RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6241
(211 letters)
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin,
scaffold, adaptor, signaling protein/protein binding
complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB:
2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Length = 125
Score = 122 bits (307), Expect = 4e-36
Identities = 66/114 (57%), Positives = 86/114 (75%)
Query: 97 SPLLSNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQM 156
S + G+ S L++ EG+LLAYSG+ D D V AAI SNIW+A+++NG AF EDSL+
Sbjct: 12 SQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKF 71
Query: 157 VLMECSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVNT 210
+LM+C G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL YLE PL QV +
Sbjct: 72 ILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS 125
Score = 97.1 bits (241), Expect = 3e-26
Identities = 48/77 (62%), Positives = 62/77 (80%)
Query: 5 MLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNG 64
ML+PK L+QVL QANT GVQST+L++ EG+LLAYSG+ D D V AAI SNIW+A+++NG
Sbjct: 1 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG 60
Query: 65 RSAFKEDSLQMVLMECS 81
AF EDSL+ +LM+C
Sbjct: 61 NQAFNEDSLKFILMDCM 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 6e-05
Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 61/232 (26%)
Query: 8 PKVLSQVLGQANTEGV-QSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRS 66
P L+ G + + ++ M +E + + + TS + +
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS------- 1721
Query: 67 AFKEDSL------QMVLMECSVSFLSDILALEG--PQ----------E-SPLLSN-GLFS 106
++ L Q L + D+ + +G P E + L S + S
Sbjct: 1722 --EKGLLSATQFTQPALTLMEKAAFEDLKS-KGLIPADATFAGHSLGEYAALASLADVMS 1778
Query: 107 ----KRLMSYEGTLLAYSGHKDNDGTV---IAAITSNIWSAFEKNGRSAFKEDSLQMVLM 159
++ Y G + + +D G + AI +A +F +++LQ V+
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA-------SFSQEALQYVVE 1831
Query: 160 ECSNGKVAITQVANVLLCLYAKEN------VCFGMLRAKAEALATYLEAPLK 205
+ ++ N Y N V G LRA + + L +K
Sbjct: 1832 RVGKRTGWLVEIVN-----Y---NVENQQYVAAGDLRA-LDTVTNVLNF-IK 1873
Score = 41.6 bits (97), Expect = 1e-04
Identities = 38/169 (22%), Positives = 58/169 (34%), Gaps = 53/169 (31%)
Query: 4 PMLKPKVLSQVLGQ----ANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAI--TSNIW 57
P++ + Q L A G L SY L +GH + G V A ++ W
Sbjct: 239 PLI---GVIQ-LAHYVVTAKLLGFTPGELRSY---LKGATGH--SQGLVTAVAIAETDSW 289
Query: 58 SAFEKNGRSAFKEDSLQMVL----MEC---------SVSFLSDILAL-EG-PQESPLLS- 101
+F + R A VL + C S L D L EG P SP+LS
Sbjct: 290 ESFFVSVRKAIT------VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP--SPMLSI 341
Query: 102 NGLFSKRLMSYEGTLLAYSGHKDNDGTV-IAAITSNIWSAFEKNGRSAF 149
+ L +++ + + + H V I+ + NG
Sbjct: 342 SNLTQEQV---QDYVNKTNSHLPAGKQVEISLV----------NGAKNL 377
Score = 38.9 bits (90), Expect = 0.001
Identities = 31/167 (18%), Positives = 52/167 (31%), Gaps = 59/167 (35%)
Query: 16 GQANTEG----VQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKED 71
GQ NT+ ++ Y+ Y + + + R+ +
Sbjct: 162 GQGNTDDYFEELRDL----YQ----TYHVL-------VGDLIKFSAETLSELIRTTLDAE 206
Query: 72 SLQMVLMECSVSFLSDILA-LEGPQESP----LLS-------NGLFSKRLMSYE------ 113
+ + +IL LE P +P LLS G+ L Y
Sbjct: 207 KV------FTQGL--NILEWLENPSNTPDKDYLLSIPISCPLIGVIQ--LAHYVVTAKLL 256
Query: 114 ----GTLLAY----SGHKDNDGTVIAAI--TSNIWSAFEKNGRSAFK 150
G L +Y +GH + G V A ++ W +F + R A
Sbjct: 257 GFTPGELRSYLKGATGH--SQGLVTAVAIAETDSWESFFVSVRKAIT 301
Score = 30.0 bits (67), Expect = 0.74
Identities = 30/129 (23%), Positives = 40/129 (31%), Gaps = 61/129 (47%)
Query: 6 LKPKVLSQVLGQANTEGVQSTML----MSYEGTLLAY----SGHKDNDGTV-IAAITSNI 56
L P +L L N EGV S ML ++ E + Y + H V I+ +
Sbjct: 319 LPPSILEDSL--ENNEGVPSPMLSISNLTQE-QVQDYVNKTNSHLPAGKQVEISLV---- 371
Query: 57 WSAFEKNGRSAFKEDSLQMVLMECSVSFLSDILALEGPQESPL--LSNGL---------- 104
NG V VS GP +S L L+ L
Sbjct: 372 ------NGAKNL-------V-----VS---------GPPQS-LYGLNLTLRKAKAPSGLD 403
Query: 105 -----FSKR 108
FS+R
Sbjct: 404 QSRIPFSER 412
>3kye_A Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha sandwich,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.15A {Streptomyces avermitilis}
Length = 150
Score = 36.5 bits (84), Expect = 0.002
Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 11 LSQVLGQ--ANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAF 68
L ++ S +L+S +G + + G + +AA+ S ++S G
Sbjct: 27 LDWLMSGLVQRVPHTTSAVLLSCDGLVKSVHGLDPDSADHMAALASGLYSLGRSAGIRFG 86
Query: 69 KEDSLQMVLMECSVSFL 85
++ V++E + L
Sbjct: 87 DGGDVRQVVVELDSTLL 103
>1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase,
RHO transglutaminase, toxin; 1.83A {Escherichia coli}
SCOP: d.194.1.1 PDB: 1hzg_A
Length = 295
Score = 32.6 bits (73), Expect = 0.068
Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 4/162 (2%)
Query: 9 KVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAF 68
++ G++ + EG + + + T I A G +
Sbjct: 110 SIIRVSNSARGANGIKIALEEVQEGKPVIITSGNLSGCTTIVARKEGYIYKVH-TGTTKS 168
Query: 69 KEDSLQMVLMECSVSFLSDILALEGPQESPLLSN-GLFSKRLMSYEGTLLAYSGHKDNDG 127
++ +V L + P+ ++SN L ++E +L+ YS +
Sbjct: 169 LAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSNDFLVDYLSENFEDSLITYSSSEKKPD 228
Query: 128 TVIAAITSNIWSAFE-KNGRSAFKEDSLQMVLMECSNGKVAI 168
+ I I N+ S F ++ +G V +
Sbjct: 229 SQITIIRDNV-SVFPYFLDNIPEHGFGTSATVLVRVDGNVVV 269
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.61
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 17/41 (41%)
Query: 61 EKNGRSAFKEDSLQMVLMECSVSFLSDILALEGPQESPLLS 101
EK A K+ ++ S L L +P L+
Sbjct: 18 EKQ---ALKK-------LQAS-------LKLYADDSAPALA 41
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 193
Score = 27.2 bits (60), Expect = 3.1
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 72 SLQMVLMECSVSFLSDIL 89
SL+MV ++C V F+SDIL
Sbjct: 151 SLEMVQLDCDVWFVSDIL 168
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG;
1.73A {Fusarium moniliforme} SCOP: b.80.1.3
Length = 349
Score = 26.3 bits (58), Expect = 8.4
Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 21/105 (20%)
Query: 79 ECSVSFLSDILALEGPQESPLLSNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNI- 137
C L+ P L + L + ++++GT + DND I SNI
Sbjct: 17 SCKNIVLNGFQV---PTGKQLDLSSLQNDSTVTFKGTTTFATT-ADNDFNPIVISGSNIT 72
Query: 138 ----------------WSAFEKNGRSAFKEDSLQMVLMECSNGKV 166
W N S K D +V N K+
Sbjct: 73 ITGASGHVIDGNGQAYWDGKGSNSNSNQKPDHFIVVQKTTGNSKI 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.129 0.359
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,917,418
Number of extensions: 159231
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 11
Length of query: 211
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 122
Effective length of database: 4,216,824
Effective search space: 514452528
Effective search space used: 514452528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)