BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6242
(541 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 103/267 (38%), Gaps = 32/267 (11%)
Query: 65 GRYLQATLDLHPGDRIARESPLIV----GPKLALAEPICLGCHKPLNPNLADNARCPRC- 119
G L+A L PG+ + R PL G + + + LG K + RC +C
Sbjct: 17 GNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLM--------RCSQCR 68
Query: 120 FWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSPKKYQ 179
CSA+C + H EC LK C+ + + + + + +K
Sbjct: 69 VAKYCSAKCQKKA-WPDHKRECKCLK-SCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLY 126
Query: 180 ELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKL-------PGDVLDDTSAKCLHWI 232
D+E++++K + E + +V + E++ P L + AK I
Sbjct: 127 SFYDLESNINKLTEDKK--EGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKV---I 181
Query: 233 CGVIEVNGVDIGRYTQGLYSVICLMEHNCLPN-AKHSNMMQSKLFVFRDTHI----STMY 287
C + ++ GLY I L+ H+C PN + N L RD + + Y
Sbjct: 182 CNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY 241
Query: 288 TNALWGTQPRREHLAITKYFNCSCERC 314
+ L ++ RR+ L F C C RC
Sbjct: 242 LDMLMTSEERRKQLRDQYCFECDCFRC 268
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 14 RCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCK-----KLPYEIKSSPLLGRYL 68
RC + +E L +CS C+ YC + QK+ W HK +CK K Y S LLGR +
Sbjct: 53 RCLLGKEK-LMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVV 111
Query: 69 QATLDLHPGD 78
+D P +
Sbjct: 112 FKLMDGAPSE 121
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 103/267 (38%), Gaps = 32/267 (11%)
Query: 65 GRYLQATLDLHPGDRIARESPLIV----GPKLALAEPICLGCHKPLNPNLADNARCPRC- 119
G L+A L PG+ + R PL G + + + LG K + RC +C
Sbjct: 15 GNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLM--------RCSQCR 66
Query: 120 FWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSPKKYQ 179
CSA+C + H EC LK C+ + + + + + +K
Sbjct: 67 VAKYCSAKCQKKA-WPDHKRECKCLK-SCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLY 124
Query: 180 ELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKL-------PGDVLDDTSAKCLHWI 232
D+E++++K + E + +V + E++ P L + AK I
Sbjct: 125 SFYDLESNINKLTEDRK--EGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKV---I 179
Query: 233 CGVIEVNGVDIGRYTQGLYSVICLMEHNCLPN-AKHSNMMQSKLFVFRDTHI----STMY 287
C + ++ GLY I L+ H+C PN + N L RD + + Y
Sbjct: 180 CNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY 239
Query: 288 TNALWGTQPRREHLAITKYFNCSCERC 314
+ L ++ RR+ L F C C RC
Sbjct: 240 LDMLMTSEERRKQLRDQYCFECDCFRC 266
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 14 RCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCK-----KLPYEIKSSPLLGRYL 68
RC + +E L +CS C+ YC + QK+ W HK +CK K Y S LLGR +
Sbjct: 51 RCLLGKEK-LMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVV 109
Query: 69 QATLDLHPGD 78
+D P +
Sbjct: 110 FKLMDGAPSE 119
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 103/267 (38%), Gaps = 32/267 (11%)
Query: 65 GRYLQATLDLHPGDRIARESPLIV----GPKLALAEPICLGCHKPLNPNLADNARCPRC- 119
G L+A L PG+ + R PL G + + + LG K + RC +C
Sbjct: 16 GNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLM--------RCSQCR 67
Query: 120 FWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSPKKYQ 179
CSA+C + H EC LK C+ + + + + + +K
Sbjct: 68 VAKYCSAKCQKKA-WPDHKRECKCLK-SCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLY 125
Query: 180 ELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKL-------PGDVLDDTSAKCLHWI 232
D+E++++K + E + +V + E++ P L + AK I
Sbjct: 126 SFYDLESNINKLTEDRK--EGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKV---I 180
Query: 233 CGVIEVNGVDIGRYTQGLYSVICLMEHNCLPN-AKHSNMMQSKLFVFRDTHI----STMY 287
C + ++ GLY I L+ H+C PN + N L RD + + Y
Sbjct: 181 CNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY 240
Query: 288 TNALWGTQPRREHLAITKYFNCSCERC 314
+ L ++ RR+ L F C C RC
Sbjct: 241 LDMLMTSEERRKQLRDQYCFECDCFRC 267
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 14 RCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCK-----KLPYEIKSSPLLGRYL 68
RC + +E L +CS C+ YC + QK+ W HK +CK K Y S LLGR +
Sbjct: 52 RCLLGKEK-LMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVV 110
Query: 69 QATLDLHPGD 78
+D P +
Sbjct: 111 FKLMDGAPSE 120
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 110/302 (36%), Gaps = 52/302 (17%)
Query: 57 EIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNARC 116
E+ +S GR L+AT + D I E +L +C C K RC
Sbjct: 10 EVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFK----RQEKLHRC 65
Query: 117 PRC-FWPACSARCSGLSDAH-THAPECAILKLGCETLLAYNDYKYEAI-LPLRCLILQRR 173
+C F C C DA H ECA +K Y E I L R + R
Sbjct: 66 GQCKFAHYCDRTCQ--KDAWLNHKNECAAIK-------KYGKVPNENIRLAARIMWRVER 116
Query: 174 SPKKYQE-----LKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKC 228
E + D++ H+ G EE ++ FL+ P S +
Sbjct: 117 EGTGLTEGCLVSVDDLQNHVEHFG------EEEQKELRVDVDTFLQYWPPQS-QQFSMQY 169
Query: 229 LHWICGVIEVNGVDIG--RYTQ----GLYSVICLMEHNCLPNAK---------------H 267
+ I GVI NG + R Q G++ + L+ H+C PN H
Sbjct: 170 ISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFH 229
Query: 268 SNM---MQSKLFVFRDTHISTMYTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYF 324
+ M +++ + ++ Y + L ++ RR L YF+CSCE C + +
Sbjct: 230 TQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLFL 289
Query: 325 SA 326
+A
Sbjct: 290 AA 291
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 15 CAVC--RETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKL 54
C C R+ LH+C CK YC + QK+ W HK +C +
Sbjct: 52 CHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAI 93
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 103/267 (38%), Gaps = 32/267 (11%)
Query: 65 GRYLQATLDLHPGDRIARESPLIV----GPKLALAEPICLGCHKPLNPNLADNARCPRC- 119
G L+A L PG+ + R PL G + + + LG K + RC +C
Sbjct: 15 GNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLM--------RCSQCR 66
Query: 120 FWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSPKKYQ 179
CSA+C + H EC LK C+ + + + + + +K
Sbjct: 67 VAKYCSAKCQKKA-WPDHKRECKCLK-SCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLY 124
Query: 180 ELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKL-------PGDVLDDTSAKCLHWI 232
D+E++++K + E + +V + E++ P L + AK I
Sbjct: 125 SFYDLESNINKLTEDRK--EGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKV---I 179
Query: 233 CGVIEVNGVDIGRYTQGLYSVICLMEHNCLPN-AKHSNMMQSKLFVFRDTHI----STMY 287
C + ++ GLY I L+ H+C PN + N L RD + + Y
Sbjct: 180 CNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY 239
Query: 288 TNALWGTQPRREHLAITKYFNCSCERC 314
+ L ++ RR+ L F C C RC
Sbjct: 240 LDMLMTSEERRKQLRDQYCFECDCFRC 266
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 14 RCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCK-----KLPYEIKSSPLLGRYL 68
RC + +E L +CS C+ YC + QK+ W HK +CK K Y S LLGR +
Sbjct: 51 RCLLGKEK-LMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVV 109
Query: 69 QATLDLHPGD 78
+D P +
Sbjct: 110 FKLMDGAPSE 119
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 103/267 (38%), Gaps = 32/267 (11%)
Query: 65 GRYLQATLDLHPGDRIARESPLIV----GPKLALAEPICLGCHKPLNPNLADNARCPRC- 119
G L+A L PG+ + R PL G + + + LG K + RC +C
Sbjct: 51 GNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLM--------RCSQCR 102
Query: 120 FWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSPKKYQ 179
CSA+C + H EC LK C+ + + + + + +K
Sbjct: 103 VAKYCSAKCQKKA-WPDHKRECKCLK-SCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLY 160
Query: 180 ELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKL-------PGDVLDDTSAKCLHWI 232
D+E++++K + E + +V + E++ P L + AK I
Sbjct: 161 SFYDLESNINKLTEDRK--EGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKV---I 215
Query: 233 CGVIEVNGVDIGRYTQGLYSVICLMEHNCLPN-AKHSNMMQSKLFVFRDTHI----STMY 287
C + ++ GLY I L+ H+C PN + N L RD + + Y
Sbjct: 216 CNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY 275
Query: 288 TNALWGTQPRREHLAITKYFNCSCERC 314
+ L ++ RR+ L F C C RC
Sbjct: 276 LDMLMTSEERRKQLRDQYCFECDCFRC 302
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 14 RCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCK-----KLPYEIKSSPLLGRYL 68
RC + +E L +CS C+ YC + QK+ W HK +CK K Y S LLGR +
Sbjct: 87 RCLLGKEK-LMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVV 145
Query: 69 QATLDLHPGD 78
+D P +
Sbjct: 146 FKLMDGAPSE 155
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 17/216 (7%)
Query: 109 NLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCL 168
L+ RC + F+ C+ C D H EC+ + + E + A + +
Sbjct: 61 GLSKCGRCKQAFY--CNVECQK-EDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQK 117
Query: 169 ILQRRSP-KKYQELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAK 227
I R+P +K +K+ E+H+ K E + I S + L +F K G +D+
Sbjct: 118 IHPERTPSEKLLAVKEFESHLDKLD--NEKKDLIQSDIAALH-HFYSKHLGFPDNDSLVV 174
Query: 228 CLHWI-CGVIEVNGVDIGRYTQGLYSVICLMEHNCLPNAKHSNMMQSKLFVFRDTH---- 282
+ C + ++ ++ + LM H+C PN + + L R
Sbjct: 175 LFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVT--YKGTLAEVRAVQEIKP 232
Query: 283 ---ISTMYTNALWGTQPRREHLAITKYFNCSCERCS 315
+ T Y + L+ T+ R + L + +F C C+ C+
Sbjct: 233 GEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECT 268
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 15 CAVC--RETALHKCSACKEVAYCGKQHQKEHWKLHKPKC 51
C C R+ L KC CK+ YC + QKE W +HK +C
Sbjct: 52 CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLEC 90
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 17/216 (7%)
Query: 109 NLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCL 168
L+ RC + F+ C+ C D H EC+ + + E + A + +
Sbjct: 61 GLSKCGRCKQAFY--CNVECQK-EDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQK 117
Query: 169 ILQRRSP-KKYQELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAK 227
I R+P +K +K+ E+H+ K E + I S + L +F K G +D+
Sbjct: 118 IHPERTPSEKLLAVKEFESHLDKLD--NEKKDLIQSDIAALH-HFYSKHLGFPDNDSLVV 174
Query: 228 CLHWI-CGVIEVNGVDIGRYTQGLYSVICLMEHNCLPNAKHSNMMQSKLFVFRDTH---- 282
+ C + ++ ++ + LM H+C PN + + L R
Sbjct: 175 LFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVT--YKGTLAEVRAVQEIKP 232
Query: 283 ---ISTMYTNALWGTQPRREHLAITKYFNCSCERCS 315
+ T Y + L+ T+ R + L + +F C C+ C+
Sbjct: 233 GEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECT 268
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 15 CAVC--RETALHKCSACKEVAYCGKQHQKEHWKLHKPKC 51
C C R+ L KC CK+ YC + QKE W +HK +C
Sbjct: 52 CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLEC 90
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 83/215 (38%), Gaps = 15/215 (6%)
Query: 109 NLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCL 168
L+ RC + F+ C+ C D H EC+ + + E + A + +
Sbjct: 61 GLSKCGRCKQAFY--CNVECQK-EDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQK 117
Query: 169 ILQRRSP-KKYQELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAK 227
I R+P +K +K+ E+H+ K E + I S + L + + L D
Sbjct: 118 IHPERTPSEKLLAVKEFESHLDKLD--NEKKDLIQSDIAALHHFYSKHLEFPDNDSLVVL 175
Query: 228 CLHWICGVIEVNGVDIGRYTQGLYSVICLMEHNCLPNAKHSNMMQSKLFVFRDTH----- 282
C + ++ ++ + LM H+C PN + + L R
Sbjct: 176 FAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVT--YKGTLAEVRAVQEIKPG 233
Query: 283 --ISTMYTNALWGTQPRREHLAITKYFNCSCERCS 315
+ T Y + L+ T+ R + L + +F C C+ C+
Sbjct: 234 EEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECT 268
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 15 CAVC--RETALHKCSACKEVAYCGKQHQKEHWKLHKPKC 51
C C R+ L KC CK+ YC + QKE W +HK +C
Sbjct: 52 CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLEC 90
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 104/263 (39%), Gaps = 24/263 (9%)
Query: 65 GRYLQATLDLHPGDRI----ARESPLIVGPKLALAEPICLGCHKPLNPNLADNARCPRCF 120
GR L+A H GD + A L VG + E C L+ RC + F
Sbjct: 18 GRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCE-----CCFARKEGLSKCGRCKQAF 72
Query: 121 WPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSP-KKYQ 179
+ C C D H EC+ + + E + A + + I R+P +K
Sbjct: 73 Y--CDVECQK-EDWPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPERTPSEKLL 129
Query: 180 ELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKCL--HWICGVIE 237
+++ E+H+ K E + I S + L + + L + D +S L C
Sbjct: 130 AVREFESHLDKLD--NEKKDLIQSDIAALHQFYSKYL--EFPDHSSLVVLFAQVNCNGFT 185
Query: 238 VNGVDIGRYTQGLYSVICLMEHNCLPNAKHS-NMMQSKLFVFRDTH----ISTMYTNALW 292
+ ++ ++ + LM H+C PN + +++ ++ H + T Y + L+
Sbjct: 186 IEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLY 245
Query: 293 GTQPRREHLAITKYFNCSCERCS 315
T+ R + L + +F C C C+
Sbjct: 246 PTEDRNDRLRDSYFFTCECRECT 268
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 15 CAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKL 54
C R+ L KC CK+ YC + QKE W LHK +C +
Sbjct: 54 CCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSM 93
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 100/267 (37%), Gaps = 32/267 (11%)
Query: 65 GRYLQATLDLHPGDRIARESPLIV----GPKLALAEPICLGCHKPLNPNLADNARCPRC- 119
G L+A L PG+ + R PL G + + + LG K RC +C
Sbjct: 16 GNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKL--------XRCSQCR 67
Query: 120 FWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSPKKYQ 179
CSA+C + H EC LK C+ + + + + +K
Sbjct: 68 VAKYCSAKCQKKA-WPDHKRECKCLK-SCKPRYPPDSVRLLGRVVFKLXDGAPSESEKLY 125
Query: 180 ELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKL-------PGDVLDDTSAKCLHWI 232
D+E++++K + E + +V + E++ P L + AK I
Sbjct: 126 SFYDLESNINKLTEDRK--EGLRQLVXTFQHFXREEIQDASQLPPAFDLFEAFAKV---I 180
Query: 233 CGVIEVNGVDIGRYTQGLYSVICLMEHNCLPN-AKHSNMMQSKLFVFRDTHI----STMY 287
C + + GLY I L+ H+C PN + N L RD + + Y
Sbjct: 181 CNSFTICNAEXQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY 240
Query: 288 TNALWGTQPRREHLAITKYFNCSCERC 314
+ L ++ RR+ L F C C RC
Sbjct: 241 LDXLXTSEERRKQLRDQYCFECDCFRC 267
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 14 RCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCK-----KLPYEIKSSPLLGRYL 68
RC + +E L +CS C+ YC + QK+ W HK +CK K Y S LLGR +
Sbjct: 52 RCLLGKEK-LXRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVV 110
Query: 69 QATLDLHPGD 78
D P +
Sbjct: 111 FKLXDGAPSE 120
>pdb|2DAN|A Chain A, The Solution Structure Of The Mynd Domain
(Leu384-Cys430) Of Human Zinc Finger Mynd Domain
Containing Protein 10
Length = 60
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 2 ASIIEIEDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKC 51
+S +E E RCA C A +CS C+ YC ++ Q +HW+ H C
Sbjct: 5 SSGLEAVAPERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 54
>pdb|2D8Q|A Chain A, Solution Structure Of The Mynd Domain Of The Human Zinc
Finger Mynd Domain-Containing Protein 10
Length = 70
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 2 ASIIEIEDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKC 51
+S +E E RCA C A +CS C+ YC ++ Q +HW+ H C
Sbjct: 5 SSGLEAVAPERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 54
>pdb|4ANM|A Chain A, Complex Of Ck2 With A Cdc7 Inhibitor
Length = 335
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 362 LNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHS 415
+NA + HLV+ + + +DKL++ + +E LT LEAM HP+ A ++S
Sbjct: 281 MNADNQHLVSPEAIDFLDKLLRYDH-----QERLTALEAMTHPYFQQVRAAENS 329
>pdb|2PVH|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVJ|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVK|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVL|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVM|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVN|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|3BE9|A Chain A, Structure-Based Design And Synthesis Of Novel Macrocyclic
Pyrazolo[1,5-A] [1,3,5]triazine Compounds As Potent
Inhibitors Of Protein Kinase Ck2 And Their Anticancer
Activities
Length = 352
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 362 LNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHS 415
+NA + HLV+ + + +DKL++ + +E LT LEAM HP+ A ++S
Sbjct: 300 MNADNQHLVSPEAIDFLDKLLRYDH-----QERLTALEAMTHPYFQQVRAAENS 348
>pdb|3PVG|A Chain A, Crystal Structure Of Z. Mays Ck2 Alpha Subunit In Complex
With The Inhibitor
4,5,6,7-Tetrabromo-1-Carboxymethylbenzimidazole (K68)
Length = 331
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 362 LNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHS 415
+NA + HLV+ + + +DKL++ + +E LT LEAM HP+ A ++S
Sbjct: 279 MNADNQHLVSPEAIDFLDKLLRYDH-----QERLTALEAMTHPYFQQVRAAENS 327
>pdb|2QC6|A Chain A, Protein Kinase Ck2 In Complex With Dbc
pdb|3FL5|A Chain A, Protein Kinase Ck2 In Complex With The Inhibitor
Quinalizarin
pdb|3PZH|A Chain A, Crystal Structure Of Maize Ck2 Alpha In Complex With
Emodin At 1.92 A Resolution
Length = 332
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 362 LNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHS 415
+NA + HLV+ + + +DKL++ + +E LT LEAM HP+ A ++S
Sbjct: 280 MNADNQHLVSPEAIDFLDKLLRYDH-----QERLTALEAMTHPYFQQVRAAENS 328
>pdb|1DS5|A Chain A, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|B Chain B, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|C Chain C, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|D Chain D, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1F0Q|A Chain A, Crystal Structure Of The Alpha Subunit Of Protein Kinase
Ck2 In Complex With The Nucleotide Competitive Inhibitor
Emodin
pdb|1J91|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Atp-Competitive Inhibitor 4,5,6,7-
Tetrabromobenzotriazole
pdb|1J91|B Chain B, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Atp-Competitive Inhibitor 4,5,6,7-
Tetrabromobenzotriazole
pdb|1JAM|A Chain A, Crystal Structure Of Apo-Form Of Z. Mays Ck2 Protein
Kinase Alpha Subunit
pdb|1LP4|A Chain A, Crystal Structure Of A Binary Complex Of The Catalytic
Subunit Of Protein Kinase Ck2 With Mg-Amppnp
pdb|1LPU|A Chain A, Low Temperature Crystal Structure Of The Apo-Form Of The
Catalytic Subunit Of Protein Kinase Ck2 From Zea Mays
pdb|1LR4|A Chain A, Room Temperature Crystal Structure Of The Apo-Form Of The
Catalytic Subunit Of Protein Kinase Ck2 From Zea Mays
pdb|1OM1|A Chain A, Crystal Structure Of Maize Ck2 Alpha In Complex With Iqa
pdb|1ZOE|A Chain A, Crystal Structure Of Protein Kinase Ck2 In Complex With
Tbb- Derivatives Inhibitors
pdb|1ZOG|A Chain A, Crystal Structure Of Protein Kinase Ck2 In Complex With
Tbb- Derivatives
pdb|1ZOH|A Chain A, Crystal Structure Of Protein Kinase Ck2 In Complex With
Tbb- Derivatives Inhibitors
pdb|2OXD|A Chain A, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole K17, K22 And K32 Inhibitors
pdb|2OXX|A Chain A, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole Derivatives K17, K22 And K32
pdb|2OXY|A Chain A, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole Derivatives K17, K22 And K32
pdb|2OXY|B Chain B, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole Derivatives K17, K22 And K32
pdb|3PWD|A Chain A, Crystal Structure Of Maize Ck2 In Complex With Nbc (Z1)
Length = 332
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 362 LNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHS 415
+NA + HLV+ + + +DKL++ + +E LT LEAM HP+ A ++S
Sbjct: 280 MNADNQHLVSPEAIDFLDKLLRYDH-----QERLTALEAMTHPYFQQVRAAENS 328
>pdb|1DAW|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase
Ck2 (Alpha-Subunit) And Mg-Amppnp
pdb|1DAY|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase
Ck2 (Alpha-Subunit) And Mg-Gmppnp
pdb|1M2Q|A Chain A, Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro-Xanten-9-
OneCK2 KINASE COMPLEX
pdb|1M2R|A Chain A, Crystal Structure Of 5,8-Di-Amino-1,4-Di-Hydroxy-
AnthraquinoneCK2 KINASE COMPLEX
pdb|3KXM|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor K74
pdb|3KXN|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor Tetraiodobenzimidazole (K88)
Length = 327
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 362 LNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHS 415
+NA + HLV+ + + +DKL++ + +E LT LEAM HP+ A ++S
Sbjct: 279 MNADNQHLVSPEAIDFLDKLLRYDH-----QERLTALEAMTHPYFQQVRAAENS 327
>pdb|3KXG|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor
3,4,5,6,7-Pentabromo-1h-Indazole (K64)
pdb|3KXH|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor
(2-Dymethylammino-4,5,6,7-Tetrabromobenzoimidazol-1yl-
Acetic Acid (K66)
Length = 327
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 362 LNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHS 415
+NA + HLV+ + + +DKL++ + +E LT LEAM HP+ A ++S
Sbjct: 279 MNADNQHLVSPEAIDFLDKLLRYDH-----QERLTALEAMTHPYFQQVRAAENS 327
>pdb|3IZS|G Chain G, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|F Chain F, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|F Chain F, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|E Chain E, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|E Chain E, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|E Chain E, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 176
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 52 KKLPYEIKSSPLLGRYLQATLDLHPGDR 79
K L EIK +PLL +YL A+ L GD+
Sbjct: 143 KALIAEIKKTPLLKQYLSASFSLKNGDK 170
>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal
Permeability-Increasing Protein
Length = 456
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 345 NPLDNDSDWTCGSCSARLNARDVHLVTSQLG 375
NP TC SCS+ +N+ VH+ S++G
Sbjct: 122 NPTSGKPTITCSSCSSHINSVHVHISKSKVG 152
>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi
Length = 456
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 345 NPLDNDSDWTCGSCSARLNARDVHLVTSQLG 375
NP TC SCS+ +N+ VH+ S++G
Sbjct: 122 NPTSGKPTITCSSCSSHINSVHVHISKSKVG 152
>pdb|1M2P|A Chain A, Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro-
AnthraquinoneCK2 KINASE COMPLEX
pdb|4DGO|A Chain A, Crystal Structure Of Maize Ck2 In Complex With Tyrphostin
Ag99
Length = 325
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 362 LNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPH 405
+NA + HLV+ + + +DKL++ + +E LT LEAM HP+
Sbjct: 279 MNADNQHLVSPEAIDFLDKLLRYDH-----QERLTALEAMTHPY 317
>pdb|4DGN|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The
Inhibitor Luteolin
Length = 326
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 362 LNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPH 405
+NA + HLV+ + + +DKL++ + +E LT LEAM HP+
Sbjct: 279 MNADNQHLVSPEAIDFLDKLLRYDH-----QERLTALEAMTHPY 317
>pdb|4DGM|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The
Inhibitor Apigenin
Length = 326
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 362 LNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPH 405
+NA + HLV+ + + +DKL++ + +E LT LEAM HP+
Sbjct: 279 MNADNQHLVSPEAIDFLDKLLRYDH-----QERLTALEAMTHPY 317
>pdb|4A24|A Chain A, Structural And Functional Analysis Of The Deaf-1 And
Bs69 Mynd Domains
Length = 47
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 15 CAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKK 53
C C A+ +C+ C +V YC Q++ WK H+ C +
Sbjct: 7 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQ 45
>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain
Length = 52
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 15 CAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKC 51
C C A+ +C+ C +V YC Q++ WK H+ C
Sbjct: 12 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHIC 48
>pdb|2DJ8|A Chain A, Solution Structure Of Zf-Mynd Domain Of Protein Cbfa2ti
(Protein Mtg8)
Length = 60
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 2 ASIIEIEDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKC 51
+S I +++ C C A CS C YCG Q + W+ H C
Sbjct: 5 SSGINQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,117,560
Number of Sequences: 62578
Number of extensions: 727428
Number of successful extensions: 2133
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2064
Number of HSP's gapped (non-prelim): 62
length of query: 541
length of database: 14,973,337
effective HSP length: 104
effective length of query: 437
effective length of database: 8,465,225
effective search space: 3699303325
effective search space used: 3699303325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)