RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6241
         (211 letters)



>d1vetb_ d.110.7.1 (B:) Late endosomal/lysosomal Mp1 interacting
           protein p14 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 118

 Score = 84.9 bits (210), Expect = 5e-22
 Identities = 60/95 (63%), Positives = 77/95 (81%)

Query: 109 LMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAI 168
           L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF EDSL+ +LM+C  G+VAI
Sbjct: 24  LLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAI 83

Query: 169 TQVANVLLCLYAKENVCFGMLRAKAEALATYLEAP 203
           T+VAN+LLC+YAKE V FGML+AKA+AL  YLE P
Sbjct: 84  TRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEP 118



 Score = 79.1 bits (195), Expect = 8e-20
 Identities = 48/76 (63%), Positives = 62/76 (81%)

Query: 5  MLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNG 64
          ML+PK L+QVL QANT GVQST+L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG
Sbjct: 1  MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG 60

Query: 65 RSAFKEDSLQMVLMEC 80
            AF EDSL+ +LM+C
Sbjct: 61 NQAFNEDSLKFILMDC 76


>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida
           [TaxId: 303]}
          Length = 340

 Score = 28.5 bits (63), Expect = 0.51
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 138 WSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANV 174
           W AF+K+ R A   +   + LM  ++      +  N 
Sbjct: 36  WQAFDKSARVASHSEVGVIELMPVADKSRYAFKYVNG 72


>d1j3wa_ d.110.7.1 (A:) Giding protein MglB {Thermus thermophilus
          [TaxId: 274]}
          Length = 134

 Score = 26.8 bits (59), Expect = 1.4
 Identities = 8/63 (12%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 20 TEGVQSTMLMSYEGTLLAYSGHKDN----DGTVIAAITSNIWSAFEKNGRSAFKEDSLQM 75
            G +  +L+  +G +LA+              +A + +   +A +   +   +    + 
Sbjct: 21 ETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEARFQEE 80

Query: 76 VLM 78
          V  
Sbjct: 81 VHQ 83


>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor,
           catalytic domain {Escherichia coli [TaxId: 562]}
          Length = 295

 Score = 26.0 bits (57), Expect = 4.0
 Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 8/164 (4%)

Query: 9   KVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAF 68
            ++          G++  +    EG  +  +    +  T I A            G +  
Sbjct: 110 SIIRVSNSARGANGIKIALEEVQEGKPVIITSGNLSGCTTIVARKEGYIYKVH-TGTTKS 168

Query: 69  K--EDSLQMVLMECSVSFLSDILALEGPQESPLLSN-GLFSKRLMSYEGTLLAYSGHKDN 125
                S   V  + +V  L  +     P+   ++SN  L      ++E +L+ YS  +  
Sbjct: 169 LAGFTSTTGV--KKAVEVLELLTKEPIPRVEGIMSNDFLVDYLSENFEDSLITYSSSEKK 226

Query: 126 DGTVIAAITSNIWSAFEKN-GRSAFKEDSLQMVLMECSNGKVAI 168
             + I  I  N+ S F                 ++   +G V +
Sbjct: 227 PDSQITIIRDNV-SVFPYFLDNIPEHGFGTSATVLVRVDGNVVV 269


>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit
           3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 161

 Score = 24.3 bits (53), Expect = 8.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 72  SLQMVLMECSVSFLSDIL 89
           +L+MV M     F+ D L
Sbjct: 127 ALEMVQMAVEAKFVQDTL 144


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0533    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 673,892
Number of extensions: 27514
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 6
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)