RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6242
(541 letters)
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 140 bits (352), Expect = 2e-36
Identities = 53/373 (14%), Positives = 115/373 (30%), Gaps = 35/373 (9%)
Query: 55 PYEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNA 114
E S GR L+A H GD + + C C
Sbjct: 8 GLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLS---- 63
Query: 115 RCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRS 174
+C RC D H EC+ + + E + A + + I R+
Sbjct: 64 KCGRCKQAFYCDVECQKEDWPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPERT 123
Query: 175 PK-KYQELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKCLHWIC 233
P K +++ E+H+ K E + I S + L + + L C
Sbjct: 124 PSEKLLAVREFESHLDKLDN--EKKDLIQSDIAALHQFYSKYLEFPDHSSLVVLFAQVNC 181
Query: 234 GVIEVNGVDIGRYTQGLYSVICLMEHNCLPNAKHS-NMMQSKLFVFRD----THISTMYT 288
+ ++ ++ + LM H+C PN + +++ ++ + T Y
Sbjct: 182 NGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYI 241
Query: 289 NALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNEHKDQGDCWILPVNPLD 348
+ L+ T+ R + L + +F C C C+ + K + + + ++
Sbjct: 242 DLLYPTEDRNDRLRDSYFFTCECRECTTKDKDKAKVEVRKLSSPPQAEAIRDMV---RYA 298
Query: 349 NDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYH 408
+ + ++ ++ E K+ ++F + +
Sbjct: 299 RNVIEEFRRAKHYKSPSEL--------------------LEICELSQEKMSSVFEDSNVY 338
Query: 409 CYAVKHSLIQLYG 421
+ + + +
Sbjct: 339 MLHMMYQAMGVCL 351
Score = 37.2 bits (85), Expect = 0.013
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 14 RCAVC--RETALHKCSACKEVAYCGKQHQKEHWKLHKP 49
C C R+ L KC CK+ YC + QKE W LHK
Sbjct: 51 HCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKL 88
Score = 30.2 bits (67), Expect = 1.8
Identities = 13/84 (15%), Positives = 20/84 (23%), Gaps = 4/84 (4%)
Query: 453 EPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYN 512
C C +C RC D H EC+ + + E
Sbjct: 49 GHHCECCFARKEGLS----KCGRCKQAFYCDVECQKEDWPLHKLECSSMVVLGENWNPSE 104
Query: 513 DYKSLSRAYLDHQQVRSWTQSSDN 536
+ +R + T S
Sbjct: 105 TVRLTARILAKQKIHPERTPSEKL 128
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 138 bits (349), Expect = 9e-36
Identities = 68/391 (17%), Positives = 123/391 (31%), Gaps = 62/391 (15%)
Query: 55 PYEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNA 114
E+ +S GR L+AT + D I E +L +C C K
Sbjct: 8 NVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLH---- 63
Query: 115 RCPRCFWPA-CSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRR 173
RC +C + C C + + H ECA +K + I+
Sbjct: 64 RCGQCKFAHYCDRTCQKDAWLN-HKNECAAIKKYGKVPNENIRLAA-RIMWRVEREGTGL 121
Query: 174 SPKKYQELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKCLHWIC 233
+ + D++ H+ G E +E+ V + + S + + I
Sbjct: 122 TEGCLVSVDDLQNHVEHFGE--EEQKELRVDVDTFLQYWPPQS-----QQFSMQYISHIF 174
Query: 234 GVIEVNGVDI------GRYTQGLYSVICLMEHNCLPNAKHS--------------NMMQS 273
GVI NG + G++ + L+ H+C PN M+
Sbjct: 175 GVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRI 234
Query: 274 KLFVFRD----THISTMYTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKC 329
+L ++ Y + L ++ RR L YF+CSCE C + + +A +
Sbjct: 235 ELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAAKED 294
Query: 330 LNEHKDQGDCWILPVNPLDNDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQENPNVK 389
++ + + D+ + +V VK
Sbjct: 295 PKPSQE----VVKEMIQFSKDTLEKIDKARSEGLYHEV--------------------VK 330
Query: 390 SLEEMLTKLEAMFHPHHYHCYAVKHSLIQLY 420
E L K E +F + + + ++
Sbjct: 331 LCRECLEKQEPVFADTNLYVLRLLSIASEVL 361
Score = 39.2 bits (90), Expect = 0.003
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 14 RCAVC--RETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKLPYEIKSSPLLGRYLQAT 71
C C R+ LH+C CK YC + QK+ W HK +C + K R
Sbjct: 51 VCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYGKVPNENIRLAARI 110
Query: 72 LDLH 75
+
Sbjct: 111 MWRV 114
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 130 bits (328), Expect = 3e-33
Identities = 61/374 (16%), Positives = 118/374 (31%), Gaps = 24/374 (6%)
Query: 52 KKLPYEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLA 111
+ L E ++ G L+A L PG+ + R PL +C C +
Sbjct: 3 EPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLM- 61
Query: 112 DNARCPRC-FWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLIL 170
RC +C CSA+C + + + + + + +
Sbjct: 62 ---RCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYP--PDSVRLLGRVVFKLMDG 116
Query: 171 QRRSPKKYQELKDMEAHMSKRG--PGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKC 228
+K D+E++++K + + + + ++R + D
Sbjct: 117 APSESEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAF 176
Query: 229 LHWICGVIEVNGVDIGRYTQGLYSVICLMEHNCLPNAKHS-NMMQSKLFVFRD----THI 283
IC + ++ GLY I L+ H+C PN N L RD +
Sbjct: 177 AKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEEL 236
Query: 284 STMYTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNE--HKDQGDCWI 341
+ Y + L ++ RR+ L F C C RC + + + + + +
Sbjct: 237 TICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEE 296
Query: 342 LPVNPLDNDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQENPNVKSLEE-------M 394
L + C + N+ + + + +D + N+ LEE
Sbjct: 297 LKAHWKWEQVLAMCQAI-ISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT 355
Query: 395 LTKLEAMFHPHHYH 408
+ F H
Sbjct: 356 MEPYRIFFPGSHPV 369
Score = 35.6 bits (81), Expect = 0.040
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 19 RETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKLP 55
+ L +CS C+ YC + QK+ W HK +CK L
Sbjct: 56 GKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLK 92
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10;
zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Length = 70
Score = 64.3 bits (156), Expect = 2e-13
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 2 ASIIEIEDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKL 54
+S +E E RCA C A +CS C+ YC ++ Q +HW+ H C
Sbjct: 5 SSGLEAVAPERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLA 57
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal
binding protein; NMR {Homo sapiens}
Length = 60
Score = 63.0 bits (153), Expect = 4e-13
Identities = 13/47 (27%), Positives = 17/47 (36%)
Query: 8 EDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKL 54
+ C C A CS C YCG Q + W+ H C +
Sbjct: 9 NSDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQT 55
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.85.1.1
Length = 60
Score = 63.0 bits (153), Expect = 4e-13
Identities = 15/53 (28%), Positives = 21/53 (39%)
Query: 2 ASIIEIEDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKL 54
+S I +++ C C A CS C YCG Q + W+ H C
Sbjct: 5 SSGINQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICSGP 57
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding
domain, transcription, alternative splicing, DI
mutation, DNA-binding; NMR {Homo sapiens} SCOP:
g.85.1.1
Length = 52
Score = 62.1 bits (151), Expect = 7e-13
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 8 EDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKK 53
+ + C C A+ +C+ C +V YC Q++ WK H+ C +
Sbjct: 5 AERKEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQ 50
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology,
poly-proline, proline-tryptophan interaction, metal
binding protein; NMR {Homo sapiens}
Length = 64
Score = 62.7 bits (152), Expect = 7e-13
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 8 EDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKL 54
+ + C C A CS C YCG Q + W+ H C +
Sbjct: 13 QGDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQT 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 6e-05
Identities = 54/360 (15%), Positives = 100/360 (27%), Gaps = 101/360 (28%)
Query: 146 LGCETLLAYNDYKYEAILPLRCLILQRRSPKKYQELKDMEAHMSKRGPGTEVYEEIDSIV 205
L C+ LL + + S + + E ++
Sbjct: 264 LSCKILLTTRFKQ----------VTDFLSAATTTHIS-----LDHHSMTLTPDEVKSLLL 308
Query: 206 KYLRSNFLEKLPGDVLDDTSAKCLHWICGVIEVNGVDIGRYTQ----GLYSVI--CLMEH 259
KYL + LP +VL T+ + L I I + L ++I L
Sbjct: 309 KYLDCRP-QDLPREVLT-TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--- 363
Query: 260 NCLPNAKHSNMMQSKLFVFR-DTHISTMYTNALWGTQPRREHLAITKYFN--CSCERCSD 316
N L A++ M L VF HI T+ + +W + + + + + E+
Sbjct: 364 NVLEPAEYRKMFDR-LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--Q 420
Query: 317 PTELGTYF-------SAMKCLNE---HK---------DQGDCWILPVNPLDNDSDWTCGS 357
P E T +K NE H+ D L LD G
Sbjct: 421 PKE-STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 358 CSARLNARDVHLVTSQLGEQVD--------------KLVQEN------------------ 385
HL + E++ K+ ++
Sbjct: 480 ----------HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 386 ------PNVKSLEEMLTKLEAMFHPHHYHCYAVKHS-LIQLYGTQPGYAYTQLSSSLLER 438
N E ++ + + K++ L+++ A + + ++R
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 43.3 bits (101), Expect = 2e-04
Identities = 45/320 (14%), Positives = 91/320 (28%), Gaps = 104/320 (32%)
Query: 156 DYKYEAILPLRCLILQRRSPKKY--QELKDMEAHMSKRGPGTEVYEEIDSIVK------- 206
Y+Y+ IL + + + ++++DM + + EEID I+
Sbjct: 15 QYQYKDILS----VFEDAFVDNFDCKDVQDMPKSILSK-------EEIDHIIMSKDAVSG 63
Query: 207 --YL-------RSNFLEKLPGDVLDDTSAKCLHWICGVIEVNGVDIGRYTQGLYSVICLM 257
L + ++K +VL ++ I+ T+ +Y
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRIN----YKFLMSPIKTEQRQPSMMTR-MYI----E 114
Query: 258 EHNCLPNAKHSNMMQSKLFVFRDTHISTMYTNALWGTQPRRE---H---------LA--- 302
+ + L N N + +K V R + AL +P + +A
Sbjct: 115 QRDRLYN---DNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 303 -----ITKYFNC-----SCERCSDPTEL-----GTYFSAMKCLNEHKDQGDCWILPVNP- 346
+ + + + C+ P + + D L ++
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 347 -------------------LDNDSDWTCGSCSARLNARDVH---LVTSQLGEQVDKLVQE 384
L N + NA ++ L+T++ + D L
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKA------WNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 385 NPNVKSLEEM---LTKLEAM 401
SL+ LT E
Sbjct: 285 TTTHISLDHHSMTLTPDEVK 304
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 7e-05
Identities = 54/357 (15%), Positives = 96/357 (26%), Gaps = 134/357 (37%)
Query: 208 LRSNFLEKLP----GDVLDD--TS-----AKCLHWICGVIEVNGVDIGRYTQGLYSVICL 256
L+ F + LP G DD T+ K L ++ ++E + +G++ Q L +
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS--KVGQFDQVLNLCLTE 90
Query: 257 MEHNCLPNAKHSNMMQSKLFVFRDTHISTMYTNALWGTQPRREHLAITKYFNCSCERCSD 316
E+ L N D H AL + + K
Sbjct: 91 FENCYL----EGN----------DIH-------ALAAKLLQENDTTLVKTKEL------- 122
Query: 317 PTELGTYFSAMKCLNEHKDQGDCWILPVNPLDNDSDWTCGSCSARLNA---RDVHLVTSQ 373
+ Y +A P D S+ SA A + LV
Sbjct: 123 ---IKNYITARIMAKR-------------PFDKKSN------SALFRAVGEGNAQLVA-I 159
Query: 374 LGEQ------VDKLVQE-----NPNVKSL----EEMLTKL---EAMFHPHHYHCYAVKHS 415
G Q ++L ++ + V L E L++L +
Sbjct: 160 FGGQGNTDDYFEEL-RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-LE 217
Query: 416 LIQLYGTQPGYAY-------------TQLSSSLLERKISYV----MSPNLKATDEPICLG 458
++ P Y QL+ ++ K+ + LK G
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-----TG 272
Query: 459 CHKPL-----------NPNLADNARCPRC----FWPACSARCSGLSDAHTHAPECAI 500
+ L + + R + F+ RC + P ++
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVR--KAITVLFF--IGVRC------YEAYPNTSL 319
Score = 42.0 bits (98), Expect = 5e-04
Identities = 23/137 (16%), Positives = 37/137 (27%), Gaps = 32/137 (23%)
Query: 21 TALHKCSACKEVAYCGKQHQKEHWKLHKPKCKK--LPYEIKSSPLLGRYLQATLDLHPGD 78
L K A + Q + + K K LP + +SP L DL D
Sbjct: 391 LTLRKAKAPSGL----DQSRIPFSE-RKLKFSNRFLP--V-ASPFHSHLLVPASDLINKD 442
Query: 79 RIARESPLIVGPKLALAEPI---CLG-----CHKPLNPNLADNARCPRCFWPACSARCSG 130
+ + + + + P+ G ++ + D W
Sbjct: 443 -LVKNNVSFNAKDIQI--PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT------ 493
Query: 131 LSDAHTHAPECAILKLG 147
TH IL G
Sbjct: 494 TQFKATH-----ILDFG 505
Score = 37.0 bits (85), Expect = 0.022
Identities = 58/348 (16%), Positives = 95/348 (27%), Gaps = 112/348 (32%)
Query: 16 AVCRETALHKCSACKEVAYCGKQHQK----EHWKLHKPKCKKLP---Y----EIKSSPLL 64
+ + +A + K + W L P P Y I S PL+
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-LENPS--NTPDKDYLLSIPI-SCPLI 241
Query: 65 G-----RYLQA--TLDLHPGDRIAR-ESPLIVGPKLALAEPICLGCHKPLNPNLADNA-- 114
G Y+ L PG+ + + L A I + +
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET---DSWESFFVSVRK 298
Query: 115 ----------RCPRCFWPACSARCSGLSDAHTH---APEC--AILKLGCETLLAYNDYKY 159
RC + P S S L D+ + P +I L E + Y + K
Sbjct: 299 AITVLFFIGVRCYEAY-PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-KT 356
Query: 160 EAILP------------------------LRCLILQRRSPKKYQELKDMEAHMSKRGPGT 195
+ LP L L L R K L S+R
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL-- 414
Query: 196 EVYEEIDSIVKYLR------SNFL----EKLPGDVLDDT---SAKCLHWICGVIEV---- 238
++L S+ L + + D++ + +AK + I V
Sbjct: 415 ------KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ-----IPVYDTF 463
Query: 239 NGVDIGRYTQGLYSVI--CLMEHNCL-PNAKHSNMMQSKLFVFRDTHI 283
+G D+ + + I C++ F+ THI
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQ----------FKATHI 501
Score = 36.6 bits (84), Expect = 0.024
Identities = 80/559 (14%), Positives = 132/559 (23%), Gaps = 222/559 (39%)
Query: 60 SSP--LLGRYLQ--ATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPN-LADNA 114
++P L+G++L ++L + P + L L L E L N
Sbjct: 55 TTPAELVGKFLGYVSSL-VEPSKVGQFDQVL----NLCLTE---------FENCYLEGN- 99
Query: 115 RCPRCFWPACSARCSGLSDAHTHA------PECAILKLGCETLLAYNDYKYEAILPLRCL 168
D H A + ++K E + Y A +
Sbjct: 100 ------------------DIHALAAKLLQENDTTLVKTK-ELIKNY----ITA-----RI 131
Query: 169 ILQRRSPKKYQE--LKDMEAHMSKR-----GPG-TEVY-EE-----------IDSIVKYL 208
+ +R KK + + ++ G G T+ Y EE + ++K+
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS 191
Query: 209 RSNFLEKLPGDVLDDTSA-----KCLHWICGVIEVNGVD-----------IGRYTQ-GLY 251
+ L +L LD L W+ D IG Q Y
Sbjct: 192 -AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG-VIQLAHY 249
Query: 252 SVICLMEHNCLPNAKHSNMMQSKLFVFRD----THIST------MYTNALWGTQPRREHL 301
V P + + ++ + I+ + +
Sbjct: 250 VVTA-KLLGFTP-GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR---------K 298
Query: 302 AITKYFNCSCERC--------------SDPTELG-TYFSAM-KCLNEHKDQGDCWILPVN 345
AIT F RC D E S M N ++Q ++ N
Sbjct: 299 AITVLFFIGV-RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 346 P-LDNDSDWTCGSCSARL-NARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFH 403
L L N +V+ G P +SL + L
Sbjct: 358 SHLPAGKQ-----VEISLVNGAKNLVVS---G---------PP--QSLYGLNLTLRKAKA 398
Query: 404 PHHYHCYAVKHSLIQLYGTQPGYAYTQLSSSLLERKISYVM----------SPNLKATDE 453
P + S ERK+ + S L +
Sbjct: 399 PSGLDQSRIPFS---------------------ERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 454 PIC--------------LGC--------------HKPLNPNLADNARCPRCFWPACSARC 485
I + ++ + D W
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT---- 493
Query: 486 SGLSDAHTHAPECAILKLG 504
TH IL G
Sbjct: 494 --TQFKATH-----ILDFG 505
Score = 36.2 bits (83), Expect = 0.033
Identities = 47/323 (14%), Positives = 91/323 (28%), Gaps = 104/323 (32%)
Query: 257 MEHNCL-PNAKHSNMMQSKLFVFRDTHISTMY--TNALWGT-QPR-REHLAITKY--FNC 309
+EH L P A Q ++ + T +P L K+ +
Sbjct: 16 LEHVLLVPTASFFIASQ-----LQEQFNKILPEPTEGFAADDEPTTPAELV-GKFLGY-- 67
Query: 310 SCERCSDPTELGTYFSAMK-CLNEHKDQGDCWILPVNPLDNDSDWTCGSCSARLNARDVH 368
+P+++G + + CL E + + L D+H
Sbjct: 68 -VSSLVEPSKVGQFDQVLNLCLTEFE------------------------NCYLEGNDIH 102
Query: 369 LVTSQLGEQVDK-LVQENPNVKS-------LEEMLTKLE--AMFHPHHYHCYAVKHSLIQ 418
+ ++L ++ D LV+ +K+ + K A+F AV Q
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR-------AVGEGNAQ 155
Query: 419 LY------GTQPGYAYTQLSSSLLERKISYVMSPNLKATDEPICLGCHKPLNPNLADNAR 472
L G Y + +L R + Y L + + L+ +
Sbjct: 156 LVAIFGGQGNTDDY-FEEL------RDL-YQTYHVLV---GDLIKFSAETLSELIRTTLD 204
Query: 473 CPRCF--------WPACSARCSGLSDAHTHAPECAILKLGCE------TLLAYNDYKSLS 518
+ F W L + P+ L L ++ Y +
Sbjct: 205 AEKVFTQGLNILEW---------LENPSN-TPDKDYL-LSIPISCPLIGVIQLAHYVVTA 253
Query: 519 RAY-LDHQQVRSWTQSSDNVFGC 540
+ ++RS+ + G
Sbjct: 254 KLLGFTPGELRSYLKG---ATGH 273
Score = 30.4 bits (68), Expect = 2.0
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 36/112 (32%)
Query: 357 SCSAR--LNARDVHLVTSQLGEQVDKLVQENPNV----------KSLEEMLTKL------ 398
S +A+ N D H G + +V NP K + E + +
Sbjct: 1639 SKAAQDVWNRADNHF-KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 399 ------EAMFHPHHYHC--YAVKHSLIQLYGTQPGYAYTQ-----LSSSLLE 437
E +F + H Y + L TQ +TQ + + E
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ----FTQPALTLMEKAAFE 1745
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.005
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 48 KPKCKKL-----PYEIKSSPLLGRYLQATLD 73
K KKL Y S+P L ++AT++
Sbjct: 19 KQALKKLQASLKLYADDSAPALA--IKATME 47
Score = 31.1 bits (69), Expect = 0.45
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 19/47 (40%)
Query: 52 KKLPYEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPI 98
K+ +K LQA+L L+ A +S P LA+ +
Sbjct: 19 KQ---ALKK-------LQASLKLY-----ADDS----APALAIKATM 46
Score = 29.5 bits (65), Expect = 1.6
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 176 KKYQELKDMEAHMSKRGPGT 195
+K Q LK ++A + +
Sbjct: 18 EK-QALKKLQASLKLYADDS 36
Score = 28.8 bits (63), Expect = 3.1
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 384 ENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHSL 416
E +K L+ L KL A A+K ++
Sbjct: 18 EKQALKKLQASL-KLYA---DDSAPALAIKATM 46
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase,
glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo
sapiens} PDB: 3thc_A*
Length = 654
Score = 34.0 bits (77), Expect = 0.12
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 207 YLRSNF-LEKLPGDVLDDTSAKCLHWICGVIEVNGVDIGRY 246
+ NF + D+ DT + W G + +NG ++GRY
Sbjct: 528 FYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRY 568
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller,
glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB:
4e8c_A
Length = 595
Score = 33.5 bits (76), Expect = 0.18
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 219 DVLDDTSAKCLHWICGVIEVNGVDIGRY 246
+ DT + GV VNG ++GR+
Sbjct: 516 EEPKDTYLDLSEFGKGVAFVNGQNLGRF 543
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF-
B_BOX, structural genomics, NPPSFA; NMR {Mus musculus}
SCOP: g.43.1.1
Length = 67
Score = 30.0 bits (67), Expect = 0.33
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 8 EDEELMRCAVCRETALHKCSACKEVAYCG----KQHQKEHWKLHK 48
L C +C E A +C+ C YC + H K H+
Sbjct: 4 GSSGLPWCCICNEDATLRCAGCDGDLYCARCFREGHDNFDLKEHQ 48
>2pd1_A Hypothetical protein; unknown function, NE2512 protein, structural
genomics, APC72 2, protein structure initiative; 1.86A
{Nitrosomonas europaea} SCOP: d.58.4.11
Length = 104
Score = 30.3 bits (68), Expect = 0.42
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 364 ARDVHL---VTSQLGEQVDKLVQENPNVKSLEEMLTKL 398
R HL + + L L+ PN++ +E + KL
Sbjct: 63 GRQAHLNGQIAAALMANAATLLSSPPNIEKVELLAAKL 100
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II,
NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides
thetaiotaomicron vpi-5482}
Length = 612
Score = 32.0 bits (72), Expect = 0.64
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 207 YLRSNFLEKLPGDVLDDTSAKCLHWICGVIEVNGVDIGRY 246
Y RS F GD + +W G++ VNG IGRY
Sbjct: 510 YYRSTFNLNELGDTFLNMM----NWSKGMVWVNGHAIGRY 545
>1gnt_A HCP, hybrid cluster protein; oxidoreductase, aerobic
desulfovibrio vulgaris; HET: FSO; 1.25A {Desulfovibrio
vulgaris} SCOP: e.26.1.1 PDB: 1e9v_A 1e2u_A* 1oa1_A
1w9m_A 1e1d_A*
Length = 553
Score = 28.8 bits (64), Expect = 5.3
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 13 MRCAVCRETALHKCSACKEVAYCGKQ 38
M C C+ETA K + C CGK
Sbjct: 1 MFCFQCQETA--KNTGCTVKGMCGKP 24
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces
cerevisiae} PDB: 3mhh_A 3m99_A
Length = 476
Score = 28.8 bits (64), Expect = 5.5
Identities = 9/41 (21%), Positives = 10/41 (24%), Gaps = 3/41 (7%)
Query: 13 MRCAVCRETA---LHKCSACKEVAYCGKQHQKEHWKLHKPK 50
M+C C E C C H H K
Sbjct: 49 MKCGTCHEINSGATFMCLQCGFCGCWNHSHFLSHSKQIGHI 89
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA;
metallochaperone, metal-binding, metal- binding protein;
NMR {Helicobacter pylori}
Length = 119
Score = 27.1 bits (60), Expect = 7.9
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 78 DRIARESPLIVGPKLALAEP----ICLGCHKPLNPNLADNARCPRC 119
+ ES + L + + C C PN D C +C
Sbjct: 51 ETFREESLVCKDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKC 96
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal
region, MA2 domain, W2 domain, EIF4G2, EIF family
translation; HET: MES PG4; 2.00A {Homo sapiens}
Length = 364
Score = 28.0 bits (61), Expect = 8.0
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 373 QLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHSL 416
+L + + +V E N + E + + M P H+ + +
Sbjct: 10 ELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVI 53
>1gnl_A HCP, hybrid cluster protein; anaerobic desulfovibrio
desulfuricans, iron anomalous; HET: FSO; 1.25A
{Desulfovibrio desulfuricans} SCOP: e.26.1.1 PDB:
1gn9_A* 1oa0_A* 1upx_A*
Length = 544
Score = 28.0 bits (62), Expect = 9.4
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 13 MRCAVCRETALHKCSACKEVAYCGKQ 38
M C C+ET C +V CGK+
Sbjct: 4 MFCYQCQETV--GNKGCTQVGVCGKK 27
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 26.8 bits (58), Expect = 9.6
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 444 MSPNLKATDEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPE 497
M N+ C+ C + L + + C C C+ +C + + P
Sbjct: 46 MRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCT-KCGVETSNNRPHPV 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.441
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,199,685
Number of extensions: 481446
Number of successful extensions: 1691
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1674
Number of HSP's successfully gapped: 71
Length of query: 541
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 443
Effective length of database: 3,965,535
Effective search space: 1756732005
Effective search space used: 1756732005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.4 bits)