RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6241
(211 letters)
>gnl|CDD|214939 smart00960, Robl_LC7, Roadblock/LC7 domain. This family includes
proteins that are about 100 amino acids long and have
been shown to be related. Members of this family of
proteins are associated with both flagellar outer arm
dynein and Drosophila and rat brain cytoplasmic dynein.
It is proposed that roadblock/LC7 family members may
modulate specific dynein functions. This family also
includes Golgi-associated MP1 adapter protein and MglB
from Myxococcus xanthus, a protein involved in gliding
motility. However the family also includes members from
non-motile bacteria such as Streptomyces coelicolor,
suggesting that the protein may play a structural or
regulatory role.
Length = 88
Score = 47.6 bits (114), Expect = 1e-07
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 109 LMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAI 168
++S +G LLA SG D+D +AA+ + + S E+ R E L+ + +E G+V I
Sbjct: 19 VVSRDGLLLASSGLSDDDAERLAALAAGLLSLAERAAR-ELGEGELRQLRIEGEKGEVLI 77
Query: 169 TQVANVLLCL 178
T + LL +
Sbjct: 78 TPAGDALLAV 87
Score = 43.7 bits (104), Expect = 2e-06
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 17 QANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMV 76
A GV+ +++S +G LLA SG D+D +AA+ + + S E+ R E L+ +
Sbjct: 8 LARVPGVRGALVVSRDGLLLASSGLSDDDAERLAALAAGLLSLAERAAR-ELGEGELRQL 66
Query: 77 LMEC 80
+E
Sbjct: 67 RIEG 70
>gnl|CDD|217460 pfam03259, Robl_LC7, Roadblock/LC7 domain. This family includes
proteins that are about 100 amino acids long and have
been shown to be related. Members of this family of
proteins are associated with both flagellar outer arm
dynein and Drosophila and rat brain cytoplasmic dynein.
It is proposed that roadblock/LC7 family members may
modulate specific dynein functions. This family also
includes Golgi-associated MP1 adapter protein and MglB
from Myxococcus xanthus, a protein involved in gliding
motility. However the family also includes members from
non-motile bacteria such as Streptomyces coelicolor,
suggesting that the protein may play a structural or
regulatory role.
Length = 91
Score = 43.0 bits (102), Expect = 5e-06
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 109 LMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAI 168
++S +G +LA +G D+D +AA+ S + SA + R L+ +L+E G++ +
Sbjct: 20 VVSKDGLVLASTGLDDDDADRLAALASGLLSAAKALAR-DLGGGELRQLLIEGKKGELYL 78
Query: 169 TQVAN-VLLCLYA 180
T LL + A
Sbjct: 79 TPAGEGALLVVLA 91
Score = 42.2 bits (100), Expect = 1e-05
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 17 QANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMV 76
GV+ +++S +G +LA +G D+D +AA+ S + SA + R L+ +
Sbjct: 9 LQRVPGVRGALVVSKDGLVLASTGLDDDDADRLAALASGLLSAAKALAR-DLGGGELRQL 67
Query: 77 LMEC 80
L+E
Sbjct: 68 LIEG 71
>gnl|CDD|177598 PHA03360, PHA03360, tegument protein; Provisional.
Length = 442
Score = 28.7 bits (64), Expect = 2.2
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 124 DNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKV 166
D +I AI + F+ G+S +D + L++CS G V
Sbjct: 326 TLDSCIIKAIICFL--GFKNGGKSFLAQDEVWGDLIDCSKGSV 366
>gnl|CDD|239545 cd03462, 1,2-CCD, chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type
II enzymes) are homodimeric intradiol dioxygenases that
degrade chlorocatechols via the addition of molecular
oxygen and the subsequent cleavage between two adjacent
hydroxyl groups. This reaction is part of the modified
ortho-cleavage pathway which is a central oxidative
bacterial pathway that channels chlorocatechols, derived
from the degradation of chlorinated benzoic acids,
phenoxyacetic acids, phenols, benzenes, and other
aromatics into the energy-generating tricarboxylic acid
pathway.
Length = 247
Score = 28.5 bits (64), Expect = 2.4
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 90 ALEGP---QESPLLSNGLFSKRLMSYEGTLLAYSGH-KDNDGTVIAAITSNIWSA 140
A+EGP + +P + L K + L + G KD G +A ++W +
Sbjct: 72 AIEGPYFIENAPFVDGKL--KTYDDDDHKPLLFRGTVKDLAGAPVAGAVIDVWHS 124
>gnl|CDD|132434 TIGR03393, indolpyr_decarb, indolepyruvate decarboxylase, Erwinia
family. A family of closely related, thiamine
pyrophosphate-dependent enzymes includes indolepyruvate
decarboxylase (EC 4.1.1.74), phenylpyruvate
decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC
4.1.1.1), branched-chain alpha-ketoacid decarboxylase,
etc.. Members of this group of homologs may overlap in
specificity. Within the larger family, this model
represents a clade of bacterial indolepyruvate
decarboxylases, part of a pathway for biosynthesis of
the plant hormone indole-3-acetic acid. Typically, these
species interact with plants, as pathogens or as
beneficial, root-associated bacteria [Central
intermediary metabolism, Other].
Length = 539
Score = 27.2 bits (60), Expect = 7.3
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 19/82 (23%)
Query: 67 AFKEDSLQMVLMECSVSFLSDILALEG---------------PQESPLLSNGLFSKRLMS 111
AF++ + + M VS L+D LAL P + L+ G+ ++
Sbjct: 193 AFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPHATLLMGKGILDEQQAG 252
Query: 112 YEGTLLAYSGHKDNDGTVIAAI 133
+ GT YSG G V AI
Sbjct: 253 FYGT---YSGSAST-GAVKEAI 270
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.129 0.359
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,048,289
Number of extensions: 896314
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 9
Length of query: 211
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 118
Effective length of database: 6,812,680
Effective search space: 803896240
Effective search space used: 803896240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)