BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6249
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 122 bits (305), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/92 (63%), Positives = 71/92 (77%)
Query: 28 AASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLD 87
AA YEFTTL +PGVI YKGA IQ+LDLPGII+GA G+GRG+QVIAVART +L+ ++LD
Sbjct: 99 AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILD 158
Query: 88 ATKQDVQRGLLEKELESVGIRLNKKKPNIYFK 119
K + ++EKELE VGIRLNK P+I K
Sbjct: 159 VNKPLHHKQIIEKELEGVGIRLNKTPPDILIK 190
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 29 ASYEFTTLTCIPGVIEY-KGANIQLLDLPGIIEGAAQGKGRGRQVI-AVARTADLVLMML 86
A Y FTTL+ GV+E + L D+PGIIEGA++GKG G + + +ART ++L +L
Sbjct: 185 APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART-RVLLYVL 243
Query: 87 DATKQDVQ 94
DA + ++
Sbjct: 244 DAADEPLK 251
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 29 ASYEFTTLTCIPGVIEYK-GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLD 87
A Y FTTL G +E G + DLPG+IEGA QG G G Q + +++ ++D
Sbjct: 186 ADYHFTTLVPNLGXVETDDGRSFVXADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVID 245
Query: 88 AT 89
+
Sbjct: 246 XS 247
>pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane
Remodelling
Length = 550
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 49 NIQLLDLPGIIEGAAQGKGRGRQVIAVAR----TADLVLMMLDATKQDVQR------GLL 98
+I ++D PGI+ GA Q RG AV R DL++++ DA K ++ G L
Sbjct: 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL 214
Query: 99 EKELESVGIRLNK 111
+ + + LNK
Sbjct: 215 RGHEDKIRVVLNK 227
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 30 SYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKG--RGRQVIAVARTADLVLMMLD 87
SY FTT G ++K Q++D PG+++ A + + + A+A ++L ++D
Sbjct: 58 SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIID 117
Query: 88 ATKQ 91
++Q
Sbjct: 118 ISEQ 121
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 32.0 bits (71), Expect = 0.096, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 36 LTCIPGVIEYKGAN------IQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDAT 89
L C P Y+ N ++ +D+ G++ GA +G+G G + + R A ++ ++DAT
Sbjct: 53 LGCSPNPQNYEYRNGLALIPVKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDAT 112
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 36 LTCIPG----VIEYK----GANIQLLDLPGIIEGAAQ----GKGRGRQVIAVARTADLVL 83
+T +PG V+E + G +Q+LD GI E + Q G R RQ A TADLVL
Sbjct: 252 VTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQA---ANTADLVL 308
Query: 84 MMLDA 88
+ +DA
Sbjct: 309 LTIDA 313
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 29 ASYEFTTLTCIPGVIEYKGANIQLLDLPGIIE-GAAQGKGRGRQVIAVARTADLVLMMLD 87
A++ T+ GV YKG I L+DLPG G + + + + ADLV+++ D
Sbjct: 33 ANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVAD 92
Query: 88 ATKQDVQRGLLEKELE 103
+ + LL + LE
Sbjct: 93 SVNPEQSLYLLLEILE 108
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 29 ASYEFTTLTCIPGVIEYKGANIQLLDLPGIIE-GAAQGKGRGRQVIAVARTADLVLMMLD 87
A++ T+ GV YKG I L+DLPG G + + + + ADLV+++ D
Sbjct: 33 ANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVAD 92
Query: 88 ATKQDVQRGLLEKELE 103
+ + LL + LE
Sbjct: 93 SVNPEQSLYLLLEILE 108
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 29 ASYEFTTLTCIPGVIEYKGANIQLLDLPGIIE-GAAQGKGRGRQVIAVARTADLVLMMLD 87
A++ T+ GV YKG I L+DLPG G + + + + ADLV+++ D
Sbjct: 33 ANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVAD 92
Query: 88 A 88
+
Sbjct: 93 S 93
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 17/82 (20%)
Query: 28 AASYEFTTLTCIPGVIEYKG-----------------ANIQLLDLPGIIEGAAQGKGRGR 70
AA+Y F T+ GV+ ++ +D+ G++ GA++G+G G
Sbjct: 29 AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGN 88
Query: 71 QVIAVARTADLVLMMLDATKQD 92
+ +A R D + ++ + D
Sbjct: 89 KFLANIRETDAIGHVVRCFEND 110
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 48 ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR----TADLVLMMLDATK 90
A I LD PGI E + G ++ +A+ AD++L M+DAT+
Sbjct: 58 AQIIFLDTPGIYE-PKKSDVLGHSMVEIAKQSLEEADVILFMIDATE 103
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 72 VIAVARTADLVLMMLDATKQDVQRGLLE 99
+IA A +AD ++++D+++ + +RG LE
Sbjct: 272 MIAGASSADFAVLVVDSSQNNFERGFLE 299
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 48 ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR----TADLVLMMLDATK 90
A I LD PGI E + G ++ +A+ AD++L M+DAT+
Sbjct: 59 AQIIFLDTPGIYE-PKKSDVLGHSMVEIAKQSLEEADVILFMIDATE 104
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 74 AVARTADLVLMMLDATKQDVQRGLLEKELESVGIRLNK 111
AVA A ++ DA + D+++GL ++LE + I LN+
Sbjct: 108 AVAVEAATYTLLRDAHRIDLEKGLENQDLEDLDIPLNE 145
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 49 NIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77
+++ +D+ G+++GA +G+G G Q +A R
Sbjct: 70 HVEFVDIAGLVKGAHKGEGLGNQFLAHIR 98
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 74 AVARTADLVLMMLDATKQDVQRGLLEKELESVGIRLNK 111
AVA A ++ DA + D+++GL ++LE + I LN+
Sbjct: 108 AVAVEAATYTLLRDAHRIDLEKGLENQDLEDLDIPLNE 145
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 49 NIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77
+++ +D+ G+++GA +G+G G Q +A R
Sbjct: 70 HVEFVDIAGLVKGAHKGEGLGNQFLAHIR 98
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 41 GVIEYKGANIQLLDLPGIIEGAAQGKGR--GRQVIAVARTADLVLMMLDAT 89
G EY G +++DLPG+ A R I + DLV+ ++DAT
Sbjct: 47 GEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYI-INEKPDLVVNIVDAT 96
>pdb|2HAG|A Chain A, Crystal Structure Of A Putative Dyp-Type Peroxidase
Protein (So_0740) From Shewanella Oneidensis At 2.75 A
Resolution
pdb|2IIZ|A Chain A, Crystal Structure Of Putative Melanin Biosynthesis Protein
Tyra With Bound Heme (Np_716371.1) From Shewanella
Oneidensis At 2.30 A Resolution
Length = 312
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 54 DLPGIIEGAAQGKGRGRQVIAVARTAD 80
DL G ++G KGR RQ +A+ + D
Sbjct: 146 DLTGFVDGTENPKGRHRQEVALVGSED 172
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 41 GVIEYKGANIQLLDLPGIIEGAAQGKGR--GRQVIAVARTADLVLMMLDAT 89
G EY G +++DLPG+ A R I + DLV+ ++DAT
Sbjct: 44 GEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYI-INEKPDLVVNIVDAT 93
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 41 GVIEYKGANIQLLDLPGIIEGAAQGKGR--GRQVIAVARTADLVLMMLDAT 89
G EY G +++DLPG+ A R I + DLV+ ++DAT
Sbjct: 43 GEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYI-INEKPDLVVNIVDAT 92
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 41 GVIEYKGANIQLLDLPGIIEGAAQGKGR--GRQVIAVARTADLVLMMLDAT 89
G EY G +++DLPG+ A R I + DLV+ ++DAT
Sbjct: 43 GEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYI-INEKPDLVVNIVDAT 92
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 29 ASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEG--AAQGKGRGRQVIAVARTADLVLMML 86
ASY FTT G E Q++D PG+++ + + + + ++A+ +L++ +
Sbjct: 195 ASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIF 254
Query: 87 DATKQ 91
D ++
Sbjct: 255 DPSEH 259
>pdb|3BUL|A Chain A, E. Coli I690cG743C METH C-Terminal Fragment (649-1227)
pdb|3IV9|A Chain A, Structure Of The B12-Dependent Methionine Synthase (Meth)
C-Teminal Half In A "his-On" Conformation
pdb|3IVA|A Chain A, Structure Of The B12-Dependent Methionine Synthase (Meth)
C-Teminal Half With Adohcy Bound
Length = 579
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 76 ARTADLVLMMLDATKQDVQRGLLEKELESVGIRLNKKKP 114
+RT +V +L T++D KE E+V I+ +KKP
Sbjct: 213 SRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKP 251
>pdb|1K7Y|A Chain A, E. Coli Meth C-Terminal Fragment (649-1227)
pdb|1K98|A Chain A, Adomet Complex Of Meth C-Terminal Fragment
Length = 577
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 76 ARTADLVLMMLDATKQDVQRGLLEKELESVGIRLNKKKP 114
+RT +V +L T++D KE E+V I+ +KKP
Sbjct: 211 SRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKP 249
>pdb|2AAC|A Chain A, Escherchia Coli Gene Regulatory Protein Arac Complexed
With D-Fucose
pdb|2AAC|B Chain B, Escherchia Coli Gene Regulatory Protein Arac Complexed
With D-Fucose
Length = 177
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQDVQ 94
DL G I A QG+GR +++A+ L+L ++A + +
Sbjct: 128 HFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLH 171
>pdb|1XJA|A Chain A, Apo Form Of The Y31v Mutant Dimerization Domain Fragment
Of Escherichia Coli Regulatory Protein Arac
pdb|1XJA|B Chain B, Apo Form Of The Y31v Mutant Dimerization Domain Fragment
Of Escherichia Coli Regulatory Protein Arac
pdb|1XJA|C Chain C, Apo Form Of The Y31v Mutant Dimerization Domain Fragment
Of Escherichia Coli Regulatory Protein Arac
pdb|1XJA|D Chain D, Apo Form Of The Y31v Mutant Dimerization Domain Fragment
Of Escherichia Coli Regulatory Protein Arac
pdb|1XJA|E Chain E, Apo Form Of The Y31v Mutant Dimerization Domain Fragment
Of Escherichia Coli Regulatory Protein Arac
Length = 178
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQDVQ 94
DL G I A QG+GR +++A+ L+L ++A + +
Sbjct: 129 HFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLH 172
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 48 ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQD 92
A + ++D+ G+++GA G+G G ++ D + + A + D
Sbjct: 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,662,916
Number of Sequences: 62578
Number of extensions: 86819
Number of successful extensions: 184
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 33
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)