Query psy6241
Match_columns 211
No_of_seqs 96 out of 98
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 21:22:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vet_B P14, late endosomal/lys 99.9 8.3E-25 2.8E-29 173.2 10.2 109 102-210 17-125 (125)
2 3leq_A Uncharacterized protein 99.6 3.9E-15 1.3E-19 117.4 6.9 105 101-206 16-122 (126)
3 3t12_B Gliding protein MGLB; G 99.3 1.8E-12 6.3E-17 104.3 7.6 106 101-207 23-133 (136)
4 1j3w_A Giding PROTEIN-MGLB; gl 99.3 7.6E-12 2.6E-16 102.9 8.1 104 102-207 27-136 (163)
5 3kye_A Roadblock/LC7 domain, R 99.2 3.1E-11 1.1E-15 98.9 7.3 105 101-206 38-144 (150)
6 1vet_B P14, late endosomal/lys 99.2 9.8E-12 3.3E-16 98.1 2.8 77 1-81 1-77 (125)
7 3leq_A Uncharacterized protein 97.5 5E-05 1.7E-09 59.4 2.7 70 11-81 5-77 (126)
8 3cpt_A Mitogen-activated prote 96.0 0.034 1.2E-06 45.2 8.6 101 100-202 34-135 (143)
9 1j3w_A Giding PROTEIN-MGLB; gl 95.6 0.0083 2.8E-07 48.9 3.6 60 20-81 26-90 (163)
10 4ftx_A Protein SLM4; EGO compl 95.2 0.11 3.6E-06 43.2 8.8 99 100-198 28-151 (170)
11 2hz5_A Dynein light chain 2A, 93.7 0.12 4.2E-06 39.6 5.8 77 102-182 25-104 (106)
12 3l7h_A RE64145P, roadblock; LC 92.8 0.18 6E-06 38.1 5.3 80 102-182 16-95 (97)
13 3lgo_A Protein SLM4; roadblock 92.5 1 3.4E-05 37.3 9.8 99 102-200 40-163 (172)
14 3msh_A Hepatitis B virus X-int 90.8 0.8 2.7E-05 35.0 7.0 79 99-184 13-92 (99)
15 3t12_B Gliding protein MGLB; G 89.7 0.15 5E-06 40.5 2.1 70 11-81 13-87 (136)
16 3nul_A Profilin I; cytoskeleto 89.2 1.8 6.1E-05 33.6 8.1 97 102-202 17-127 (130)
17 3d9y_A Profilin; yeast, actin- 89.2 1.4 4.7E-05 34.0 7.4 98 102-202 15-124 (127)
18 1acf_A Profilin I; protein bin 83.9 3.8 0.00013 31.3 7.2 97 103-202 15-122 (125)
19 2vgl_S AP-2 complex subunit si 83.7 6.7 0.00023 30.2 8.7 97 104-207 2-98 (142)
20 1ypr_A Profilin; actin-binding 83.6 6.4 0.00022 30.2 8.4 97 103-202 14-122 (125)
21 1w63_Q Adapter-related protein 83.3 9 0.00031 30.2 9.4 97 104-207 2-98 (158)
22 3tjz_C Coatomer subunit zeta-1 82.3 6.6 0.00023 31.1 8.3 96 102-207 11-109 (153)
23 2v8f_A Profilin-2, profilin II 79.1 5.5 0.00019 31.3 6.7 98 102-202 15-137 (140)
24 3kye_A Roadblock/LC7 domain, R 76.3 1.5 5.1E-05 35.5 2.7 70 10-81 26-99 (150)
25 2pbd_P Profilin-1, profilin I; 71.2 8.2 0.00028 30.2 5.8 98 102-202 14-136 (139)
26 3mcb_B Transcription factor BT 67.9 1.3 4.3E-05 30.7 0.4 38 21-63 5-42 (58)
27 3lkx_A Transcription factor BT 58.6 1.7 5.9E-05 30.8 -0.4 38 21-63 5-42 (66)
28 3nec_A Profilin, inflammatory 50.4 49 0.0017 26.7 7.0 97 101-202 18-163 (166)
29 2vgl_M AP-2 complex subunit MU 46.8 69 0.0024 28.9 8.2 95 104-207 2-96 (435)
30 1yzs_A Sulfiredoxin; PARB doma 45.6 6.3 0.00021 30.8 0.9 37 55-96 84-120 (121)
31 1w63_M Adaptor-related protein 37.7 1.5E+02 0.005 26.6 8.8 96 104-207 3-98 (423)
32 2p5q_A Glutathione peroxidase 32.8 46 0.0016 24.2 4.0 32 102-133 129-163 (170)
33 1xw3_A Sulfiredoxin; retroredu 27.3 19 0.00065 27.5 0.9 37 55-96 73-109 (110)
34 3f9u_A Putative exported cytoc 26.0 91 0.0031 23.1 4.6 43 101-143 128-170 (172)
35 3cmi_A Peroxiredoxin HYR1; thi 22.8 78 0.0027 23.5 3.7 28 106-133 136-163 (171)
36 2vup_A Glutathione peroxidase- 21.2 70 0.0024 24.4 3.2 16 106-121 153-168 (190)
37 1jfu_A Thiol:disulfide interch 20.0 90 0.0031 23.3 3.5 31 103-133 143-175 (186)
No 1
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=99.91 E-value=8.3e-25 Score=173.19 Aligned_cols=109 Identities=60% Similarity=0.988 Sum_probs=96.5
Q ss_pred cCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeeec
Q psy6241 102 NGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAK 181 (211)
Q Consensus 102 ~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a~ 181 (211)
.||++++|++.||.+|+++.++++|++.+||++|++|+.|++.+.+.|.++.++++|||+++|++.++++++.+||++++
T Consensus 17 ~gv~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~ 96 (125)
T 1vet_B 17 GGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAK 96 (125)
T ss_dssp TTEEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEEC
T ss_pred CCceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeC
Confidence 48888888888888888888888999999999999999999999987888999999999999999999998899999999
Q ss_pred cCccccchHHHHHHHHHHhhhhhcccccC
Q psy6241 182 ENVCFGMLRAKAEALATYLEAPLKQVVNT 210 (211)
Q Consensus 182 ~~v~~GlLk~K~~aLa~yLe~pL~~i~~~ 210 (211)
+++++|+++.|++.+++||.+|||+|+.+
T Consensus 97 ~~a~lGlv~~~m~~lv~~L~~~lr~~~~~ 125 (125)
T 1vet_B 97 ETVGFGMLKAKAQALVQYLEEPLTQVAAS 125 (125)
T ss_dssp TTSCHHHHHHHHHHHHHHHHCC-------
T ss_pred CCCChHHHHHHHHHHHHHHhhhhhhhccC
Confidence 99999999999999999999999999863
No 2
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=99.56 E-value=3.9e-15 Score=117.37 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=81.3
Q ss_pred ccCceeeEeeccccceeeecCCCC-CCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhh-hheeee
Q psy6241 101 SNGLFSKRLMSYEGTLLAYSGHKD-NDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA-NVLLCL 178 (211)
Q Consensus 101 ~~gV~s~~L~~~eG~LlA~a~~~d-~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va-~lLLcl 178 (211)
+.||.+++|++.||.+|+++.+.+ +|++.+||++|.+|+..++.+.+ |..+.+++++||+++|.+++++++ +.+||+
T Consensus 16 v~gv~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~-~~~G~~~qv~ve~~~G~l~v~~ag~~a~L~v 94 (126)
T 3leq_A 16 VAEVDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMD-FRRGPVRQALIEMGKGYLILTAAGPGAHLVV 94 (126)
T ss_dssp CTTEEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC--------------CEEEEECSSCEEEEEESSTTEEEEE
T ss_pred CCCceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEEEeCCCEEEEEEeCCCcEEEE
Confidence 569999999999999999987644 68999999999999999999876 678999999999999999999999 599999
Q ss_pred eeccCccccchHHHHHHHHHHhhhhhcc
Q psy6241 179 YAKENVCFGMLRAKAEALATYLEAPLKQ 206 (211)
Q Consensus 179 ~a~~~v~~GlLk~K~~aLa~yLe~pL~~ 206 (211)
++++++++|+++.+++.+++.+.+-|..
T Consensus 95 la~~~a~lG~v~~em~~~v~ri~~~L~~ 122 (126)
T 3leq_A 95 LTRQGADVGVVAYQMNMLVKKIGEHLSA 122 (126)
T ss_dssp EECTTCCHHHHHHHHHHHHHHC------
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999988877654
No 3
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=99.34 E-value=1.8e-12 Score=104.26 Aligned_cols=106 Identities=18% Similarity=0.167 Sum_probs=95.5
Q ss_pred ccCceeeEeeccccceeeecC----CCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhh-hhe
Q psy6241 101 SNGLFSKRLMSYEGTLLAYSG----HKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA-NVL 175 (211)
Q Consensus 101 ~~gV~s~~L~~~eG~LlA~a~----~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va-~lL 175 (211)
..||++++|++.+|.+|++.+ +.+-|.+.+||++|....+.++-++. +.+++++++++|+++|.+.+.+|+ +++
T Consensus 23 ~~gv~~~~lvd~dG~vIa~~~~~~~~~~~d~~~lAAl~A~~~~a~~~la~~-Lge~~~~~l~~eGe~~~i~i~~vg~~~i 101 (136)
T 3t12_B 23 ETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVASNAAATQALAKL-LGEARFQEEVHQGERMGLYVDEAGEHAL 101 (136)
T ss_dssp HHCCSEEEEEETTC-CCEEEECTTSCCCSCHHHHHHHHHHHHHHHHHHHHH-TTCSCCCCEEEECSSCEEEEEESSTTEE
T ss_pred hcCCeEEEEEcCCCCEEEEeccccCCCCCcHHHHHHHHHHHHHHHHHHHHH-HCCCchhHheEEcCcCCEEEEEcCCCEE
Confidence 368999999999999999986 45679999999999999999998876 467789999999999999999998 699
Q ss_pred eeeeeccCccccchHHHHHHHHHHhhhhhccc
Q psy6241 176 LCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207 (211)
Q Consensus 176 Lcl~a~~~v~~GlLk~K~~aLa~yLe~pL~~i 207 (211)
|+++.++++++|++|.++++.++-|.+-|.+.
T Consensus 102 Lvvifd~~~~LG~Vrl~~kka~~~l~~il~~~ 133 (136)
T 3t12_B 102 LVLVFDETAPLGKVKLHGKAAAAALAAIAEEA 133 (136)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCceEeeehHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877654
No 4
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=99.28 E-value=7.6e-12 Score=102.93 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=93.9
Q ss_pred cCceeeEeeccccceeee-----cCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhh-hhe
Q psy6241 102 NGLFSKRLMSYEGTLLAY-----SGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA-NVL 175 (211)
Q Consensus 102 ~gV~s~~L~~~eG~LlA~-----a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va-~lL 175 (211)
.||++++|++.||.+|++ ..+.+ |++.+||++|.+.+..++.+.. +....++++++|+++|.+.+++++ ..+
T Consensus 27 ~Gv~~avlvs~DGl~ia~~~~~~~~~~~-d~d~lAA~~A~~~sl~~~~a~~-l~~G~~~q~~ve~~~g~l~v~~~g~~a~ 104 (163)
T 1j3w_A 27 TGARYALLIDRKGFVLAHKEALWAPKPP-PLDTLATLVAGNAAATQALAKL-LGEARFQEEVHQGERMGLYVDEAGEHAL 104 (163)
T ss_dssp HCCSEEEEEETTSCEEEEEECTTSCCCS-CHHHHHHHHHHHHHHTHHHHHH-TTCSSCSEEEEECSSCEEEEEESSTTEE
T ss_pred CCceEEEEEcCCCCEEEeecccccCCCC-cHHHHHHHHHHHHHHHHHHHHH-hCCCCceEEEEEeCCcEEEEEEeCCCeE
Confidence 589999999999999999 77766 9999999999999999887754 567889999999999999999999 599
Q ss_pred eeeeeccCccccchHHHHHHHHHHhhhhhccc
Q psy6241 176 LCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207 (211)
Q Consensus 176 Lcl~a~~~v~~GlLk~K~~aLa~yLe~pL~~i 207 (211)
|++++++++++|+++..++.+++.|.+-|+..
T Consensus 105 L~Vla~~~a~lG~v~~~m~~~v~~l~~~L~~~ 136 (163)
T 1j3w_A 105 LVLVFDETAPLGKVKLHGKRASEALARIAEEA 136 (163)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888887766653
No 5
>3kye_A Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces avermitilis}
Probab=99.19 E-value=3.1e-11 Score=98.87 Aligned_cols=105 Identities=17% Similarity=0.205 Sum_probs=92.4
Q ss_pred ccCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccc-cCcceeeEEEecCCeEEhhhhh-hheeee
Q psy6241 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFK-EDSLQMVLMECSNGKVAITQVA-NVLLCL 178 (211)
Q Consensus 101 ~~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~-~d~Lq~llie~e~Gri~i~~Va-~lLLcl 178 (211)
+.||..++|++.||.+.++...+.++++-+||++|.+.+.-++.+.+ |. ...++++|||+++|.+.+++++ ..+|++
T Consensus 38 vpGV~~AvvvS~DGLla~S~~l~~~dae~LAA~aSgl~SLa~~aa~~-~~~~G~vrqv~VE~~~G~l~v~~aG~ga~LaV 116 (150)
T 3kye_A 38 VPHTTSAVLLSCDGLVKSVHGLDPDSADHMAALASGLYSLGRSAGIR-FGDGGDVRQVVVELDSTLLFVSTAGSGTCLAV 116 (150)
T ss_dssp STTEEEEEEEETTSCEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHH-HSSSSCCCEEEEEESSEEEEEEEEETTEEEEE
T ss_pred CCCeeEEEEEcCCCCEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hccCCCeEEEEEEeCCcEEEEEEcCCCcEEEE
Confidence 56999999999999944444556688999999999999999988765 45 7889999999999999999999 689999
Q ss_pred eeccCccccchHHHHHHHHHHhhhhhcc
Q psy6241 179 YAKENVCFGMLRAKAEALATYLEAPLKQ 206 (211)
Q Consensus 179 ~a~~~v~~GlLk~K~~aLa~yLe~pL~~ 206 (211)
++++++++|++.-.++.+++.+.+-|.+
T Consensus 117 la~~~adlGlv~~em~~lv~rig~~Lt~ 144 (150)
T 3kye_A 117 LAGREADAAVLGYEMAMLVKSVRPYLMT 144 (150)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHGGGGC-
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998887764
No 6
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=99.16 E-value=9.8e-12 Score=98.11 Aligned_cols=77 Identities=58% Similarity=0.946 Sum_probs=67.3
Q ss_pred CCCCCcchhhHHHHhhhhccCCcceeeEeeecCceeeecCCCCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhh
Q psy6241 1 MLKPMLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMEC 80 (211)
Q Consensus 1 ml~~~l~~~vL~q~~g~~~t~~~~~~~Ll~~~G~lla~~~~~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c 80 (211)
||||+.++.+|.|+ ++.+++..+|++.+|.+||+++..+.|+..+|||+|++|+.|++.|+..|+++++++++++|
T Consensus 1 ML~~~~L~~~L~~l----~~~gv~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~ 76 (125)
T 1vet_B 1 MLRPKALTQVLSQA----NTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDC 76 (125)
T ss_dssp CCCHHHHHHHHHHH----CCTTEEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEE
T ss_pred CCcHHHHHHHHHHc----CCCCceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEe
Confidence 55555555555544 67899999999999999999887777999999999999999999999999999999999999
Q ss_pred h
Q psy6241 81 S 81 (211)
Q Consensus 81 ~ 81 (211)
+
T Consensus 77 ~ 77 (125)
T 1vet_B 77 M 77 (125)
T ss_dssp T
T ss_pred C
Confidence 9
No 7
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=97.47 E-value=5e-05 Score=59.40 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=48.1
Q ss_pred HHHHhhhh--ccCCcceeeEeeecCceeeecCCCC-CCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhh
Q psy6241 11 LSQVLGQA--NTEGVQSTMLMSYEGTLLAYSGHKD-NDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECS 81 (211)
Q Consensus 11 L~q~~g~~--~t~~~~~~~Ll~~~G~lla~~~~~~-~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~ 81 (211)
|.+++.+- .+.+++..++++.+|-+|+++...+ .++...||++|.+|+..++.++. |+...+++++++|+
T Consensus 5 l~~lL~~l~~~v~gv~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~-~~~G~~~qv~ve~~ 77 (126)
T 3leq_A 5 LDQLLTGLVDRVAEVDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMD-FRRGPVRQALIEMG 77 (126)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC--------------CEEEEECS
T ss_pred HHHHHHHHHhcCCCceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEEEeC
Confidence 45556443 4689999999999999999986543 48899999999999999999987 89999999999998
No 8
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=95.97 E-value=0.034 Score=45.19 Aligned_cols=101 Identities=11% Similarity=0.157 Sum_probs=74.5
Q ss_pred cccCceeeEeeccccceeeecCCCC-CCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeee
Q psy6241 100 LSNGLFSKRLMSYEGTLLAYSGHKD-NDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCL 178 (211)
Q Consensus 100 ~~~gV~s~~L~~~eG~LlA~a~~~d-~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl 178 (211)
.++|++++++-|.||.+|...+.++ .+.+.-..+.+. |.....++. .+.-..-|.++--+++..++-.....+++-+
T Consensus 34 rv~Gl~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsT-f~~A~dQ~s-KLglGknksII~~Y~~yqvVq~n~~Plvit~ 111 (143)
T 3cpt_A 34 SVEGLHAIVVSDRDGVPVIKVANDNAPEHALRPGFLST-FALATDQGS-KLGLSKNKSIICYYNTYQVVQFNRLPLVVSF 111 (143)
T ss_dssp GSTTEEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHH-HHHHHHHHH-HHTCCCEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred ccCCeEEEEEECCCCcEEEEecCCCCchhhcccchhhh-HHHHHHHHh-hcCCCCCceEEEEecCeEEEEEecCCEEEEE
Confidence 4589999999999999998877533 344455555554 444433321 2344677888888888888777888999999
Q ss_pred eeccCccccchHHHHHHHHHHhhh
Q psy6241 179 YAKENVCFGMLRAKAEALATYLEA 202 (211)
Q Consensus 179 ~a~~~v~~GlLk~K~~aLa~yLe~ 202 (211)
+|.++++.|+|..=-+.|..+|++
T Consensus 112 Ias~~aNtG~Il~Le~~L~p~l~~ 135 (143)
T 3cpt_A 112 IASSSANTGLIVSLEKELAPLFEE 135 (143)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCchhHhhhHHHHHHHHHH
Confidence 999999999998877776666653
No 9
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=95.59 E-value=0.0083 Score=48.91 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=51.3
Q ss_pred cCCcceeeEeeecCceeee-----cCCCCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhh
Q psy6241 20 TEGVQSTMLMSYEGTLLAY-----SGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECS 81 (211)
Q Consensus 20 t~~~~~~~Ll~~~G~lla~-----~~~~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~ 81 (211)
..+++..+++..+|-+|+. ....+ |+...||++|.+.+.=++-++. |...+++.++++++
T Consensus 26 v~Gv~~avlvs~DGl~ia~~~~~~~~~~~-d~d~lAA~~A~~~sl~~~~a~~-l~~G~~~q~~ve~~ 90 (163)
T 1j3w_A 26 ETGARYALLIDRKGFVLAHKEALWAPKPP-PLDTLATLVAGNAAATQALAKL-LGEARFQEEVHQGE 90 (163)
T ss_dssp HHCCSEEEEEETTSCEEEEEECTTSCCCS-CHHHHHHHHHHHHHHTHHHHHH-TTCSSCSEEEEECS
T ss_pred cCCceEEEEEcCCCCEEEeecccccCCCC-cHHHHHHHHHHHHHHHHHHHHH-hCCCCceEEEEEeC
Confidence 3589999999999999999 76666 9999999999999998888864 66777888888776
No 10
>4ftx_A Protein SLM4; EGO complex, EGO3, TOR signaling, protein binding; 2.10A {Saccharomyces cerevisiae} PDB: 3lgo_A 4fuw_A
Probab=95.17 E-value=0.11 Score=43.15 Aligned_cols=99 Identities=17% Similarity=0.320 Sum_probs=68.6
Q ss_pred cccCceeeEeecc-ccceeeecCCCCCCc-------------hhhHHHHHHHHHHHHhcCccc---------cccCccee
Q psy6241 100 LSNGLFSKRLMSY-EGTLLAYSGHKDNDG-------------TVIAAITSNIWSAFEKNGRSA---------FKEDSLQM 156 (211)
Q Consensus 100 ~~~gV~s~~L~~~-eG~LlA~a~~~d~da-------------~vvAAIasnIW~ayer~g~~a---------~~~d~Lq~ 156 (211)
-++-+++++|++. +|++|+|+...+.+. +.-+=+.=.=|++=|+.-.+- .+...-+-
T Consensus 28 ~t~~LqSS~LlS~~nGsIlSfa~s~~~~~~~~~~~~~SlnNLKMMsLLikDKWseDE~~p~eQ~t~ScY~~~i~~~~trI 107 (170)
T 4ftx_A 28 KTSSLQSSMIITATNGGILSYATSNNDVPKNSINEINSVNNLKMMSLLIKDKWSEDENDTEEQHSNSCYPVEIDSFKTKI 107 (170)
T ss_dssp SCCSCSEEEEEETTTCCEEEEEECCSSSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCSSEEEEEEETTEEEEE
T ss_pred cCCceeeeEEEEcCCCcEEEEecCCCCcccCCcCccccchhHHHHHHHHHhhhhccccChhhhhcccceeEEeccceeEE
Confidence 3445789999965 999999998644441 223334445799888855431 10011122
Q ss_pred eEEEecCCeEEhhhhh--hheeeeeeccCccccchHHHHHHHHH
Q psy6241 157 VLMECSNGKVAITQVA--NVLLCLYAKENVCFGMLRAKAEALAT 198 (211)
Q Consensus 157 llie~e~Gri~i~~Va--~lLLcl~a~~~v~~GlLk~K~~aLa~ 198 (211)
-.-|.|+=+.|+++|- ++||-++|+.+-++|+|-.|++++..
T Consensus 108 YTYEiEDLHaCVAqIP~SDLLLLfIAd~~yPyGLLv~KmK~al~ 151 (170)
T 4ftx_A 108 YTYEMEDLHTCVAQIPNSDLLLLFIAEGSFPYGLLVIKIERAMR 151 (170)
T ss_dssp EEEEETTEEEEEEECTTSSEEEEEEEETTSCHHHHHHHHHHHHG
T ss_pred EEEEhhhhHHHHhcCCCCCeEEEEeecCCCchHHHHHHHHHHHH
Confidence 2347778888888886 79999999999999999999988654
No 11
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=93.72 E-value=0.12 Score=39.61 Aligned_cols=77 Identities=10% Similarity=0.138 Sum_probs=53.6
Q ss_pred cCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCc---cccccCcceeeEEEecCCeEEhhhhhhheeee
Q psy6241 102 NGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGR---SAFKEDSLQMVLMECSNGKVAITQVANVLLCL 178 (211)
Q Consensus 102 ~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~---~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl 178 (211)
-||.|++++|.+|.+|.++.+ .+-....|+.+|.-..+... +.-.+|+|+++=|=.+.--|.|++=.+++|++
T Consensus 25 kgV~G~iIln~~G~pIrSt~d----~~~~~~yA~li~~L~~~A~~~vr~lDp~deL~fLRiRTkkhEimIapd~~~~LiV 100 (106)
T 2hz5_A 25 KGVQGIIVVNTEGIPIKSTMD----NPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKKNEIMVAPDKDYFLIV 100 (106)
T ss_dssp TTEEEEEEECTTCCEEEESSC----HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEC---CEEEE
T ss_pred CCceEEEEEcCCCCeEEEecC----chHHHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeCCcEEEEEecCCEEEEE
Confidence 489999999999999999864 23334445555555544332 12356899999999999999998888888887
Q ss_pred eecc
Q psy6241 179 YAKE 182 (211)
Q Consensus 179 ~a~~ 182 (211)
+=++
T Consensus 101 vQ~~ 104 (106)
T 2hz5_A 101 IQNP 104 (106)
T ss_dssp EECC
T ss_pred EecC
Confidence 7654
No 12
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=92.81 E-value=0.18 Score=38.14 Aligned_cols=80 Identities=9% Similarity=0.145 Sum_probs=53.9
Q ss_pred cCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeeec
Q psy6241 102 NGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAK 181 (211)
Q Consensus 102 ~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a~ 181 (211)
.||.|+++++.+|.+|-++-+ ...+.-+|+...+++...+..-++--..|+|.++=|=....-|.|.+=.+++|.++-+
T Consensus 16 kgV~G~iI~n~~G~pirst~d-~~~~~~yA~~~~~L~~~a~~~vrdlDp~del~fLRiRTkk~EimIaPd~~f~liVvQ~ 94 (97)
T 3l7h_A 16 KGVVGTIVVNNEGIPVKSTLD-NTTTVQYAGLMSQLADKARSVVRDLDPSNDMTFLRVRSKKHEIMVAPDKDFILIVIQN 94 (97)
T ss_dssp TTEEEEEEEETTSCEEEESSC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEEETTEEEEEEEC
T ss_pred CCceEEEEECCCCCEeEEeCC-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCcEEEEEcCCCEEEEEEec
Confidence 499999999999999987652 2333444444444433333222222345889999888888899988877788877755
Q ss_pred c
Q psy6241 182 E 182 (211)
Q Consensus 182 ~ 182 (211)
+
T Consensus 95 ~ 95 (97)
T 3l7h_A 95 P 95 (97)
T ss_dssp -
T ss_pred C
Confidence 4
No 13
>3lgo_A Protein SLM4; roadblock/LC7, domain SWAP, autophagy, membrane, transmembra transport, vacuole, protein binding; 2.85A {Saccharomyces cerevisiae}
Probab=92.53 E-value=1 Score=37.28 Aligned_cols=99 Identities=20% Similarity=0.374 Sum_probs=65.3
Q ss_pred cCceeeEeec-cccceeeecCCCCCCc-------------hhhHHHHHHHHHHHHhcCcccccc-------Ccce--eeE
Q psy6241 102 NGLFSKRLMS-YEGTLLAYSGHKDNDG-------------TVIAAITSNIWSAFEKNGRSAFKE-------DSLQ--MVL 158 (211)
Q Consensus 102 ~gV~s~~L~~-~eG~LlA~a~~~d~da-------------~vvAAIasnIW~ayer~g~~a~~~-------d~Lq--~ll 158 (211)
.-.++++|++ .+|++|+++...+... +.-|=+.-.=|++=|..-++-..+ +... ---
T Consensus 40 ~~LqSs~LlSatnGsIlSfa~~~~~~~~~~~~e~~SlNNLKMMaLLIkDKWsEDe~d~~~q~~~scy~~~~~~~~triYT 119 (172)
T 3lgo_A 40 SSLQSSMIITATNGGILSYATSNNDVPKNSINEINSVNNLKMMSLLIKDKWSEDENDTEEQHSNSCYPVEIDSFKTKIYT 119 (172)
T ss_dssp CCCSEEEEEETTTCCEEEEECCC------------CHHHHHHHHHHHHHHHHTTTTCC---CCSSBCCEEETTEEECEEE
T ss_pred ccceeeEEEEcCCCcEEEEeccCCccccCCCCcccchhhHHHHHHHHhhcccccccchhHhccccceeecccccceeEEE
Confidence 4578888884 7999999998643221 345556666788766422210000 1111 112
Q ss_pred EEecCCeEEhhhhh--hheeeeeeccCccccchHHHHHHHHHHh
Q psy6241 159 MECSNGKVAITQVA--NVLLCLYAKENVCFGMLRAKAEALATYL 200 (211)
Q Consensus 159 ie~e~Gri~i~~Va--~lLLcl~a~~~v~~GlLk~K~~aLa~yL 200 (211)
-|.|+=..|+++|- ++||-++|+.+-++|||-.|++..-+-+
T Consensus 120 yElEDLHacvAqIP~SdLLLlfIA~~~fPyGLLvmKmK~al~af 163 (172)
T 3lgo_A 120 YEMEDLHTCVAQIPNSDLLLLFIAEGSFPYGLLVIKIERAMREL 163 (172)
T ss_dssp EESSSCEEEEEECTTTCEEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred EehhHHHHHHHhCCCCCeEEEEEecCCCCchHHHHHHHHHHHHH
Confidence 36778888999996 6999999999999999999998765533
No 14
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=90.83 E-value=0.8 Score=34.96 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=57.2
Q ss_pred ccccCceeeEeeccccceeeecCC-CCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheee
Q psy6241 99 LLSNGLFSKRLMSYEGTLLAYSGH-KDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLC 177 (211)
Q Consensus 99 ~~~~gV~s~~L~~~eG~LlA~a~~-~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLc 177 (211)
+...||.|++..|..|.-|++.+. +++.+-++.+|+- -..+--. +.++.--+.||.+.+++.|.+-....++
T Consensus 13 m~~pgvvGvlc~D~qGLcLg~~G~~s~~~AG~i~~la~----~AakL~p---~~~~~P~I~LEsDs~~~~Iqk~~~iTvA 85 (99)
T 3msh_A 13 MKNPSIVGVLCTDSQGLNLGCRGTLSDEHAGVISVLAQ----QAAKLTS---DPTDIPVVCLESDNGNIMIQKHDGITVA 85 (99)
T ss_dssp HTSTTEEEEEEECTTCCEEEEEETCCGGGHHHHHHHHH----HHHHTCC---CSSCCCCEEEEETTEEEEEEEETTEEEE
T ss_pred hccCCcEEEEEECCCCCcccccCCCCcccchHHHHHHH----HHHhcCC---CCCCCCEEEEEeCCceEEEEeCCcEEEE
Confidence 356899999999999999999876 5566666666643 2222111 2235567889999999999999888888
Q ss_pred eeeccCc
Q psy6241 178 LYAKENV 184 (211)
Q Consensus 178 l~a~~~v 184 (211)
+|-..+.
T Consensus 86 V~k~~~~ 92 (99)
T 3msh_A 86 VHKMASL 92 (99)
T ss_dssp EEECC--
T ss_pred EEccchh
Confidence 8866543
No 15
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=89.66 E-value=0.15 Score=40.55 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=52.5
Q ss_pred HHHHhhhhcc-CCcceeeEeeecCceeeecCC----CCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhh
Q psy6241 11 LSQVLGQANT-EGVQSTMLMSYEGTLLAYSGH----KDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECS 81 (211)
Q Consensus 11 L~q~~g~~~t-~~~~~~~Ll~~~G~lla~~~~----~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~ 81 (211)
+.+++..-.. .+++..+|...+|-+|++.+. .+.|....||++|-.-.+=++-++. +.+.+++.++.+++
T Consensus 13 i~~iL~~L~~~~gv~~~~lvd~dG~vIa~~~~~~~~~~~d~~~lAAl~A~~~~a~~~la~~-Lge~~~~~l~~eGe 87 (136)
T 3t12_B 13 AVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVASNAAATQALAKL-LGEARFQEEVHQGE 87 (136)
T ss_dssp HHHHHHHHHHHHCCSEEEEEETTC-CCEEEECTTSCCCSCHHHHHHHHHHHHHHHHHHHHH-TTCSCCCCEEEECS
T ss_pred HHHHHHHHHhhcCCeEEEEEcCCCCEEEEeccccCCCCCcHHHHHHHHHHHHHHHHHHHHH-HCCCchhHheEEcC
Confidence 4455544433 789999999999999999753 4569999999999999999988876 45666666666655
No 16
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=89.24 E-value=1.8 Score=33.55 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=63.5
Q ss_pred cCceeeEeeccccceeeecCCC-CCCchhhHHHHHHHHHHHHhcCc---cccccCcceeeEEEecCCe----------EE
Q psy6241 102 NGLFSKRLMSYEGTLLAYSGHK-DNDGTVIAAITSNIWSAFEKNGR---SAFKEDSLQMVLMECSNGK----------VA 167 (211)
Q Consensus 102 ~gV~s~~L~~~eG~LlA~a~~~-d~da~vvAAIasnIW~ayer~g~---~a~~~d~Lq~llie~e~Gr----------i~ 167 (211)
+.+..+-+++.||++-|++... .-.+.=+.+|+. .|+..+. .-+.-..-+++++-.|.++ ++
T Consensus 17 ~~~~~aAIig~dGsvWA~s~gf~~~~p~E~~~i~~----~f~d~~~~~~~Gl~l~G~Ky~~ir~d~~~~i~~kkg~~Gv~ 92 (130)
T 3nul_A 17 NHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKK----DFEEPGFLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVT 92 (130)
T ss_dssp BCCSEEEEEETTSCEEEECTTCCCCCHHHHHHHHH----HHHSTTSSTTTCEEETTEEEEEEEEETTTEEEEEETTEEEE
T ss_pred CcEeeEEEEeCCCCEEEcCCCcccCCHHHHHHHHH----hccCchhhccCCEEECCeEEEEEEeCCCcEEEEecCCCeEE
Confidence 3688889999999998876543 444555555543 2332221 1233455667777766333 33
Q ss_pred hhhhhhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241 168 ITQVANVLLCLYAKENVCFGMLRAKAEALATYLEA 202 (211)
Q Consensus 168 i~~Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~ 202 (211)
|..-...|+..+.++.+..|-...+.+.|++||.+
T Consensus 93 i~kT~~aivig~y~e~~~~g~~~~~ve~ladYL~~ 127 (130)
T 3nul_A 93 IKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLIE 127 (130)
T ss_dssp EEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 33334666666677789999999999999999975
No 17
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=89.22 E-value=1.4 Score=33.95 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=64.1
Q ss_pred cCceeeEeecccc-ceeeecCCCCCCchhhHHHHHHH--HHHHHhcCccccccCcceeeEEEecCCe---------EEhh
Q psy6241 102 NGLFSKRLMSYEG-TLLAYSGHKDNDGTVIAAITSNI--WSAFEKNGRSAFKEDSLQMVLMECSNGK---------VAIT 169 (211)
Q Consensus 102 ~gV~s~~L~~~eG-~LlA~a~~~d~da~vvAAIasnI--W~ayer~g~~a~~~d~Lq~llie~e~Gr---------i~i~ 169 (211)
..|..+-+++.|| ++-|++....-.+.=+.+|+... -.....+| +.-..-+++++-.++.. ++|.
T Consensus 15 ~~~~~aAI~g~dG~svwA~s~gf~~~p~E~~~i~~~f~d~~~~~~~G---l~l~G~Ky~vir~d~~~i~~kkg~~Gv~i~ 91 (127)
T 3d9y_A 15 GKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGTG---IILAGQKYITIRAEGRSIYGKLQKEGIICV 91 (127)
T ss_dssp SSCCEEEEEETTSSCEEEECTTCCCCHHHHHHHHHHHHSTTHHHHHC---EEETTEEEEEEEECSSEEEEEETTEEEEEE
T ss_pred CceeeEEEEeCCCCeEEEeCCCCccCHHHHHHHHHHhcCcchhhcCC---EEEcCeEEEEEEeCcceEEEEcCCceEEEE
Confidence 4588888999999 78887765555555555554321 01111222 34455677777776333 3444
Q ss_pred hhhhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241 170 QVANVLLCLYAKENVCFGMLRAKAEALATYLEA 202 (211)
Q Consensus 170 ~Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~ 202 (211)
+....|+..+.++.+..|-...+.+.|++||.+
T Consensus 92 kT~~aivi~~y~e~~~~g~~~~~ve~ladYL~~ 124 (127)
T 3d9y_A 92 ATKLCILVSHYPETTLPGEAAKITEALADYLVG 124 (127)
T ss_dssp ECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred ECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 444666666667789999999999999999975
No 18
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=83.86 E-value=3.8 Score=31.32 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=61.9
Q ss_pred CceeeEeeccccceeeecCCCCCCchhhHHHHHHH--HHHHHhcCccccccCcceeeEEEecCC---------eEEhhhh
Q psy6241 103 GLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNI--WSAFEKNGRSAFKEDSLQMVLMECSNG---------KVAITQV 171 (211)
Q Consensus 103 gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnI--W~ayer~g~~a~~~d~Lq~llie~e~G---------ri~i~~V 171 (211)
.+..+-+++.||++.|++....-.+.=+.+|+.-. -.....+| +.-..-+++.+-.++. -++|.+.
T Consensus 15 ~~~~aAIig~dGsvwA~s~~f~~~~~E~~~i~~~f~~~~~~~~~G---i~l~G~KY~~i~~d~~~i~~kk~~~Gv~i~kT 91 (125)
T 1acf_A 15 AVTQAAILGLDGNTWATSAGFAVTPAQGTTLAGAFNNADAIRAGG---FDLAGVHYVTLRADDRSIYGKKGSSGVITVKT 91 (125)
T ss_dssp SCSEEEEEETTSCEEEECTTCCCCHHHHHHHHHHHHCCHHHHHHC---EEETTEEEEEEEESSSEEEEEETTEEEEEEEC
T ss_pred CcceEEEEcCCCCEEEecCCCccCHHHHHHHHHHhcCcchhhcCC---eEECCEEEEEEEecCcEEEeecCCCeEEEEEC
Confidence 57788899999999998755333343344443311 01222233 3345566666666632 2444444
Q ss_pred hhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241 172 ANVLLCLYAKENVCFGMLRAKAEALATYLEA 202 (211)
Q Consensus 172 a~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~ 202 (211)
...++.-+.++++..|-.....+.|++||.+
T Consensus 92 ~~aivI~~y~~~~~~g~~~~~ve~ladyL~~ 122 (125)
T 1acf_A 92 SKAILVGVYNEKIQPGTAANVVEKLADYLIG 122 (125)
T ss_dssp SSEEEEEEECTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5666666666779999999999999999975
No 19
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=83.72 E-value=6.7 Score=30.16 Aligned_cols=97 Identities=10% Similarity=0.048 Sum_probs=65.8
Q ss_pred ceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeeeccC
Q psy6241 104 LFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKEN 183 (211)
Q Consensus 104 V~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a~~~ 183 (211)
|++++++|..|..+-+--..+-......++...++....... +. ++-+++.++-+++-.+.+++.++++++.+
T Consensus 2 I~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~------~~-~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~ 74 (142)
T 2vgl_S 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRD------AK-HTNFVEFRNFKIIYRRYAGLYFCICVDVN 74 (142)
T ss_dssp EEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCC------TT-SCSEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCC------CC-CCCEEEECCEEEEEEEECCEEEEEEeCCC
Confidence 688999999999888866543334445556677777666321 11 34478888888888888898888888887
Q ss_pred ccccchHHHHHHHHHHhhhhhccc
Q psy6241 184 VCFGMLRAKAEALATYLEAPLKQV 207 (211)
Q Consensus 184 v~~GlLk~K~~aLa~yLe~pL~~i 207 (211)
.+.=++=.=++.+.+-|+.-+..+
T Consensus 75 ~N~l~~le~L~~~ve~l~~yf~~v 98 (142)
T 2vgl_S 75 DNNLAYLEAIHNFVEVLNEYFHNV 98 (142)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHccC
Confidence 776555555555555555544444
No 20
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=83.62 E-value=6.4 Score=30.16 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=62.9
Q ss_pred CceeeEeecccc-ceeeecCCCCCCchhhHHHHHHH--HHHHHhcCccccccCcceeeEEEecCC---------eEEhhh
Q psy6241 103 GLFSKRLMSYEG-TLLAYSGHKDNDGTVIAAITSNI--WSAFEKNGRSAFKEDSLQMVLMECSNG---------KVAITQ 170 (211)
Q Consensus 103 gV~s~~L~~~eG-~LlA~a~~~d~da~vvAAIasnI--W~ayer~g~~a~~~d~Lq~llie~e~G---------ri~i~~ 170 (211)
.|..+-+++.|| ++-|++....-.++=+.+|+... -.....+| +.-..-+++.+-.|+. -+++..
T Consensus 14 ~~~~aAI~g~DG~svwA~s~~f~~~~~E~~~i~~~f~~~~~~~~~G---l~l~G~KY~~i~~d~~~i~~kk~~~Gi~i~k 90 (125)
T 1ypr_A 14 KVDKAVIYSRAGDAVWATSGGLSLQPNEIGEIVQGFDNPAGLQSNG---LHIQGQKFMLLRADDRSIYGRHDAEGVVCVR 90 (125)
T ss_dssp SCSEEEEEETTSCCEEEEESCCCCCHHHHHHHHHHTTCTHHHHHHC---EEETTEEEEEEEECSSEEEEEETTEEEEEEE
T ss_pred CccEEEEEeCCCCcEEEECCCCccCHHHHHHHHHhccCcchhccCC---eEECCEEEEEEecCCcEEEEecCCceEEEEE
Confidence 678888999999 99998754443444445554311 12223333 3345566777776632 233444
Q ss_pred hhhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241 171 VANVLLCLYAKENVCFGMLRAKAEALATYLEA 202 (211)
Q Consensus 171 Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~ 202 (211)
-...++.-+.++.+..|-.....+.|++||.+
T Consensus 91 T~~aivI~~y~e~~~~g~~~~~ve~ladYL~~ 122 (125)
T 1ypr_A 91 TKQTVIIAHYPPTVQAGEATKIVEQLADYLIG 122 (125)
T ss_dssp CSSEEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44666666666789999999999999999975
No 21
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=83.28 E-value=9 Score=30.20 Aligned_cols=97 Identities=11% Similarity=0.026 Sum_probs=65.9
Q ss_pred ceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeeeccC
Q psy6241 104 LFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKEN 183 (211)
Q Consensus 104 V~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a~~~ 183 (211)
|++++++|..|..+-+--..+...+--..+...+|+...+... -++=+++.++-+++-.+.+++.++++++.+
T Consensus 2 I~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~ 74 (158)
T 1w63_Q 2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKP-------KMCSFLEWRDLKVVYKRYASLYFCCAIEGQ 74 (158)
T ss_dssp EEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCS-------SSCSEEEETTEEEEEEEETTEEEEEEECSS
T ss_pred eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCC-------CCCCeEEECCEEEEEEEECCEEEEEEecCC
Confidence 6889999999998887666544444344566777877655321 123477888888888888898899988887
Q ss_pred ccccchHHHHHHHHHHhhhhhccc
Q psy6241 184 VCFGMLRAKAEALATYLEAPLKQV 207 (211)
Q Consensus 184 v~~GlLk~K~~aLa~yLe~pL~~i 207 (211)
.+.=++=.=++.+.+-|+.-+..+
T Consensus 75 ~Nel~~le~L~~~vevl~~yf~~v 98 (158)
T 1w63_Q 75 DNELITLELIHRYVELLDKYFGSV 98 (158)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHccC
Confidence 776555555555555555544443
No 22
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=82.28 E-value=6.6 Score=31.15 Aligned_cols=96 Identities=16% Similarity=0.081 Sum_probs=67.5
Q ss_pred cCceeeEeeccccceeeecCCCCC--CchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeee
Q psy6241 102 NGLFSKRLMSYEGTLLAYSGHKDN--DGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLY 179 (211)
Q Consensus 102 ~gV~s~~L~~~eG~LlA~a~~~d~--da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~ 179 (211)
--|+++++++..|..+-+--..++ ..+--.++-..+|+...|. + .-+++.++-+++-.+.+++-++++
T Consensus 11 ~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~-------~---~~i~~~~~~~~vy~~~~~Lyfv~~ 80 (153)
T 3tjz_C 11 YTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRT-------D---SEIALLEGLTVVYKSSIDLYFYVI 80 (153)
T ss_dssp BCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSC-------C---CCEEEETTEEEEEEECSSCEEEEE
T ss_pred HHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-------C---CCEEEECCEEEEEEEECCEEEEEE
Confidence 358999999999998887665432 2233466777888886442 1 125677788888888889999999
Q ss_pred eccCccccchHHHHHHHHHHhhhhh-ccc
Q psy6241 180 AKENVCFGMLRAKAEALATYLEAPL-KQV 207 (211)
Q Consensus 180 a~~~v~~GlLk~K~~aLa~yLe~pL-~~i 207 (211)
++.+.+.-++=.=++.+.+-|+.-+ ..+
T Consensus 81 ~~~~eNel~ile~L~~~ve~l~~yf~~~v 109 (153)
T 3tjz_C 81 GSSYENELMLMTVLNCLFDSLSQMLRKNV 109 (153)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred EcCCCChHHHHHHHHHHHHHHHHHhcCCC
Confidence 9888776666666666666666665 443
No 23
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=79.06 E-value=5.5 Score=31.32 Aligned_cols=98 Identities=21% Similarity=0.198 Sum_probs=62.9
Q ss_pred cCceeeEeecccc--ceeeecCC--C-CCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEe----cCCe-------
Q psy6241 102 NGLFSKRLMSYEG--TLLAYSGH--K-DNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMEC----SNGK------- 165 (211)
Q Consensus 102 ~gV~s~~L~~~eG--~LlA~a~~--~-d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~----e~Gr------- 165 (211)
..|..+-+++.|| ++-|++.. . .-.++=+.+|+++-......+|. .-..-++++|.. +.++
T Consensus 15 g~v~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~~~d~~~~~~~Gl---~l~G~Ky~~ir~~l~~d~~~~~di~~k 91 (140)
T 2v8f_A 15 GCCQEAAIVGYCDAKYVWAATAGGVFQSITPVEIDMIVGKDREGFFTNGL---TLGAKKCSVIRDSLYVDGDCTMDIRTK 91 (140)
T ss_dssp SCEEEEEEEECSSSCSEEEECTTSSGGGCCHHHHHHHHSSCSSHHHHHCE---EETTEEEEEEEEETTSTTTCEEEEEEC
T ss_pred CCcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHHcCCccccccCCe---EECCEEEEEEecccccCCCceEEEEEe
Confidence 3688899999999 89998654 2 33333344454211123333332 334556666666 4233
Q ss_pred ---------EEhhhhhhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241 166 ---------VAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEA 202 (211)
Q Consensus 166 ---------i~i~~Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~ 202 (211)
++|..-...|+..+.++.+..|-.....+.|++||.+
T Consensus 92 k~~~G~~~~v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~ 137 (140)
T 2v8f_A 92 SQGGEPTYNVAVGRAGRVLVFVMGKEGVHGGGLNKKAYSMAKYLRD 137 (140)
T ss_dssp CCSSSCCCEEEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCceeEEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4444445666666677789999999999999999975
No 24
>3kye_A Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces avermitilis}
Probab=76.30 E-value=1.5 Score=35.46 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=53.9
Q ss_pred hHHHHhhhh--ccCCcceeeEeeecCceeeec-CCCCCCchhhhHhhhhhhhhhhhccccccc-cchhhhhhhhhh
Q psy6241 10 VLSQVLGQA--NTEGVQSTMLMSYEGTLLAYS-GHKDNDGTVIAAITSNIWSAFEKNGRSAFK-EDSLQMVLMECS 81 (211)
Q Consensus 10 vL~q~~g~~--~t~~~~~~~Ll~~~G~lla~~-~~~~~~a~v~aAIasNiW~ay~~~g~~a~~-~d~l~~~l~~c~ 81 (211)
=|..++..- .+.+++..+++..+|- ++.+ +....++.-.||++|-+.+.=++-++. |. ...++.++++++
T Consensus 26 ~l~wlL~~L~~~vpGV~~AvvvS~DGL-la~S~~l~~~dae~LAA~aSgl~SLa~~aa~~-~~~~G~vrqv~VE~~ 99 (150)
T 3kye_A 26 DLDWLMSGLVQRVPHTTSAVLLSCDGL-VKSVHGLDPDSADHMAALASGLYSLGRSAGIR-FGDGGDVRQVVVELD 99 (150)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEETTSC-EEEEESSCHHHHHHHHHHHHHHHHHHHHHHHH-HSSSSCCCEEEEEES
T ss_pred cHHHHHHHHHhcCCCeeEEEEEcCCCC-EeecCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hccCCCeEEEEEEeC
Confidence 356666443 4689999999999997 7664 333358899999999999988888765 56 677888888877
No 25
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=71.22 E-value=8.2 Score=30.18 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=61.0
Q ss_pred cCceeeEeecccc--ceeeecCC--C-CCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEe----cCCe-------
Q psy6241 102 NGLFSKRLMSYEG--TLLAYSGH--K-DNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMEC----SNGK------- 165 (211)
Q Consensus 102 ~gV~s~~L~~~eG--~LlA~a~~--~-d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~----e~Gr------- 165 (211)
..|..+-+++.|| ++-|++.. . .-.+.=+.+|++.-...+..+| +.-..-+++++.. +.++
T Consensus 14 g~~~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~~~d~~~~~~~G---l~lgG~Ky~~ir~~~~~d~~~~id~~~k 90 (139)
T 2pbd_P 14 GTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFYVNG---LTLGGQKCSVIRDSLLQDGEFSMDLRTK 90 (139)
T ss_dssp SCEEEEEEEESSSSCEEEEECTTSSGGGCCHHHHHHHHSSCCSTHHHHC---EEETTEEEEEEEEETTCTTTCEEEEEEC
T ss_pred CCcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHHccCcccccccC---eEECCEEEEEEecccccCCCcEEeeeec
Confidence 4688899999999 89998654 2 3333334455421111122222 2334556666665 4232
Q ss_pred ---------EEhhhhhhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241 166 ---------VAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEA 202 (211)
Q Consensus 166 ---------i~i~~Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~ 202 (211)
++|.+-...|+..+.++.+..|-.....+.|++||.+
T Consensus 91 k~~~G~~~~v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~ 136 (139)
T 2pbd_P 91 STGGAPTFNVTVTKTDKTLVLLMGKEGVHGGLINKKCYEMASHLRR 136 (139)
T ss_dssp CSTTCCCCEEEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4444444666666667789999999999999999975
No 26
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=67.91 E-value=1.3 Score=30.74 Aligned_cols=38 Identities=16% Similarity=0.426 Sum_probs=33.1
Q ss_pred CCcceeeEeeecCceeeecCCCCCCchhhhHhhhhhhhhhhhc
Q psy6241 21 EGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKN 63 (211)
Q Consensus 21 ~~~~~~~Ll~~~G~lla~~~~~~~~a~v~aAIasNiW~ay~~~ 63 (211)
.++.|.-.+..+|..|-|..+ +|-|++++|+|..+-+.
T Consensus 5 ~gIeEVnmfk~dg~vihF~nP-----kVqaS~~aNTfvv~G~~ 42 (58)
T 3mcb_B 5 SGIEEVNMFTNQGTVIHFNNP-----KVQASLAANTFTITGHA 42 (58)
T ss_dssp CCCCEEEEEETTSEEEEEESC-----EEEEETTTTEEEEESCE
T ss_pred CCeeEEEEEecCCEEEEecCc-----ceEEeeccceEEEecCC
Confidence 678898899999999999876 88999999999987653
No 27
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=58.60 E-value=1.7 Score=30.79 Aligned_cols=38 Identities=16% Similarity=0.426 Sum_probs=32.1
Q ss_pred CCcceeeEeeecCceeeecCCCCCCchhhhHhhhhhhhhhhhc
Q psy6241 21 EGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKN 63 (211)
Q Consensus 21 ~~~~~~~Ll~~~G~lla~~~~~~~~a~v~aAIasNiW~ay~~~ 63 (211)
.++.|.-.+..+|+.+-|..+ +|-|++++|+|..|-+.
T Consensus 5 ~gIeEVnmfk~dg~vihF~nP-----kVqaS~~aNT~vv~G~~ 42 (66)
T 3lkx_A 5 SGIEEVNMFTNQGTVIHFNNP-----KVQASLAANTFTITGHA 42 (66)
T ss_dssp CCEEEEEEEETTSEEEEEESC-----EEEEECC-CEEEEESCE
T ss_pred CCeeEEEEEecCCEEEEecCc-----ceEEeeccCeeEecCCC
Confidence 678888899999999999876 88999999999997654
No 28
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=50.44 E-value=49 Score=26.70 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=58.2
Q ss_pred ccCceeeEeec-cccceeeecCCCC-------------------------CCchhhHHHHHHHHHHHHhcCc--cccccC
Q psy6241 101 SNGLFSKRLMS-YEGTLLAYSGHKD-------------------------NDGTVIAAITSNIWSAFEKNGR--SAFKED 152 (211)
Q Consensus 101 ~~gV~s~~L~~-~eG~LlA~a~~~d-------------------------~da~vvAAIasnIW~ayer~g~--~a~~~d 152 (211)
++.|..+-+++ .||++=|.+...+ ..+.=+.+|.. .++. +. +-+.-.
T Consensus 18 ~g~v~~AAI~g~~DG~vWA~s~~~~~~w~~~~~~~y~~~v~~~~g~~~~~~~~~E~~~i~~----~f~~-~~~~~Gl~lg 92 (166)
T 3nec_A 18 TGYCCAGGIANAEDGVVFAAAADDDDGWSKLYKDDHEEDTIGEDGNACGKVSINEASTIKA----AVDD-GSAPNGVWIG 92 (166)
T ss_dssp TSSCSEEEEEETTTCCEEEEEETTSCHHHHHCCCCEEEEEECTTSCEEEEEEECHHHHHHH----HHHH-SCCTTCEEET
T ss_pred cCceeEEEEEecCCCCEEeecCCCCcccccccccccccccccccccccccCCHHHHHHHHH----Hhhc-CCccCCeEEe
Confidence 35688899999 8999988776430 01222334422 2222 22 123334
Q ss_pred cceeeEEEecCC------------------eEEhhhhhh-heeeeeeccC--ccccchHHHHHHHHHHhhh
Q psy6241 153 SLQMVLMECSNG------------------KVAITQVAN-VLLCLYAKEN--VCFGMLRAKAEALATYLEA 202 (211)
Q Consensus 153 ~Lq~llie~e~G------------------ri~i~~Va~-lLLcl~a~~~--v~~GlLk~K~~aLa~yLe~ 202 (211)
.-+++++-.+++ -++|..... .|+..+-++. +..|-.+...+.|++||.+
T Consensus 93 G~KY~~ir~d~~~~~~~~~~~~i~~kK~~~Gv~i~KT~~~aiVI~~y~e~~~~~~g~~~~~ve~ladYL~~ 163 (166)
T 3nec_A 93 GQKYKVVRPEKGFEYNDCTFDITMCARSKGGAHLIKTPNGSIVIALYDEEKEQDKGNSRTSALAFAEYLHQ 163 (166)
T ss_dssp TEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEECTTSEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEecCCccccccceeEEEeccCCceEEEEEeCCCEEEEEEccCCCccCHHHHHHHHHHHHHHHHH
Confidence 556666665543 244444455 4444444445 8999999999999999975
No 29
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=46.80 E-value=69 Score=28.85 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=61.3
Q ss_pred ceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeeeccC
Q psy6241 104 LFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKEN 183 (211)
Q Consensus 104 V~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a~~~ 183 (211)
|+++++++..|..+-+--..++..+.. ...+.+.-.. ..+.-+.=+++.++-+++-.+.+++.++++++.+
T Consensus 2 I~~i~I~~~~Gk~~l~k~y~~~~~~~~-------~~~f~~~v~~--~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~ 72 (435)
T 2vgl_M 2 IGGLFIYNHKGEVLISRVYRDDIGRNA-------VDAFRVNVIH--ARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQN 72 (435)
T ss_dssp CCEEEEECTTCCEEEEEECSSSCCHHH-------HHHHHHHTTT--CSSCCCCSEEEETTEEEEEEEETTEEEEEEESSC
T ss_pred eEEEEEECCCCCEEEEEecCCCCChhH-------HHHHHHHHhc--cccCCCCCEEEECCEEEEEEEECCEEEEEEecCC
Confidence 678999999999888866543333321 2334332221 1111244577888888888888898888888887
Q ss_pred ccccchHHHHHHHHHHhhhhhccc
Q psy6241 184 VCFGMLRAKAEALATYLEAPLKQV 207 (211)
Q Consensus 184 v~~GlLk~K~~aLa~yLe~pL~~i 207 (211)
.+.=++=.=++.+.+-|+.-+..+
T Consensus 73 ~n~l~~le~L~~~v~vl~~yf~~v 96 (435)
T 2vgl_M 73 VNAAMVFEFLYKMCDVMAAYFGKI 96 (435)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcc
Confidence 776555555566666666555544
No 30
>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A*
Probab=45.56 E-value=6.3 Score=30.81 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=33.2
Q ss_pred hhhhhhhhccccccccchhhhhhhhhhhhhhhhhhhhcCCCC
Q psy6241 55 NIWSAFEKNGRSAFKEDSLQMVLMECSVSFLSDILALEGPQE 96 (211)
Q Consensus 55 NiW~ay~~~g~~a~~~d~l~~~l~~c~~~~~~~~~~~~~~~~ 96 (211)
.=|.||.+.|+. ....++++|....++-||.-+.|.+
T Consensus 84 hRleA~k~LG~~-----tI~A~vv~~t~~~l~~ylg~s~~~~ 120 (121)
T 1yzs_A 84 HRYAAYQQLQRE-----TIPAKLVQSTLSDLRVYLGASTPDL 120 (121)
T ss_dssp HHHHHHHHTTCS-----EEEEEEEECCHHHHHHHHTTTCCCC
T ss_pred hHHHHHHHcCcC-----cccEEEEcCCHHHHHHHhccCCccc
Confidence 458999999975 8999999999999999999999875
No 31
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=37.74 E-value=1.5e+02 Score=26.56 Aligned_cols=96 Identities=8% Similarity=0.151 Sum_probs=59.3
Q ss_pred ceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeeeccC
Q psy6241 104 LFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKEN 183 (211)
Q Consensus 104 V~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a~~~ 183 (211)
|++++++|..|..+-+--..++..+.+ ....+......-. +.-++-+++.++-+++-.+.+++.++++++.+
T Consensus 3 I~~i~I~~~~Gk~~l~k~y~~~~~~~~---~~~f~~~v~~~~~-----~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~ 74 (423)
T 1w63_M 3 ASAVYVLDLKGKVLICRNYRGDVDMSE---VEHFMPILMEKEE-----EGMLSPILAHGGVRFMWIKHNNLYLVATSKKN 74 (423)
T ss_dssp CCEEEEEETTTEECSCBCCSCSCTTTT---HHHHHHHHHHHHH-----TSCCCSEEEETTEEEEEEEETTEEEEEEESSC
T ss_pred eEEEEEECCCCCEEEEEecCCCCChHH---HHHHHHHHhhccc-----cCCCCCEEEECCEEEEEEEECCEEEEEEecCC
Confidence 688999999999888765543333321 1223333221100 01123477888888888888898888888887
Q ss_pred ccccchHHHHHHHHHHhhhhhccc
Q psy6241 184 VCFGMLRAKAEALATYLEAPLKQV 207 (211)
Q Consensus 184 v~~GlLk~K~~aLa~yLe~pL~~i 207 (211)
.+.=++=.=++.+.+-|+.-+..+
T Consensus 75 ~n~l~~le~L~~~v~~l~~yf~~v 98 (423)
T 1w63_M 75 ACVSLVFSFLYKVVQVFSEYFKEL 98 (423)
T ss_dssp CCTHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhc
Confidence 766555555566666666555444
No 32
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=32.76 E-value=46 Score=24.20 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=21.4
Q ss_pred cCce---eeEeeccccceeeecCCCCCCchhhHHH
Q psy6241 102 NGLF---SKRLMSYEGTLLAYSGHKDNDGTVIAAI 133 (211)
Q Consensus 102 ~gV~---s~~L~~~eG~LlA~a~~~d~da~vvAAI 133 (211)
.++. +.+|++++|.++..-........+...|
T Consensus 129 ~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i 163 (170)
T 2p5q_A 129 DDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDI 163 (170)
T ss_dssp SCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHH
T ss_pred CcccccccEEEECCCCCEEEeeCCCCCHHHHHHHH
Confidence 5677 8999999999998754322333444444
No 33
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*
Probab=27.26 E-value=19 Score=27.48 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=32.6
Q ss_pred hhhhhhhhccccccccchhhhhhhhhhhhhhhhhhhhcCCCC
Q psy6241 55 NIWSAFEKNGRSAFKEDSLQMVLMECSVSFLSDILALEGPQE 96 (211)
Q Consensus 55 NiW~ay~~~g~~a~~~d~l~~~l~~c~~~~~~~~~~~~~~~~ 96 (211)
.=|.||.+-|+. +...++.+|....++-||.-+.|.+
T Consensus 73 hRl~A~k~Lg~~-----tIpA~V~~~~~~~l~~ylg~s~~~~ 109 (110)
T 1xw3_A 73 HRYAAYQQLQRE-----TIPAKLVQSTLSDLRVYLGASTPDL 109 (110)
T ss_dssp HHHHHHHHTTCS-----EEEEEEEEECHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHcCCC-----cCCEEEEcCCHHHHHHHhCcCCccc
Confidence 348899999875 8999999999999999999999975
No 34
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=25.98 E-value=91 Score=23.12 Aligned_cols=43 Identities=21% Similarity=0.092 Sum_probs=27.6
Q ss_pred ccCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHh
Q psy6241 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEK 143 (211)
Q Consensus 101 ~~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer 143 (211)
..|+.+.++++++|.++....-...+.+-.....-.+-..|++
T Consensus 128 v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~~~~ 170 (172)
T 3f9u_A 128 ANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLENYRK 170 (172)
T ss_dssp CCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHHhhc
Confidence 4689999999999999986542223244433333555566655
No 35
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=22.77 E-value=78 Score=23.48 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=18.6
Q ss_pred eeEeeccccceeeecCCCCCCchhhHHH
Q psy6241 106 SKRLMSYEGTLLAYSGHKDNDGTVIAAI 133 (211)
Q Consensus 106 s~~L~~~eG~LlA~a~~~d~da~vvAAI 133 (211)
+.+|++++|.++..-........+...|
T Consensus 136 ~~~lid~~G~i~~~~~g~~~~~~l~~~i 163 (171)
T 3cmi_A 136 EKFLVDKKGKVYERYSSLTKPSSLSETI 163 (171)
T ss_dssp CEEEECSSSCEEEEECTTSCGGGGHHHH
T ss_pred eEEEECCCCCEEEEeCCCCCHHHHHHHH
Confidence 8999999999998754222333444444
No 36
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=21.18 E-value=70 Score=24.38 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=13.9
Q ss_pred eeEeeccccceeeecC
Q psy6241 106 SKRLMSYEGTLLAYSG 121 (211)
Q Consensus 106 s~~L~~~eG~LlA~a~ 121 (211)
+.+|++++|.++..-.
T Consensus 153 ~~~lid~~G~i~~~~~ 168 (190)
T 2vup_A 153 TSFLIDRDGVPVERFS 168 (190)
T ss_dssp CEEEECTTSCEEEEEC
T ss_pred eEEEECCCCcEEEEEC
Confidence 7899999999998754
No 37
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=20.02 E-value=90 Score=23.25 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=21.1
Q ss_pred CceeeEeeccccceeeecC-CCC-CCchhhHHH
Q psy6241 103 GLFSKRLMSYEGTLLAYSG-HKD-NDGTVIAAI 133 (211)
Q Consensus 103 gV~s~~L~~~eG~LlA~a~-~~d-~da~vvAAI 133 (211)
++.+.+|++++|.++..-. ..+ ...++...|
T Consensus 143 ~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l 175 (186)
T 1jfu_A 143 GMPTSVLVDPQGCEIATIAGPAEWASEDALKLI 175 (186)
T ss_dssp SSSEEEEECTTSBEEEEEESCCCTTSHHHHHHH
T ss_pred CCCEEEEECCCCCEEEEEecCCccCHHHHHHHH
Confidence 7899999999999987543 222 234455444
Done!