=37.36 Aligned_cols=60 Identities=18% Similarity=0.326 Sum_probs=50.6
Q ss_pred CCcceeeEeeecCceeeecCCCCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhh
Q psy6241 21 EGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECS 81 (211)
Q Consensus 21 ~~~~~~~Ll~~~G~lla~~~~~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~ 81 (211)
.++++.++...+|-+++..-+.+.|++++||++|-+..+=+|.-+. |+.+++.+++++.+
T Consensus 17 ~gv~ga~Ivs~DGL~ia~~~p~~~d~e~vaA~~a~~~g~~er~~~~-l~~g~leqi~I~g~ 76 (119)
T COG2018 17 PGVRGALVVSKDGLPIAAELPGNVDAEIVAAMAATALGLAERAADE-LGGGELEQIMIEGK 76 (119)
T ss_pred cCceEEEEEccCCceEeecCCCcccHHHHHHHHHHHHHHhHHHHHH-hCCCCceEEEEecc
Confidence 7889999999999999998887779999999999999988887653 66677777777644
No 9
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=88.18 E-value=5.1 Score=31.79 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=63.5
Q ss_pred ceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeeeccC
Q psy6241 104 LFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKEN 183 (211)
Q Consensus 104 V~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a~~~ 183 (211)
|++++++|.+|..+.+--..+....-...+-..++........ -..-+++.++-+++-.+.+++-++++++++
T Consensus 2 I~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~ 74 (141)
T PF01217_consen 2 IKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNS-------KQSPIFEHDNYRIVYKRYSDLYFVVVGDEN 74 (141)
T ss_dssp EEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSS-------SSTSEEEETTEEEEEEEETTEEEEEEESST
T ss_pred EEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhccc-------ccceeeecccceeeeEeeccEEEEEEeecc
Confidence 6899999999998887766444444434444444444443321 113367899999999999999999999988
Q ss_pred ccccchHHHHHHHHHHhhhhhccc
Q psy6241 184 VCFGMLRAKAEALATYLEAPLKQV 207 (211)
Q Consensus 184 v~~GlLk~K~~aLa~yLe~pL~~i 207 (211)
.+.=++-.=++.+.+-|+.-+..+
T Consensus 75 eNel~~~e~l~~~v~~l~~~~~~v 98 (141)
T PF01217_consen 75 ENELLLLEFLHRLVEVLDDYFGNV 98 (141)
T ss_dssp SBHHHHHHHHHHHHHHHHHHHSS-
T ss_pred cchHHHHHHHHHhhhhhhhhhccc
Confidence 775555555555555555555444
No 10
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=81.51 E-value=9.2 Score=30.37 Aligned_cols=96 Identities=18% Similarity=0.247 Sum_probs=59.6
Q ss_pred CceeeEeeccc-cceeeecCC-CCCCchhhHHHHHHHHHHHHhcCcc---ccccCcceeeEEEecC---------CeEEh
Q psy6241 103 GLFSKRLMSYE-GTLLAYSGH-KDNDGTVIAAITSNIWSAFEKNGRS---AFKEDSLQMVLMECSN---------GKVAI 168 (211)
Q Consensus 103 gV~s~~L~~~e-G~LlA~a~~-~d~da~vvAAIasnIW~ayer~g~~---a~~~d~Lq~llie~e~---------Gri~i 168 (211)
.|..+-+++.| |++-|++.. ....++=+.+|+. +++..... -+.-..-+++.+..++ +-+++
T Consensus 15 ~~~~aAI~g~d~g~vwA~s~~~f~~t~~E~~~i~~----~f~d~~~~~~~Gi~l~G~KY~~l~~d~~~i~~kk~~~Gi~i 90 (127)
T cd00148 15 KVDSAAIVGHDDGSVWAASAGGFNLTPEEVGTLVA----GFKDPDGVFSTGLTLGGQKYMVIRADDRSIYGKKGAGGVVI 90 (127)
T ss_pred CcCEEEEEecCCCCeEEecCCCCccCHHHHHHHHH----HccCccccccCCEEECCeEEEEEecCccEEEeeeCCCeEEE
Confidence 57788888888 999998664 3444444444432 23322111 1223444555555443 23444
Q ss_pred hhhhhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241 169 TQVANVLLCLYAKENVCFGMLRAKAEALATYLEA 202 (211)
Q Consensus 169 ~~Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~ 202 (211)
..-...|+..+.++++..|-.......|++||.+
T Consensus 91 ~kT~~~ivi~~y~e~~~~g~~~~~v~~ladYL~~ 124 (127)
T cd00148 91 VKTKQALVIGMYEEGVQPGQANKVVEKLADYLRS 124 (127)
T ss_pred EECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4445666666666679999999999999999975
No 11
>KOG1755|consensus
Probab=76.11 E-value=11 Score=30.98 Aligned_cols=97 Identities=22% Similarity=0.271 Sum_probs=66.1
Q ss_pred CceeeEeecccc-ceeeecCCCCCCchhhHHHH--HHHHHHHHhcCccccccCcceeeEEEecCCeE----------Ehh
Q psy6241 103 GLFSKRLMSYEG-TLLAYSGHKDNDGTVIAAIT--SNIWSAFEKNGRSAFKEDSLQMVLMECSNGKV----------AIT 169 (211)
Q Consensus 103 gV~s~~L~~~eG-~LlA~a~~~d~da~vvAAIa--snIW~ayer~g~~a~~~d~Lq~llie~e~Gri----------~i~ 169 (211)
-|+.+-++..+| ++=|-+....-.+..+.++. -+-|..+..+|. .-...++++++.|.+++ .|.
T Consensus 16 ~v~~AAIvg~~~~SVWA~S~~f~~~~~e~~~~v~~F~d~~~~~~~Gl---~L~Gqkylv~~ge~~~~~~gk~~~~gv~i~ 92 (128)
T KOG1755|consen 16 HVTRAAIVGYDGGSVWAASAGFNVKPSEIPAIVAGFKDPGGLAGTGL---TLGGQKYLVVRGEEGRVIRGKEGTGGVTIK 92 (128)
T ss_pred ccceeeEEecCCCeeEEecCCCcccHHHHHHHHhcccCcccccccce---eecccEEEEEecccceEEecccCCCcEEEE
Confidence 577788888855 88777664344444444432 223444555553 33556799999995443 444
Q ss_pred hhhhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241 170 QVANVLLCLYAKENVCFGMLRAKAEALATYLEA 202 (211)
Q Consensus 170 ~Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~ 202 (211)
.-...|+..+-++.+-.|..+.+.+.|++||.+
T Consensus 93 kT~~~li~~~y~e~v~~g~~~k~ve~LadYL~~ 125 (128)
T KOG1755|consen 93 KTGQALIFSIYKEGVQPGQCNKVVESLADYLRE 125 (128)
T ss_pred EcceEEEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 445677778888899999999999999999975
No 12
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=69.51 E-value=34 Score=27.06 Aligned_cols=98 Identities=23% Similarity=0.222 Sum_probs=60.1
Q ss_pred cCceeeEeeccccceeeecCC--C-CCCchhhHHHHHHHHH--HHHhcCccccccCcceeeEEEecCC---------eEE
Q psy6241 102 NGLFSKRLMSYEGTLLAYSGH--K-DNDGTVIAAITSNIWS--AFEKNGRSAFKEDSLQMVLMECSNG---------KVA 167 (211)
Q Consensus 102 ~gV~s~~L~~~eG~LlA~a~~--~-d~da~vvAAIasnIW~--ayer~g~~a~~~d~Lq~llie~e~G---------ri~ 167 (211)
.-+..+.+...||++-|++.. - ...++=+.+|+..... ....+| +.-..-+++++..++. -++
T Consensus 15 g~~~~AaI~g~dGsvWA~s~g~~f~~~~~~E~~~i~~~f~~~~~~~~~G---i~l~G~Ky~~~~~d~~~i~~kk~~~Gv~ 91 (129)
T smart00392 15 GCVDAAAIGGKDGSVWAASAGGNFQKITPEEIAAIAALFNSLAAVFSNG---LTLGGQKYMVIRADDRSIMGKKGAGGVV 91 (129)
T ss_pred CCCcEEEEEeCCCCeeeccCCCCCCcCCHHHHHHHHHHccCcchhccCC---eEECCeEEEEEEecCcEEEeecCCceEE
Confidence 367788889899999998764 2 2233334555443211 122222 2334556666665532 233
Q ss_pred hhhhhhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241 168 ITQVANVLLCLYAKENVCFGMLRAKAEALATYLEA 202 (211)
Q Consensus 168 i~~Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~ 202 (211)
|..-...++..+.++++..|-.....+.|++||.+
T Consensus 92 i~kT~~aivI~~y~e~~~~g~~~~~v~~ladYL~~ 126 (129)
T smart00392 92 IVKTKQALIIGMYKEGVQPGQANKTVEKLADYLRS 126 (129)
T ss_pred EEECCCEEEEEECCCCCChHHHHHHHHHHHHHHHH
Confidence 33334555555566679999999999999999975
No 13
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=57.58 E-value=24 Score=28.20 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=32.2
Q ss_pred ccCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCc
Q psy6241 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGR 146 (211)
Q Consensus 101 ~~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~ 146 (211)
-.||-++.-|+++|.|++|.++ -+...|-++|.+..++.+-++
T Consensus 9 lpGv~AAg~Fs~~G~l~e~~G~---l~~~~a~m~A~mc~An~~m~~ 51 (108)
T PF09941_consen 9 LPGVVAAGEFSDDGKLVEYKGE---LDEEMAEMLAKMCAANTRMGN 51 (108)
T ss_pred CCCeEEEEEECCCCeEEeeecC---CCHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999884 345556666666666666554
No 14
>KOG4115|consensus
Probab=55.40 E-value=81 Score=24.92 Aligned_cols=79 Identities=8% Similarity=0.085 Sum_probs=51.8
Q ss_pred ccCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeee
Q psy6241 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYA 180 (211)
Q Consensus 101 ~~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a 180 (211)
-.||.|+++++++|.+|-++-+ -.....+|+...+.-...+..-..--..++|-++=+=...+-+.+++=.++.+-++=
T Consensus 15 ~~gV~giiv~d~~GvpikTt~d-~~~t~~ya~~l~~L~~kars~VrdlDpsn~LtflRlRTkk~Eimvap~~~~~iiVVQ 93 (97)
T KOG4115|consen 15 YKGVTGIIVVDNAGVPIKTTLD-NTTTQQYAALLHPLVEKARSVVRDLDPSNDLTFLRLRTKKHEIMVAPDEDFTIIVVQ 93 (97)
T ss_pred cCCceeEEEECCCCcEeEeccC-chHHHHHHHHHHHHHHHHHHHHHccCCcCceEEEEEeeccceEEEcCCCCEEEEEEe
Confidence 4689999999999988887664 355667777777644444433332224577777777777777777665555554443
No 15
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=54.43 E-value=24 Score=28.20 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=28.5
Q ss_pred cCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHh
Q psy6241 102 NGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEK 143 (211)
Q Consensus 102 ~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer 143 (211)
.|+-++=-|++||.|++|-++ -++..|.+++.+..+..-
T Consensus 12 ~Gv~AAGefs~DGkLv~Ykgd---m~k~~A~maAkmcaAnnm 50 (109)
T COG4831 12 KGVMAAGEFSPDGKLVEYKGD---MPKEMAEMAAKMCAANNM 50 (109)
T ss_pred cceeEeceeCCCCceEEeeCC---CCHHHHHHHHHHHHHHHH
Confidence 467777789999999999774 466677777666555443
No 16
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=36.04 E-value=1.8e+02 Score=27.69 Aligned_cols=87 Identities=16% Similarity=0.236 Sum_probs=59.8
Q ss_pred eeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeeeccCcc
Q psy6241 106 SKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVC 185 (211)
Q Consensus 106 s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a~~~v~ 185 (211)
-+.+++..|.+|=+.--.|+.....-|+...|=+-++.++ |.|+.+ ..++.|+++..-+.++|+.+++..-.
T Consensus 13 h~fIlS~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~~~~------d~l~~i--~~~~~~ivfl~r~pl~lv~vS~~~e~ 84 (415)
T PF03164_consen 13 HFFILSSAGKPIYSRYGDEDKLSSLMGVIQAIISFFQSNG------DELRSI--RAGDHRIVFLNRGPLILVAVSKTGES 84 (415)
T ss_pred eEEEECCCCceeEEecCChHHHHHHHHHHHHHHHHHHhCC------CcEEEE--EeCCEEEEEEecCCEEEEEEcCCcCC
Confidence 4788899999997755222333334444456667777655 667766 68888999888778999999987666
Q ss_pred ccchHHHHHHHHHHh
Q psy6241 186 FGMLRAKAEALATYL 200 (211)
Q Consensus 186 ~GlLk~K~~aLa~yL 200 (211)
-..|+.-.+-+=.++
T Consensus 85 ~~~l~~qL~~ly~qi 99 (415)
T PF03164_consen 85 ESQLRKQLDYLYSQI 99 (415)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666766665544443
No 17
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=32.01 E-value=1e+02 Score=24.61 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=55.0
Q ss_pred EeeecCceeeecCCCCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhhhhhhhhhhhhc----CCCCCCccccC
Q psy6241 28 LMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSVSFLSDILALE----GPQESPLLSNG 103 (211)
Q Consensus 28 Ll~~~G~lla~~~~~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~~~~~~~~~~~~----~~~~~~~~~~g 103 (211)
-+.++|.|++|-++ -.+..|.+++-.-.|.+--|.. + -+-|-+++ .||..-+++.|
T Consensus 19 efs~DGkLv~Ykgd---m~k~~A~maAkmcaAnnmM~~~--------------q---A~~~t~~sg~~w~P~~gwa~agg 78 (109)
T COG4831 19 EFSPDGKLVEYKGD---MPKEMAEMAAKMCAANNMMGDM--------------Q---ASGYTALSGMNWTPQNGWAVAGG 78 (109)
T ss_pred eeCCCCceEEeeCC---CCHHHHHHHHHHHHHHHHHHHH--------------h---hhhhhhhhcCccccccceEEecC
Confidence 57889999999887 7788898888776666554421 0 12333444 59999999999
Q ss_pred ceeeEeeccccceeeec
Q psy6241 104 LFSKRLMSYEGTLLAYS 120 (211)
Q Consensus 104 V~s~~L~~~eG~LlA~a 120 (211)
=-++.++.+-|+-+--.
T Consensus 79 ~yavci~Gn~GVFVe~~ 95 (109)
T COG4831 79 KYAVCIMGNVGVFVELD 95 (109)
T ss_pred ceEEEEecceeEEEEcc
Confidence 99999999999988663
No 18
>PHA02616 VP2/VP3; Provisional
Probab=31.37 E-value=5.6 Score=35.46 Aligned_cols=75 Identities=20% Similarity=0.308 Sum_probs=59.0
Q ss_pred chhhhHhhhhhhhhhhhccccccc---cchhhhhhhhhhhhhhhhhhhhcCCCCCCccccCceeeEeeccccceeeec
Q psy6241 46 GTVIAAITSNIWSAFEKNGRSAFK---EDSLQMVLMECSVSFLSDILALEGPQESPLLSNGLFSKRLMSYEGTLLAYS 120 (211)
Q Consensus 46 a~v~aAIasNiW~ay~~~g~~a~~---~d~l~~~l~~c~~~~~~~~~~~~~~~~~~~~~~gV~s~~L~~~eG~LlA~a 120 (211)
..|---||--||++|-+.|+...+ .++||-.|=+.+--|=+.+-..--|..-.+..|.|++++--+.|-.+++-.
T Consensus 39 qdvfnrIa~GIWtSYYnaGrtvvnR~~s~ElqrLL~dleyGfr~ala~igesDPVnaiv~qVrs~v~~~RerEllqi~ 116 (259)
T PHA02616 39 QDVFNRIARGIWTSYYNAGRTVVNRTASRELQRLLSDLEYGFRRALASIGESDPVNAIVNQVRSAVTYNRERELLQIL 116 (259)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 346677999999999999998877 788999998888666665555556666677888888888887777776654
No 19
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=23.28 E-value=38 Score=34.29 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.5
Q ss_pred CchhhhHhhhhhhhhhhhc
Q psy6241 45 DGTVIAAITSNIWSAFEKN 63 (211)
Q Consensus 45 ~a~v~aAIasNiW~ay~~~ 63 (211)
-.|+|||||+-+|.-++.+
T Consensus 204 H~k~TAAIA~~Ly~~~~~~ 222 (648)
T TIGR02578 204 HLKLTAAIASALYRYLKEN 222 (648)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4799999999999977766
No 20
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=20.20 E-value=1.6e+02 Score=23.27 Aligned_cols=22 Identities=5% Similarity=-0.126 Sum_probs=19.4
Q ss_pred ccCceeeEeeccccceeeecCC
Q psy6241 101 SNGLFSKRLMSYEGTLLAYSGH 122 (211)
Q Consensus 101 ~~gV~s~~L~~~eG~LlA~a~~ 122 (211)
..|+.+.++++++|.++...+.
T Consensus 78 ~~G~Pt~vfl~~~G~~~~~~~~ 99 (124)
T cd02955 78 QGGWPLNVFLTPDLKPFFGGTY 99 (124)
T ss_pred CCCCCEEEEECCCCCEEeeeee
Confidence 5699999999999999987765
Done!