Query psy6249
Match_columns 119
No_of_seqs 139 out of 1102
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 21:31:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1163 DRG Predicted GTPase [ 100.0 2.1E-28 4.5E-33 174.2 9.1 118 2-119 64-181 (365)
2 PRK12299 obgE GTPase CgtA; Rev 99.9 2.6E-25 5.6E-30 161.9 13.4 117 2-118 159-278 (335)
3 KOG1486|consensus 99.9 3.2E-26 6.8E-31 158.9 7.5 118 2-119 63-180 (364)
4 COG0012 Predicted GTPase, prob 99.9 4.8E-26 1E-30 165.0 8.5 106 1-106 2-137 (372)
5 KOG1489|consensus 99.9 8.4E-26 1.8E-30 160.5 9.4 118 2-119 197-320 (366)
6 COG0536 Obg Predicted GTPase [ 99.9 1E-25 2.2E-30 161.4 9.0 117 3-119 161-283 (369)
7 cd01896 DRG The developmentall 99.9 2.3E-24 5E-29 150.1 13.8 116 3-118 2-117 (233)
8 PRK12296 obgE GTPase CgtA; Rev 99.9 1E-24 2.2E-29 164.8 12.5 106 2-107 160-271 (500)
9 cd01900 YchF YchF subfamily. 99.9 3.2E-25 7E-30 157.3 9.1 107 4-110 1-136 (274)
10 PRK12297 obgE GTPase CgtA; Rev 99.9 1.8E-24 4E-29 161.2 13.3 117 2-118 159-281 (424)
11 PTZ00258 GTP-binding protein; 99.9 4.8E-25 1E-29 162.5 9.7 107 2-108 22-157 (390)
12 PRK09601 GTP-binding protein Y 99.9 8.1E-25 1.8E-29 159.9 10.1 108 2-109 3-139 (364)
13 TIGR02729 Obg_CgtA Obg family 99.9 2.5E-24 5.3E-29 156.5 12.3 117 2-118 158-280 (329)
14 PF02421 FeoB_N: Ferrous iron 99.9 3.1E-24 6.7E-29 141.0 10.1 105 2-108 1-107 (156)
15 PRK12298 obgE GTPase CgtA; Rev 99.9 4.9E-24 1.1E-28 157.8 12.3 116 3-118 161-282 (390)
16 PRK09602 translation-associate 99.9 3E-24 6.4E-29 159.2 10.8 109 1-109 1-148 (396)
17 cd01899 Ygr210 Ygr210 subfamil 99.9 2.9E-23 6.4E-28 150.1 10.0 103 4-106 1-142 (318)
18 KOG1491|consensus 99.9 1.6E-23 3.4E-28 150.0 8.4 109 2-110 21-158 (391)
19 cd01898 Obg Obg subfamily. Th 99.9 2.5E-22 5.5E-27 132.4 12.3 114 3-116 2-119 (170)
20 COG1084 Predicted GTPase [Gene 99.9 2.2E-22 4.7E-27 143.7 11.7 106 1-106 168-280 (346)
21 TIGR00092 GTP-binding protein 99.9 1.3E-22 2.8E-27 148.5 8.8 107 2-108 3-139 (368)
22 PF01926 MMR_HSR1: 50S ribosom 99.9 2.4E-21 5.3E-26 121.3 10.9 100 3-102 1-104 (116)
23 COG1159 Era GTPase [General fu 99.9 4.6E-21 1E-25 135.6 11.5 89 3-91 8-98 (298)
24 COG1160 Predicted GTPases [Gen 99.9 5.4E-21 1.2E-25 141.5 11.3 104 2-105 4-111 (444)
25 COG0370 FeoB Fe2+ transport sy 99.8 2.4E-20 5.3E-25 143.2 11.8 101 1-102 3-105 (653)
26 TIGR00436 era GTP-binding prot 99.8 7.7E-20 1.7E-24 129.8 12.6 102 3-104 2-105 (270)
27 cd01881 Obg_like The Obg-like 99.8 3.4E-20 7.5E-25 122.5 9.9 86 6-91 1-87 (176)
28 TIGR03156 GTP_HflX GTP-binding 99.8 8.7E-20 1.9E-24 133.7 12.7 104 2-105 190-297 (351)
29 KOG1487|consensus 99.8 1.8E-20 3.8E-25 130.8 5.9 117 3-119 61-177 (358)
30 PRK11058 GTPase HflX; Provisio 99.8 6.9E-19 1.5E-23 131.7 12.4 104 2-105 198-305 (426)
31 cd01897 NOG NOG1 is a nucleola 99.8 1.9E-18 4.1E-23 113.7 12.5 90 2-91 1-92 (168)
32 COG0486 ThdF Predicted GTPase 99.8 1.7E-18 3.7E-23 128.6 12.5 90 2-91 218-309 (454)
33 PRK15494 era GTPase Era; Provi 99.8 4E-18 8.7E-23 124.5 13.1 93 2-94 53-147 (339)
34 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 5.6E-18 1.2E-22 115.0 11.8 110 2-111 1-117 (196)
35 cd01861 Rab6 Rab6 subfamily. 99.8 1.8E-17 3.9E-22 108.3 13.1 95 2-104 1-97 (161)
36 TIGR03594 GTPase_EngA ribosome 99.8 7.7E-18 1.7E-22 125.9 12.5 103 3-105 1-106 (429)
37 cd01878 HflX HflX subfamily. 99.8 1.2E-17 2.6E-22 113.6 12.2 104 2-105 42-149 (204)
38 PRK00093 GTP-binding protein D 99.8 1E-17 2.2E-22 125.6 12.9 105 1-105 1-108 (435)
39 PRK03003 GTP-binding protein D 99.8 1.7E-17 3.7E-22 125.8 13.5 104 1-104 38-144 (472)
40 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2.3E-17 5E-22 124.1 13.3 91 2-92 204-296 (442)
41 PRK09554 feoB ferrous iron tra 99.8 2.2E-17 4.8E-22 130.9 13.6 104 2-106 4-112 (772)
42 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 4.6E-17 1E-21 107.1 12.9 95 2-104 3-99 (166)
43 cd01866 Rab2 Rab2 subfamily. 99.8 4.6E-17 1E-21 107.6 12.9 94 2-103 5-100 (168)
44 PRK00089 era GTPase Era; Revie 99.8 2.2E-17 4.7E-22 118.2 12.1 89 3-91 7-97 (292)
45 smart00175 RAB Rab subfamily o 99.8 6.6E-17 1.4E-21 105.7 13.3 93 2-102 1-95 (164)
46 cd04161 Arl2l1_Arl13_like Arl2 99.7 6.1E-17 1.3E-21 107.2 13.0 91 3-104 1-91 (167)
47 cd01865 Rab3 Rab3 subfamily. 99.7 6.1E-17 1.3E-21 106.7 12.9 96 1-104 1-98 (165)
48 cd01868 Rab11_like Rab11-like. 99.7 6.2E-17 1.3E-21 106.3 12.6 94 2-103 4-99 (165)
49 COG2262 HflX GTPases [General 99.7 2.6E-17 5.6E-22 120.7 11.6 105 2-106 193-301 (411)
50 cd01867 Rab8_Rab10_Rab13_like 99.7 8.7E-17 1.9E-21 106.1 12.6 95 2-104 4-100 (167)
51 cd04171 SelB SelB subfamily. 99.7 1.5E-16 3.3E-21 103.8 12.8 83 2-91 1-87 (164)
52 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.2E-16 2.5E-21 105.1 12.2 92 3-102 1-96 (167)
53 cd04158 ARD1 ARD1 subfamily. 99.7 1.3E-16 2.9E-21 105.6 12.4 91 3-104 1-91 (169)
54 smart00178 SAR Sar1p-like memb 99.7 1.7E-16 3.8E-21 106.6 13.1 90 2-102 18-107 (184)
55 cd01864 Rab19 Rab19 subfamily. 99.7 1.7E-16 3.7E-21 104.4 12.8 93 2-102 4-98 (165)
56 cd04164 trmE TrmE (MnmE, ThdF, 99.7 2.5E-16 5.4E-21 101.9 13.4 90 2-91 2-93 (157)
57 cd01894 EngA1 EngA1 subfamily. 99.7 6.8E-17 1.5E-21 104.7 10.7 87 5-91 1-89 (157)
58 PRK05291 trmE tRNA modificatio 99.7 7.6E-17 1.6E-21 121.6 12.5 90 2-91 216-307 (449)
59 cd01853 Toc34_like Toc34-like 99.7 1.1E-16 2.3E-21 112.6 12.3 112 1-112 31-151 (249)
60 cd04157 Arl6 Arl6 subfamily. 99.7 1.9E-16 4E-21 103.4 12.5 81 3-91 1-81 (162)
61 cd04142 RRP22 RRP22 subfamily. 99.7 1.6E-16 3.4E-21 108.3 12.6 98 2-100 1-101 (198)
62 cd00154 Rab Rab family. Rab G 99.7 2.7E-16 6E-21 101.4 13.2 93 2-102 1-95 (159)
63 cd04113 Rab4 Rab4 subfamily. 99.7 2.4E-16 5.3E-21 103.1 13.0 94 2-103 1-96 (161)
64 cd01879 FeoB Ferrous iron tran 99.7 7.8E-17 1.7E-21 104.7 10.5 87 6-93 1-89 (158)
65 PRK09518 bifunctional cytidyla 99.7 1.4E-16 3.1E-21 125.8 13.9 103 2-104 276-381 (712)
66 cd04109 Rab28 Rab28 subfamily. 99.7 2.8E-16 6E-21 108.1 13.6 83 2-91 1-86 (215)
67 cd04120 Rab12 Rab12 subfamily. 99.7 2.4E-16 5.2E-21 107.8 13.2 94 2-103 1-96 (202)
68 cd04150 Arf1_5_like Arf1-Arf5- 99.7 2.4E-16 5.2E-21 103.6 12.7 90 2-102 1-90 (159)
69 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 2.8E-16 6E-21 104.6 13.1 90 2-102 16-105 (174)
70 cd04122 Rab14 Rab14 subfamily. 99.7 2.7E-16 5.8E-21 103.6 12.9 92 2-103 3-98 (166)
71 COG0218 Predicted GTPase [Gene 99.7 8.4E-17 1.8E-21 108.6 10.5 104 2-108 25-137 (200)
72 KOG0073|consensus 99.7 1.3E-16 2.8E-21 104.3 10.8 81 1-91 16-96 (185)
73 PLN00223 ADP-ribosylation fact 99.7 3E-16 6.6E-21 105.4 13.0 93 2-105 18-110 (181)
74 PF00025 Arf: ADP-ribosylation 99.7 9.5E-17 2.1E-21 107.3 10.4 104 2-116 15-119 (175)
75 cd00879 Sar1 Sar1 subfamily. 99.7 4.2E-16 9.1E-21 104.7 13.5 80 2-91 20-99 (190)
76 cd04149 Arf6 Arf6 subfamily. 99.7 2.9E-16 6.3E-21 104.2 12.5 90 2-102 10-99 (168)
77 cd04119 RJL RJL (RabJ-Like) su 99.7 4.9E-16 1.1E-20 101.7 13.3 83 2-91 1-85 (168)
78 cd04127 Rab27A Rab27a subfamil 99.7 4.3E-16 9.3E-21 103.7 13.0 95 2-104 5-111 (180)
79 cd04163 Era Era subfamily. Er 99.7 3.8E-16 8.3E-21 101.4 12.5 104 1-104 3-109 (168)
80 cd01895 EngA2 EngA2 subfamily. 99.7 6E-16 1.3E-20 101.4 12.8 91 1-91 2-97 (174)
81 smart00177 ARF ARF-like small 99.7 6.5E-16 1.4E-20 103.1 12.9 91 2-103 14-104 (175)
82 cd04106 Rab23_lke Rab23-like s 99.7 5.8E-16 1.3E-20 101.2 12.4 95 2-104 1-99 (162)
83 KOG1423|consensus 99.7 1.6E-16 3.5E-21 113.1 10.4 90 2-91 73-168 (379)
84 cd04112 Rab26 Rab26 subfamily. 99.7 5.4E-16 1.2E-20 104.7 12.6 93 2-102 1-96 (191)
85 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 5.3E-16 1.1E-20 105.5 12.5 90 2-99 1-93 (201)
86 cd04154 Arl2 Arl2 subfamily. 99.7 8.2E-16 1.8E-20 102.1 13.1 80 2-91 15-94 (173)
87 KOG0070|consensus 99.7 4.9E-17 1.1E-21 108.0 7.0 105 1-116 17-122 (181)
88 cd01860 Rab5_related Rab5-rela 99.7 9.4E-16 2E-20 100.3 13.1 94 1-102 1-96 (163)
89 cd04151 Arl1 Arl1 subfamily. 99.7 7.1E-16 1.5E-20 100.9 12.4 79 3-91 1-79 (158)
90 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 6.9E-16 1.5E-20 101.3 12.3 83 2-91 1-86 (168)
91 KOG1191|consensus 99.7 1.9E-16 4.1E-21 118.2 10.6 87 2-88 269-358 (531)
92 cd00878 Arf_Arl Arf (ADP-ribos 99.7 8.8E-16 1.9E-20 100.1 12.6 79 3-91 1-79 (158)
93 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 6.1E-16 1.3E-20 102.2 11.9 92 3-104 1-92 (164)
94 PRK00093 GTP-binding protein D 99.7 7.5E-16 1.6E-20 115.6 13.8 90 2-91 174-268 (435)
95 cd04117 Rab15 Rab15 subfamily. 99.7 1.1E-15 2.3E-20 100.6 12.7 93 2-104 1-97 (161)
96 cd04125 RabA_like RabA-like su 99.7 1.1E-15 2.5E-20 102.7 13.0 95 2-104 1-97 (188)
97 cd04123 Rab21 Rab21 subfamily. 99.7 1.3E-15 2.9E-20 99.0 12.9 83 2-91 1-85 (162)
98 PTZ00133 ADP-ribosylation fact 99.7 1E-15 2.2E-20 102.9 12.6 91 2-103 18-108 (182)
99 COG1160 Predicted GTPases [Gen 99.7 3.7E-16 8E-21 116.0 11.2 90 2-91 179-273 (444)
100 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1.5E-15 3.2E-20 100.6 13.1 93 2-102 3-98 (170)
101 cd04114 Rab30 Rab30 subfamily. 99.7 1.4E-15 3.1E-20 100.0 12.9 83 2-91 8-92 (169)
102 cd01863 Rab18 Rab18 subfamily. 99.7 1.4E-15 3.1E-20 99.3 12.8 83 2-91 1-85 (161)
103 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.3E-15 2.8E-20 99.6 12.6 82 2-91 3-86 (164)
104 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.6E-15 3.6E-20 98.6 13.0 83 1-91 1-85 (162)
105 cd04159 Arl10_like Arl10-like 99.7 1.5E-15 3.3E-20 98.0 12.6 80 3-91 1-80 (159)
106 cd04136 Rap_like Rap-like subf 99.7 1.1E-15 2.4E-20 99.9 12.0 83 1-91 1-85 (163)
107 TIGR03594 GTPase_EngA ribosome 99.7 1.2E-15 2.5E-20 114.2 13.4 90 2-91 173-267 (429)
108 TIGR03598 GTPase_YsxC ribosome 99.7 9E-16 1.9E-20 102.7 11.5 88 1-91 18-113 (179)
109 PRK03003 GTP-binding protein D 99.7 1.1E-15 2.4E-20 115.9 13.3 90 2-91 212-306 (472)
110 cd01862 Rab7 Rab7 subfamily. 99.7 3.8E-15 8.2E-20 98.1 14.2 83 2-91 1-85 (172)
111 cd04111 Rab39 Rab39 subfamily. 99.7 1.4E-15 3.1E-20 104.4 12.6 96 1-104 2-100 (211)
112 cd04124 RabL2 RabL2 subfamily. 99.7 1.9E-15 4.1E-20 99.3 12.6 81 2-91 1-85 (161)
113 cd04110 Rab35 Rab35 subfamily. 99.7 1.6E-15 3.5E-20 103.1 12.6 94 2-103 7-102 (199)
114 cd04144 Ras2 Ras2 subfamily. 99.7 1.4E-15 3.1E-20 102.6 12.1 81 3-91 1-83 (190)
115 cd04175 Rap1 Rap1 subgroup. T 99.7 2E-15 4.4E-20 99.0 12.5 92 1-101 1-94 (164)
116 PF04548 AIG1: AIG1 family; I 99.7 6.9E-16 1.5E-20 106.1 10.6 111 2-112 1-118 (212)
117 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 2.2E-15 4.7E-20 101.2 12.6 82 2-91 4-88 (183)
118 TIGR00991 3a0901s02IAP34 GTP-b 99.7 1.4E-15 3E-20 109.3 12.2 112 1-112 38-155 (313)
119 PLN03110 Rab GTPase; Provision 99.7 2.9E-15 6.2E-20 103.2 13.3 95 2-104 13-109 (216)
120 KOG0075|consensus 99.7 1.6E-16 3.4E-21 102.4 6.3 108 1-118 20-128 (186)
121 cd04121 Rab40 Rab40 subfamily. 99.7 3.6E-15 7.7E-20 101.0 13.1 108 2-118 7-116 (189)
122 COG3596 Predicted GTPase [Gene 99.7 1.5E-16 3.3E-21 111.7 6.5 90 2-91 40-130 (296)
123 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 4.5E-15 9.8E-20 98.6 13.2 92 3-102 2-95 (170)
124 PLN03108 Rab family protein; P 99.7 3.7E-15 8.1E-20 102.2 13.0 83 2-91 7-91 (210)
125 cd04156 ARLTS1 ARLTS1 subfamil 99.7 4.4E-15 9.6E-20 96.9 12.2 79 3-91 1-80 (160)
126 PRK09518 bifunctional cytidyla 99.7 2.9E-15 6.3E-20 118.4 13.3 90 2-91 451-545 (712)
127 cd00876 Ras Ras family. The R 99.7 3.7E-15 8.1E-20 96.7 11.7 81 3-91 1-83 (160)
128 PTZ00369 Ras-like protein; Pro 99.6 5.6E-15 1.2E-19 99.6 12.5 83 1-91 5-89 (189)
129 cd04101 RabL4 RabL4 (Rab-like4 99.6 7.2E-15 1.6E-19 96.2 12.5 83 2-91 1-88 (164)
130 cd04116 Rab9 Rab9 subfamily. 99.6 1.5E-14 3.2E-19 95.4 14.0 83 2-91 6-90 (170)
131 cd04176 Rap2 Rap2 subgroup. T 99.6 5.6E-15 1.2E-19 96.8 11.8 83 1-91 1-85 (163)
132 smart00173 RAS Ras subfamily o 99.6 3.7E-15 8.1E-20 97.6 10.9 82 2-91 1-84 (164)
133 cd04155 Arl3 Arl3 subfamily. 99.6 9.5E-15 2.1E-19 96.5 12.7 80 2-91 15-94 (173)
134 cd04126 Rab20 Rab20 subfamily. 99.6 5.5E-15 1.2E-19 102.3 11.9 87 2-99 1-87 (220)
135 cd04118 Rab24 Rab24 subfamily. 99.6 9.6E-15 2.1E-19 98.4 12.6 93 2-102 1-96 (193)
136 KOG0084|consensus 99.6 7E-15 1.5E-19 98.7 11.4 107 2-118 10-120 (205)
137 cd04132 Rho4_like Rho4-like su 99.6 1E-14 2.2E-19 97.8 12.1 82 2-91 1-85 (187)
138 TIGR00437 feoB ferrous iron tr 99.6 7.3E-15 1.6E-19 114.0 12.7 91 8-99 1-93 (591)
139 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.5E-14 3.1E-19 97.3 12.6 91 2-102 1-95 (182)
140 cd01874 Cdc42 Cdc42 subfamily. 99.6 1.1E-14 2.4E-19 97.2 11.9 82 2-91 2-85 (175)
141 cd04147 Ras_dva Ras-dva subfam 99.6 9.1E-15 2E-19 99.3 11.6 81 3-91 1-83 (198)
142 cd00880 Era_like Era (E. coli 99.6 1.1E-14 2.4E-19 93.4 11.4 88 6-93 1-90 (163)
143 cd04140 ARHI_like ARHI subfami 99.6 1.3E-14 2.7E-19 95.6 11.9 82 2-91 2-85 (165)
144 cd04146 RERG_RasL11_like RERG/ 99.6 6.3E-15 1.4E-19 96.9 9.9 89 3-99 1-91 (165)
145 cd04177 RSR1 RSR1 subgroup. R 99.6 2E-14 4.3E-19 94.9 11.8 83 1-91 1-85 (168)
146 cd00881 GTP_translation_factor 99.6 1.8E-14 4E-19 95.9 11.8 82 3-91 1-98 (189)
147 cd00877 Ran Ran (Ras-related n 99.6 2.2E-14 4.8E-19 94.9 12.0 90 2-101 1-94 (166)
148 cd04166 CysN_ATPS CysN_ATPS su 99.6 8.6E-15 1.9E-19 100.3 10.3 82 3-91 1-113 (208)
149 cd01892 Miro2 Miro2 subfamily. 99.6 2.1E-14 4.6E-19 95.2 11.8 95 2-104 5-102 (169)
150 PRK00454 engB GTP-binding prot 99.6 1.6E-14 3.4E-19 97.3 11.4 88 2-92 25-120 (196)
151 cd04105 SR_beta Signal recogni 99.6 2.1E-14 4.5E-19 98.2 12.0 90 2-101 1-95 (203)
152 PLN03118 Rab family protein; P 99.6 2.1E-14 4.5E-19 98.4 11.8 82 2-91 15-98 (211)
153 cd01893 Miro1 Miro1 subfamily. 99.6 1.7E-14 3.7E-19 95.1 10.9 81 2-91 1-83 (166)
154 TIGR00231 small_GTP small GTP- 99.6 3.1E-14 6.6E-19 91.3 11.8 84 1-91 1-86 (161)
155 cd00157 Rho Rho (Ras homology) 99.6 3.5E-14 7.6E-19 93.4 12.2 82 2-91 1-84 (171)
156 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 4.9E-14 1.1E-18 93.8 12.6 82 2-91 3-86 (172)
157 cd01891 TypA_BipA TypA (tyrosi 99.6 3.5E-14 7.5E-19 96.1 11.9 83 2-91 3-101 (194)
158 PRK15467 ethanolamine utilizat 99.6 8E-15 1.7E-19 96.6 8.4 78 1-92 1-78 (158)
159 PLN03071 GTP-binding nuclear p 99.6 4.2E-14 9.1E-19 97.7 12.3 91 2-102 14-108 (219)
160 PRK04213 GTP-binding protein; 99.6 1.4E-14 3.1E-19 98.2 9.8 86 2-91 10-103 (201)
161 cd01871 Rac1_like Rac1-like su 99.6 4.6E-14 9.9E-19 94.1 12.0 88 2-98 2-91 (174)
162 cd01889 SelB_euk SelB subfamil 99.6 3.4E-14 7.3E-19 96.0 11.2 83 2-91 1-104 (192)
163 KOG0071|consensus 99.6 2.4E-14 5.2E-19 91.8 9.6 94 1-105 17-110 (180)
164 KOG0074|consensus 99.6 2.2E-14 4.8E-19 92.1 9.3 90 1-102 17-108 (185)
165 TIGR00993 3a0901s04IAP86 chlor 99.6 4.3E-14 9.2E-19 109.6 12.6 112 2-113 119-239 (763)
166 cd04143 Rhes_like Rhes_like su 99.6 5.7E-14 1.2E-18 98.7 12.1 82 2-91 1-84 (247)
167 cd04102 RabL3 RabL3 (Rab-like3 99.6 1.1E-13 2.4E-18 94.7 12.7 90 2-101 1-99 (202)
168 cd04137 RheB Rheb (Ras Homolog 99.6 9.7E-14 2.1E-18 92.4 12.2 82 2-91 2-85 (180)
169 cd04130 Wrch_1 Wrch-1 subfamil 99.6 5.5E-14 1.2E-18 93.2 10.9 82 2-91 1-84 (173)
170 cd01886 EF-G Elongation factor 99.6 7.1E-14 1.5E-18 99.4 11.9 97 3-106 1-116 (270)
171 cd04135 Tc10 TC10 subfamily. 99.6 7.9E-14 1.7E-18 92.2 10.9 82 2-91 1-84 (174)
172 PF08477 Miro: Miro-like prote 99.6 2.6E-14 5.6E-19 89.3 7.9 88 3-98 1-92 (119)
173 cd04148 RGK RGK subfamily. Th 99.6 1.5E-13 3.2E-18 95.1 12.4 89 2-101 1-94 (221)
174 cd04169 RF3 RF3 subfamily. Pe 99.6 1.6E-13 3.5E-18 97.4 12.8 83 2-91 3-107 (267)
175 KOG1490|consensus 99.6 6.2E-15 1.4E-19 110.6 5.7 88 2-91 169-260 (620)
176 cd04139 RalA_RalB RalA/RalB su 99.6 2.2E-13 4.7E-18 88.8 12.4 82 2-91 1-84 (164)
177 PF00071 Ras: Ras family; Int 99.6 6.4E-14 1.4E-18 91.6 9.8 94 3-104 1-96 (162)
178 cd01875 RhoG RhoG subfamily. 99.5 2E-13 4.3E-18 92.3 12.4 87 2-98 4-93 (191)
179 smart00174 RHO Rho (Ras homolo 99.5 1.1E-13 2.5E-18 91.4 11.0 80 4-91 1-82 (174)
180 cd04131 Rnd Rnd subfamily. Th 99.5 1.7E-13 3.7E-18 91.9 11.8 82 2-91 2-85 (178)
181 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 1.7E-13 3.7E-18 95.0 12.1 89 1-98 1-91 (222)
182 PF09439 SRPRB: Signal recogni 99.5 7.2E-15 1.6E-19 98.7 4.9 106 2-118 4-117 (181)
183 cd04168 TetM_like Tet(M)-like 99.5 1.9E-13 4E-18 95.6 11.9 97 3-106 1-116 (237)
184 PF00350 Dynamin_N: Dynamin fa 99.5 1.2E-13 2.6E-18 91.1 10.4 52 48-102 101-154 (168)
185 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 3E-13 6.5E-18 91.1 12.5 81 2-91 6-89 (182)
186 cd04170 EF-G_bact Elongation f 99.5 1.8E-13 4E-18 97.0 11.9 97 3-106 1-116 (268)
187 cd01890 LepA LepA subfamily. 99.5 2.6E-13 5.6E-18 90.1 11.5 82 3-91 2-103 (179)
188 cd04134 Rho3 Rho3 subfamily. 99.5 2.8E-13 6.1E-18 91.3 10.7 81 2-91 1-84 (189)
189 TIGR02528 EutP ethanolamine ut 99.5 1.1E-13 2.5E-18 88.8 8.2 77 2-93 1-77 (142)
190 TIGR00487 IF-2 translation ini 99.5 5E-13 1.1E-17 103.7 13.0 83 2-91 88-171 (587)
191 cd01876 YihA_EngB The YihA (En 99.5 2.7E-13 5.9E-18 88.2 9.9 101 3-106 1-110 (170)
192 cd01884 EF_Tu EF-Tu subfamily. 99.5 3.8E-13 8.3E-18 91.5 10.9 99 2-107 3-118 (195)
193 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 8.2E-13 1.8E-17 92.1 12.7 82 2-91 14-97 (232)
194 cd01870 RhoA_like RhoA-like su 99.5 4.4E-13 9.6E-18 88.7 10.7 82 2-91 2-85 (175)
195 PLN00023 GTP-binding protein; 99.5 1E-12 2.2E-17 95.2 13.2 94 2-104 22-134 (334)
196 cd04133 Rop_like Rop subfamily 99.5 1E-12 2.2E-17 88.1 12.2 81 2-91 2-85 (176)
197 cd04103 Centaurin_gamma Centau 99.5 1E-12 2.2E-17 86.4 11.9 85 2-101 1-87 (158)
198 KOG0410|consensus 99.5 1.5E-13 3.2E-18 98.8 8.4 106 2-107 179-288 (410)
199 cd04178 Nucleostemin_like Nucl 99.5 8.9E-14 1.9E-18 93.0 6.8 54 2-58 118-172 (172)
200 PRK12317 elongation factor 1-a 99.5 3.2E-13 7E-18 101.3 10.2 82 2-90 7-119 (425)
201 PRK05306 infB translation init 99.5 1.1E-12 2.3E-17 104.4 13.0 83 2-91 291-373 (787)
202 PF00009 GTP_EFTU: Elongation 99.5 3.6E-13 7.9E-18 90.8 8.9 100 2-108 4-124 (188)
203 cd01858 NGP_1 NGP-1. Autoanti 99.5 1.7E-13 3.8E-18 89.9 6.5 54 2-58 103-157 (157)
204 TIGR00475 selB selenocysteine- 99.5 1.7E-12 3.8E-17 100.7 12.9 83 2-91 1-86 (581)
205 COG1100 GTPase SAR1 and relate 99.5 1.9E-12 4.1E-17 88.6 11.7 85 2-94 6-93 (219)
206 cd00882 Ras_like_GTPase Ras-li 99.5 1.3E-12 2.9E-17 82.6 9.9 79 6-91 1-81 (157)
207 KOG0090|consensus 99.4 6.2E-13 1.3E-17 90.6 8.4 107 2-118 39-150 (238)
208 smart00176 RAN Ran (Ras-relate 99.4 3E-12 6.5E-17 87.5 11.4 76 7-91 1-80 (200)
209 TIGR00484 EF-G translation elo 99.4 2.2E-12 4.7E-17 101.9 12.0 83 2-91 11-111 (689)
210 cd04104 p47_IIGP_like p47 (47- 99.4 1.9E-12 4.1E-17 88.0 10.2 83 1-89 1-91 (197)
211 CHL00189 infB translation init 99.4 2.5E-12 5.5E-17 101.7 12.2 83 2-91 245-331 (742)
212 CHL00071 tufA elongation facto 99.4 2.8E-12 6E-17 96.0 11.5 98 2-106 13-127 (409)
213 KOG0080|consensus 99.4 3.1E-12 6.8E-17 83.9 10.0 95 2-105 12-112 (209)
214 PRK12739 elongation factor G; 99.4 2.6E-12 5.6E-17 101.5 11.6 98 2-106 9-125 (691)
215 cd01888 eIF2_gamma eIF2-gamma 99.4 5.4E-12 1.2E-16 86.2 11.5 82 3-91 2-119 (203)
216 PTZ00132 GTP-binding nuclear p 99.4 9.3E-12 2E-16 85.4 12.6 81 2-91 10-94 (215)
217 KOG0078|consensus 99.4 7.8E-12 1.7E-16 84.8 11.9 109 2-118 13-123 (207)
218 KOG0094|consensus 99.4 6.2E-12 1.4E-16 84.6 11.0 93 2-104 23-119 (221)
219 cd01883 EF1_alpha Eukaryotic e 99.4 3.3E-12 7.1E-17 88.2 9.9 82 3-91 1-113 (219)
220 PRK09563 rbgA GTPase YlqF; Rev 99.4 1.6E-12 3.5E-17 93.2 8.6 61 2-65 122-183 (287)
221 KOG0077|consensus 99.4 1.2E-12 2.5E-17 86.1 7.0 81 3-93 22-102 (193)
222 cd01849 YlqF_related_GTPase Yl 99.4 9.1E-13 2E-17 86.4 6.6 54 2-58 101-155 (155)
223 cd04129 Rho2 Rho2 subfamily. 99.4 1.1E-11 2.4E-16 83.3 11.7 82 2-91 2-85 (187)
224 PRK10218 GTP-binding protein; 99.4 9.7E-12 2.1E-16 96.9 12.8 83 2-91 6-104 (607)
225 cd01855 YqeH YqeH. YqeH is an 99.4 6E-13 1.3E-17 89.8 5.4 54 2-58 128-190 (190)
226 KOG0394|consensus 99.4 2.8E-12 6.1E-17 85.6 8.4 108 2-118 10-124 (210)
227 KOG0095|consensus 99.4 6E-12 1.3E-16 81.7 9.5 95 2-105 8-108 (213)
228 PRK00007 elongation factor G; 99.4 6.5E-12 1.4E-16 99.3 11.7 97 3-106 12-127 (693)
229 TIGR03596 GTPase_YlqF ribosome 99.4 2.2E-12 4.9E-17 92.0 8.3 59 2-63 119-178 (276)
230 TIGR00491 aIF-2 translation in 99.4 9.1E-12 2E-16 96.7 12.2 83 2-91 5-105 (590)
231 PRK12735 elongation factor Tu; 99.4 8.2E-12 1.8E-16 93.1 11.4 98 2-106 13-127 (396)
232 KOG0092|consensus 99.4 8.1E-12 1.8E-16 83.7 10.1 92 2-103 6-101 (200)
233 TIGR01394 TypA_BipA GTP-bindin 99.4 1.3E-11 2.8E-16 96.1 12.7 98 2-106 2-116 (594)
234 COG1161 Predicted GTPases [Gen 99.4 1.4E-12 3.1E-17 94.8 6.5 59 2-63 133-192 (322)
235 KOG0098|consensus 99.4 2E-11 4.3E-16 81.7 11.4 93 2-104 7-103 (216)
236 cd04167 Snu114p Snu114p subfam 99.4 1.4E-11 3E-16 84.7 10.9 82 3-91 2-107 (213)
237 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 5.8E-12 1.2E-16 87.8 9.1 98 3-102 1-102 (232)
238 PRK00741 prfC peptide chain re 99.4 1.4E-11 3.1E-16 94.6 12.0 97 2-105 11-130 (526)
239 cd01857 HSR1_MMR1 HSR1/MMR1. 99.4 2.5E-12 5.4E-17 83.1 6.7 54 3-59 85-139 (141)
240 TIGR00503 prfC peptide chain r 99.4 2.2E-11 4.8E-16 93.7 12.7 95 2-103 12-129 (527)
241 cd01873 RhoBTB RhoBTB subfamil 99.4 7E-12 1.5E-16 85.3 8.9 80 2-91 3-100 (195)
242 cd01851 GBP Guanylate-binding 99.4 1.3E-11 2.7E-16 85.8 10.3 96 3-99 9-112 (224)
243 cd01850 CDC_Septin CDC/Septin. 99.3 2.9E-11 6.3E-16 86.3 12.0 61 2-62 5-77 (276)
244 TIGR00483 EF-1_alpha translati 99.3 5.4E-12 1.2E-16 94.8 8.3 83 2-91 8-121 (426)
245 PRK00049 elongation factor Tu; 99.3 2E-11 4.2E-16 91.1 11.2 98 2-106 13-127 (396)
246 PF10662 PduV-EutP: Ethanolami 99.3 8.1E-12 1.8E-16 80.9 8.0 75 1-90 1-75 (143)
247 PLN03127 Elongation factor Tu; 99.3 2.9E-11 6.4E-16 91.4 12.1 98 2-106 62-176 (447)
248 PRK05506 bifunctional sulfate 99.3 1.3E-11 2.8E-16 96.8 10.0 83 2-91 25-140 (632)
249 PRK13351 elongation factor G; 99.3 2.8E-11 6.1E-16 95.7 11.7 83 2-91 9-109 (687)
250 KOG0076|consensus 99.3 8.6E-12 1.9E-16 82.5 7.3 83 2-91 18-105 (197)
251 PRK12736 elongation factor Tu; 99.3 4E-11 8.8E-16 89.4 11.6 83 2-91 13-111 (394)
252 PRK10512 selenocysteinyl-tRNA- 99.3 6.6E-11 1.4E-15 92.5 13.1 83 2-91 1-87 (614)
253 cd01885 EF2 EF2 (for archaea a 99.3 5.3E-11 1.1E-15 82.6 11.2 82 3-91 2-109 (222)
254 PRK04004 translation initiatio 99.3 4.9E-11 1.1E-15 92.8 12.2 83 2-91 7-107 (586)
255 PLN03126 Elongation factor Tu; 99.3 5.8E-11 1.3E-15 90.4 11.9 83 2-91 82-180 (478)
256 TIGR00485 EF-Tu translation el 99.3 4.7E-11 1E-15 89.0 11.1 83 2-91 13-111 (394)
257 TIGR03597 GTPase_YqeH ribosome 99.3 1.3E-11 2.7E-16 91.1 7.9 56 3-61 156-217 (360)
258 TIGR02034 CysN sulfate adenyly 99.3 3.9E-11 8.4E-16 89.8 10.6 83 2-91 1-116 (406)
259 cd01856 YlqF YlqF. Proteins o 99.3 1.1E-11 2.3E-16 82.6 6.7 54 2-58 116-170 (171)
260 PRK05124 cysN sulfate adenylyl 99.3 7.2E-11 1.6E-15 89.9 11.8 83 2-91 28-143 (474)
261 smart00053 DYNc Dynamin, GTPas 99.3 9E-11 2E-15 82.2 11.2 24 2-25 27-50 (240)
262 TIGR01393 lepA GTP-binding pro 99.3 9.1E-11 2E-15 91.4 12.3 82 3-91 5-106 (595)
263 KOG0087|consensus 99.3 5.1E-11 1.1E-15 81.0 9.0 98 2-106 15-116 (222)
264 PF05049 IIGP: Interferon-indu 99.3 3.2E-11 6.8E-16 89.0 8.4 101 2-108 36-143 (376)
265 COG2229 Predicted GTPase [Gene 99.3 1.4E-10 3E-15 77.4 10.4 86 1-93 10-106 (187)
266 KOG0086|consensus 99.2 1.3E-10 2.8E-15 75.8 9.6 92 2-103 10-105 (214)
267 KOG0079|consensus 99.2 1.1E-10 2.3E-15 75.8 8.9 93 3-105 10-106 (198)
268 KOG0093|consensus 99.2 2.9E-10 6.3E-15 73.7 10.9 109 1-117 21-131 (193)
269 KOG1424|consensus 99.2 8.7E-12 1.9E-16 94.0 4.3 59 2-63 315-374 (562)
270 cd01882 BMS1 Bms1. Bms1 is an 99.2 2.1E-10 4.7E-15 79.6 10.8 90 2-106 40-132 (225)
271 PRK09866 hypothetical protein; 99.2 3.9E-10 8.4E-15 87.8 13.0 57 48-106 230-287 (741)
272 TIGR03680 eif2g_arch translati 99.2 1.3E-10 2.8E-15 87.0 10.0 83 2-91 5-116 (406)
273 PRK05433 GTP-binding protein L 99.2 3.1E-10 6.8E-15 88.5 11.9 82 3-91 9-110 (600)
274 PTZ00141 elongation factor 1- 99.2 3.1E-10 6.6E-15 85.9 11.3 99 2-107 8-145 (446)
275 cd04165 GTPBP1_like GTPBP1-lik 99.2 6.6E-10 1.4E-14 77.2 11.6 82 3-91 1-122 (224)
276 PRK13796 GTPase YqeH; Provisio 99.2 4.7E-11 1E-15 88.3 5.8 56 3-61 162-223 (365)
277 KOG0072|consensus 99.2 4.6E-11 9.9E-16 77.1 4.4 81 1-91 18-98 (182)
278 cd01859 MJ1464 MJ1464. This f 99.2 1.5E-10 3.3E-15 75.7 6.9 54 2-58 102-156 (156)
279 PRK12288 GTPase RsgA; Reviewed 99.1 9.9E-11 2.2E-15 86.0 6.0 56 3-61 207-270 (347)
280 TIGR00490 aEF-2 translation el 99.1 3.8E-10 8.3E-15 89.7 9.3 83 2-91 20-122 (720)
281 PRK12740 elongation factor G; 99.1 8E-10 1.7E-14 87.2 11.0 78 7-91 1-96 (668)
282 PRK12289 GTPase RsgA; Reviewed 99.1 1E-10 2.2E-15 86.1 5.4 57 3-62 174-238 (352)
283 TIGR02836 spore_IV_A stage IV 99.1 6.8E-10 1.5E-14 82.8 9.7 107 2-108 18-182 (492)
284 PRK04000 translation initiatio 99.1 8.6E-10 1.9E-14 82.7 10.4 83 2-91 10-121 (411)
285 PTZ00416 elongation factor 2; 99.1 1.1E-09 2.4E-14 88.3 11.0 95 3-104 21-142 (836)
286 PF03193 DUF258: Protein of un 99.1 9E-11 1.9E-15 77.6 3.3 57 2-61 36-100 (161)
287 TIGR00157 ribosome small subun 99.1 2.9E-10 6.3E-15 79.9 5.4 56 2-61 121-184 (245)
288 KOG0091|consensus 99.1 1E-09 2.2E-14 72.3 7.4 94 2-102 9-107 (213)
289 PF00735 Septin: Septin; Inte 99.0 2.9E-09 6.2E-14 76.3 10.2 90 2-91 5-126 (281)
290 PLN00116 translation elongatio 99.0 1.9E-09 4.2E-14 87.0 10.3 97 2-105 20-149 (843)
291 KOG2484|consensus 99.0 4.7E-10 1E-14 82.6 4.1 80 2-89 253-333 (435)
292 PLN00043 elongation factor 1-a 99.0 7.5E-09 1.6E-13 78.4 10.4 83 2-91 8-121 (447)
293 PRK00098 GTPase RsgA; Reviewed 99.0 1.2E-09 2.7E-14 78.7 5.7 55 3-60 166-228 (298)
294 KOG2485|consensus 99.0 2.3E-09 5.1E-14 76.9 6.9 64 2-65 144-213 (335)
295 PRK07560 elongation factor EF- 99.0 5.9E-09 1.3E-13 83.1 9.8 82 3-91 22-123 (731)
296 COG1162 Predicted GTPases [Gen 98.9 1.2E-09 2.7E-14 78.3 4.9 56 3-61 166-229 (301)
297 COG0480 FusA Translation elong 98.9 1.9E-08 4.2E-13 79.5 11.2 99 3-108 12-130 (697)
298 KOG2423|consensus 98.9 1.6E-09 3.5E-14 80.2 4.7 59 2-63 308-367 (572)
299 COG4917 EutP Ethanolamine util 98.9 8.3E-09 1.8E-13 65.3 6.6 77 1-91 1-77 (148)
300 cd01854 YjeQ_engC YjeQ/EngC. 98.9 5.2E-09 1.1E-13 75.1 5.6 56 3-61 163-226 (287)
301 KOG0395|consensus 98.9 3.6E-08 7.7E-13 67.3 9.3 95 2-105 4-100 (196)
302 KOG0097|consensus 98.8 8.4E-08 1.8E-12 62.1 10.0 81 2-91 12-96 (215)
303 KOG2486|consensus 98.8 5.8E-08 1.3E-12 69.0 9.7 104 2-108 137-250 (320)
304 KOG1954|consensus 98.8 3.3E-08 7.1E-13 72.8 8.3 89 2-90 59-193 (532)
305 COG5256 TEF1 Translation elong 98.8 3.4E-08 7.5E-13 73.3 7.8 83 2-91 8-121 (428)
306 KOG1547|consensus 98.8 5.2E-08 1.1E-12 68.2 8.2 89 2-90 47-167 (336)
307 COG5019 CDC3 Septin family pro 98.7 1.5E-07 3.2E-12 69.0 9.9 89 2-90 24-145 (373)
308 KOG2655|consensus 98.7 2.1E-07 4.6E-12 68.4 10.5 90 2-91 22-142 (366)
309 PRK13768 GTPase; Provisional 98.7 2.7E-08 5.9E-13 70.3 5.5 43 48-91 97-141 (253)
310 KOG3883|consensus 98.7 6.3E-07 1.4E-11 58.7 10.6 97 2-104 10-112 (198)
311 PTZ00327 eukaryotic translatio 98.6 3.5E-07 7.7E-12 69.6 9.8 83 2-91 35-153 (460)
312 KOG0081|consensus 98.6 2.6E-08 5.6E-13 65.5 2.5 96 3-106 11-117 (219)
313 PF00448 SRP54: SRP54-type pro 98.6 2.4E-07 5.3E-12 63.2 7.2 58 47-105 83-140 (196)
314 COG4108 PrfC Peptide chain rel 98.6 2.6E-07 5.5E-12 69.3 7.6 83 2-91 13-117 (528)
315 KOG0088|consensus 98.6 4.9E-08 1.1E-12 64.2 3.1 90 2-102 14-108 (218)
316 KOG3886|consensus 98.5 1.2E-07 2.6E-12 66.0 4.6 84 2-91 5-94 (295)
317 COG0532 InfB Translation initi 98.4 4.4E-06 9.5E-11 63.8 10.5 83 2-91 6-91 (509)
318 cd03112 CobW_like The function 98.4 9.8E-07 2.1E-11 58.1 6.2 60 47-106 86-149 (158)
319 KOG0083|consensus 98.4 2.4E-07 5.2E-12 59.5 3.1 92 6-105 2-99 (192)
320 KOG4252|consensus 98.4 2E-07 4.3E-12 62.5 2.6 90 2-101 21-114 (246)
321 KOG1707|consensus 98.4 3.3E-06 7.2E-11 65.2 9.2 83 2-91 10-92 (625)
322 PRK01889 GTPase RsgA; Reviewed 98.4 3.8E-07 8.3E-12 67.4 3.8 55 3-60 197-259 (356)
323 PRK10416 signal recognition pa 98.4 4.3E-06 9.3E-11 61.0 8.9 54 47-100 196-254 (318)
324 TIGR01425 SRP54_euk signal rec 98.4 6.4E-06 1.4E-10 62.2 10.1 92 3-97 102-231 (429)
325 KOG0448|consensus 98.3 6.8E-06 1.5E-10 64.5 9.4 86 2-91 110-245 (749)
326 PRK14721 flhF flagellar biosyn 98.3 2.4E-06 5.2E-11 64.4 6.6 21 3-23 193-213 (420)
327 COG1116 TauB ABC-type nitrate/ 98.3 2.5E-06 5.4E-11 59.8 6.2 23 4-26 32-54 (248)
328 COG3840 ThiQ ABC-type thiamine 98.3 1.2E-06 2.6E-11 59.2 3.9 24 3-26 27-50 (231)
329 TIGR00064 ftsY signal recognit 98.3 1.3E-05 2.7E-10 57.4 9.3 57 46-102 153-214 (272)
330 PRK09435 membrane ATPase/prote 98.2 8.5E-06 1.8E-10 59.8 8.5 21 2-22 57-77 (332)
331 KOG1673|consensus 98.2 1.9E-06 4E-11 56.7 4.5 95 2-104 21-117 (205)
332 PF03029 ATP_bind_1: Conserved 98.2 6.2E-07 1.3E-11 62.9 2.5 42 49-91 92-135 (238)
333 KOG0462|consensus 98.2 8.6E-06 1.9E-10 62.7 8.7 82 3-91 62-161 (650)
334 COG1136 SalX ABC-type antimicr 98.2 1.5E-06 3.3E-11 60.4 4.2 24 3-26 33-56 (226)
335 KOG0393|consensus 98.2 2.7E-06 5.9E-11 57.9 5.2 82 2-91 5-89 (198)
336 PRK14722 flhF flagellar biosyn 98.2 3.8E-06 8.2E-11 62.5 6.2 93 3-99 139-266 (374)
337 cd03116 MobB Molybdenum is an 98.2 3.9E-06 8.5E-11 55.5 5.6 23 1-23 1-23 (159)
338 COG1217 TypA Predicted membran 98.2 1.3E-05 2.8E-10 60.9 8.8 82 3-91 7-104 (603)
339 COG0411 LivG ABC-type branched 98.2 3.2E-07 6.9E-12 64.1 0.3 24 3-26 32-55 (250)
340 PRK12723 flagellar biosynthesi 98.2 1.2E-05 2.6E-10 60.1 8.5 52 47-98 254-305 (388)
341 PRK11889 flhF flagellar biosyn 98.2 1.2E-05 2.6E-10 60.3 8.2 21 2-22 242-262 (436)
342 PF00005 ABC_tran: ABC transpo 98.2 2.8E-06 6E-11 54.1 4.2 23 3-25 13-35 (137)
343 KOG0458|consensus 98.2 1.5E-05 3.3E-10 61.6 8.7 98 2-106 178-314 (603)
344 COG5192 BMS1 GTP-binding prote 98.2 7.5E-06 1.6E-10 63.7 7.0 74 2-91 70-146 (1077)
345 PRK12724 flagellar biosynthesi 98.2 6.2E-06 1.3E-10 62.1 6.4 98 3-100 225-354 (432)
346 KOG1532|consensus 98.2 4.6E-06 1E-10 59.6 5.3 21 2-22 20-40 (366)
347 PRK10751 molybdopterin-guanine 98.1 7.9E-06 1.7E-10 54.8 5.9 23 2-24 7-29 (173)
348 cd03115 SRP The signal recogni 98.1 2.7E-05 5.9E-10 51.6 8.3 57 47-104 82-138 (173)
349 COG1126 GlnQ ABC-type polar am 98.1 4.3E-06 9.3E-11 57.8 4.4 23 3-25 30-52 (240)
350 KOG3887|consensus 98.1 5.5E-06 1.2E-10 58.3 4.9 86 2-91 28-114 (347)
351 COG1120 FepC ABC-type cobalami 98.1 3.8E-06 8.3E-11 59.5 3.9 22 4-25 31-52 (258)
352 cd03222 ABC_RNaseL_inhibitor T 98.1 8.7E-06 1.9E-10 54.7 5.4 23 3-25 27-49 (177)
353 PTZ00099 rab6; Provisional 98.1 1.1E-05 2.5E-10 53.9 5.9 47 48-102 29-75 (176)
354 cd03261 ABC_Org_Solvent_Resist 98.1 6.8E-06 1.5E-10 57.1 4.8 23 3-25 28-50 (235)
355 TIGR00960 3a0501s02 Type II (G 98.1 6.4E-06 1.4E-10 56.5 4.6 23 3-25 31-53 (216)
356 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.1 6.4E-06 1.4E-10 56.5 4.6 23 3-25 32-54 (218)
357 PRK14974 cell division protein 98.1 3.1E-05 6.7E-10 57.0 8.3 49 47-98 222-272 (336)
358 TIGR01166 cbiO cobalt transpor 98.1 7E-06 1.5E-10 55.3 4.6 23 3-25 20-42 (190)
359 COG0410 LivF ABC-type branched 98.1 6.1E-06 1.3E-10 57.4 4.3 23 3-25 31-53 (237)
360 PRK05703 flhF flagellar biosyn 98.1 8.2E-06 1.8E-10 61.7 5.4 57 47-103 299-355 (424)
361 cd03225 ABC_cobalt_CbiO_domain 98.1 7.1E-06 1.5E-10 56.0 4.7 23 3-25 29-51 (211)
362 PRK14845 translation initiatio 98.1 4.1E-05 9E-10 63.3 9.7 73 12-91 472-562 (1049)
363 COG0194 Gmk Guanylate kinase [ 98.1 2.8E-06 6.1E-11 57.3 2.5 41 3-43 6-46 (191)
364 cd03226 ABC_cobalt_CbiO_domain 98.1 7.7E-06 1.7E-10 55.7 4.7 23 3-25 28-50 (205)
365 cd03259 ABC_Carb_Solutes_like 98.1 8.1E-06 1.8E-10 55.9 4.8 23 3-25 28-50 (213)
366 cd03292 ABC_FtsE_transporter F 98.0 8.9E-06 1.9E-10 55.6 4.9 23 3-25 29-51 (214)
367 COG3839 MalK ABC-type sugar tr 98.0 5.4E-06 1.2E-10 60.8 4.0 23 4-26 32-54 (338)
368 TIGR02673 FtsE cell division A 98.0 8.4E-06 1.8E-10 55.8 4.7 23 3-25 30-52 (214)
369 COG1134 TagH ABC-type polysacc 98.0 6.9E-06 1.5E-10 57.5 4.0 42 3-55 55-96 (249)
370 cd03262 ABC_HisP_GlnQ_permease 98.0 8.8E-06 1.9E-10 55.6 4.5 24 3-26 28-51 (213)
371 cd03293 ABC_NrtD_SsuB_transpor 98.0 9.9E-06 2.1E-10 55.8 4.8 23 3-25 32-54 (220)
372 TIGR02211 LolD_lipo_ex lipopro 98.0 9.4E-06 2E-10 55.8 4.6 24 3-26 33-56 (221)
373 cd03224 ABC_TM1139_LivF_branch 98.0 9.5E-06 2E-10 55.8 4.6 24 3-26 28-51 (222)
374 cd03263 ABC_subfamily_A The AB 98.0 8.9E-06 1.9E-10 55.9 4.4 24 3-26 30-53 (220)
375 PRK11629 lolD lipoprotein tran 98.0 1.1E-05 2.3E-10 56.1 4.9 23 3-25 37-59 (233)
376 cd03258 ABC_MetN_methionine_tr 98.0 1E-05 2.2E-10 56.2 4.7 24 3-26 33-56 (233)
377 TIGR03608 L_ocin_972_ABC putat 98.0 1.1E-05 2.4E-10 54.8 4.8 23 3-25 26-48 (206)
378 TIGR01189 ccmA heme ABC export 98.0 1.1E-05 2.5E-10 54.6 4.8 23 3-25 28-50 (198)
379 cd03215 ABC_Carb_Monos_II This 98.0 1E-05 2.2E-10 54.3 4.5 24 3-26 28-51 (182)
380 cd03218 ABC_YhbG The ABC trans 98.0 1E-05 2.2E-10 56.0 4.7 23 3-25 28-50 (232)
381 cd03257 ABC_NikE_OppD_transpor 98.0 9.9E-06 2.2E-10 55.9 4.6 23 3-25 33-55 (228)
382 cd03265 ABC_DrrA DrrA is the A 98.0 1.1E-05 2.4E-10 55.6 4.8 23 3-25 28-50 (220)
383 cd03264 ABC_drug_resistance_li 98.0 8.5E-06 1.8E-10 55.7 4.2 23 3-25 27-49 (211)
384 cd03269 ABC_putative_ATPase Th 98.0 9.5E-06 2.1E-10 55.4 4.4 23 3-25 28-50 (210)
385 TIGR02315 ABC_phnC phosphonate 98.0 1E-05 2.2E-10 56.4 4.6 23 3-25 30-52 (243)
386 COG1419 FlhF Flagellar GTP-bin 98.0 3.8E-05 8.2E-10 57.4 7.7 21 3-23 205-225 (407)
387 PRK13540 cytochrome c biogenes 98.0 1E-05 2.3E-10 55.0 4.5 23 3-25 29-51 (200)
388 cd03229 ABC_Class3 This class 98.0 1.3E-05 2.7E-10 53.6 4.8 24 3-26 28-51 (178)
389 cd00071 GMPK Guanosine monopho 98.0 1E-05 2.2E-10 52.1 4.2 51 4-56 2-54 (137)
390 PRK10908 cell division protein 98.0 1.3E-05 2.8E-10 55.3 5.0 23 3-25 30-52 (222)
391 PRK14737 gmk guanylate kinase; 98.0 8.5E-06 1.8E-10 55.1 4.0 41 2-42 5-46 (186)
392 cd03266 ABC_NatA_sodium_export 98.0 1.1E-05 2.5E-10 55.3 4.7 23 3-25 33-55 (218)
393 KOG1145|consensus 98.0 4.8E-05 1E-09 58.8 8.3 81 2-91 154-237 (683)
394 PRK13541 cytochrome c biogenes 98.0 1E-05 2.3E-10 54.7 4.4 24 3-26 28-51 (195)
395 PRK14723 flhF flagellar biosyn 98.0 2.7E-05 5.9E-10 62.4 7.2 93 3-98 187-313 (767)
396 COG3276 SelB Selenocysteine-sp 98.0 6.8E-05 1.5E-09 56.4 8.8 98 3-107 2-103 (447)
397 PRK10584 putative ABC transpor 98.0 1.2E-05 2.5E-10 55.7 4.5 23 3-25 38-60 (228)
398 COG4559 ABC-type hemin transpo 98.0 6.8E-06 1.5E-10 56.8 3.3 24 3-26 29-52 (259)
399 cd03268 ABC_BcrA_bacitracin_re 98.0 1.2E-05 2.5E-10 54.9 4.4 23 3-25 28-50 (208)
400 TIGR00750 lao LAO/AO transport 98.0 3.5E-05 7.7E-10 55.7 7.1 22 2-23 35-56 (300)
401 PRK08118 topology modulation p 98.0 7.3E-06 1.6E-10 54.5 3.3 23 1-23 1-23 (167)
402 cd03256 ABC_PhnC_transporter A 98.0 1.3E-05 2.7E-10 55.8 4.6 23 3-25 29-51 (241)
403 TIGR03864 PQQ_ABC_ATP ABC tran 98.0 1.4E-05 3.1E-10 55.6 4.9 23 3-25 29-51 (236)
404 PRK11124 artP arginine transpo 98.0 1.4E-05 3E-10 55.8 4.8 23 3-25 30-52 (242)
405 cd03296 ABC_CysA_sulfate_impor 98.0 1.3E-05 2.9E-10 55.8 4.8 23 3-25 30-52 (239)
406 PRK11264 putative amino-acid A 98.0 1.4E-05 3.1E-10 56.0 4.9 23 3-25 31-53 (250)
407 cd03219 ABC_Mj1267_LivG_branch 98.0 1.2E-05 2.7E-10 55.7 4.5 23 3-25 28-50 (236)
408 PRK13543 cytochrome c biogenes 98.0 1.4E-05 3E-10 54.9 4.7 24 3-26 39-62 (214)
409 cd03214 ABC_Iron-Siderophores_ 98.0 1.4E-05 3.1E-10 53.5 4.6 23 3-25 27-49 (180)
410 KOG0468|consensus 98.0 0.00014 3.1E-09 57.5 10.5 82 3-91 130-233 (971)
411 cd03235 ABC_Metallic_Cations A 98.0 9.9E-06 2.2E-10 55.4 3.8 23 3-25 27-49 (213)
412 cd03230 ABC_DR_subfamily_A Thi 98.0 1.7E-05 3.7E-10 52.8 4.9 24 3-26 28-51 (173)
413 cd03216 ABC_Carb_Monos_I This 98.0 1.6E-05 3.5E-10 52.5 4.7 23 3-25 28-50 (163)
414 cd03301 ABC_MalK_N The N-termi 98.0 1.6E-05 3.4E-10 54.4 4.8 23 3-25 28-50 (213)
415 PRK15056 manganese/iron transp 98.0 1.4E-05 3E-10 56.9 4.7 23 3-25 35-57 (272)
416 PRK11248 tauB taurine transpor 98.0 1.4E-05 3E-10 56.5 4.6 23 3-25 29-51 (255)
417 PRK10895 lipopolysaccharide AB 97.9 1.5E-05 3.1E-10 55.7 4.6 23 3-25 31-53 (241)
418 PRK13638 cbiO cobalt transport 97.9 1.5E-05 3.2E-10 56.7 4.6 23 3-25 29-51 (271)
419 TIGR02868 CydC thiol reductant 97.9 1.1E-05 2.5E-10 62.2 4.3 24 3-26 363-386 (529)
420 COG1131 CcmA ABC-type multidru 97.9 1.4E-05 3E-10 57.7 4.4 24 3-26 33-56 (293)
421 PRK14250 phosphate ABC transpo 97.9 1.6E-05 3.5E-10 55.5 4.6 23 3-25 31-53 (241)
422 TIGR01188 drrA daunorubicin re 97.9 1.7E-05 3.6E-10 57.3 4.8 23 3-25 21-43 (302)
423 TIGR03263 guanyl_kin guanylate 97.9 1.8E-05 4E-10 52.6 4.7 23 3-25 3-25 (180)
424 cd03298 ABC_ThiQ_thiamine_tran 97.9 1.8E-05 3.9E-10 54.1 4.7 24 3-26 26-49 (211)
425 PRK13641 cbiO cobalt transport 97.9 1.7E-05 3.6E-10 57.0 4.6 23 3-25 35-57 (287)
426 TIGR03005 ectoine_ehuA ectoine 97.9 1.9E-05 4.1E-10 55.5 4.8 23 3-25 28-50 (252)
427 PRK13539 cytochrome c biogenes 97.9 1.8E-05 3.9E-10 54.1 4.6 24 3-26 30-53 (207)
428 TIGR01184 ntrCD nitrate transp 97.9 1.7E-05 3.6E-10 55.1 4.5 24 3-26 13-36 (230)
429 PRK13646 cbiO cobalt transport 97.9 1.6E-05 3.6E-10 57.0 4.5 23 3-25 35-57 (286)
430 PRK13652 cbiO cobalt transport 97.9 1.8E-05 3.8E-10 56.5 4.7 23 3-25 32-54 (277)
431 TIGR03410 urea_trans_UrtE urea 97.9 1.6E-05 3.5E-10 55.0 4.4 24 3-26 28-51 (230)
432 PRK13649 cbiO cobalt transport 97.9 1.9E-05 4.2E-10 56.3 4.8 23 3-25 35-57 (280)
433 PRK13538 cytochrome c biogenes 97.9 2E-05 4.3E-10 53.7 4.7 24 3-26 29-52 (204)
434 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 1.8E-05 3.9E-10 51.3 4.3 23 3-25 28-50 (144)
435 PRK13648 cbiO cobalt transport 97.9 1.9E-05 4E-10 56.1 4.7 23 3-25 37-59 (269)
436 TIGR02769 nickel_nikE nickel i 97.9 1.9E-05 4.1E-10 56.0 4.7 23 3-25 39-61 (265)
437 PRK15112 antimicrobial peptide 97.9 1.7E-05 3.7E-10 56.3 4.5 23 3-25 41-63 (267)
438 cd03295 ABC_OpuCA_Osmoprotecti 97.9 1.9E-05 4.1E-10 55.2 4.6 23 3-25 29-51 (242)
439 cd03246 ABCC_Protease_Secretio 97.9 2.1E-05 4.5E-10 52.3 4.6 24 3-26 30-53 (173)
440 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.9 2.2E-05 4.8E-10 54.3 4.8 23 3-25 50-72 (224)
441 cd03297 ABC_ModC_molybdenum_tr 97.9 2.1E-05 4.6E-10 53.9 4.7 23 3-25 25-47 (214)
442 cd03231 ABC_CcmA_heme_exporter 97.9 2.2E-05 4.8E-10 53.4 4.7 24 3-26 28-51 (201)
443 PRK11300 livG leucine/isoleuci 97.9 1.9E-05 4E-10 55.5 4.5 23 3-25 33-55 (255)
444 cd03254 ABCC_Glucan_exporter_l 97.9 1.8E-05 3.8E-10 54.7 4.3 24 3-26 31-54 (229)
445 PRK09493 glnQ glutamine ABC tr 97.9 2.2E-05 4.7E-10 54.7 4.8 23 3-25 29-51 (240)
446 cd03251 ABCC_MsbA MsbA is an e 97.9 1.9E-05 4E-10 54.8 4.4 24 3-26 30-53 (234)
447 cd03237 ABC_RNaseL_inhibitor_d 97.9 2.9E-05 6.2E-10 54.7 5.3 24 3-26 27-50 (246)
448 TIGR01288 nodI ATP-binding ABC 97.9 2.1E-05 4.6E-10 56.8 4.8 23 3-25 32-54 (303)
449 PRK10247 putative ABC transpor 97.9 2.1E-05 4.4E-10 54.5 4.5 23 3-25 35-57 (225)
450 cd03253 ABCC_ATM1_transporter 97.9 1.9E-05 4.1E-10 54.8 4.3 24 3-26 29-52 (236)
451 TIGR03797 NHPM_micro_ABC2 NHPM 97.9 1.5E-05 3.2E-10 63.4 4.2 24 3-26 481-504 (686)
452 PRK11831 putative ABC transpor 97.9 2.2E-05 4.7E-10 55.8 4.7 24 3-26 35-58 (269)
453 cd03294 ABC_Pro_Gly_Bertaine T 97.9 2.4E-05 5.1E-10 55.7 4.8 24 3-26 52-75 (269)
454 PRK10575 iron-hydroxamate tran 97.9 1.9E-05 4.2E-10 55.9 4.4 23 3-25 39-61 (265)
455 PRK06731 flhF flagellar biosyn 97.9 0.00012 2.6E-09 52.3 8.4 22 2-23 76-97 (270)
456 PRK11153 metN DL-methionine tr 97.9 2.2E-05 4.7E-10 57.8 4.7 23 3-25 33-55 (343)
457 PRK11614 livF leucine/isoleuci 97.9 2.2E-05 4.7E-10 54.6 4.5 24 3-26 33-56 (237)
458 COG3638 ABC-type phosphate/pho 97.9 1.7E-05 3.7E-10 55.5 3.8 22 3-24 32-53 (258)
459 PRK12726 flagellar biosynthesi 97.9 6.1E-05 1.3E-09 56.3 6.9 20 3-22 208-227 (407)
460 TIGR03740 galliderm_ABC gallid 97.9 2.6E-05 5.7E-10 53.8 4.8 23 3-25 28-50 (223)
461 PRK10253 iron-enterobactin tra 97.9 2.2E-05 4.8E-10 55.6 4.5 23 3-25 35-57 (265)
462 PRK13637 cbiO cobalt transport 97.9 2.2E-05 4.8E-10 56.4 4.5 23 3-25 35-57 (287)
463 TIGR03411 urea_trans_UrtD urea 97.9 2.3E-05 4.9E-10 54.7 4.5 23 3-25 30-52 (242)
464 COG0481 LepA Membrane GTPase L 97.9 7.2E-05 1.5E-09 57.1 7.3 82 3-91 11-112 (603)
465 cd03247 ABCC_cytochrome_bd The 97.9 2.2E-05 4.8E-10 52.4 4.2 24 3-26 30-53 (178)
466 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.9 2E-05 4.4E-10 54.8 4.1 24 3-26 31-54 (238)
467 TIGR02770 nickel_nikD nickel i 97.9 2.7E-05 5.8E-10 54.0 4.7 24 3-26 14-37 (230)
468 COG2274 SunT ABC-type bacterio 97.9 1.3E-05 2.8E-10 64.1 3.4 23 3-25 501-523 (709)
469 cd03260 ABC_PstB_phosphate_tra 97.9 2.4E-05 5.3E-10 54.0 4.5 23 3-25 28-50 (227)
470 PRK13644 cbiO cobalt transport 97.9 2.2E-05 4.8E-10 56.0 4.4 23 3-25 30-52 (274)
471 PRK10771 thiQ thiamine transpo 97.9 2.4E-05 5.3E-10 54.3 4.5 24 3-26 27-50 (232)
472 COG1121 ZnuC ABC-type Mn/Zn tr 97.9 2.1E-05 4.6E-10 55.6 4.1 22 3-24 32-53 (254)
473 cd03245 ABCC_bacteriocin_expor 97.9 2.2E-05 4.8E-10 53.9 4.2 24 3-26 32-55 (220)
474 TIGR03873 F420-0_ABC_ATP propo 97.9 2.6E-05 5.6E-10 54.9 4.6 23 3-25 29-51 (256)
475 TIGR00972 3a0107s01c2 phosphat 97.9 2.9E-05 6.3E-10 54.4 4.8 24 3-26 29-52 (247)
476 TIGR01277 thiQ thiamine ABC tr 97.9 2.8E-05 6E-10 53.3 4.6 24 3-26 26-49 (213)
477 cd03244 ABCC_MRP_domain2 Domai 97.9 2.3E-05 5E-10 53.9 4.2 24 3-26 32-55 (221)
478 cd03228 ABCC_MRP_Like The MRP 97.9 2.6E-05 5.6E-10 51.8 4.3 24 3-26 30-53 (171)
479 PRK11701 phnK phosphonate C-P 97.9 2.3E-05 5.1E-10 55.2 4.4 23 3-25 34-56 (258)
480 PF13207 AAA_17: AAA domain; P 97.9 1.5E-05 3.3E-10 49.6 3.1 21 3-23 1-21 (121)
481 COG0396 sufC Cysteine desulfur 97.9 2.8E-05 6E-10 54.2 4.5 38 4-50 33-70 (251)
482 PRK13536 nodulation factor exp 97.9 2.4E-05 5.2E-10 57.6 4.5 23 3-25 69-91 (340)
483 PRK13647 cbiO cobalt transport 97.8 2.6E-05 5.7E-10 55.6 4.6 23 3-25 33-55 (274)
484 PRK13645 cbiO cobalt transport 97.8 2.7E-05 5.8E-10 55.9 4.6 23 3-25 39-61 (289)
485 COG3842 PotA ABC-type spermidi 97.8 2E-05 4.4E-10 58.1 4.0 23 4-26 34-56 (352)
486 PRK13537 nodulation ABC transp 97.8 2.7E-05 5.9E-10 56.4 4.6 23 3-25 35-57 (306)
487 PRK13632 cbiO cobalt transport 97.8 2.5E-05 5.3E-10 55.6 4.4 24 3-26 37-60 (271)
488 cd03233 ABC_PDR_domain1 The pl 97.8 2.9E-05 6.2E-10 53.0 4.5 24 3-26 35-58 (202)
489 PRK13635 cbiO cobalt transport 97.8 2.5E-05 5.4E-10 55.9 4.3 23 3-25 35-57 (279)
490 PRK13548 hmuV hemin importer A 97.8 2.9E-05 6.4E-10 54.8 4.6 23 3-25 30-52 (258)
491 PRK13643 cbiO cobalt transport 97.8 2.7E-05 5.9E-10 55.9 4.5 23 3-25 34-56 (288)
492 COG1101 PhnK ABC-type uncharac 97.8 2.4E-05 5.2E-10 54.3 4.0 22 4-25 35-56 (263)
493 PRK11247 ssuB aliphatic sulfon 97.8 2.9E-05 6.3E-10 55.0 4.6 24 3-26 40-63 (257)
494 PRK06217 hypothetical protein; 97.8 1.7E-05 3.7E-10 53.2 3.3 23 1-23 1-23 (183)
495 cd03369 ABCC_NFT1 Domain 2 of 97.8 2.7E-05 5.9E-10 53.1 4.3 24 3-26 36-59 (207)
496 TIGR03771 anch_rpt_ABC anchore 97.8 2.8E-05 6.1E-10 53.8 4.4 23 3-25 8-30 (223)
497 cd03300 ABC_PotA_N PotA is an 97.8 3.4E-05 7.4E-10 53.6 4.8 24 3-26 28-51 (232)
498 cd03267 ABC_NatA_like Similar 97.8 3.6E-05 7.8E-10 53.7 4.9 23 3-25 49-71 (236)
499 PRK13650 cbiO cobalt transport 97.8 2.9E-05 6.2E-10 55.5 4.5 23 3-25 35-57 (279)
500 PRK11231 fecE iron-dicitrate t 97.8 2.9E-05 6.3E-10 54.6 4.5 23 3-25 30-52 (255)
No 1
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.95 E-value=2.1e-28 Score=174.18 Aligned_cols=118 Identities=55% Similarity=0.908 Sum_probs=112.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.+|+++|+|+||||||+|+||+.+.+++.|+|||..+.+|.+.|+|.+++++|+||++++++.+++++.+++..+++||+
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADl 143 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADL 143 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCE
Confidence 47999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHcCCcccCCCCceeeC
Q psy6249 82 VLMMLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFK 119 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (119)
|++|+|+..+..+.+.+..||+..++.+.++||.|.|+
T Consensus 144 IiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~ 181 (365)
T COG1163 144 IIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIK 181 (365)
T ss_pred EEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEE
Confidence 99999999876668999999999999999999999874
No 2
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=2.6e-25 Score=161.86 Aligned_cols=117 Identities=26% Similarity=0.406 Sum_probs=102.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE-CCeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY-KGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
..|+++|.||||||||+|+|++.++.+++++++|..++.+.+.+ ++.++.+||+||+.+..++..+++.+++++++.+|
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 47999999999999999999998888999999999999999988 56789999999999988877788899999999999
Q ss_pred EEEEEEeCCCC--chhHHHHHHHHHHcCCcccCCCCceee
Q psy6249 81 LVLMMLDATKQ--DVQRGLLEKELESVGIRLNKKKPNIYF 118 (119)
Q Consensus 81 ~il~Vvd~~~~--~~~~~~~~~~l~~~~~~~~~~~~~v~~ 118 (119)
++++|+|+++. .++++.+.+++..+...+.++|..|++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~ 278 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVL 278 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEE
Confidence 99999999975 467777888888887666666655554
No 3
>KOG1486|consensus
Probab=99.93 E-value=3.2e-26 Score=158.87 Aligned_cols=118 Identities=75% Similarity=1.104 Sum_probs=113.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.+|+++|.|++|||||+..++....+.++|.++|..+.+|.+.+++..++++|.||++++++++.+++++.....+.||+
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDl 142 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADL 142 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHcCCcccCCCCceeeC
Q psy6249 82 VLMMLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFK 119 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (119)
|+.|+|++..+.+.+.++.||+..++++++++|.|++|
T Consensus 143 ilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k 180 (364)
T KOG1486|consen 143 ILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFK 180 (364)
T ss_pred EEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEE
Confidence 99999999998888899999999999999999999985
No 4
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.8e-26 Score=164.98 Aligned_cols=106 Identities=24% Similarity=0.410 Sum_probs=94.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC------------------CeeEEEEeCCcccccc
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK------------------GANIQLLDLPGIIEGA 62 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~~~~~DtpG~~~~~ 62 (119)
+++++|+|.||||||||||+||....++++||++|++|+.|...+. ...++++|.+|++.++
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 5799999999999999999999988889999999999999987642 2468999999999999
Q ss_pred cccchHHHHHHHHhcCCCEEEEEEeCC------------CCchhHHHHHHHHHHcC
Q psy6249 63 AQGKGRGRQVIAVARTADLVLMMLDAT------------KQDVQRGLLEKELESVG 106 (119)
Q Consensus 63 ~~~~~~~~~~~~~~~~~d~il~Vvd~~------------~~~~~~~~~~~~l~~~~ 106 (119)
+++++++++|+.+++++|+|++|+|++ ||.++++.+..||...+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d 137 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWD 137 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 45678888888875544
No 5
>KOG1489|consensus
Probab=99.93 E-value=8.4e-26 Score=160.46 Aligned_cols=118 Identities=30% Similarity=0.404 Sum_probs=109.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCee-EEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGAN-IQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
..|+++|.||+|||||+|+|+++++.+++|++||..|+.|.+.+++.. +++-|.||++++++..++++.+|+++++.|+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 468999999999999999999999999999999999999999998764 9999999999999999999999999999999
Q ss_pred EEEEEEeCCCC-----chhHHHHHHHHHHcCCcccCCCCceeeC
Q psy6249 81 LVLMMLDATKQ-----DVQRGLLEKELESVGIRLNKKKPNIYFK 119 (119)
Q Consensus 81 ~il~Vvd~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (119)
.++||+|.+.. -++++.+..||+.|.+.+..|+..|+.|
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaN 320 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVAN 320 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEe
Confidence 99999999865 5688899999999999999998887754
No 6
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.93 E-value=1e-25 Score=161.35 Aligned_cols=117 Identities=27% Similarity=0.442 Sum_probs=109.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC-CeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK-GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.|+++|.|||||||||++++.+++.+++||+||..|+.|.+... +..+.+-|.||++++++++.+++.+|++|+..|.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 57899999999999999999999999999999999999999874 56699999999999999999999999999999999
Q ss_pred EEEEEeCCC-----CchhHHHHHHHHHHcCCcccCCCCceeeC
Q psy6249 82 VLMMLDATK-----QDVQRGLLEKELESVGIRLNKKKPNIYFK 119 (119)
Q Consensus 82 il~Vvd~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (119)
+++|||.+. |.++++.+..||+.|+..+..++..|+++
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~N 283 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLN 283 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEe
Confidence 999999984 46789999999999999999999888764
No 7
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.92 E-value=2.3e-24 Score=150.13 Aligned_cols=116 Identities=70% Similarity=1.051 Sum_probs=103.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLV 82 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 82 (119)
+|+++|.||||||||+|+|++....+++++++|..+..+.+.+++..+++|||||+.+......++..+++..++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 79999999999999999999988788889999999999999999999999999998776544445566778889999999
Q ss_pred EEEEeCCCCchhHHHHHHHHHHcCCcccCCCCceee
Q psy6249 83 LMMLDATKQDVQRGLLEKELESVGIRLNKKKPNIYF 118 (119)
Q Consensus 83 l~Vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 118 (119)
++|+|++++.++.+.+.++|+.++..+.+++|.|.|
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~ 117 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITI 117 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEE
Confidence 999999998778899999999999999888887765
No 8
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1e-24 Score=164.79 Aligned_cols=106 Identities=25% Similarity=0.423 Sum_probs=95.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.+|+++|.||||||||||+|++.++.++++|++|+.++.+.+.+.+..+.++||||+++..++..++...+++++..||+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 47999999999999999999999888999999999999999999999999999999998877777788889999999999
Q ss_pred EEEEEeCCC------CchhHHHHHHHHHHcCC
Q psy6249 82 VLMMLDATK------QDVQRGLLEKELESVGI 107 (119)
Q Consensus 82 il~Vvd~~~------~~~~~~~~~~~l~~~~~ 107 (119)
+++|+|+++ +..+++.+.++|..+..
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~ 271 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAP 271 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhh
Confidence 999999975 34467778888877765
No 9
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.92 E-value=3.2e-25 Score=157.27 Aligned_cols=107 Identities=23% Similarity=0.425 Sum_probs=94.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe-----------------eEEEEeCCcccccccccc
Q psy6249 4 LRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA-----------------NIQLLDLPGIIEGAAQGK 66 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~~DtpG~~~~~~~~~ 66 (119)
|+++|.||||||||||+|++.+..++++|++|++++.|.+.+.+. .++++|+||+.++.+.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999999989999999999999999887654 499999999999888888
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCC------------CCchhHHHHHHHHHHcCCccc
Q psy6249 67 GRGRQVIAVARTADLVLMMLDAT------------KQDVQRGLLEKELESVGIRLN 110 (119)
Q Consensus 67 ~~~~~~~~~~~~~d~il~Vvd~~------------~~~~~~~~~~~~l~~~~~~~~ 110 (119)
+++.+++.++++||++++|+|++ ||.++++.+..||..++..+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ 136 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETV 136 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 89999999999999999999985 456788888888877765433
No 10
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1.8e-24 Score=161.22 Aligned_cols=117 Identities=27% Similarity=0.426 Sum_probs=102.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC-CeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK-GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
..|+++|.||||||||||+|++.++.++++|++|..|+.+.+.+. +..+.++|+||+.+..+.+.++..+++++++.||
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 379999999999999999999999889999999999999999887 7899999999999888877788899999999999
Q ss_pred EEEEEEeCCC-----CchhHHHHHHHHHHcCCcccCCCCceee
Q psy6249 81 LVLMMLDATK-----QDVQRGLLEKELESVGIRLNKKKPNIYF 118 (119)
Q Consensus 81 ~il~Vvd~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 118 (119)
++++|+|+++ +.+++..+.++|+.+...+..+|..|++
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~ 281 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVA 281 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEE
Confidence 9999999974 3456677888898887766666666554
No 11
>PTZ00258 GTP-binding protein; Provisional
Probab=99.92 E-value=4.8e-25 Score=162.54 Aligned_cols=107 Identities=20% Similarity=0.351 Sum_probs=95.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC-----------------eeEEEEeCCcccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG-----------------ANIQLLDLPGIIEGAAQ 64 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~DtpG~~~~~~~ 64 (119)
++|+++|.||||||||||+|++.+..++++|++|++++.|.+.+.+ .++.++||||+..+.+.
T Consensus 22 ~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~ 101 (390)
T PTZ00258 22 LKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASE 101 (390)
T ss_pred cEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcc
Confidence 6899999999999999999999998999999999999999988753 35999999999988887
Q ss_pred cchHHHHHHHHhcCCCEEEEEEeCC------------CCchhHHHHHHHHHHcCCc
Q psy6249 65 GKGRGRQVIAVARTADLVLMMLDAT------------KQDVQRGLLEKELESVGIR 108 (119)
Q Consensus 65 ~~~~~~~~~~~~~~~d~il~Vvd~~------------~~~~~~~~~~~~l~~~~~~ 108 (119)
..+++.+++.++++||++++|+|++ ||.++++.+..||...+..
T Consensus 102 g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~ 157 (390)
T PTZ00258 102 GEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLE 157 (390)
T ss_pred hhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHH
Confidence 7788999999999999999999985 4567888898998777655
No 12
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.92 E-value=8.1e-25 Score=159.89 Aligned_cols=108 Identities=27% Similarity=0.430 Sum_probs=95.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC-----------------eeEEEEeCCcccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG-----------------ANIQLLDLPGIIEGAAQ 64 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~DtpG~~~~~~~ 64 (119)
++|+++|.||||||||||+|++.+..++++|++|+.++.|.+.+.+ .++.++|+||+.++.+.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 7899999999999999999999998899999999999999988765 25899999999988888
Q ss_pred cchHHHHHHHHhcCCCEEEEEEeCC------------CCchhHHHHHHHHHHcCCcc
Q psy6249 65 GKGRGRQVIAVARTADLVLMMLDAT------------KQDVQRGLLEKELESVGIRL 109 (119)
Q Consensus 65 ~~~~~~~~~~~~~~~d~il~Vvd~~------------~~~~~~~~~~~~l~~~~~~~ 109 (119)
+.++++++++++++||++++|+|++ +|.++++.+..||..++..+
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~ 139 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLET 139 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHH
Confidence 7789999999999999999999995 35678888888887766443
No 13
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=2.5e-24 Score=156.49 Aligned_cols=117 Identities=25% Similarity=0.424 Sum_probs=100.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC-eeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG-ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
..|+++|.||||||||+|+|++.+..+++++++|..++.+.+.+.+ ..+.+|||||+.+..+...++..+++++++.||
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 4799999999999999999999888899999999999999999877 899999999999888777778889999999999
Q ss_pred EEEEEEeCCCC-----chhHHHHHHHHHHcCCcccCCCCceee
Q psy6249 81 LVLMMLDATKQ-----DVQRGLLEKELESVGIRLNKKKPNIYF 118 (119)
Q Consensus 81 ~il~Vvd~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~v~~ 118 (119)
++++|+|+++. .+++..+.+++..+...+.++|..|++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~ 280 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVL 280 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEE
Confidence 99999999853 456777888888776666666555544
No 14
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=3.1e-24 Score=140.98 Aligned_cols=105 Identities=23% Similarity=0.363 Sum_probs=80.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccc--cchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ--GKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~--~~~~~~~~~~~~~~~ 79 (119)
.+|+++|.||||||||||+|+|.+..++++|++|++...|.+.+.+..+.++|+||++...+. ++.+...++. ....
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCC
Confidence 379999999999999999999999999999999999999999999999999999998765332 2233333433 3689
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHHHcCCc
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELESVGIR 108 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~~~~~~ 108 (119)
|++++|+|+++..+++..+. ++...+.+
T Consensus 80 D~ii~VvDa~~l~r~l~l~~-ql~e~g~P 107 (156)
T PF02421_consen 80 DLIIVVVDATNLERNLYLTL-QLLELGIP 107 (156)
T ss_dssp SEEEEEEEGGGHHHHHHHHH-HHHHTTSS
T ss_pred CEEEEECCCCCHHHHHHHHH-HHHHcCCC
Confidence 99999999998766665443 44455544
No 15
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=4.9e-24 Score=157.83 Aligned_cols=116 Identities=26% Similarity=0.440 Sum_probs=98.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC-eeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG-ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.|+|+|+||||||||+|+|++.+..++++|++|+.++.+.+.+.+ ..+.++||||+.+..+...++...++++++.+|+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 799999999999999999999988999999999999999998875 4699999999998877766778889999999999
Q ss_pred EEEEEeCCC-----CchhHHHHHHHHHHcCCcccCCCCceee
Q psy6249 82 VLMMLDATK-----QDVQRGLLEKELESVGIRLNKKKPNIYF 118 (119)
Q Consensus 82 il~Vvd~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 118 (119)
+++|+|++. +.+++..+.+++..+...+..+|..|++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVl 282 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVF 282 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEE
Confidence 999999882 3455667777787776666666665554
No 16
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.91 E-value=3e-24 Score=159.20 Aligned_cols=109 Identities=28% Similarity=0.411 Sum_probs=94.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE------------------------CCeeEEEEeCC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY------------------------KGANIQLLDLP 56 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~~~Dtp 56 (119)
|++|+++|.||||||||||+|++.+..+++++++|..|+.|...+ ....++++|+|
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 689999999999999999999998888899999999999987552 12568899999
Q ss_pred cccccccccchHHHHHHHHhcCCCEEEEEEeCC---------------CCchhHHHHHHHHHHcCCcc
Q psy6249 57 GIIEGAAQGKGRGRQVIAVARTADLVLMMLDAT---------------KQDVQRGLLEKELESVGIRL 109 (119)
Q Consensus 57 G~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~---------------~~~~~~~~~~~~l~~~~~~~ 109 (119)
|+.++.+...+++.++++++++||++++|+|++ +|.++++.+..||..++..+
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~ 148 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGI 148 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHH
Confidence 999888878889999999999999999999997 24668899999998865443
No 17
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.90 E-value=2.9e-23 Score=150.12 Aligned_cols=103 Identities=27% Similarity=0.392 Sum_probs=89.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE------------------------CCeeEEEEeCCccc
Q psy6249 4 LRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY------------------------KGANIQLLDLPGII 59 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~~~DtpG~~ 59 (119)
|+++|.||||||||||+|++....++++|++|..|+.|...+ ....+++|||||+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999999888999999999999987654 22578999999999
Q ss_pred ccccccchHHHHHHHHhcCCCEEEEEEeCCC---------------CchhHHHHHHHHHHcC
Q psy6249 60 EGAAQGKGRGRQVIAVARTADLVLMMLDATK---------------QDVQRGLLEKELESVG 106 (119)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~---------------~~~~~~~~~~~l~~~~ 106 (119)
++.++..+++++++.++++||++++|+|++. |.++++.+..||...+
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d 142 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWI 142 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 8877777888999999999999999999973 4568888888887753
No 18
>KOG1491|consensus
Probab=99.90 E-value=1.6e-23 Score=150.02 Aligned_cols=109 Identities=21% Similarity=0.392 Sum_probs=97.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC-----------------CeeEEEEeCCcccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK-----------------GANIQLLDLPGIIEGAAQ 64 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~~DtpG~~~~~~~ 64 (119)
++++|+|.||||||||||+||......+++|++|++|+.+.+.+. ...++++|++|+..+++.
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~ 100 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASA 100 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCccc
Confidence 689999999999999999999988889999999999999987653 357899999999999999
Q ss_pred cchHHHHHHHHhcCCCEEEEEEeCC------------CCchhHHHHHHHHHHcCCccc
Q psy6249 65 GKGRGRQVIAVARTADLVLMMLDAT------------KQDVQRGLLEKELESVGIRLN 110 (119)
Q Consensus 65 ~~~~~~~~~~~~~~~d~il~Vvd~~------------~~~~~~~~~~~~l~~~~~~~~ 110 (119)
++++++.|+.+++.+|++++|+|++ ||.++++.+.+||...+..+.
T Consensus 101 G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l 158 (391)
T KOG1491|consen 101 GEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFL 158 (391)
T ss_pred CcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999996 457888999888877655433
No 19
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.89 E-value=2.5e-22 Score=132.36 Aligned_cols=114 Identities=29% Similarity=0.452 Sum_probs=87.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe-eEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA-NIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.|+++|++|||||||+|+|++....++..+++|..+..+.+.+++. .+.+|||||+.+.......+...+++.+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999987777777788888898898888876 999999999865544444556677777889999
Q ss_pred EEEEEeCCCC---chhHHHHHHHHHHcCCcccCCCCce
Q psy6249 82 VLMMLDATKQ---DVQRGLLEKELESVGIRLNKKKPNI 116 (119)
Q Consensus 82 il~Vvd~~~~---~~~~~~~~~~l~~~~~~~~~~~~~v 116 (119)
+++|+|++++ .+.+..+.+++..+...+..+|..+
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~iv 119 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIV 119 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEE
Confidence 9999999986 2445555566655543333333333
No 20
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.89 E-value=2.2e-22 Score=143.72 Aligned_cols=106 Identities=28% Similarity=0.369 Sum_probs=84.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccc-hHHHHHHHHh-cC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK-GRGRQVIAVA-RT 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~-~~~~~~~~~~-~~ 78 (119)
.++|++.|+||||||||+++|+++++++++||+||++.+.|.+..++.+++++||||+++..-+++ .+..+....+ .-
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl 247 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHL 247 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHh
Confidence 368999999999999999999999999999999999999999999999999999999998876654 4555533322 34
Q ss_pred CCEEEEEEeCCCC-----chhHHHHHHHHHHcC
Q psy6249 79 ADLVLMMLDATKQ-----DVQRGLLEKELESVG 106 (119)
Q Consensus 79 ~d~il~Vvd~~~~-----~~~~~~~~~~l~~~~ 106 (119)
.++|+|++|++.. ++|...+++.-..+.
T Consensus 248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~ 280 (346)
T COG1084 248 AGVILFLFDPSETCGYSLEEQISLLEEIKELFK 280 (346)
T ss_pred cCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC
Confidence 5789999999964 334444443334444
No 21
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.88 E-value=1.3e-22 Score=148.46 Aligned_cols=107 Identities=24% Similarity=0.375 Sum_probs=94.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECC-----------------eeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKG-----------------ANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~DtpG~~~~~~ 63 (119)
++++++|.||+|||||||+||+... ++++||++|..|+.|.+.+.+ ..+.++|.||+..+++
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999998 899999999999999988754 4689999999999999
Q ss_pred ccchHHHHHHHHhcCCCEEEEEEeCCC------------CchhHHHHHHHHHHcCCc
Q psy6249 64 QGKGRGRQVIAVARTADLVLMMLDATK------------QDVQRGLLEKELESVGIR 108 (119)
Q Consensus 64 ~~~~~~~~~~~~~~~~d~il~Vvd~~~------------~~~~~~~~~~~l~~~~~~ 108 (119)
++.+++++++.+++++|++++|+|+.+ |.++++.+.+||...+..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~ 139 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEF 139 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999963 456777777777665544
No 22
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.87 E-value=2.4e-21 Score=121.32 Aligned_cols=100 Identities=24% Similarity=0.344 Sum_probs=77.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccc--hHHHHHHHHhcCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK--GRGRQVIAVARTA 79 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~--~~~~~~~~~~~~~ 79 (119)
+|+++|.+|||||||+|+|++.+. .++..+++|..+..+.+.+++..+.++||||+.+...... .....+++.+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 689999999999999999998644 6788889999888888888999999999999877543332 2344577777999
Q ss_pred CEEEEEEeCCCCc-hhHHHHHHHH
Q psy6249 80 DLVLMMLDATKQD-VQRGLLEKEL 102 (119)
Q Consensus 80 d~il~Vvd~~~~~-~~~~~~~~~l 102 (119)
|++++|+|+.++. ++...+.+++
T Consensus 81 d~ii~vv~~~~~~~~~~~~~~~~l 104 (116)
T PF01926_consen 81 DLIIYVVDASNPITEDDKNILREL 104 (116)
T ss_dssp SEEEEEEETTSHSHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999987742 2333444444
No 23
>COG1159 Era GTPase [General function prediction only]
Probab=99.86 E-value=4.6e-21 Score=135.56 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=78.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccc-hHHHHHHHHhcCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK-GRGRQVIAVARTAD 80 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~-~~~~~~~~~~~~~d 80 (119)
-|+++|+||||||||+|+|.|.+. .+++.+.||+....|.+..+..++.++||||+.+....-. -+.......+..+|
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvD 87 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVD 87 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCc
Confidence 489999999999999999999998 6788999999999999999999999999999988744432 34455777899999
Q ss_pred EEEEEEeCCCC
Q psy6249 81 LVLMMLDATKQ 91 (119)
Q Consensus 81 ~il~Vvd~~~~ 91 (119)
+++||+|+...
T Consensus 88 lilfvvd~~~~ 98 (298)
T COG1159 88 LILFVVDADEG 98 (298)
T ss_pred EEEEEEecccc
Confidence 99999999984
No 24
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=5.4e-21 Score=141.50 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=85.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccc--cchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ--GKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~--~~~~~~~~~~~~~~ 78 (119)
+.|+++|+||||||||||+|++.+. .++++|++|+++..+...+.+..+.++||+|+.....+ ...+..|.+..+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 4699999999999999999998887 67889999999999999999999999999999765432 33567788889999
Q ss_pred CCEEEEEEeCCCCc-hhHHHHHHHHHHc
Q psy6249 79 ADLVLMMLDATKQD-VQRGLLEKELESV 105 (119)
Q Consensus 79 ~d~il~Vvd~~~~~-~~~~~~~~~l~~~ 105 (119)
||+++||+|+.... .+-+.+.+.|...
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~ 111 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRS 111 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 99999999998742 2223444455443
No 25
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.4e-20 Score=143.23 Aligned_cols=101 Identities=23% Similarity=0.329 Sum_probs=86.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCccccc--ccccchHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEG--AAQGKGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~--~~~~~~~~~~~~~~~~~ 78 (119)
+.+|+++|+||||||||||+|||.+..++++|+.|++...|.+.+++.+++++|+||.+.. .+.++...+.++.. ..
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~-~~ 81 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE-GK 81 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc-CC
Confidence 4589999999999999999999999999999999999999999999999999999998654 45565566666643 56
Q ss_pred CCEEEEEEeCCCCchhHHHHHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
.|+++.|+||++.++.+....+.+
T Consensus 82 ~D~ivnVvDAtnLeRnLyltlQLl 105 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTLQLL 105 (653)
T ss_pred CCEEEEEcccchHHHHHHHHHHHH
Confidence 899999999999877766555444
No 26
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.84 E-value=7.7e-20 Score=129.76 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=77.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccc-hHHHHHHHHhcCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK-GRGRQVIAVARTAD 80 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~-~~~~~~~~~~~~~d 80 (119)
+|+++|+||||||||+|+|++.+. .+++.+++|.....+....++.++.+|||||+.+...... .+...+...++.+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 689999999999999999999876 5678889998887777777778899999999876532221 23334566789999
Q ss_pred EEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 81 LVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 81 ~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
++++|+|+++.....+.+.+.+..
T Consensus 82 vvl~VvD~~~~~~~~~~i~~~l~~ 105 (270)
T TIGR00436 82 LILFVVDSDQWNGDGEFVLTKLQN 105 (270)
T ss_pred EEEEEEECCCCCchHHHHHHHHHh
Confidence 999999999863332444444443
No 27
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.83 E-value=3.4e-20 Score=122.52 Aligned_cols=86 Identities=44% Similarity=0.697 Sum_probs=72.2
Q ss_pred EEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC-CeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEE
Q psy6249 6 VLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK-GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLM 84 (119)
Q Consensus 6 iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~ 84 (119)
++|++|||||||+|+|++....+++++++|..++.+.+.++ +..+.+|||||+.+.....+.+..++.+.++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999887666778889999999988888 89999999999865444334445567777889999999
Q ss_pred EEeCCCC
Q psy6249 85 MLDATKQ 91 (119)
Q Consensus 85 Vvd~~~~ 91 (119)
|+|+++.
T Consensus 81 v~d~~~~ 87 (176)
T cd01881 81 VVDASED 87 (176)
T ss_pred EEeccCC
Confidence 9999986
No 28
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.83 E-value=8.7e-20 Score=133.74 Aligned_cols=104 Identities=29% Similarity=0.341 Sum_probs=79.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE-CCeeEEEEeCCccccccccc-chHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY-KGANIQLLDLPGIIEGAAQG-KGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~-~~~~~~~~~~~~~~ 79 (119)
++|+++|.||||||||+|+|++....+.+.+++|.++....+.+ ++..+.+|||||+....+.. .+.....+..+.+|
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~A 269 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREA 269 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999998766778889999998888888 57899999999986542222 12233456678999
Q ss_pred CEEEEEEeCCCCc--hhHHHHHHHHHHc
Q psy6249 80 DLVLMMLDATKQD--VQRGLLEKELESV 105 (119)
Q Consensus 80 d~il~Vvd~~~~~--~~~~~~~~~l~~~ 105 (119)
|++++|+|++++. ++...+.+.+...
T Consensus 270 Dlil~VvD~s~~~~~~~~~~~~~~L~~l 297 (351)
T TIGR03156 270 DLLLHVVDASDPDREEQIEAVEKVLEEL 297 (351)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHh
Confidence 9999999999873 2333344445444
No 29
>KOG1487|consensus
Probab=99.82 E-value=1.8e-20 Score=130.75 Aligned_cols=117 Identities=61% Similarity=0.883 Sum_probs=111.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLV 82 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 82 (119)
+|.++|.|++||||++..|++...++..+.++|....+|.+.+++.++++.|.||+++++.++.+++.|...-.+.|+++
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli 140 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLI 140 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEEeCCCCchhHHHHHHHHHHcCCcccCCCCceeeC
Q psy6249 83 LMMLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFK 119 (119)
Q Consensus 83 l~Vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (119)
+.|+|+..|..+...++.||+-++++++++||.+.++
T Consensus 141 ~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~k 177 (358)
T KOG1487|consen 141 FIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTK 177 (358)
T ss_pred EEEeeccCcccHHHHHHHhhhcceeeccCCCCCcccc
Confidence 9999999998898999999999999999999988764
No 30
>PRK11058 GTPase HflX; Provisional
Probab=99.80 E-value=6.9e-19 Score=131.75 Aligned_cols=104 Identities=22% Similarity=0.220 Sum_probs=78.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe-eEEEEeCCcccccccc-cchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA-NIQLLDLPGIIEGAAQ-GKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~DtpG~~~~~~~-~~~~~~~~~~~~~~~ 79 (119)
++|+++|.||||||||+|+|++.+..+++.+++|.++....+.+.+. .+.+|||||+....+. ........+..++.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 58999999999999999999988877778889999998888877664 8899999998653221 111223355678999
Q ss_pred CEEEEEEeCCCCc--hhHHHHHHHHHHc
Q psy6249 80 DLVLMMLDATKQD--VQRGLLEKELESV 105 (119)
Q Consensus 80 d~il~Vvd~~~~~--~~~~~~~~~l~~~ 105 (119)
|++++|+|++++. +++..+.+.+...
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~iL~el 305 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNTVLEEI 305 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHHh
Confidence 9999999999873 3433344445444
No 31
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.80 E-value=1.9e-18 Score=113.70 Aligned_cols=90 Identities=28% Similarity=0.423 Sum_probs=67.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccc-hHHHHHHH-HhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK-GRGRQVIA-VARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~-~~~~~~~~-~~~~~ 79 (119)
++|+++|.+|||||||+|+|++....++.++++|..+..+.+.+++..+++|||||..+.....+ .+...... ....+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 58999999999999999999988776666778888888888877788999999999854322111 11122221 12346
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|+++.
T Consensus 81 d~~l~v~d~~~~ 92 (168)
T cd01897 81 AAVLFLFDPSET 92 (168)
T ss_pred CcEEEEEeCCcc
Confidence 899999999975
No 32
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=128.63 Aligned_cols=90 Identities=26% Similarity=0.303 Sum_probs=76.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHH-HHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRG-RQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~-~~~~~~~~~~ 79 (119)
++++++|+||||||||+|+|.+... .+++.|+||++.....+..+|..+.++||+|+-+....-+..+ ...++.+++|
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~A 297 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEA 297 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhC
Confidence 5899999999999999999998876 6789999999999999999999999999999865433322222 2244578999
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|+++||+|++.+
T Consensus 298 DlvL~v~D~~~~ 309 (454)
T COG0486 298 DLVLFVLDASQP 309 (454)
T ss_pred CEEEEEEeCCCC
Confidence 999999999985
No 33
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=4e-18 Score=124.53 Aligned_cols=93 Identities=28% Similarity=0.322 Sum_probs=73.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc-chHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG-KGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~-~~~~~~~~~~~~~~ 79 (119)
.+|+++|.||||||||+|+|.+.+. .+++.+++|.....+.+..++.++.+|||||+.+....- ..+.+..+..+..|
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~a 132 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSA 132 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhC
Confidence 3899999999999999999998776 456677888888888888889999999999986543221 22334455668899
Q ss_pred CEEEEEEeCCCCchh
Q psy6249 80 DLVLMMLDATKQDVQ 94 (119)
Q Consensus 80 d~il~Vvd~~~~~~~ 94 (119)
|++++|+|+++....
T Consensus 133 Dvil~VvD~~~s~~~ 147 (339)
T PRK15494 133 DLVLLIIDSLKSFDD 147 (339)
T ss_pred CEEEEEEECCCCCCH
Confidence 999999999875333
No 34
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.78 E-value=5.6e-18 Score=114.98 Aligned_cols=110 Identities=14% Similarity=0.198 Sum_probs=77.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCC--CCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHH----HHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAAS--YEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQ----VIAV 75 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~----~~~~ 75 (119)
++|+++|.+|||||||+|+|++.+...+. .++.|..++.+...+++..+.++||||+.+.......+... +...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 47999999999999999999988763333 45678888888888899999999999998754322222222 2233
Q ss_pred hcCCCEEEEEEeCCCC-chhHHHHHHHHHHcCCcccC
Q psy6249 76 ARTADLVLMMLDATKQ-DVQRGLLEKELESVGIRLNK 111 (119)
Q Consensus 76 ~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~~~~~~~ 111 (119)
..+.|++++|+|+... .++...++...+.++...++
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~ 117 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLD 117 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHh
Confidence 4788999999999874 23434444444556655544
No 35
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.77 E-value=1.8e-17 Score=108.26 Aligned_cols=95 Identities=11% Similarity=0.138 Sum_probs=68.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.+|+++|++|||||||+|++++.+......+..+.+.....+.+++ ..+.+|||||... ........++.+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-------~~~~~~~~~~~~ 73 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER-------FRSLIPSYIRDS 73 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhccC
Confidence 4899999999999999999998876655566666666666666665 3588999999422 222344567999
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
|++++|+|++++ +.++.+...+..
T Consensus 74 ~~ii~v~d~~~~-~s~~~~~~~~~~ 97 (161)
T cd01861 74 SVAVVVYDITNR-QSFDNTDKWIDD 97 (161)
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHH
Confidence 999999999986 333444444433
No 36
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.77 E-value=7.7e-18 Score=125.94 Aligned_cols=103 Identities=21% Similarity=0.193 Sum_probs=79.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccc-cchHHHHHHHHhcCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ-GKGRGRQVIAVARTAD 80 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~-~~~~~~~~~~~~~~~d 80 (119)
+|+++|.||||||||+|+|++... .+++.+++|.....+.+.+++..+.+|||||+...... ...+..++..+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 589999999999999999998765 46778899999999999999999999999998543221 1234455667889999
Q ss_pred EEEEEEeCCCCchh-HHHHHHHHHHc
Q psy6249 81 LVLMMLDATKQDVQ-RGLLEKELESV 105 (119)
Q Consensus 81 ~il~Vvd~~~~~~~-~~~~~~~l~~~ 105 (119)
++++|+|+++.... ...+.+++...
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~~ 106 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRKS 106 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 99999999875332 23455556544
No 37
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.77 E-value=1.2e-17 Score=113.61 Aligned_cols=104 Identities=25% Similarity=0.275 Sum_probs=73.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe-eEEEEeCCcccccccccc-hHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA-NIQLLDLPGIIEGAAQGK-GRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~DtpG~~~~~~~~~-~~~~~~~~~~~~~ 79 (119)
++|+++|++|||||||+|++++........+++|..+....+.+.+. .+.+|||||+.+...... +.....+..+..+
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 121 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEA 121 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999987755556667777777777777665 899999999865432221 1112233456789
Q ss_pred CEEEEEEeCCCCch--hHHHHHHHHHHc
Q psy6249 80 DLVLMMLDATKQDV--QRGLLEKELESV 105 (119)
Q Consensus 80 d~il~Vvd~~~~~~--~~~~~~~~l~~~ 105 (119)
|++++|+|++++.. +...+.+.+...
T Consensus 122 d~ii~v~D~~~~~~~~~~~~~~~~l~~~ 149 (204)
T cd01878 122 DLLLHVVDASDPDYEEQIETVEKVLKEL 149 (204)
T ss_pred CeEEEEEECCCCChhhHHHHHHHHHHHc
Confidence 99999999998632 233344444443
No 38
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=1e-17 Score=125.59 Aligned_cols=105 Identities=22% Similarity=0.164 Sum_probs=80.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc-chHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG-KGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~-~~~~~~~~~~~~~ 78 (119)
|++|+++|.+|||||||+|+|++.+. .+...+++|.....+.+.+++..+.+|||||+....... ..+..+...++..
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 57999999999999999999998775 467788889888888898999999999999987622211 1234456667899
Q ss_pred CCEEEEEEeCCCCchhH-HHHHHHHHHc
Q psy6249 79 ADLVLMMLDATKQDVQR-GLLEKELESV 105 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~-~~~~~~l~~~ 105 (119)
+|++++|+|++++.... ..+.+++...
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~~ 108 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRKS 108 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHc
Confidence 99999999998853322 2344445443
No 39
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=1.7e-17 Score=125.81 Aligned_cols=104 Identities=20% Similarity=0.172 Sum_probs=78.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc-chHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG-KGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~-~~~~~~~~~~~~~ 78 (119)
+++|+++|.||||||||+|+|++... .+...+++|.+...+.+.+++..+.+|||||+....... ..+..++..++++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 46899999999999999999998764 456788888888888888889999999999975322111 1234445667899
Q ss_pred CCEEEEEEeCCCCch-hHHHHHHHHHH
Q psy6249 79 ADLVLMMLDATKQDV-QRGLLEKELES 104 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~-~~~~~~~~l~~ 104 (119)
||++++|+|+++... ....+.+.+..
T Consensus 118 aD~il~VvD~~~~~s~~~~~i~~~l~~ 144 (472)
T PRK03003 118 ADAVLFVVDATVGATATDEAVARVLRR 144 (472)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999999998622 22334444543
No 40
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.76 E-value=2.3e-17 Score=124.11 Aligned_cols=91 Identities=30% Similarity=0.364 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHH-HHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRG-RQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~-~~~~~~~~~~ 79 (119)
++|+++|.||||||||+|+|++... .+++++++|.+.....+.+++..+.+|||||+.+.....+..+ .....+++++
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~a 283 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQA 283 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhC
Confidence 5899999999999999999998754 5778899999988889999999999999999854322111111 2244677999
Q ss_pred CEEEEEEeCCCCc
Q psy6249 80 DLVLMMLDATKQD 92 (119)
Q Consensus 80 d~il~Vvd~~~~~ 92 (119)
|++++|+|++++.
T Consensus 284 D~il~V~D~s~~~ 296 (442)
T TIGR00450 284 DLVIYVLDASQPL 296 (442)
T ss_pred CEEEEEEECCCCC
Confidence 9999999999863
No 41
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.76 E-value=2.2e-17 Score=130.88 Aligned_cols=104 Identities=21% Similarity=0.300 Sum_probs=79.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc--chHHHHHHH-H--h
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG--KGRGRQVIA-V--A 76 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~--~~~~~~~~~-~--~ 76 (119)
.+|+++|+||||||||+|+|++.+..+++++++|++...+.+.+++.+++++||||..+..... ........+ + .
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~ 83 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhc
Confidence 5899999999999999999999888899999999999999999989999999999987643211 112222222 2 2
Q ss_pred cCCCEEEEEEeCCCCchhHHHHHHHHHHcC
Q psy6249 77 RTADLVLMMLDATKQDVQRGLLEKELESVG 106 (119)
Q Consensus 77 ~~~d~il~Vvd~~~~~~~~~~~~~~l~~~~ 106 (119)
..+|++++|+|+++..+.+. +..++.+.+
T Consensus 84 ~~aD~vI~VvDat~ler~l~-l~~ql~e~g 112 (772)
T PRK09554 84 GDADLLINVVDASNLERNLY-LTLQLLELG 112 (772)
T ss_pred cCCCEEEEEecCCcchhhHH-HHHHHHHcC
Confidence 58999999999998755554 333444443
No 42
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.75 E-value=4.6e-17 Score=107.09 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=64.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||++++.+........+..+.......+..++ ..+.+||+||... +......+++++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 75 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-------FRTITSSYYRGA 75 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh-------HHHHHHHHhCcC
Confidence 5899999999999999999997665433333333333334454554 4678999999432 122334567899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
|++++|+|++++ +.++.+.+++..
T Consensus 76 ~~ii~v~d~~~~-~s~~~l~~~~~~ 99 (166)
T cd01869 76 HGIIIVYDVTDQ-ESFNNVKQWLQE 99 (166)
T ss_pred CEEEEEEECcCH-HHHHhHHHHHHH
Confidence 999999999986 344444444443
No 43
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.75 E-value=4.6e-17 Score=107.63 Aligned_cols=94 Identities=19% Similarity=0.140 Sum_probs=63.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||++++.+........+..+.+.....+..++ ..+.+|||||.. .+......+++.+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~~~~~~~~ 77 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE-------SFRSITRSYYRGA 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH-------HHHHHHHHHhccC
Confidence 5899999999999999999997765333333323333334444444 468899999942 2233344577899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELE 103 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~ 103 (119)
|++++|+|++++ ..++.+..++.
T Consensus 78 d~il~v~d~~~~-~s~~~~~~~~~ 100 (168)
T cd01866 78 AGALLVYDITRR-ETFNHLTSWLE 100 (168)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHH
Confidence 999999999975 34444444443
No 44
>PRK00089 era GTPase Era; Reviewed
Probab=99.75 E-value=2.2e-17 Score=118.17 Aligned_cols=89 Identities=24% Similarity=0.294 Sum_probs=70.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccc-hHHHHHHHHhcCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK-GRGRQVIAVARTAD 80 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~-~~~~~~~~~~~~~d 80 (119)
.|+++|.||||||||+|+|++.+. .+++.+.+|.....+....++.++.++||||+.+...... .+.......+..+|
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D 86 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVD 86 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCC
Confidence 589999999999999999998876 4667777887777777766678999999999876542221 22334556778999
Q ss_pred EEEEEEeCCCC
Q psy6249 81 LVLMMLDATKQ 91 (119)
Q Consensus 81 ~il~Vvd~~~~ 91 (119)
++++|+|+++.
T Consensus 87 ~il~vvd~~~~ 97 (292)
T PRK00089 87 LVLFVVDADEK 97 (292)
T ss_pred EEEEEEeCCCC
Confidence 99999999984
No 45
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.75 E-value=6.6e-17 Score=105.67 Aligned_cols=93 Identities=20% Similarity=0.154 Sum_probs=63.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|++|||||||++++.+........+..+.......+..++ ..+.+||+||... ........++.+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~ 73 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER-------FRSITSSYYRGA 73 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHhCCC
Confidence 4899999999999999999997765333333333333444455555 4788999999422 122334467899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
|++++|+|++++ ..++.+..++
T Consensus 74 d~~ilv~d~~~~-~s~~~~~~~l 95 (164)
T smart00175 74 VGALLVYDITNR-ESFENLKNWL 95 (164)
T ss_pred CEEEEEEECCCH-HHHHHHHHHH
Confidence 999999999986 3334443343
No 46
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.75 E-value=6.1e-17 Score=107.23 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=66.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLV 82 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 82 (119)
+|+++|++|||||||++++++... . ...+|.......+.+++..+.+||+||... ....+..++++||++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~-~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~a~~i 70 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--K-KVAPTVGFTPTKLRLDKYEVCIFDLGGGAN-------FRGIWVNYYAEAHGL 70 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--c-cccCcccceEEEEEECCEEEEEEECCCcHH-------HHHHHHHHHcCCCEE
Confidence 589999999999999999987521 1 123344455556777888999999999532 233455688999999
Q ss_pred EEEEeCCCCchhHHHHHHHHHH
Q psy6249 83 LMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 83 l~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
++|+|++++. .++.+..++..
T Consensus 71 i~V~D~s~~~-s~~~~~~~l~~ 91 (167)
T cd04161 71 VFVVDSSDDD-RVQEVKEILRE 91 (167)
T ss_pred EEEEECCchh-HHHHHHHHHHH
Confidence 9999999873 45555555543
No 47
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.75 E-value=6.1e-17 Score=106.67 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=63.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
++||+++|.+|||||||++++.+.+......+..........+..++ ..+.+|||||... +......++++
T Consensus 1 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-------~~~~~~~~~~~ 73 (165)
T cd01865 1 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER-------YRTITTAYYRG 73 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHccC
Confidence 47999999999999999999997765322222111111122233333 5689999999432 22334567899
Q ss_pred CCEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
+|++++|+|++++ +.++.+.+++..
T Consensus 74 ~~~~l~v~d~~~~-~s~~~~~~~~~~ 98 (165)
T cd01865 74 AMGFILMYDITNE-ESFNAVQDWSTQ 98 (165)
T ss_pred CcEEEEEEECCCH-HHHHHHHHHHHH
Confidence 9999999999986 445555554443
No 48
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.75 E-value=6.2e-17 Score=106.30 Aligned_cols=94 Identities=22% Similarity=0.178 Sum_probs=64.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++.+........+..+.......+..++ ..+.+||+||... +......+++.+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~ 76 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER-------YRAITSAYYRGA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHHCCC
Confidence 5899999999999999999997765444444444444444555555 4688999999532 122233467899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELE 103 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~ 103 (119)
+++++|+|++++ ..++.+.+++.
T Consensus 77 ~~~i~v~d~~~~-~s~~~~~~~~~ 99 (165)
T cd01868 77 VGALLVYDITKK-QTFENVERWLK 99 (165)
T ss_pred CEEEEEEECcCH-HHHHHHHHHHH
Confidence 999999999975 33444444443
No 49
>COG2262 HflX GTPases [General function prediction only]
Probab=99.74 E-value=2.6e-17 Score=120.69 Aligned_cols=105 Identities=24% Similarity=0.273 Sum_probs=88.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC-CeeEEEEeCCccccccccc-chHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK-GANIQLLDLPGIIEGAAQG-KGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~-~~~~~~~~~~~~~~ 79 (119)
+.|+++|+.|||||||||+|++....+.+..|.|.+|+...+... +..+.+-||-|++..-+.+ ......+++...++
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~a 272 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEA 272 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcC
Confidence 589999999999999999999988888888999999999999887 6889999999998875544 35566788889999
Q ss_pred CEEEEEEeCCCC--chhHHHHHHHHHHcC
Q psy6249 80 DLVLMMLDATKQ--DVQRGLLEKELESVG 106 (119)
Q Consensus 80 d~il~Vvd~~~~--~~~~~~~~~~l~~~~ 106 (119)
|++++|+|+++| .++++...+.|...+
T Consensus 273 DlllhVVDaSdp~~~~~~~~v~~vL~el~ 301 (411)
T COG2262 273 DLLLHVVDASDPEILEKLEAVEDVLAEIG 301 (411)
T ss_pred CEEEEEeecCChhHHHHHHHHHHHHHHcC
Confidence 999999999998 345566666666654
No 50
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.74 E-value=8.7e-17 Score=106.13 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=63.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.+|+++|.+|||||||++++.+........+..........+..++ ..+.+|||||... +......+++++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-------~~~~~~~~~~~a 76 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER-------FRTITTAYYRGA 76 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHH-------HHHHHHHHhCCC
Confidence 5899999999999999999997765333222222222333444554 4678999999422 122233567899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
|++++|+|++++ +.++.+.+++..
T Consensus 77 d~~i~v~d~~~~-~s~~~~~~~~~~ 100 (167)
T cd01867 77 MGIILVYDITDE-KSFENIRNWMRN 100 (167)
T ss_pred CEEEEEEECcCH-HHHHhHHHHHHH
Confidence 999999999886 445555555443
No 51
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.73 E-value=1.5e-16 Score=103.84 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc-c--CCCCCceeeeeeeEEEEC-CeeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE-A--ASYEFTTLTCIPGVIEYK-GANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~-~--~~~~~~t~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
+.|+++|.+|||||||+|+|++.... . ...+++|.......+.+. +..+.+|||||..+ +...+..+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~~~~~~~~~~ 73 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------FIKNMLAGAG 73 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------HHHHHHhhhh
Confidence 46899999999999999999975321 1 123455666655666665 77899999999522 2334556678
Q ss_pred CCCEEEEEEeCCCC
Q psy6249 78 TADLVLMMLDATKQ 91 (119)
Q Consensus 78 ~~d~il~Vvd~~~~ 91 (119)
.+|++++|+|+++.
T Consensus 74 ~ad~ii~V~d~~~~ 87 (164)
T cd04171 74 GIDLVLLVVAADEG 87 (164)
T ss_pred cCCEEEEEEECCCC
Confidence 99999999999873
No 52
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.73 E-value=1.2e-16 Score=105.10 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=66.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccc----CCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEA----ASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+|+++|++|||||||+|+|++..... .....+|.....+.+.+++..+.+|||||... +...+..+++.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 73 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES-------LRSLWDKYYAE 73 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh-------hHHHHHHHhCC
Confidence 58999999999999999998644321 12234566666777888889999999999643 22234456799
Q ss_pred CCEEEEEEeCCCCchhHHHHHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
+|++++|+|++++. .+.....++
T Consensus 74 ~~~~v~vvd~~~~~-~~~~~~~~~ 96 (167)
T cd04160 74 CHAIIYVIDSTDRE-RFEESKSAL 96 (167)
T ss_pred CCEEEEEEECchHH-HHHHHHHHH
Confidence 99999999998862 333333343
No 53
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.73 E-value=1.3e-16 Score=105.64 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=66.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLV 82 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 82 (119)
+|+++|.+|||||||++++.+... .. +.+|.......+.+.+..+.+|||||.... ...+..+++.+|++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~-------~~~~~~~~~~ad~i 70 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKNLKFTIWDVGGKHKL-------RPLWKHYYLNTQAV 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECCEEEEEEECCCChhc-------chHHHHHhccCCEE
Confidence 689999999999999999987642 22 344555555567777889999999996432 22345577999999
Q ss_pred EEEEeCCCCchhHHHHHHHHHH
Q psy6249 83 LMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 83 l~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
++|+|++++ ..++.+..++..
T Consensus 71 i~V~D~s~~-~s~~~~~~~~~~ 91 (169)
T cd04158 71 VFVVDSSHR-DRVSEAHSELAK 91 (169)
T ss_pred EEEEeCCcH-HHHHHHHHHHHH
Confidence 999999986 334444444433
No 54
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.73 E-value=1.7e-16 Score=106.64 Aligned_cols=90 Identities=17% Similarity=0.140 Sum_probs=66.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.+|+++|.+|||||||+|++.+..... + .+|..+....+.+++.++.+||+||.... ...+..++.++|+
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~~--~-~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~ad~ 87 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLAQ--H-QPTQHPTSEELAIGNIKFTTFDLGGHQQA-------RRLWKDYFPEVNG 87 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc--c-CCccccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHhCCCCE
Confidence 689999999999999999999765421 1 23555666777778889999999996432 2234467899999
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l 102 (119)
+++|+|++++ ..+.....++
T Consensus 88 ii~vvD~~~~-~~~~~~~~~l 107 (184)
T smart00178 88 IVYLVDAYDK-ERFAESKREL 107 (184)
T ss_pred EEEEEECCcH-HHHHHHHHHH
Confidence 9999999986 3333444344
No 55
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=1.7e-16 Score=104.36 Aligned_cols=93 Identities=11% Similarity=0.111 Sum_probs=61.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||++++.+........+....+.....+.+++ ..+.+|||||... +.......++.+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~~~~ 76 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER-------FRTITQSYYRSA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHhccC
Confidence 6899999999999999999986554222212222233334455555 4788999999422 222344567899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
|++++|+|++++ ..++.+..++
T Consensus 77 d~~llv~d~~~~-~s~~~~~~~~ 98 (165)
T cd01864 77 NGAIIAYDITRR-SSFESVPHWI 98 (165)
T ss_pred CEEEEEEECcCH-HHHHhHHHHH
Confidence 999999999986 3344444443
No 56
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.73 E-value=2.5e-16 Score=101.90 Aligned_cols=90 Identities=23% Similarity=0.270 Sum_probs=69.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccc-hHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK-GRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~-~~~~~~~~~~~~~ 79 (119)
++|+++|++|||||||+|++++... .+.+.+++|.......+...+..+.+|||||..+...... .........+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 5899999999999999999998764 4566777777777777777888999999999865432211 1122344567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 82 ~~~v~v~d~~~~ 93 (157)
T cd04164 82 DLVLFVIDASRG 93 (157)
T ss_pred CEEEEEEECCCC
Confidence 999999999975
No 57
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.73 E-value=6.8e-17 Score=104.66 Aligned_cols=87 Identities=23% Similarity=0.221 Sum_probs=67.6
Q ss_pred EEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc-chHHHHHHHHhcCCCEE
Q psy6249 5 RVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG-KGRGRQVIAVARTADLV 82 (119)
Q Consensus 5 ~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~-~~~~~~~~~~~~~~d~i 82 (119)
+++|.+|||||||+|+|++... ..+..+++|...........+..+.+|||||+.+..... ..+...+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 5799999999999999998764 455667778777777777888999999999986653311 12333455677899999
Q ss_pred EEEEeCCCC
Q psy6249 83 LMMLDATKQ 91 (119)
Q Consensus 83 l~Vvd~~~~ 91 (119)
++|+|+.++
T Consensus 81 i~v~d~~~~ 89 (157)
T cd01894 81 LFVVDGREG 89 (157)
T ss_pred EEEEecccc
Confidence 999999875
No 58
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.73 E-value=7.6e-17 Score=121.62 Aligned_cols=90 Identities=24% Similarity=0.266 Sum_probs=72.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchH-HHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGR-GRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~-~~~~~~~~~~~ 79 (119)
++|+++|.||||||||+|+|++.+. .+++.+++|.+.....+.+++..+.+|||||+.+....-+.. ....+.+++++
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~a 295 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEA 295 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhC
Confidence 5899999999999999999998765 467788999888888888899999999999985422111111 12345678999
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 296 D~il~VvD~s~~ 307 (449)
T PRK05291 296 DLVLLVLDASEP 307 (449)
T ss_pred CEEEEEecCCCC
Confidence 999999999986
No 59
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.73 E-value=1.1e-16 Score=112.60 Aligned_cols=112 Identities=17% Similarity=0.217 Sum_probs=77.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc---chHHHHHHHHh
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG---KGRGRQVIAVA 76 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~---~~~~~~~~~~~ 76 (119)
.++|+++|.+|||||||+|+|++... .++.+.++|..........++..+.+|||||+.+..... ........+++
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l 110 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYL 110 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHH
Confidence 36899999999999999999998775 556666777777777777888999999999997653221 11222223333
Q ss_pred --cCCCEEEEEEeCCCC---chhHHHHHHHHHHcCCcccCC
Q psy6249 77 --RTADLVLMMLDATKQ---DVQRGLLEKELESVGIRLNKK 112 (119)
Q Consensus 77 --~~~d~il~Vvd~~~~---~~~~~~~~~~l~~~~~~~~~~ 112 (119)
...|++++|...... ..+...+...-+.++..++++
T Consensus 111 ~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~ 151 (249)
T cd01853 111 KKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRN 151 (249)
T ss_pred hccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhC
Confidence 367899999766643 233344444445677766654
No 60
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.73 E-value=1.9e-16 Score=103.43 Aligned_cols=81 Identities=12% Similarity=0.160 Sum_probs=58.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLV 82 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 82 (119)
+|+++|.+|||||||++++++.......+ .+|.......+...+..+.+|||||..+. ...+..+++.+|++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~-~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~d~i 72 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQII-VPTVGFNVESFEKGNLSFTAFDMSGQGKY-------RGLWEHYYKNIQGI 72 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCccee-cCccccceEEEEECCEEEEEEECCCCHhh-------HHHHHHHHccCCEE
Confidence 58999999999999999999764322222 22333333445567788999999995432 22334567899999
Q ss_pred EEEEeCCCC
Q psy6249 83 LMMLDATKQ 91 (119)
Q Consensus 83 l~Vvd~~~~ 91 (119)
++|+|++++
T Consensus 73 i~v~D~~~~ 81 (162)
T cd04157 73 IFVIDSSDR 81 (162)
T ss_pred EEEEeCCcH
Confidence 999999986
No 61
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.73 E-value=1.6e-16 Score=108.28 Aligned_cols=98 Identities=8% Similarity=0.088 Sum_probs=62.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCccccccccc-chHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQG-KGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~-~~~~~~~~~~~~~ 78 (119)
.+|+++|.+|||||||++++.+........|..+.......+.+++ ..+.+|||||..+..... .++.......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 4899999999999999999997654333233322222233455566 467799999975432111 1111223346789
Q ss_pred CCEEEEEEeCCCCchhHHHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLLEK 100 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~~ 100 (119)
+|++++|+|++++ +.++.+..
T Consensus 81 ad~iilv~D~~~~-~S~~~~~~ 101 (198)
T cd04142 81 SRAFILVYDICSP-DSFHYVKL 101 (198)
T ss_pred CCEEEEEEECCCH-HHHHHHHH
Confidence 9999999999986 34444433
No 62
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.73 E-value=2.7e-16 Score=101.40 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=63.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC--CeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK--GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++.+........+..........+... ...+.+||+||... ........++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~ 73 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-------FRSITPSYYRGA 73 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH-------HHHHHHHHhcCC
Confidence 489999999999999999999877644433333333333344443 36788999999532 122344567899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
|++++|+|++++ +.++.+...+
T Consensus 74 d~ii~v~d~~~~-~~~~~~~~~~ 95 (159)
T cd00154 74 HGAILVYDITNR-ESFENLDKWL 95 (159)
T ss_pred CEEEEEEECCCH-HHHHHHHHHH
Confidence 999999999985 3344444444
No 63
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.72 E-value=2.4e-16 Score=103.06 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
+||+++|.+|||||||+++|.+........+..+.......+.+++ ..+.+||+||... +......+++.+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~~ 73 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-------FRSVTRSYYRGA 73 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHH-------HHHhHHHHhcCC
Confidence 5899999999999999999997765333322222223333344444 4678999999532 122344567899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELE 103 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~ 103 (119)
|++++|+|++++ +.++.+..++.
T Consensus 74 ~~~i~v~d~~~~-~s~~~~~~~~~ 96 (161)
T cd04113 74 AGALLVYDITNR-TSFEALPTWLS 96 (161)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHH
Confidence 999999999986 33444444443
No 64
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.72 E-value=7.8e-17 Score=104.71 Aligned_cols=87 Identities=21% Similarity=0.323 Sum_probs=67.3
Q ss_pred EEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccc--cchHHHHHHHHhcCCCEEE
Q psy6249 6 VLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ--GKGRGRQVIAVARTADLVL 83 (119)
Q Consensus 6 iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~--~~~~~~~~~~~~~~~d~il 83 (119)
++|.+|||||||+|++++....++.++++|.......+.+++..+.+|||||..+.... ...+...+... ..+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEE
Confidence 58999999999999999877667778888888888888888889999999998654322 11122233322 5899999
Q ss_pred EEEeCCCCch
Q psy6249 84 MMLDATKQDV 93 (119)
Q Consensus 84 ~Vvd~~~~~~ 93 (119)
+|+|++++..
T Consensus 80 ~v~d~~~~~~ 89 (158)
T cd01879 80 NVVDATNLER 89 (158)
T ss_pred EEeeCCcchh
Confidence 9999998633
No 65
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=1.4e-16 Score=125.77 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=78.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc-chHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG-KGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~-~~~~~~~~~~~~~~ 79 (119)
++|+++|.||||||||+|+|++.+. .++..+++|.+...+...+++..+.+|||||+....... ..+..+...+++.|
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 355 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLA 355 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhC
Confidence 5899999999999999999998765 566788999988888888889999999999976432211 12445566678999
Q ss_pred CEEEEEEeCCCCchhH-HHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQR-GLLEKELES 104 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~-~~~~~~l~~ 104 (119)
|++++|+|+++..... ..+.+.++.
T Consensus 356 D~iL~VvDa~~~~~~~d~~i~~~Lr~ 381 (712)
T PRK09518 356 DAVVFVVDGQVGLTSTDERIVRMLRR 381 (712)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999998753332 234455544
No 66
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.72 E-value=2.8e-16 Score=108.07 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=57.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC---CeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK---GANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+||+++|.+|||||||+|++.+........+..+.+.....+.+. ...+.+|||||.... ...+..+++.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-------~~l~~~~~~~ 73 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG-------GKMLDKYIYG 73 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH-------HHHHHHHhhc
Confidence 589999999999999999998765433222333333333445443 357899999994221 1223346789
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|++++
T Consensus 74 ad~iilV~D~t~~ 86 (215)
T cd04109 74 AHAVFLVYDVTNS 86 (215)
T ss_pred CCEEEEEEECCCH
Confidence 9999999999986
No 67
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.72 E-value=2.4e-16 Score=107.79 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=63.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||++++..........+..+.+.....+.+++ ..+.+|||+|... +...+..+++++
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~-------~~~l~~~y~~~a 73 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQER-------FNSITSAYYRSA 73 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchh-------hHHHHHHHhcCC
Confidence 4799999999999999999986654322222222333344566665 5678999999532 223344578999
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELE 103 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~ 103 (119)
|++++|+|++++ +.++.+..++.
T Consensus 74 d~iIlVfDvtd~-~Sf~~l~~w~~ 96 (202)
T cd04120 74 KGIILVYDITKK-ETFDDLPKWMK 96 (202)
T ss_pred CEEEEEEECcCH-HHHHHHHHHHH
Confidence 999999999997 44444444443
No 68
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.72 E-value=2.4e-16 Score=103.59 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=63.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
+||+++|.+|||||||++++...... . + .+|.......+.+....+.+|||||... ....+..++++||+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~-~-~pt~g~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ad~ 70 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-T-T-IPTIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQG 70 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-c-c-CCCCCcceEEEEECCEEEEEEECCCCHh-------HHHHHHHHhcCCCE
Confidence 58999999999999999999754432 2 2 2333444445666778899999999532 22234457899999
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l 102 (119)
+++|+|++++ ..++.+.+++
T Consensus 71 ~i~v~D~~~~-~s~~~~~~~~ 90 (159)
T cd04150 71 LIFVVDSNDR-ERIGEAREEL 90 (159)
T ss_pred EEEEEeCCCH-HHHHHHHHHH
Confidence 9999999986 2344444444
No 69
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.72 E-value=2.8e-16 Score=104.63 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=65.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.+|+++|++|||||||+++++..... . ..+|.......+.+++..+.+||+||... ....+..+++.+|+
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d~ 85 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV-H--TSPTIGSNVEEIVYKNIRFLMWDIGGQES-------LRSSWNTYYTNTDA 85 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC-C--cCCccccceEEEEECCeEEEEEECCCCHH-------HHHHHHHHhhcCCE
Confidence 58999999999999999999865542 1 23455555666777788999999999532 23334557789999
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l 102 (119)
+++|+|++++. .+....+++
T Consensus 86 vi~V~D~s~~~-~~~~~~~~l 105 (174)
T cd04153 86 VILVIDSTDRE-RLPLTKEEL 105 (174)
T ss_pred EEEEEECCCHH-HHHHHHHHH
Confidence 99999999862 333333344
No 70
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.72 E-value=2.7e-16 Score=103.60 Aligned_cols=92 Identities=23% Similarity=0.208 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeee--eeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCI--PGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
+||+++|.+|||||||++++.+.... ..++. |.... ...+..++ ..+.+|||||... +......+++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~ 73 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPH-TIGVEFGTRIIEVNGQKIKLQIWDTAGQER-------FRAVTRSYYR 73 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCc-ccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhc
Confidence 58999999999999999999876542 22222 22222 22334444 4678999999432 2223445779
Q ss_pred CCCEEEEEEeCCCCchhHHHHHHHHH
Q psy6249 78 TADLVLMMLDATKQDVQRGLLEKELE 103 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~~~~~~~~~~l~ 103 (119)
++|++++|+|++++ +.++.+.+++.
T Consensus 74 ~~~~~ilv~d~~~~-~s~~~~~~~~~ 98 (166)
T cd04122 74 GAAGALMVYDITRR-STYNHLSSWLT 98 (166)
T ss_pred CCCEEEEEEECCCH-HHHHHHHHHHH
Confidence 99999999999987 44444544443
No 71
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=8.4e-17 Score=108.63 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=71.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCC--cccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccc-cc-----cchHHHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQ--SEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGA-AQ-----GKGRGRQVI 73 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~-~~-----~~~~~~~~~ 73 (119)
+.|+|+|++|||||||||+|++.+ ..++..|+.|...+...+ ++ .+.++|+||+.-.. ++ |..+..+++
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cC-cEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999977 478889999987666554 32 38899999984321 11 212223344
Q ss_pred HHhcCCCEEEEEEeCCCCchhHH-HHHHHHHHcCCc
Q psy6249 74 AVARTADLVLMMLDATKQDVQRG-LLEKELESVGIR 108 (119)
Q Consensus 74 ~~~~~~d~il~Vvd~~~~~~~~~-~~~~~l~~~~~~ 108 (119)
+.-.+-.++++++|+..+..+.+ .+.+.+...+.+
T Consensus 102 ~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~ 137 (200)
T COG0218 102 EKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIP 137 (200)
T ss_pred hhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCC
Confidence 33345678999999998644332 344455555544
No 72
>KOG0073|consensus
Probab=99.72 E-value=1.3e-16 Score=104.30 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=66.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
+++|.++|+.||||||+++++.+... +...+|...+...+.+++.++++||..|... ++..|.+|+..+|
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~-------lr~~W~nYfestd 85 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGFQIKTLEYKGYTLNIWDVGGQKT-------LRSYWKNYFESTD 85 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCc---cccCCccceeeEEEEecceEEEEEEcCCcch-------hHHHHHHhhhccC
Confidence 57999999999999999999987663 2234566777788889999999999999433 3445567889999
Q ss_pred EEEEEEeCCCC
Q psy6249 81 LVLMMLDATKQ 91 (119)
Q Consensus 81 ~il~Vvd~~~~ 91 (119)
++|||+|++|+
T Consensus 86 glIwvvDssD~ 96 (185)
T KOG0073|consen 86 GLIWVVDSSDR 96 (185)
T ss_pred eEEEEEECchH
Confidence 99999999987
No 73
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.72 E-value=3e-16 Score=105.38 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=66.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||++++...... .+ .+|...+...+.+++..+.+||+||... ....+..+++++|+
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~--~~-~pt~g~~~~~~~~~~~~~~i~D~~Gq~~-------~~~~~~~~~~~a~~ 87 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQG 87 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCc--cc-cCCcceeEEEEEECCEEEEEEECCCCHH-------HHHHHHHHhccCCE
Confidence 58999999999999999999854432 11 2344444455667788999999999422 23344557899999
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHc
Q psy6249 82 VLMMLDATKQDVQRGLLEKELESV 105 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l~~~ 105 (119)
+++|+|++++ +.++.+.+++..+
T Consensus 88 iI~V~D~s~~-~s~~~~~~~l~~~ 110 (181)
T PLN00223 88 LIFVVDSNDR-DRVVEARDELHRM 110 (181)
T ss_pred EEEEEeCCcH-HHHHHHHHHHHHH
Confidence 9999999986 3445555555443
No 74
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.72 E-value=9.5e-17 Score=107.33 Aligned_cols=104 Identities=21% Similarity=0.241 Sum_probs=73.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.+|+++|++||||||+++.|....... ..+|.+.+...+.+++..+++||.+|....++.| ..++..+|+
T Consensus 15 ~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w-------~~y~~~~~~ 84 (175)
T PF00025_consen 15 IKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLW-------KSYFQNADG 84 (175)
T ss_dssp EEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGG-------GGGHTTESE
T ss_pred EEEEEECCCccchHHHHHHhhhccccc---cCcccccccceeeeCcEEEEEEeccccccccccc-------eeeccccce
Confidence 589999999999999999998654321 3345667777788899999999999964433323 357789999
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHc-CCcccCCCCce
Q psy6249 82 VLMMLDATKQDVQRGLLEKELESV-GIRLNKKKPNI 116 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l~~~-~~~~~~~~~~v 116 (119)
++||+|++++ +.+....++|..+ ...-.+..|.+
T Consensus 85 iIfVvDssd~-~~l~e~~~~L~~ll~~~~~~~~piL 119 (175)
T PF00025_consen 85 IIFVVDSSDP-ERLQEAKEELKELLNDPELKDIPIL 119 (175)
T ss_dssp EEEEEETTGG-GGHHHHHHHHHHHHTSGGGTTSEEE
T ss_pred eEEEEecccc-eeecccccchhhhcchhhcccceEE
Confidence 9999999987 3455555555443 33333334433
No 75
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.72 E-value=4.2e-16 Score=104.71 Aligned_cols=80 Identities=19% Similarity=0.198 Sum_probs=62.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.+|+++|++|||||||++++++.... ...+|..+..+.+.+++..+.+||+||... ....+..+++++|+
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ad~ 89 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGNIKFKTFDLGGHEQ-------ARRLWKDYFPEVDG 89 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHhccCCE
Confidence 58999999999999999999976542 123455666777888889999999999532 12334557799999
Q ss_pred EEEEEeCCCC
Q psy6249 82 VLMMLDATKQ 91 (119)
Q Consensus 82 il~Vvd~~~~ 91 (119)
+++|+|+++.
T Consensus 90 iilV~D~~~~ 99 (190)
T cd00879 90 IVFLVDAADP 99 (190)
T ss_pred EEEEEECCcH
Confidence 9999999986
No 76
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.72 E-value=2.9e-16 Score=104.18 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=62.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||++++...... .+ .+|.......+......+.+|||||... +...+..+++++|+
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~~--~~-~~t~g~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~a~~ 79 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSV--TT-IPTVGFNVETVTYKNVKFNVWDVGGQDK-------IRPLWRHYYTGTQG 79 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCCc--cc-cCCcccceEEEEECCEEEEEEECCCCHH-------HHHHHHHHhccCCE
Confidence 58999999999999999999854431 11 2233334444556778899999999532 22234457799999
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l 102 (119)
+++|+|++++ ..++.+.+++
T Consensus 80 ii~v~D~t~~-~s~~~~~~~~ 99 (168)
T cd04149 80 LIFVVDSADR-DRIDEARQEL 99 (168)
T ss_pred EEEEEeCCch-hhHHHHHHHH
Confidence 9999999986 2344444444
No 77
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.71 E-value=4.9e-16 Score=101.66 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=56.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC--CeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK--GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.+|+++|.+|||||||+|++++........+....+.....+..+ ...+.+|||||... .......+++.+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~ 73 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-------YLEVRNEFYKDT 73 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHH-------HHHHHHHHhccC
Confidence 489999999999999999999776432222222222222234443 35788999999532 112233466899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 74 d~~ilv~D~~~~ 85 (168)
T cd04119 74 QGVLLVYDVTDR 85 (168)
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 78
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.71 E-value=4.3e-16 Score=103.68 Aligned_cols=95 Identities=15% Similarity=0.088 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC------------CeeEEEEeCCcccccccccchHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK------------GANIQLLDLPGIIEGAAQGKGRG 69 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~------------~~~~~~~DtpG~~~~~~~~~~~~ 69 (119)
+||+++|.+|||||||++++.+........+....+.....+.+. ...+.+|||||..+ +.
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~ 77 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER-------FR 77 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------HH
Confidence 589999999999999999998765422222211112222223322 25788999999422 22
Q ss_pred HHHHHHhcCCCEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 70 RQVIAVARTADLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 70 ~~~~~~~~~~d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
.....+++++|++++|+|++++ +.+..+.+++..
T Consensus 78 ~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~ 111 (180)
T cd04127 78 SLTTAFFRDAMGFLLIFDLTNE-QSFLNVRNWMSQ 111 (180)
T ss_pred HHHHHHhCCCCEEEEEEECCCH-HHHHHHHHHHHH
Confidence 3344577999999999999986 444445544443
No 79
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.71 E-value=3.8e-16 Score=101.41 Aligned_cols=104 Identities=21% Similarity=0.214 Sum_probs=71.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccch-HHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKG-RGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~-~~~~~~~~~~~ 78 (119)
+++|+++|.+|||||||+|++++... .....+.++...........+..+.+|||||+......... ........+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999998765 33444555555555555556678999999998654332221 22234456789
Q ss_pred CCEEEEEEeCCCC-chhHHHHHHHHHH
Q psy6249 79 ADLVLMMLDATKQ-DVQRGLLEKELES 104 (119)
Q Consensus 79 ~d~il~Vvd~~~~-~~~~~~~~~~l~~ 104 (119)
+|++++|+|++++ ......+.+.+..
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~ 109 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILELLKK 109 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHH
Confidence 9999999999986 2233333344433
No 80
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=6e-16 Score=101.39 Aligned_cols=91 Identities=23% Similarity=0.305 Sum_probs=69.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHH----HHHHHH
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRG----RQVIAV 75 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~----~~~~~~ 75 (119)
.++|+++|.+|+|||||+|+|++... .....++++.......+..++..+.+|||||+....+...... ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 36899999999999999999997653 4455677777776677778888899999999865533222111 223456
Q ss_pred hcCCCEEEEEEeCCCC
Q psy6249 76 ARTADLVLMMLDATKQ 91 (119)
Q Consensus 76 ~~~~d~il~Vvd~~~~ 91 (119)
+..+|++++|+|++++
T Consensus 82 ~~~~d~vi~v~d~~~~ 97 (174)
T cd01895 82 IERADVVLLVIDATEG 97 (174)
T ss_pred HhhcCeEEEEEeCCCC
Confidence 7899999999999886
No 81
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.70 E-value=6.5e-16 Score=103.05 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=63.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||++++...... .+ .+|.......+.++...+.+|||||... ....+..++++||+
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~ad~ 83 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGESV--TT-IPTIGFNVETVTYKNISFTVWDVGGQDK-------IRPLWRHYYTNTQG 83 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC--Cc-CCccccceEEEEECCEEEEEEECCCChh-------hHHHHHHHhCCCCE
Confidence 68999999999999999999644331 11 2344444445566778899999999533 12234456799999
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKELE 103 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l~ 103 (119)
+++|+|++++ ..++...+++.
T Consensus 84 ii~v~D~t~~-~s~~~~~~~l~ 104 (175)
T smart00177 84 LIFVVDSNDR-DRIDEAREELH 104 (175)
T ss_pred EEEEEECCCH-HHHHHHHHHHH
Confidence 9999999986 33444444443
No 82
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.70 E-value=5.8e-16 Score=101.19 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=61.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC----CeeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK----GANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
+||+++|.+|||||||++++++........+..........+.+. ...+.+|||||..+ .......+++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~ 73 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-------FDAITKAYYR 73 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-------HHHhHHHHhc
Confidence 589999999999999999999765422222221122222233333 35789999999422 2223445779
Q ss_pred CCCEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 78 TADLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
++|++++|+|++++ +.++.+..+++.
T Consensus 74 ~~~~~v~v~d~~~~-~s~~~l~~~~~~ 99 (162)
T cd04106 74 GAQACILVFSTTDR-ESFEAIESWKEK 99 (162)
T ss_pred CCCEEEEEEECCCH-HHHHHHHHHHHH
Confidence 99999999999986 344444444433
No 83
>KOG1423|consensus
Probab=99.70 E-value=1.6e-16 Score=113.08 Aligned_cols=90 Identities=20% Similarity=0.258 Sum_probs=76.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccch-HH----HHHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKG-RG----RQVIAV 75 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~-~~----~~~~~~ 75 (119)
+.|+++|.||||||||.|.+.|.+. +++....||+....|.+.-+..++.++||||++......+. .. ...+..
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a 152 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDA 152 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHH
Confidence 4799999999999999999999887 77888999999999999999999999999999876443321 12 235567
Q ss_pred hcCCCEEEEEEeCCCC
Q psy6249 76 ARTADLVLMMLDATKQ 91 (119)
Q Consensus 76 ~~~~d~il~Vvd~~~~ 91 (119)
+..||.|++|+|++++
T Consensus 153 ~q~AD~vvVv~Das~t 168 (379)
T KOG1423|consen 153 AQNADCVVVVVDASAT 168 (379)
T ss_pred HhhCCEEEEEEeccCC
Confidence 8999999999999975
No 84
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.70 E-value=5.4e-16 Score=104.70 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCcee-eeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTL-TCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~-~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+||+++|.+|||||||++++.+.......+..++. ......+.+++ ..+.+|||||... +......+++.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~ 73 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER-------FRSVTHAYYRD 73 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH-------HHHhhHHHccC
Confidence 48999999999999999999877654433333322 22222344444 4688999999422 22223456789
Q ss_pred CCEEEEEEeCCCCchhHHHHHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
+|++++|+|++++ ..++.+..++
T Consensus 74 ad~~i~v~D~~~~-~s~~~~~~~~ 96 (191)
T cd04112 74 AHALLLLYDITNK-ASFDNIRAWL 96 (191)
T ss_pred CCEEEEEEECCCH-HHHHHHHHHH
Confidence 9999999999986 3333333333
No 85
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.70 E-value=5.3e-16 Score=105.50 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=59.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC---CeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK---GANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+||+++|.+|||||||++++.+........+....+.....+.++ ...+.+|||||... +...+..++++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~ 73 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-------FGGMTRVYYRG 73 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-------hhhhHHHHhCC
Confidence 589999999999999999999765422222221122223344444 34678999999522 12234457799
Q ss_pred CCEEEEEEeCCCCchhHHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLLE 99 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~ 99 (119)
+|++++|+|++++ +.++.+.
T Consensus 74 a~~~ilv~D~t~~-~s~~~~~ 93 (201)
T cd04107 74 AVGAIIVFDVTRP-STFEAVL 93 (201)
T ss_pred CCEEEEEEECCCH-HHHHHHH
Confidence 9999999999987 3344333
No 86
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.70 E-value=8.2e-16 Score=102.05 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=59.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.+|+++|++|||||||++++.+.... .+ .+|.......+.+++..+.+|||||... +...+..+++.+|+
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~~--~~-~~t~g~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~~d~ 84 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDID--TI-SPTLGFQIKTLEYEGYKLNIWDVGGQKT-------LRPYWRNYFESTDA 84 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC--Cc-CCccccceEEEEECCEEEEEEECCCCHH-------HHHHHHHHhCCCCE
Confidence 58999999999999999999976432 11 2233334445666788899999999532 22334557889999
Q ss_pred EEEEEeCCCC
Q psy6249 82 VLMMLDATKQ 91 (119)
Q Consensus 82 il~Vvd~~~~ 91 (119)
+++|+|++++
T Consensus 85 ~i~v~d~~~~ 94 (173)
T cd04154 85 LIWVVDSSDR 94 (173)
T ss_pred EEEEEECCCH
Confidence 9999999986
No 87
>KOG0070|consensus
Probab=99.70 E-value=4.9e-17 Score=107.96 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=79.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
+++|+++|+.||||||+++.|.-.+.-.. .+|+..+...+.+.+.++++||..|..+-+ ..+..|+++.+
T Consensus 17 e~~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R-------~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEYKNISFTVWDVGGQEKLR-------PLWKHYFQNTQ 86 (181)
T ss_pred eEEEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEEcceEEEEEecCCCcccc-------cchhhhccCCc
Confidence 46899999999999999999986554222 567888888999999999999999964433 33456889999
Q ss_pred EEEEEEeCCCCchhHHHHHHHHHHcC-CcccCCCCce
Q psy6249 81 LVLMMLDATKQDVQRGLLEKELESVG-IRLNKKKPNI 116 (119)
Q Consensus 81 ~il~Vvd~~~~~~~~~~~~~~l~~~~-~~~~~~~~~v 116 (119)
++|||+|++|+ +.+.+.+++|...- .+-.+..|.+
T Consensus 87 ~lIfVvDS~Dr-~Ri~eak~eL~~~l~~~~l~~~~ll 122 (181)
T KOG0070|consen 87 GLIFVVDSSDR-ERIEEAKEELHRMLAEPELRNAPLL 122 (181)
T ss_pred EEEEEEeCCcH-HHHHHHHHHHHHHHcCcccCCceEE
Confidence 99999999997 55566777775543 3333444433
No 88
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.70 E-value=9.4e-16 Score=100.28 Aligned_cols=94 Identities=12% Similarity=0.096 Sum_probs=60.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+.||+++|++|||||||+|++.+.+......+..........+.+++ ..+.+||+||... .......+++.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 73 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER-------YRSLAPMYYRG 73 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH-------HHHHHHHHhcc
Confidence 47999999999999999999998765332221111111222334443 5678999999422 12223346789
Q ss_pred CCEEEEEEeCCCCchhHHHHHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
+|++++|+|++++ +.++....++
T Consensus 74 ~~~~i~v~d~~~~-~s~~~~~~~~ 96 (163)
T cd01860 74 AAAAIVVYDITSE-ESFEKAKSWV 96 (163)
T ss_pred CCEEEEEEECcCH-HHHHHHHHHH
Confidence 9999999999986 3344444433
No 89
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.70 E-value=7.1e-16 Score=100.85 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=58.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLV 82 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 82 (119)
||+++|.+|||||||+++|+..... .. .+|.......+.+.+..+.+|||||... ....+..+++.+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~i 70 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TT--IPTIGFNVETVTYKNLKFQVWDLGGQTS-------IRPYWRCYYSNTDAI 70 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-Cc--CCccCcCeEEEEECCEEEEEEECCCCHH-------HHHHHHHHhcCCCEE
Confidence 6899999999999999999765432 11 2344444445666778899999999643 223345577899999
Q ss_pred EEEEeCCCC
Q psy6249 83 LMMLDATKQ 91 (119)
Q Consensus 83 l~Vvd~~~~ 91 (119)
++|+|++++
T Consensus 71 i~v~d~~~~ 79 (158)
T cd04151 71 IYVVDSTDR 79 (158)
T ss_pred EEEEECCCH
Confidence 999999986
No 90
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.70 E-value=6.9e-16 Score=101.26 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC---CeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK---GANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+.|+++|.+|||||||+|+|++........+++|.......+... +..+.+|||||... +...+...+..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-------~~~~~~~~~~~ 73 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-------FTNMRARGASL 73 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-------HHHHHHHHHhh
Confidence 579999999999999999999776544444555655544555553 67899999999532 12223345688
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|+++.
T Consensus 74 ~d~il~v~d~~~~ 86 (168)
T cd01887 74 TDIAILVVAADDG 86 (168)
T ss_pred cCEEEEEEECCCC
Confidence 9999999999875
No 91
>KOG1191|consensus
Probab=99.70 E-value=1.9e-16 Score=118.20 Aligned_cols=87 Identities=23% Similarity=0.351 Sum_probs=72.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc-chHH-HHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG-KGRG-RQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~-~~~~-~~~~~~~~~ 78 (119)
++|+++|+||||||||+|+|++... .+++.+++|++.....+.++|..+.+.||+|+-+...+. +.++ ++....+++
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~ 348 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIER 348 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhh
Confidence 6899999999999999999998776 788999999999999999999999999999997733222 1111 223446789
Q ss_pred CCEEEEEEeC
Q psy6249 79 ADLVLMMLDA 88 (119)
Q Consensus 79 ~d~il~Vvd~ 88 (119)
+|++++|+|+
T Consensus 349 advi~~vvda 358 (531)
T KOG1191|consen 349 ADVILLVVDA 358 (531)
T ss_pred cCEEEEEecc
Confidence 9999999999
No 92
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.70 E-value=8.8e-16 Score=100.12 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=59.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLV 82 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 82 (119)
||+++|.+|||||||++++++.... . ..+|.......+.+.+..+.+||+||.... ...+...++.+|++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~~ 70 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--T-TIPTIGFNVETVEYKNVSFTVWDVGGQDKI-------RPLWKHYYENTNGI 70 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--C-CCCCcCcceEEEEECCEEEEEEECCCChhh-------HHHHHHHhccCCEE
Confidence 6899999999999999999977631 1 223444445556677889999999995432 22344567899999
Q ss_pred EEEEeCCCC
Q psy6249 83 LMMLDATKQ 91 (119)
Q Consensus 83 l~Vvd~~~~ 91 (119)
++|+|++++
T Consensus 71 i~v~D~~~~ 79 (158)
T cd00878 71 IFVVDSSDR 79 (158)
T ss_pred EEEEECCCH
Confidence 999999986
No 93
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.70 E-value=6.1e-16 Score=102.22 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=62.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLV 82 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 82 (119)
+|+++|.+|||||||++++.+..... .+ .+|.......+...+..+.+||+||.... ...+..+++++|++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~-~~-~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~ad~i 71 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLE-SV-VPTTGFNSVAIPTQDAIMELLEIGGSQNL-------RKYWKRYLSGSQGL 71 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcc-cc-cccCCcceEEEeeCCeEEEEEECCCCcch-------hHHHHHHHhhCCEE
Confidence 58999999999999999999765321 11 12222333345556788999999995332 23344678999999
Q ss_pred EEEEeCCCCchhHHHHHHHHHH
Q psy6249 83 LMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 83 l~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
++|+|++++. .+..+..++..
T Consensus 72 i~V~D~t~~~-s~~~~~~~l~~ 92 (164)
T cd04162 72 IFVVDSADSE-RLPLARQELHQ 92 (164)
T ss_pred EEEEECCCHH-HHHHHHHHHHH
Confidence 9999999863 34444444433
No 94
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=7.5e-16 Score=115.56 Aligned_cols=90 Identities=22% Similarity=0.295 Sum_probs=72.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHH----HHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRG----RQVIAVA 76 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~----~~~~~~~ 76 (119)
++|+++|.+|||||||+|+|++... .+++.+++|.......+.+++..+.+|||||+........... ...++++
T Consensus 174 ~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~ 253 (435)
T PRK00093 174 IKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAI 253 (435)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 5899999999999999999998764 5677888998888777888889999999999865543332211 2345678
Q ss_pred cCCCEEEEEEeCCCC
Q psy6249 77 RTADLVLMMLDATKQ 91 (119)
Q Consensus 77 ~~~d~il~Vvd~~~~ 91 (119)
+.+|++++|+|++++
T Consensus 254 ~~ad~~ilViD~~~~ 268 (435)
T PRK00093 254 ERADVVLLVIDATEG 268 (435)
T ss_pred HHCCEEEEEEeCCCC
Confidence 899999999999986
No 95
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.69 E-value=1.1e-15 Score=100.59 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=62.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeee--eeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTC--IPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
++|+++|.+|||||||++++.+...... ..+|... ....+..++ ..+.+||+||.... ......+++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-------~~~~~~~~~ 71 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS--HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY-------QTITKQYYR 71 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhH-------HhhHHHHhc
Confidence 4899999999999999999986654322 2233332 233455555 46789999994321 222344678
Q ss_pred CCCEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 78 TADLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
++|++++|+|.+++ +.++.+..+++.
T Consensus 72 ~~~~~i~v~d~~~~-~sf~~~~~~~~~ 97 (161)
T cd04117 72 RAQGIFLVYDISSE-RSYQHIMKWVSD 97 (161)
T ss_pred CCcEEEEEEECCCH-HHHHHHHHHHHH
Confidence 99999999999986 444555554443
No 96
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=1.1e-15 Score=102.68 Aligned_cols=95 Identities=16% Similarity=0.088 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||++++.+........+..........+..++ ..+.+|||||... ....+...++++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~-------~~~~~~~~~~~~ 73 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER-------FRSLNNSYYRGA 73 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH-------HHhhHHHHccCC
Confidence 4899999999999999999997654322222222222233344444 4578999999422 222344577899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
|++++|+|++++ ..++.+.+++..
T Consensus 74 d~iilv~d~~~~-~s~~~i~~~~~~ 97 (188)
T cd04125 74 HGYLLVYDVTDQ-ESFENLKFWINE 97 (188)
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHH
Confidence 999999999986 445555544433
No 97
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.69 E-value=1.3e-15 Score=99.03 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=56.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
+||+++|++|||||||+|++.+........+..+.......+...+ ..+.+||+||.... .......++.+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~ 73 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY-------HALGPIYYRDA 73 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHH-------HHhhHHHhccC
Confidence 4899999999999999999997665332222222222333344433 46889999994321 12223356889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 74 ~~~i~v~d~~~~ 85 (162)
T cd04123 74 DGAILVYDITDA 85 (162)
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 98
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.69 E-value=1e-15 Score=102.85 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=64.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.+|+++|.+|||||||++++...... .+ .+|...+...+...+..+.+|||||... ....+..+++++|+
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~--~~-~~T~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ad~ 87 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVV--TT-IPTIGFNVETVEYKNLKFTMWDVGGQDK-------LRPLWRHYYQNTNG 87 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-CCccccceEEEEECCEEEEEEECCCCHh-------HHHHHHHHhcCCCE
Confidence 58999999999999999999754332 11 2344444455666788999999999532 23344557899999
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKELE 103 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l~ 103 (119)
+|+|+|++++ ..++...+++.
T Consensus 88 iI~v~D~t~~-~s~~~~~~~l~ 108 (182)
T PTZ00133 88 LIFVVDSNDR-ERIGDAREELE 108 (182)
T ss_pred EEEEEeCCCH-HHHHHHHHHHH
Confidence 9999999986 33444444443
No 99
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=3.7e-16 Score=115.99 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=75.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccc---h-HHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK---G-RGRQVIAVA 76 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~---~-~~~~~~~~~ 76 (119)
.+|+++|.||+|||||+|+|++... .+++.+++|+++....+++++..+.++||.|+-....-.. . .....+..+
T Consensus 179 ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI 258 (444)
T COG1160 179 IKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAI 258 (444)
T ss_pred eEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHH
Confidence 5899999999999999999998876 7788999999999999999999999999999854422211 1 123356688
Q ss_pred cCCCEEEEEEeCCCC
Q psy6249 77 RTADLVLMMLDATKQ 91 (119)
Q Consensus 77 ~~~d~il~Vvd~~~~ 91 (119)
..+|.+++|+|++.+
T Consensus 259 ~~a~vvllviDa~~~ 273 (444)
T COG1160 259 ERADVVLLVIDATEG 273 (444)
T ss_pred hhcCEEEEEEECCCC
Confidence 999999999999986
No 100
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.69 E-value=1.5e-15 Score=100.55 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=61.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHH-HHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQ-VIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~-~~~~~~~ 78 (119)
.+|+++|++|||||||++++..........+..........+.+++ ..+.+|||||..+. ... ...++++
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~ 75 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERF-------RKSMVQHYYRN 75 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHH-------HHhhHHHhhcC
Confidence 6899999999999999999986554322222222223334455555 57889999995321 111 3346789
Q ss_pred CCEEEEEEeCCCCchhHHHHHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
+|++++|+|++++ +.++.+..++
T Consensus 76 ~d~~i~v~d~~~~-~s~~~~~~~~ 98 (170)
T cd04115 76 VHAVVFVYDVTNM-ASFHSLPSWI 98 (170)
T ss_pred CCEEEEEEECCCH-HHHHhHHHHH
Confidence 9999999999986 3334444333
No 101
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=1.4e-15 Score=100.05 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=58.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.+|+++|.+|||||||++++++........+..+.......+.+.+ ..+.+||+||... +......+++.+
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~ 80 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER-------FRSITQSYYRSA 80 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhcCC
Confidence 5899999999999999999986554322222222334444555665 4578899999532 223344577899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|+++.
T Consensus 81 d~~i~v~d~~~~ 92 (169)
T cd04114 81 NALILTYDITCE 92 (169)
T ss_pred CEEEEEEECcCH
Confidence 999999999875
No 102
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.69 E-value=1.4e-15 Score=99.30 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=56.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.+|+++|.+|||||||+|++++........+..+.+.....+.+++ ..+.+|||||.... .......++.+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~ 73 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-------RTLTSSYYRGA 73 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhh-------hhhhHHHhCCC
Confidence 4899999999999999999997665332222222222223334443 56899999995321 12233466899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 74 d~~i~v~d~~~~ 85 (161)
T cd01863 74 QGVILVYDVTRR 85 (161)
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 103
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.69 E-value=1.3e-15 Score=99.62 Aligned_cols=82 Identities=21% Similarity=0.196 Sum_probs=57.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||++++.+... ...+..++.......+.+++ ..+.+|||||..+. ......+++.+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~ 74 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF-------SAMREQYMRTG 74 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECCEEEEEEEEECCCCcch-------hHHHHHHHhhC
Confidence 6899999999999999999986553 23333333222233344554 46789999995432 22233567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 75 ~~~ilv~d~~~~ 86 (164)
T cd04145 75 EGFLLVFSVTDR 86 (164)
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 104
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.69 E-value=1.6e-15 Score=98.61 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=56.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+++|+++|.+|||||||+|++.+.... ..+..++.......+..++ ..+.+|||||..+ +...+..+++.
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~l~~~~~~~ 72 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE-------YSAMRDQYMRT 72 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEEECCEEEEEEEEECCCCcc-------hHHHHHHHHhc
Confidence 468999999999999999999976542 2222222222223344444 3477899999532 22233457788
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|.++.
T Consensus 73 ~~~~i~v~~~~~~ 85 (162)
T cd04138 73 GEGFLCVFAINSR 85 (162)
T ss_pred CCEEEEEEECCCH
Confidence 9999999999985
No 105
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.69 E-value=1.5e-15 Score=98.01 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=58.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLV 82 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 82 (119)
.|+++|++|||||||+|+|++........ +|.......+..++..+.+||+||... +...+..+++.+|++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~i 71 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTI--PTVGFNMRKVTKGNVTLKVWDLGGQPR-------FRSMWERYCRGVNAI 71 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCcc--CCCCcceEEEEECCEEEEEEECCCCHh-------HHHHHHHHHhcCCEE
Confidence 48999999999999999999876533222 233344444556678899999999532 223345577899999
Q ss_pred EEEEeCCCC
Q psy6249 83 LMMLDATKQ 91 (119)
Q Consensus 83 l~Vvd~~~~ 91 (119)
++|+|+++.
T Consensus 72 i~v~d~~~~ 80 (159)
T cd04159 72 VYVVDAADR 80 (159)
T ss_pred EEEEECCCH
Confidence 999999985
No 106
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.68 E-value=1.1e-15 Score=99.86 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=57.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+++|+++|.+|||||||++++...... ..+..++.......+..++ ..+.+|||||..... .....++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 72 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT-------AMRDLYIKN 72 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECCEEEEEEEEECCCccccc-------hHHHHHhhc
Confidence 469999999999999999999865532 2222333223333444555 456789999954321 122346789
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|.+++
T Consensus 73 ~~~~ilv~d~~~~ 85 (163)
T cd04136 73 GQGFVLVYSITSQ 85 (163)
T ss_pred CCEEEEEEECCCH
Confidence 9999999999986
No 107
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.68 E-value=1.2e-15 Score=114.22 Aligned_cols=90 Identities=24% Similarity=0.282 Sum_probs=72.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHH----HHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRG----RQVIAVA 76 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~----~~~~~~~ 76 (119)
++|+++|.+|+|||||+|+|++... .+++.+++|..+....+.+++..+.+|||||+.+......... ...++++
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~ 252 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAI 252 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHH
Confidence 5899999999999999999998764 4677888998888888888888999999999866543322111 2345578
Q ss_pred cCCCEEEEEEeCCCC
Q psy6249 77 RTADLVLMMLDATKQ 91 (119)
Q Consensus 77 ~~~d~il~Vvd~~~~ 91 (119)
+.+|++++|+|++++
T Consensus 253 ~~ad~~ilV~D~~~~ 267 (429)
T TIGR03594 253 ERADVVLLVLDATEG 267 (429)
T ss_pred HhCCEEEEEEECCCC
Confidence 999999999999986
No 108
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.68 E-value=9e-16 Score=102.65 Aligned_cols=88 Identities=14% Similarity=0.097 Sum_probs=59.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCC--cccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccc------hHHHHH
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQ--SEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK------GRGRQV 72 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~------~~~~~~ 72 (119)
+++|+++|.+|+|||||+|+|++.. ..++..+++|..+..... + ..+.+|||||+........ .....+
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 4689999999999999999999864 245556667765544333 3 3789999999754322111 111223
Q ss_pred HHHhcCCCEEEEEEeCCCC
Q psy6249 73 IAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 73 ~~~~~~~d~il~Vvd~~~~ 91 (119)
++....+|++++|+|++.+
T Consensus 95 l~~~~~~~~ii~vvd~~~~ 113 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHP 113 (179)
T ss_pred HHhChhhcEEEEEecCCCC
Confidence 3333457899999999875
No 109
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=1.1e-15 Score=115.92 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=70.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc--chHHHH--HHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG--KGRGRQ--VIAVA 76 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~--~~~~~~--~~~~~ 76 (119)
++|+++|.||||||||+|+|++... .+++.+++|.++....+.+++..+.+|||||+.+..... .+.... ...++
T Consensus 212 ~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i 291 (472)
T PRK03003 212 RRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAI 291 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHH
Confidence 5899999999999999999998764 567788999888888888899999999999985432221 111111 23357
Q ss_pred cCCCEEEEEEeCCCC
Q psy6249 77 RTADLVLMMLDATKQ 91 (119)
Q Consensus 77 ~~~d~il~Vvd~~~~ 91 (119)
+.+|++++|+|+++.
T Consensus 292 ~~ad~vilV~Da~~~ 306 (472)
T PRK03003 292 EAAEVAVVLIDASEP 306 (472)
T ss_pred hcCCEEEEEEeCCCC
Confidence 899999999999986
No 110
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.68 E-value=3.8e-15 Score=98.09 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=56.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++.+........+..........+.+.+ ..+.+||+||... .......+++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~ 73 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER-------FQSLGVAFYRGA 73 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHhHHHHHhcCC
Confidence 4899999999999999999997654322222222223333444554 4567999999532 122344577999
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 74 d~~i~v~d~~~~ 85 (172)
T cd01862 74 DCCVLVYDVTNP 85 (172)
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 111
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=1.4e-15 Score=104.43 Aligned_cols=96 Identities=23% Similarity=0.210 Sum_probs=62.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC-C--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK-G--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
.+||+++|.+|||||||+|++++.+......+....+.....+.+. + ..+.+|||||... +......+++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~ 74 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-------FRSITRSYYR 74 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-------HHHHHHHHhc
Confidence 3699999999999999999999766432222222222222333332 2 4688999999532 1222345779
Q ss_pred CCCEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 78 TADLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
++|++++|+|++++ ..++.+.+++..
T Consensus 75 ~~d~iilv~D~~~~-~Sf~~l~~~~~~ 100 (211)
T cd04111 75 NSVGVLLVFDITNR-ESFEHVHDWLEE 100 (211)
T ss_pred CCcEEEEEEECCCH-HHHHHHHHHHHH
Confidence 99999999999986 444445444443
No 112
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.68 E-value=1.9e-15 Score=99.31 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=54.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeee--eeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCI--PGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
++|+++|.+|||||||++++.+........ .|.... ......++ ..+.+|||||... +......+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~ 71 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQL--STYALTLYKHNAKFEGKTILVDFWDTAGQER-------FQTMHASYYH 71 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcC--CceeeEEEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHHHhC
Confidence 489999999999999999998665422211 121221 11233333 4678999999532 1223345789
Q ss_pred CCCEEEEEEeCCCC
Q psy6249 78 TADLVLMMLDATKQ 91 (119)
Q Consensus 78 ~~d~il~Vvd~~~~ 91 (119)
.+|++++|+|++++
T Consensus 72 ~~d~~i~v~d~~~~ 85 (161)
T cd04124 72 KAHACILVFDVTRK 85 (161)
T ss_pred CCCEEEEEEECCCH
Confidence 99999999999986
No 113
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.68 E-value=1.6e-15 Score=103.10 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=61.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|++|||||||++++.+........+..........+...+ ..+.+|||||... +......+++++
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~a 79 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER-------FRTITSTYYRGT 79 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchh-------HHHHHHHHhCCC
Confidence 5899999999999999999987654222112111122223344444 4678999999422 222344577899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELE 103 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~ 103 (119)
|++++|+|++++ +.++.+..++.
T Consensus 80 ~~iilv~D~~~~-~s~~~~~~~~~ 102 (199)
T cd04110 80 HGVIVVYDVTNG-ESFVNVKRWLQ 102 (199)
T ss_pred cEEEEEEECCCH-HHHHHHHHHHH
Confidence 999999999987 34444444443
No 114
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.68 E-value=1.4e-15 Score=102.55 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=55.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
+|+++|.+|||||||++++....... .+..++.......+.+++. .+++|||||..+ +......+++.+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE-TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE-------YTALRDQWIREGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc-cCCCchHhhEEEEEEECCEEEEEEEEECCCchh-------hHHHHHHHHHhCC
Confidence 58999999999999999998655422 2222222222233444554 478999999532 1222334778999
Q ss_pred EEEEEEeCCCC
Q psy6249 81 LVLMMLDATKQ 91 (119)
Q Consensus 81 ~il~Vvd~~~~ 91 (119)
++++|+|.++.
T Consensus 73 ~~ilv~d~~~~ 83 (190)
T cd04144 73 GFILVYSITSR 83 (190)
T ss_pred EEEEEEECCCH
Confidence 99999999886
No 115
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.68 E-value=2e-15 Score=99.05 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=60.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+.+|+++|.+|||||||++++..... ...++.++.......+..++ ..+.+|||||.... ......++++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~ 72 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF-------TAMRDLYMKN 72 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEEEEEEEEECCCcccc-------hhHHHHHHhh
Confidence 57999999999999999999985443 22333333333333455554 35679999995332 2223346789
Q ss_pred CCEEEEEEeCCCCchhHHHHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLLEKE 101 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~~~ 101 (119)
+|++++|+|.+++ ..++.+.++
T Consensus 73 ~d~~ilv~d~~~~-~s~~~~~~~ 94 (164)
T cd04175 73 GQGFVLVYSITAQ-STFNDLQDL 94 (164)
T ss_pred CCEEEEEEECCCH-HHHHHHHHH
Confidence 9999999999876 333433333
No 116
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.68 E-value=6.9e-16 Score=106.14 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=75.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc-cC-CCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHH----H
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE-AA-SYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIA----V 75 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~----~ 75 (119)
++|+++|.+||||||++|.|++.... .. ...+.|..+......+++..+.++||||+.+..........+..+ .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 47999999999999999999988762 22 234566677777778899999999999997765443333333332 2
Q ss_pred hcCCCEEEEEEeCCCC-chhHHHHHHHHHHcCCcccCC
Q psy6249 76 ARTADLVLMMLDATKQ-DVQRGLLEKELESVGIRLNKK 112 (119)
Q Consensus 76 ~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~~~~~~~~ 112 (119)
..+.|++++|++.... ..+...++...+.|+..++++
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~ 118 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKH 118 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGG
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhH
Confidence 3578999999999843 345566666667888887765
No 117
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.67 E-value=2.2e-15 Score=101.17 Aligned_cols=82 Identities=15% Similarity=0.190 Sum_probs=55.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE---CCeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY---KGANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
.+|+++|.+|||||||++++...... ...+..........+.. .+..+.+|||||... +...+..++++
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~ 75 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK-------LRPLWKSYTRC 75 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCceEEEEEECCCcHh-------HHHHHHHHhcc
Confidence 58999999999999999999865532 22222111122222222 356899999999522 22234456789
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|++++
T Consensus 76 ~d~ii~v~D~~~~ 88 (183)
T cd04152 76 TDGIVFVVDSVDV 88 (183)
T ss_pred CCEEEEEEECCCH
Confidence 9999999999986
No 118
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.67 E-value=1.4e-15 Score=109.34 Aligned_cols=112 Identities=15% Similarity=0.217 Sum_probs=74.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHh--c
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVA--R 77 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~--~ 77 (119)
+++|+++|.+|+||||++|+|++.+. .++.+.+++..+.......++..+.+|||||+.+.............+++ .
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~ 117 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGK 117 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcC
Confidence 36899999999999999999998875 44555555555555555668999999999998765321111111111111 3
Q ss_pred CCCEEEEEEeCCC--C-chhHHHHHHHHHHcCCcccCC
Q psy6249 78 TADLVLMMLDATK--Q-DVQRGLLEKELESVGIRLNKK 112 (119)
Q Consensus 78 ~~d~il~Vvd~~~--~-~~~~~~~~~~l~~~~~~~~~~ 112 (119)
..|+++||.+... . ..+...++...+.|+..++++
T Consensus 118 g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~ 155 (313)
T TIGR00991 118 TIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRK 155 (313)
T ss_pred CCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhcc
Confidence 6999999965432 2 234455555557778777764
No 119
>PLN03110 Rab GTPase; Provisional
Probab=99.67 E-value=2.9e-15 Score=103.21 Aligned_cols=95 Identities=19% Similarity=0.157 Sum_probs=64.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||++++.+........+....+.....+.+++ ..+.+|||||... +...+..+++.+
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~ 85 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYYRGA 85 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhCCC
Confidence 5899999999999999999997665333333222333344555555 4788999999432 223344577999
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
|++++|+|++++ ..++.+..++..
T Consensus 86 ~~~ilv~d~~~~-~s~~~~~~~~~~ 109 (216)
T PLN03110 86 VGALLVYDITKR-QTFDNVQRWLRE 109 (216)
T ss_pred CEEEEEEECCCh-HHHHHHHHHHHH
Confidence 999999999986 344444444433
No 120
>KOG0075|consensus
Probab=99.67 E-value=1.6e-16 Score=102.42 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=80.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
++.+.++|..+||||||+|.+..... .++-.+|+..+...+.-+...+.+||.||...++ ..+.++++.++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~--~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfr-------smWerycR~v~ 90 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQY--LEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR-------SMWERYCRGVS 90 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccc--hhhhcccccceeEEeccCceEEEEEecCCCccHH-------HHHHHHhhcCc
Confidence 46889999999999999999975442 3344567777777777778899999999965432 34567889999
Q ss_pred EEEEEEeCCCCchhHHHHHHHHHH-cCCcccCCCCceee
Q psy6249 81 LVLMMLDATKQDVQRGLLEKELES-VGIRLNKKKPNIYF 118 (119)
Q Consensus 81 ~il~Vvd~~~~~~~~~~~~~~l~~-~~~~~~~~~~~v~~ 118 (119)
+++|++||+++ +.+..-++||.. ...+-+...|.+++
T Consensus 91 aivY~VDaad~-~k~~~sr~EL~~LL~k~~l~gip~LVL 128 (186)
T KOG0075|consen 91 AIVYVVDAADP-DKLEASRSELHDLLDKPSLTGIPLLVL 128 (186)
T ss_pred EEEEEeecCCc-ccchhhHHHHHHHhcchhhcCCcEEEe
Confidence 99999999996 666666777643 45555555555544
No 121
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.67 E-value=3.6e-15 Score=101.02 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=67.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.||+++|.+|||||||++++..........+..+.+.....+.+++ ..+.+|||+|... +...+..+++.+
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~-------~~~l~~~~~~~a 79 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR-------FCTIFRSYSRGA 79 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHhcCC
Confidence 5899999999999999999987543211112222222333345555 5678999999532 222344577999
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHHHcCCcccCCCCceee
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELESVGIRLNKKKPNIYF 118 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 118 (119)
|++++|+|.+++ ..++.+..+++..... ..+.|.|++
T Consensus 80 d~illVfD~t~~-~Sf~~~~~w~~~i~~~-~~~~piilV 116 (189)
T cd04121 80 QGIILVYDITNR-WSFDGIDRWIKEIDEH-APGVPKILV 116 (189)
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHh-CCCCCEEEE
Confidence 999999999997 4444444444443222 134555554
No 122
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.5e-16 Score=111.74 Aligned_cols=90 Identities=20% Similarity=0.287 Sum_probs=74.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
+.|.++|..|+||||++|+|+.... +++..+.++...+.-+..+++..+.+|||||+.++...+.+.+..+..++...|
T Consensus 40 vnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~D 119 (296)
T COG3596 40 VNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLD 119 (296)
T ss_pred eeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHhhhcc
Confidence 4678999999999999999996554 455455555555555667788999999999999987777777888889999999
Q ss_pred EEEEEEeCCCC
Q psy6249 81 LVLMMLDATKQ 91 (119)
Q Consensus 81 ~il~Vvd~~~~ 91 (119)
++++++|+.|+
T Consensus 120 LvL~l~~~~dr 130 (296)
T COG3596 120 LVLWLIKADDR 130 (296)
T ss_pred EEEEeccCCCc
Confidence 99999999987
No 123
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.66 E-value=4.5e-15 Score=98.62 Aligned_cols=92 Identities=14% Similarity=0.070 Sum_probs=60.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
||+++|.+|||||||++++.+........+..........+.+++ ..+.+|||||... +......+++.+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ad 74 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQER-------FKCIASTYYRGAQ 74 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH-------HHhhHHHHhcCCC
Confidence 799999999999999999997654322222111222223344444 4688999999532 1223345679999
Q ss_pred EEEEEEeCCCCchhHHHHHHHH
Q psy6249 81 LVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 81 ~il~Vvd~~~~~~~~~~~~~~l 102 (119)
++++|+|++++ ..++.+.+++
T Consensus 75 ~~ilv~d~~~~-~s~~~~~~~~ 95 (170)
T cd04108 75 AIIIVFDLTDV-ASLEHTRQWL 95 (170)
T ss_pred EEEEEEECcCH-HHHHHHHHHH
Confidence 99999999985 3333344433
No 124
>PLN03108 Rab family protein; Provisional
Probab=99.66 E-value=3.7e-15 Score=102.19 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=58.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++++........+..........+.+++ ..+.+|||||... +......+++.+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~-------~~~~~~~~~~~a 79 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-------FRSITRSYYRGA 79 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHhccC
Confidence 5899999999999999999997654332222222223334455554 3578999999432 223344577899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 80 d~~vlv~D~~~~ 91 (210)
T PLN03108 80 AGALLVYDITRR 91 (210)
T ss_pred CEEEEEEECCcH
Confidence 999999999986
No 125
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.66 E-value=4.4e-15 Score=96.89 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=55.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC-CeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK-GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
+|+++|.+|||||||+|++.+.... .. .+|.......+... ...+.+|||||... +...+..+++.+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~--~~t~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~~~~~~ 70 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TT--IPTVGFNVEMLQLEKHLSLTVWDVGGQEK-------MRTVWKCYLENTDG 70 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cc--cCccCcceEEEEeCCceEEEEEECCCCHh-------HHHHHHHHhccCCE
Confidence 5899999999999999999976542 11 12222223333333 46899999999532 22334457789999
Q ss_pred EEEEEeCCCC
Q psy6249 82 VLMMLDATKQ 91 (119)
Q Consensus 82 il~Vvd~~~~ 91 (119)
+++|+|++++
T Consensus 71 iv~v~D~~~~ 80 (160)
T cd04156 71 LVYVVDSSDE 80 (160)
T ss_pred EEEEEECCcH
Confidence 9999999986
No 126
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.65 E-value=2.9e-15 Score=118.42 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=71.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccc--hHHH--HHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK--GRGR--QVIAVA 76 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~--~~~~--~~~~~~ 76 (119)
++|+++|.||||||||+|+|++.+. .+++++++|.++....+.+++..+.+|||||+.+...... +... ....++
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i 530 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAI 530 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHh
Confidence 5899999999999999999998875 4677889999888888888999999999999865432221 1111 123457
Q ss_pred cCCCEEEEEEeCCCC
Q psy6249 77 RTADLVLMMLDATKQ 91 (119)
Q Consensus 77 ~~~d~il~Vvd~~~~ 91 (119)
+.+|++++|+|+++.
T Consensus 531 ~~advvilViDat~~ 545 (712)
T PRK09518 531 ERSELALFLFDASQP 545 (712)
T ss_pred hcCCEEEEEEECCCC
Confidence 899999999999986
No 127
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.65 E-value=3.7e-15 Score=96.73 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=58.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
||+++|++|||||||++++++... ...+..++.......+..++ ..+.+||+||... ........++.+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE-------FSAMRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHHhcCC
Confidence 689999999999999999997652 33444444444444555553 5688999999533 1223345678899
Q ss_pred EEEEEEeCCCC
Q psy6249 81 LVLMMLDATKQ 91 (119)
Q Consensus 81 ~il~Vvd~~~~ 91 (119)
++++|+|.+++
T Consensus 73 ~~i~v~d~~~~ 83 (160)
T cd00876 73 GFILVYSITDR 83 (160)
T ss_pred EEEEEEECCCH
Confidence 99999999986
No 128
>PTZ00369 Ras-like protein; Provisional
Probab=99.65 E-value=5.6e-15 Score=99.58 Aligned_cols=83 Identities=17% Similarity=0.079 Sum_probs=56.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+++|+++|.+|||||||++++.+..... .+..+........+.+++ ..+.+|||||..+. ...+..+++.
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~l~~~~~~~ 76 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFID-EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY-------SAMRDQYMRT 76 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc-CcCCchhhEEEEEEEECCEEEEEEEEeCCCCccc-------hhhHHHHhhc
Confidence 3689999999999999999998765421 121221112223334444 45778999995332 2223457789
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|++++
T Consensus 77 ~d~iilv~D~s~~ 89 (189)
T PTZ00369 77 GQGFLCVYSITSR 89 (189)
T ss_pred CCEEEEEEECCCH
Confidence 9999999999987
No 129
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.65 E-value=7.2e-15 Score=96.24 Aligned_cols=83 Identities=10% Similarity=0.144 Sum_probs=54.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCce-eeeeeeEEEE---CCeeEEEEeCCcccccccccchHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTT-LTCIPGVIEY---KGANIQLLDLPGIIEGAAQGKGRGRQVIAVA 76 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t-~~~~~~~~~~---~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~ 76 (119)
++|+++|.+|||||||++++..... ...++..++ .......+.. ....+.+|||||... .......++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~ 73 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-------YSDMVSNYW 73 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-------HHHHHHHHh
Confidence 4899999999999999999985421 222332222 1111122322 236789999999422 122234567
Q ss_pred cCCCEEEEEEeCCCC
Q psy6249 77 RTADLVLMMLDATKQ 91 (119)
Q Consensus 77 ~~~d~il~Vvd~~~~ 91 (119)
+++|++++|+|++++
T Consensus 74 ~~~d~ii~v~d~~~~ 88 (164)
T cd04101 74 ESPSVFILVYDVSNK 88 (164)
T ss_pred CCCCEEEEEEECcCH
Confidence 899999999999986
No 130
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.64 E-value=1.5e-14 Score=95.42 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=56.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||++++.+........+..........+..++ ..+.+||+||..+ .......+++.+
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~~~~ 78 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER-------FRSLRTPFYRGS 78 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH-------HHHhHHHHhcCC
Confidence 5899999999999999999987665332222222222233344444 4678999999432 122233467899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|.+++
T Consensus 79 d~~i~v~d~~~~ 90 (170)
T cd04116 79 DCCLLTFAVDDS 90 (170)
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 131
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.64 E-value=5.6e-15 Score=96.76 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=56.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+.+|+++|.+|||||||++++....... .+..+........+..++. .+++|||||...... .+..++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 72 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIE-KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS-------MRDLYIKN 72 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCchhheEEEEEEECCEEEEEEEEECCCcccccc-------hHHHHHhh
Confidence 4689999999999999999998665422 2222222222334444543 577899999533211 22336688
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|++++
T Consensus 73 ad~~i~v~d~~~~ 85 (163)
T cd04176 73 GQGFIVVYSLVNQ 85 (163)
T ss_pred CCEEEEEEECCCH
Confidence 9999999999986
No 132
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.64 E-value=3.7e-15 Score=97.61 Aligned_cols=82 Identities=22% Similarity=0.198 Sum_probs=55.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.||+++|.+|||||||+|++.+..... .+..++.......+..++ ..+.+|||||..+. ......+++.+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~-------~~~~~~~~~~~ 72 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF-------SAMRDQYMRTG 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhEEEEEEECCEEEEEEEEECCCcccc-------hHHHHHHHhhC
Confidence 489999999999999999999765422 222222222222333443 46789999995432 12233467889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 73 ~~~i~v~d~~~~ 84 (164)
T smart00173 73 EGFLLVYSITDR 84 (164)
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.64 E-value=9.5e-15 Score=96.54 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=58.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|++|||||||+++|.+..... ..+|...+...+...+..+.+||+||... ....+..+++.+|+
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~~~ 84 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSDGFKLNVWDIGGQRA-------IRPYWRNYFENTDC 84 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHhcCCCE
Confidence 589999999999999999999764321 12233333345667788999999999532 22334456789999
Q ss_pred EEEEEeCCCC
Q psy6249 82 VLMMLDATKQ 91 (119)
Q Consensus 82 il~Vvd~~~~ 91 (119)
+++|+|+++.
T Consensus 85 ii~v~D~~~~ 94 (173)
T cd04155 85 LIYVIDSADK 94 (173)
T ss_pred EEEEEeCCCH
Confidence 9999999975
No 134
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.64 E-value=5.5e-15 Score=102.32 Aligned_cols=87 Identities=16% Similarity=0.092 Sum_probs=60.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||++++...... .+ .+|.........+....+.+|||||.... ......+++.+|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~--~~-~~Tig~~~~~~~~~~~~l~iwDt~G~e~~-------~~l~~~~~~~ad~ 70 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK--DT-VSTVGGAFYLKQWGPYNISIWDTAGREQF-------HGLGSMYCRGAAA 70 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC--CC-CCccceEEEEEEeeEEEEEEEeCCCcccc-------hhhHHHHhccCCE
Confidence 58999999999999999999976643 11 23333333333445678999999995332 1122346789999
Q ss_pred EEEEEeCCCCchhHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLE 99 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~ 99 (119)
+++|+|++++ ..++.+.
T Consensus 71 ~IlV~Dvt~~-~Sf~~l~ 87 (220)
T cd04126 71 VILTYDVSNV-QSLEELE 87 (220)
T ss_pred EEEEEECCCH-HHHHHHH
Confidence 9999999986 3344443
No 135
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.64 E-value=9.6e-15 Score=98.38 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=59.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceee-eeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLT-CIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+||+++|.+|||||||++++.+.......+..+... .....+..++. .+.+|||||.... ......+++.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~~~ 73 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY-------EAMSRIYYRG 73 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhh-------hhhhHhhcCC
Confidence 589999999999999999999766543333322211 11223555554 4669999995321 1112235679
Q ss_pred CCEEEEEEeCCCCchhHHHHHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
+|++++|+|++++ ..++.+..++
T Consensus 74 ~d~iilv~d~~~~-~s~~~~~~~~ 96 (193)
T cd04118 74 AKAAIVCYDLTDS-SSFERAKFWV 96 (193)
T ss_pred CCEEEEEEECCCH-HHHHHHHHHH
Confidence 9999999999986 3333333333
No 136
>KOG0084|consensus
Probab=99.63 E-value=7e-15 Score=98.66 Aligned_cols=107 Identities=15% Similarity=0.189 Sum_probs=75.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceee--eeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLT--CIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
+||.++|.+|||||.|+.++......-+ ...|.+ .....+.++|. .+++|||+|..+ ++..+..+++
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f~e~--~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQER-------Frtit~syYR 80 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTFTES--YISTIGVDFKIRTVELDGKTIKLQIWDTAGQER-------FRTITSSYYR 80 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCcchh--hcceeeeEEEEEEeeecceEEEEEeeeccccHH-------HhhhhHhhcc
Confidence 5899999999999999999986654222 123333 33334555654 688999999532 2345677999
Q ss_pred CCCEEEEEEeCCCCchhHHHHHHHHHHcCCcccCCCCceee
Q psy6249 78 TADLVLMMLDATKQDVQRGLLEKELESVGIRLNKKKPNIYF 118 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 118 (119)
+||+||+|+|.++. +.++.+..++.+.......+-+.+++
T Consensus 81 ~ahGii~vyDiT~~-~SF~~v~~Wi~Ei~~~~~~~v~~lLV 120 (205)
T KOG0084|consen 81 GAHGIIFVYDITKQ-ESFNNVKRWIQEIDRYASENVPKLLV 120 (205)
T ss_pred CCCeEEEEEEcccH-HHhhhHHHHHHHhhhhccCCCCeEEE
Confidence 99999999999996 66677777666666555555555554
No 137
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=1e-14 Score=97.79 Aligned_cols=82 Identities=16% Similarity=0.081 Sum_probs=54.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC---CeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK---GANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
++|+++|.+|||||||++++.+...... +..+........+... ...+.+|||||..+ +......++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~-~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ 72 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE-YVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-------YDRLRPLSYPD 72 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCC-CCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-------HHHHHHHhCCC
Confidence 4899999999999999999997654322 2222211222233333 24688999999432 12223336789
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|++++
T Consensus 73 ad~ii~v~d~~~~ 85 (187)
T cd04132 73 VDVLLICYAVDNP 85 (187)
T ss_pred CCEEEEEEECCCH
Confidence 9999999999986
No 138
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.63 E-value=7.3e-15 Score=114.02 Aligned_cols=91 Identities=23% Similarity=0.319 Sum_probs=70.9
Q ss_pred cCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccc--cchHHHHHHHHhcCCCEEEEE
Q psy6249 8 DLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ--GKGRGRQVIAVARTADLVLMM 85 (119)
Q Consensus 8 G~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~--~~~~~~~~~~~~~~~d~il~V 85 (119)
|+||||||||+|+|++.+..+++++++|.+...+.+.+++.++.+|||||..+.... ++.....+.. .+.+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLL-NEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHh-hcCCCEEEEE
Confidence 899999999999999988888999999999999999999999999999998664322 2222222222 2579999999
Q ss_pred EeCCCCchhHHHHH
Q psy6249 86 LDATKQDVQRGLLE 99 (119)
Q Consensus 86 vd~~~~~~~~~~~~ 99 (119)
+|+++.++.+....
T Consensus 80 vDat~ler~l~l~~ 93 (591)
T TIGR00437 80 VDASNLERNLYLTL 93 (591)
T ss_pred ecCCcchhhHHHHH
Confidence 99998655544333
No 139
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.63 E-value=1.5e-14 Score=97.33 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=60.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceee--eeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLT--CIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
+||+++|.+|||||||++++.+..... .+ .+|.. .....+..++ ..+.+|||+|... +...+..+++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~-~~-~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~-------~~~~~~~~~~ 71 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE-DY-IQTLGVNFMEKTISIRGTEITFSIWDLGGQRE-------FINMLPLVCN 71 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CC-CCccceEEEEEEEEECCEEEEEEEEeCCCchh-------HHHhhHHHCc
Confidence 589999999999999999998665422 22 22332 2223455555 4678999999532 1222334679
Q ss_pred CCCEEEEEEeCCCCchhHHHHHHHH
Q psy6249 78 TADLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
++|++++|+|++++ ..++.+.+++
T Consensus 72 ~a~~iilv~D~t~~-~s~~~i~~~~ 95 (182)
T cd04128 72 DAVAILFMFDLTRK-STLNSIKEWY 95 (182)
T ss_pred CCCEEEEEEECcCH-HHHHHHHHHH
Confidence 99999999999987 3344444333
No 140
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.63 E-value=1.1e-14 Score=97.21 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=56.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.||+++|.+|||||||++++...... .++..+........+..++ ..+.+|||+|..+.. .....+++++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~a 73 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD-------RLRPLSYPQT 73 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEECCCccchh-------hhhhhhcccC
Confidence 58999999999999999999976542 2232222222222345555 567899999964321 1222367899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|.+++
T Consensus 74 ~~~ilv~d~~~~ 85 (175)
T cd01874 74 DVFLVCFSVVSP 85 (175)
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 141
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.63 E-value=9.1e-15 Score=99.26 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=56.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
||+++|.+|||||||++++.+.... ..+..++.......+.+++ ..+.+||+||..... .....++..+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~ad 72 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP-------AMRKLSIQNSD 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhh-------HHHHHHhhcCC
Confidence 6899999999999999999876542 2233333233334455566 568899999954321 12224678999
Q ss_pred EEEEEEeCCCC
Q psy6249 81 LVLMMLDATKQ 91 (119)
Q Consensus 81 ~il~Vvd~~~~ 91 (119)
++++|+|++++
T Consensus 73 ~vilv~d~~~~ 83 (198)
T cd04147 73 AFALVYAVDDP 83 (198)
T ss_pred EEEEEEECCCH
Confidence 99999999986
No 142
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.63 E-value=1.1e-14 Score=93.42 Aligned_cols=88 Identities=26% Similarity=0.291 Sum_probs=67.2
Q ss_pred EEcCCCCCHHHHHHHHhCCCcc-cCCCCCceeeeeeeEEEEC-CeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEE
Q psy6249 6 VLDLKCSHESTLLSTLTHTQSE-AASYEFTTLTCIPGVIEYK-GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVL 83 (119)
Q Consensus 6 iiG~~~~GKStlin~l~~~~~~-~~~~~~~t~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il 83 (119)
++|.+|||||||+|+|++.... .+..+++|........... ...+.+|||||+.+...............++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999987654 5566666766666666555 6789999999987765544333345556778999999
Q ss_pred EEEeCCCCch
Q psy6249 84 MMLDATKQDV 93 (119)
Q Consensus 84 ~Vvd~~~~~~ 93 (119)
+|+|+++...
T Consensus 81 ~v~~~~~~~~ 90 (163)
T cd00880 81 FVVDADLRAD 90 (163)
T ss_pred EEEeCCCCCC
Confidence 9999998743
No 143
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.62 E-value=1.3e-14 Score=95.60 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=54.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE--CCeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY--KGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.+|+++|.+|||||||++++++........ .+........+.. ....+.+|||||..... .....+++.+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~-~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 73 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYI-PTIEDTYRQVISCSKNICTLQITDTTGSHQFP-------AMQRLSISKG 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcC-CcchheEEEEEEECCEEEEEEEEECCCCCcch-------HHHHHHhhcC
Confidence 689999999999999999999765422211 1111111112222 23568899999964321 1222356789
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|.+++
T Consensus 74 ~~~ilv~d~~~~ 85 (165)
T cd04140 74 HAFILVYSVTSK 85 (165)
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 144
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.62 E-value=6.3e-15 Score=96.89 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=58.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
+|+++|.+|||||||++++..... ...++.++.......+.+++. .+.+|||||..... ......+++.+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~~~~d 73 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD------TEQLERSIRWAD 73 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc------cchHHHHHHhCC
Confidence 589999999999999999985443 223333332222333444444 57899999965311 112334678899
Q ss_pred EEEEEEeCCCCchhHHHHH
Q psy6249 81 LVLMMLDATKQDVQRGLLE 99 (119)
Q Consensus 81 ~il~Vvd~~~~~~~~~~~~ 99 (119)
++++|+|++++ ..++.+.
T Consensus 74 ~~i~v~d~~~~-~s~~~~~ 91 (165)
T cd04146 74 GFVLVYSITDR-SSFDEIS 91 (165)
T ss_pred EEEEEEECCCH-HHHHHHH
Confidence 99999999986 3344333
No 145
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.61 E-value=2e-14 Score=94.93 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=56.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+++|+++|.+|||||||++++.+.... ..+..++.......+.+++ ..+.+|||||..+.. .....+++.
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 72 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFI-ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT-------AMRELYIKS 72 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcchheEEEEEEECCEEEEEEEEeCCCcccch-------hhhHHHHhh
Confidence 479999999999999999999866542 2222222222223334443 467899999954322 222345688
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|.+++
T Consensus 73 ~~~~vlv~~~~~~ 85 (168)
T cd04177 73 GQGFLLVYSVTSE 85 (168)
T ss_pred CCEEEEEEECCCH
Confidence 9999999999986
No 146
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.61 E-value=1.8e-14 Score=95.91 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=60.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCC----------------CCCceeeeeeeEEEECCeeEEEEeCCcccccccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAAS----------------YEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK 66 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~ 66 (119)
+|+++|.+|||||||+|+|.+....... ..+.|.......+.+.+..+.+|||||..+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------ 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence 5899999999999999999876543221 123344444555666778899999999643
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 67 GRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 67 ~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+...+..+++.+|++++|+|++++
T Consensus 75 -~~~~~~~~~~~~d~~i~v~d~~~~ 98 (189)
T cd00881 75 -FSSEVIRGLSVSDGAILVVDANEG 98 (189)
T ss_pred -HHHHHHHHHHhcCEEEEEEECCCC
Confidence 233455667899999999999875
No 147
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.61 E-value=2.2e-14 Score=94.87 Aligned_cols=90 Identities=13% Similarity=0.060 Sum_probs=57.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEE--EEC--CeeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVI--EYK--GANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~--~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
.||+++|.+|||||||++++........ ..+|........ ..+ ...+.+|||||...... ....+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~ 71 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG-------LRDGYYI 71 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc-------ccHHHhc
Confidence 4899999999999999999985443211 122332222222 222 35788999999643211 1123568
Q ss_pred CCCEEEEEEeCCCCchhHHHHHHH
Q psy6249 78 TADLVLMMLDATKQDVQRGLLEKE 101 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~~~~~~~~~~ 101 (119)
.+|++++|+|++++ +.++.+...
T Consensus 72 ~~d~~i~v~d~~~~-~s~~~~~~~ 94 (166)
T cd00877 72 GGQCAIIMFDVTSR-VTYKNVPNW 94 (166)
T ss_pred CCCEEEEEEECCCH-HHHHHHHHH
Confidence 89999999999986 333333333
No 148
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.61 E-value=8.6e-15 Score=100.32 Aligned_cols=82 Identities=21% Similarity=0.189 Sum_probs=63.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccC-------------------------------CCCCceeeeeeeEEEECCeeEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAA-------------------------------SYEFTTLTCIPGVIEYKGANIQ 51 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 51 (119)
+|+++|.+|+|||||+++|......+. ..++.|+......+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975432211 1256677777777888889999
Q ss_pred EEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 52 LLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 52 ~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+|||||..+ +.......++.+|++++|+|++++
T Consensus 81 liDTpG~~~-------~~~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 81 IADTPGHEQ-------YTRNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred EEECCcHHH-------HHHHHHHhhhhCCEEEEEEECCCC
Confidence 999999632 223455567899999999999875
No 149
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=2.1e-14 Score=95.23 Aligned_cols=95 Identities=17% Similarity=0.095 Sum_probs=62.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCcee-eeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTL-TCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~-~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
.+|+++|.+|||||||++++.+....+.++.+++. ......+.+++ ..+.+||++|...... ....++++
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~~~~ 77 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL-------LNDAELAA 77 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc-------cchhhhhc
Confidence 58999999999999999999976654233333221 12223345555 4678999999543211 12335689
Q ss_pred CCEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
+|++++|+|++++ ..++.+.+.++.
T Consensus 78 ~d~~llv~d~~~~-~s~~~~~~~~~~ 102 (169)
T cd01892 78 CDVACLVYDSSDP-KSFSYCAEVYKK 102 (169)
T ss_pred CCEEEEEEeCCCH-HHHHHHHHHHHH
Confidence 9999999999987 444554444443
No 150
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.61 E-value=1.6e-14 Score=97.31 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=58.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCC--cccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc---chH---HHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQ--SEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG---KGR---GRQVI 73 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~---~~~---~~~~~ 73 (119)
++|+++|.+|||||||+|+|++.. ...+..+++|....... . +.++.+|||||+....... ..+ ...++
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYL 101 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHH
Confidence 589999999999999999999864 34455566665544322 2 4689999999975432111 111 12233
Q ss_pred HHhcCCCEEEEEEeCCCCc
Q psy6249 74 AVARTADLVLMMLDATKQD 92 (119)
Q Consensus 74 ~~~~~~d~il~Vvd~~~~~ 92 (119)
.....++++++|+|++.+.
T Consensus 102 ~~~~~~~~~~~v~d~~~~~ 120 (196)
T PRK00454 102 RTRENLKGVVLLIDSRHPL 120 (196)
T ss_pred HhCccceEEEEEEecCCCC
Confidence 3334557899999988763
No 151
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.61 E-value=2.1e-14 Score=98.20 Aligned_cols=90 Identities=16% Similarity=0.213 Sum_probs=62.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE----CCeeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY----KGANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
++|+++|++|||||||+++|........ + ++..++...+.. .+..+.+||+||..+ +...+..+++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t-~--~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-------~~~~~~~~~~ 70 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST-V--TSIEPNVATFILNSEGKGKKFRLVDVPGHPK-------LRDKLLETLK 70 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc-c--CcEeecceEEEeecCCCCceEEEEECCCCHH-------HHHHHHHHHh
Confidence 4799999999999999999987653211 1 222344444433 257899999999543 3445566778
Q ss_pred CC-CEEEEEEeCCCCchhHHHHHHH
Q psy6249 78 TA-DLVLMMLDATKQDVQRGLLEKE 101 (119)
Q Consensus 78 ~~-d~il~Vvd~~~~~~~~~~~~~~ 101 (119)
.+ +++|+|+|+++....+....+.
T Consensus 71 ~~~~~vV~VvD~~~~~~~~~~~~~~ 95 (203)
T cd04105 71 NSAKGIVFVVDSATFQKNLKDVAEF 95 (203)
T ss_pred ccCCEEEEEEECccchhHHHHHHHH
Confidence 88 9999999999864444443333
No 152
>PLN03118 Rab family protein; Provisional
Probab=99.60 E-value=2.1e-14 Score=98.35 Aligned_cols=82 Identities=15% Similarity=0.162 Sum_probs=56.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+++|++..... ..+..........+.+++ ..+.+|||||.... ......+++.+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~~~~ 86 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF-------RTLTSSYYRNA 86 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEECCEEEEEEEEECCCchhh-------HHHHHHHHhcC
Confidence 689999999999999999999765421 111112222233344444 46789999995332 22234567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 87 d~~vlv~D~~~~ 98 (211)
T PLN03118 87 QGIILVYDVTRR 98 (211)
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 153
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.60 E-value=1.7e-14 Score=95.13 Aligned_cols=81 Identities=11% Similarity=0.135 Sum_probs=54.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE--CCeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY--KGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.||+++|.+|||||||+|++.+.... ..++.+ .........+ ...++.+|||||.... ...+..+++.+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~a 71 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQD-------RANLAAEIRKA 71 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC-ccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhh-------hHHHhhhcccC
Confidence 38999999999999999999876542 222221 1111111122 3467889999995432 12334456899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 72 d~~ilv~d~~~~ 83 (166)
T cd01893 72 NVICLVYSVDRP 83 (166)
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 154
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.60 E-value=3.1e-14 Score=91.29 Aligned_cols=84 Identities=23% Similarity=0.139 Sum_probs=60.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
.++|+++|.+|||||||+|++.+........++.+.......+.+++ ..+.+||+||..+... ......++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~ 73 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA-------IRRLYYRA 73 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH-------HHHHHHhh
Confidence 36899999999999999999998775555566667666666677777 7789999999433211 12223456
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
++.++.++|....
T Consensus 74 ~~~~i~~~d~~~~ 86 (161)
T TIGR00231 74 VESSLRVFDIVIL 86 (161)
T ss_pred hhEEEEEEEEeee
Confidence 6777777776654
No 155
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.60 E-value=3.5e-14 Score=93.37 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=54.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC--CeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK--GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+++|++........ .+............ ...+.+||+||..+... .....++.+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~-------~~~~~~~~~ 72 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV-PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR-------LRPLSYPNT 72 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CceeeeeEEEEEECCEEEEEEEEeCCCcccccc-------cchhhcCCC
Confidence 589999999999999999999776422221 11111222223333 34689999999654311 111245789
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 73 ~~~i~v~d~~~~ 84 (171)
T cd00157 73 DVFLICFSVDSP 84 (171)
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 156
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.59 E-value=4.9e-14 Score=93.77 Aligned_cols=82 Identities=12% Similarity=0.059 Sum_probs=55.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.+|+++|.+|||||||++++....... .+..+........+.+++ ..+.+|||||.... ...+..+++.+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~l~~~~~~~~ 74 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD-YHDPTIEDAYKQQARIDNEPALLDILDTAGQAEF-------TAMRDQYMRCG 74 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC-CcCCcccceEEEEEEECCEEEEEEEEeCCCchhh-------HHHhHHHhhcC
Confidence 589999999999999999998655421 121121112222344555 46889999995432 22234567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 75 d~~ilv~d~~~~ 86 (172)
T cd04141 75 EGFIICYSVTDR 86 (172)
T ss_pred CEEEEEEECCch
Confidence 999999999987
No 157
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.59 E-value=3.5e-14 Score=96.07 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=59.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc-cCC---------------CCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE-AAS---------------YEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~-~~~---------------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
.+|+++|.+|||||||+++|.+.... ... ..+.|.......+..++..+.+|||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~----- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD----- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH-----
Confidence 47999999999999999999852111 111 123344444455667788999999999643
Q ss_pred chHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 66 KGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 66 ~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+......+++++|++++|+|+++.
T Consensus 78 --~~~~~~~~~~~~d~~ilV~d~~~~ 101 (194)
T cd01891 78 --FGGEVERVLSMVDGVLLLVDASEG 101 (194)
T ss_pred --HHHHHHHHHHhcCEEEEEEECCCC
Confidence 233455678999999999999874
No 158
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.59 E-value=8e-15 Score=96.58 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=53.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
|.+|+++|.+|||||||+|+|++.... . ...+.+.+... .+|||||....... ........++++|
T Consensus 1 ~~~i~~iG~~~~GKstl~~~l~~~~~~-~--------~~~~~v~~~~~--~~iDtpG~~~~~~~---~~~~~~~~~~~ad 66 (158)
T PRK15467 1 MKRIAFVGAVGAGKTTLFNALQGNYTL-A--------RKTQAVEFNDK--GDIDTPGEYFSHPR---WYHALITTLQDVD 66 (158)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCcc-C--------ccceEEEECCC--CcccCCccccCCHH---HHHHHHHHHhcCC
Confidence 468999999999999999999875421 0 12233333333 36999997543221 2233445678999
Q ss_pred EEEEEEeCCCCc
Q psy6249 81 LVLMMLDATKQD 92 (119)
Q Consensus 81 ~il~Vvd~~~~~ 92 (119)
++++|+|+++..
T Consensus 67 ~il~v~d~~~~~ 78 (158)
T PRK15467 67 MLIYVHGANDPE 78 (158)
T ss_pred EEEEEEeCCCcc
Confidence 999999999763
No 159
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=4.2e-14 Score=97.67 Aligned_cols=91 Identities=12% Similarity=0.002 Sum_probs=58.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeee--EEEEC--CeeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPG--VIEYK--GANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
+||+++|.+|||||||++++......... .+|...... .+..+ ...+.+|||||.... ...+..+++
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~~--~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~ 84 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYI 84 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCcc--CCccceeEEEEEEEECCeEEEEEEEECCCchhh-------hhhhHHHcc
Confidence 58999999999999999998755432111 222222222 23222 357899999995432 112234678
Q ss_pred CCCEEEEEEeCCCCchhHHHHHHHH
Q psy6249 78 TADLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
.+|++|+|+|.+++ ..++.+..++
T Consensus 85 ~~~~~ilvfD~~~~-~s~~~i~~w~ 108 (219)
T PLN03071 85 HGQCAIIMFDVTAR-LTYKNVPTWH 108 (219)
T ss_pred cccEEEEEEeCCCH-HHHHHHHHHH
Confidence 99999999999987 3334444443
No 160
>PRK04213 GTP-binding protein; Provisional
Probab=99.59 E-value=1.4e-14 Score=98.18 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=58.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCccccc--ccc--cchHHHH---HH-
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEG--AAQ--GKGRGRQ---VI- 73 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~--~~~--~~~~~~~---~~- 73 (119)
++|+++|++|||||||+|+|++....++..+++|..+.. +.++ .+.+|||||+... ..+ ...+... +.
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999877666666777665432 3333 6899999996321 111 1112221 22
Q ss_pred HHhcCCCEEEEEEeCCCC
Q psy6249 74 AVARTADLVLMMLDATKQ 91 (119)
Q Consensus 74 ~~~~~~d~il~Vvd~~~~ 91 (119)
+....++++++|+|+++.
T Consensus 86 ~~~~~~~~vi~v~d~~~~ 103 (201)
T PRK04213 86 DNADRILAAVLVVDGKSF 103 (201)
T ss_pred hhhhhheEEEEEEeCccc
Confidence 234567899999999753
No 161
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.59 E-value=4.6e-14 Score=94.15 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=57.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.+|+++|.+|||||||+.++...... ..+..+........+..++ .++.+|||||.... ......+++++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~~ 73 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-------DRLRPLSYPQT 73 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhh-------hhhhhhhcCCC
Confidence 68999999999999999999865432 2222222111122334444 46789999995322 11223367899
Q ss_pred CEEEEEEeCCCCchhHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLL 98 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~ 98 (119)
|++++|+|++++ +.++.+
T Consensus 74 d~~ilv~d~~~~-~sf~~~ 91 (174)
T cd01871 74 DVFLICFSLVSP-ASFENV 91 (174)
T ss_pred CEEEEEEECCCH-HHHHHH
Confidence 999999999987 334333
No 162
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.58 E-value=3.4e-14 Score=95.99 Aligned_cols=83 Identities=27% Similarity=0.261 Sum_probs=59.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCC-------cccCCCCCceeeeeeeEEEEC--------------CeeEEEEeCCcccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQ-------SEAASYEFTTLTCIPGVIEYK--------------GANIQLLDLPGIIE 60 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~-------~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~~DtpG~~~ 60 (119)
.+|+++|.+|+|||||+++|++.. ......+++|.......+.+. +..+.+|||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 479999999999999999998631 111223456666555545443 6789999999963
Q ss_pred cccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 61 GAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.+...+......+|++++|+|+++.
T Consensus 80 ------~~~~~~~~~~~~~d~vi~VvD~~~~ 104 (192)
T cd01889 80 ------SLIRTIIGGAQIIDLMLLVVDATKG 104 (192)
T ss_pred ------HHHHHHHHHHhhCCEEEEEEECCCC
Confidence 2344555667789999999999874
No 163
>KOG0071|consensus
Probab=99.58 E-value=2.4e-14 Score=91.78 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=76.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
+++|+++|..++||||++..|.-.+..+ ..+|+..+...+++.+..+.+||..|. ..++.-|..|+....
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~---~ipTvGFnvetVtykN~kfNvwdvGGq-------d~iRplWrhYy~gtq 86 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYKNVKFNVWDVGGQ-------DKIRPLWRHYYTGTQ 86 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcc---cccccceeEEEEEeeeeEEeeeeccCc-------hhhhHHHHhhccCCc
Confidence 5799999999999999999998665422 234667788889999999999999994 234455667889999
Q ss_pred EEEEEEeCCCCchhHHHHHHHHHHc
Q psy6249 81 LVLMMLDATKQDVQRGLLEKELESV 105 (119)
Q Consensus 81 ~il~Vvd~~~~~~~~~~~~~~l~~~ 105 (119)
++|||+|+++. ..+++.++||.+.
T Consensus 87 glIFV~Dsa~~-dr~eeAr~ELh~i 110 (180)
T KOG0071|consen 87 GLIFVVDSADR-DRIEEARNELHRI 110 (180)
T ss_pred eEEEEEeccch-hhHHHHHHHHHHH
Confidence 99999999997 6778888888553
No 164
>KOG0074|consensus
Probab=99.58 E-value=2.2e-14 Score=92.09 Aligned_cols=90 Identities=19% Similarity=0.263 Sum_probs=67.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECC-eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKG-ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+.+++++|..|+|||||++.|.+..+ .+ .+|...+.-.+.+.+ .++++||..| +++++..|-+|+.+
T Consensus 17 EirilllGldnAGKTT~LKqL~sED~~hl----tpT~GFn~k~v~~~g~f~LnvwDiGG-------qr~IRpyWsNYyen 85 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSEDPRHL----TPTNGFNTKKVEYDGTFHLNVWDIGG-------QRGIRPYWSNYYEN 85 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccCChhhc----cccCCcceEEEeecCcEEEEEEecCC-------ccccchhhhhhhhc
Confidence 46899999999999999999998775 22 123344555566666 7899999999 34555667789999
Q ss_pred CCEEEEEEeCCCCchhHHHHHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
.|.++||+|++|. ..++++.+++
T Consensus 86 vd~lIyVIDS~D~-krfeE~~~el 108 (185)
T KOG0074|consen 86 VDGLIYVIDSTDE-KRFEEISEEL 108 (185)
T ss_pred cceEEEEEeCCch-HhHHHHHHHH
Confidence 9999999998875 3344555454
No 165
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.58 E-value=4.3e-14 Score=109.64 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=76.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccc---hHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK---GRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~---~~~~~~~~~~~ 77 (119)
.+|+++|.+|+||||++|+|++.+. .++.....|..........++..+.+|||||+.+...... ++.....+.+.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Ls 198 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIK 198 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHh
Confidence 5799999999999999999998764 4444433444454444556788999999999987643221 22222323333
Q ss_pred --CCCEEEEEEeCCCC---chhHHHHHHHHHHcCCcccCCC
Q psy6249 78 --TADLVLMMLDATKQ---DVQRGLLEKELESVGIRLNKKK 113 (119)
Q Consensus 78 --~~d~il~Vvd~~~~---~~~~~~~~~~l~~~~~~~~~~~ 113 (119)
.+|++|+|.+.... .++...++..-+.||..++++.
T Consensus 199 k~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~t 239 (763)
T TIGR00993 199 KNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNA 239 (763)
T ss_pred cCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCE
Confidence 58999999886533 1344556666678888888664
No 166
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.58 E-value=5.7e-14 Score=98.75 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=56.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.+|+++|.+|||||||++++.+..... .+..+..+.....+.+++ ..+.+|||+|.... ......++..+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~-~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~-------~~~~~~~~~~a 72 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE-QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPF-------PAMRRLSILTG 72 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCChhHhEEEEEEECCEEEEEEEEECCCChhh-------hHHHHHHhccC
Confidence 489999999999999999998655432 222232223334455555 46789999995321 11122356789
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|.++.
T Consensus 73 d~iIlVfdv~~~ 84 (247)
T cd04143 73 DVFILVFSLDNR 84 (247)
T ss_pred CEEEEEEeCCCH
Confidence 999999999986
No 167
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.57 E-value=1.1e-13 Score=94.72 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=59.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeee--eeEEEEC-------CeeEEEEeCCcccccccccchHHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCI--PGVIEYK-------GANIQLLDLPGIIEGAAQGKGRGRQV 72 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~--~~~~~~~-------~~~~~~~DtpG~~~~~~~~~~~~~~~ 72 (119)
.||+++|.++||||||++++.+...... +.+|.... ...+.++ ...+.+|||+|... +....
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~--~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-------~~~l~ 71 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGR--PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES-------VKSTR 71 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC--CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh-------HHHHH
Confidence 4899999999999999999997654222 22333322 2223332 24689999999532 12223
Q ss_pred HHHhcCCCEEEEEEeCCCCchhHHHHHHH
Q psy6249 73 IAVARTADLVLMMLDATKQDVQRGLLEKE 101 (119)
Q Consensus 73 ~~~~~~~d~il~Vvd~~~~~~~~~~~~~~ 101 (119)
..+++++|++++|+|.+++ ..++.+..+
T Consensus 72 ~~~yr~ad~iIlVyDvtn~-~Sf~~l~~W 99 (202)
T cd04102 72 AVFYNQVNGIILVHDLTNR-KSSQNLQRW 99 (202)
T ss_pred HHHhCcCCEEEEEEECcCh-HHHHHHHHH
Confidence 3467999999999999997 333333333
No 168
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.57 E-value=9.7e-14 Score=92.39 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=55.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.+|+++|.+|||||||++++++.... ..+..++.......+.+++ ..+.+|||||..+. ......++..+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~ 73 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV-ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY-------SILPQKYSIGI 73 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-cccCcchhhhEEEEEEECCEEEEEEEEECCChHhh-------HHHHHHHHhhC
Confidence 58999999999999999999976542 2222222222233344444 45789999995431 12233466789
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|+++.
T Consensus 74 ~~~i~v~d~~~~ 85 (180)
T cd04137 74 HGYILVYSVTSR 85 (180)
T ss_pred CEEEEEEECCCH
Confidence 999999999985
No 169
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.57 E-value=5.5e-14 Score=93.24 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=56.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
+||+++|.+|+|||||++++.+... ..++..+........+..++ ..+.+|||||...... ....+++++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~a 72 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY-PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK-------LRPLCYPDT 72 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc-------ccccccCCC
Confidence 5899999999999999999976543 22333333222223344554 4678899999633211 112366899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|.+++
T Consensus 73 ~~~i~v~d~~~~ 84 (173)
T cd04130 73 DVFLLCFSVVNP 84 (173)
T ss_pred cEEEEEEECCCH
Confidence 999999999987
No 170
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.57 E-value=7.1e-14 Score=99.44 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=68.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcc------cC------------CCCCceeeeeeeEEEECCeeEEEEeCCcccccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSE------AA------------SYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ 64 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~------~~------------~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 64 (119)
.|+++|.+|+|||||+++|...... +. ...+.|+......+.+++.++.++||||..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 4899999999999999999632111 11 1345666777777888999999999999654
Q ss_pred cchHHHHHHHHhcCCCEEEEEEeCCCCc-hhHHHHHHHHHHcC
Q psy6249 65 GKGRGRQVIAVARTADLVLMMLDATKQD-VQRGLLEKELESVG 106 (119)
Q Consensus 65 ~~~~~~~~~~~~~~~d~il~Vvd~~~~~-~~~~~~~~~l~~~~ 106 (119)
+...+.+.++.+|++++|+|+.+.. .+...+...+...+
T Consensus 77 ---f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~ 116 (270)
T cd01886 77 ---FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYN 116 (270)
T ss_pred ---HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 2345667889999999999998752 23334444444443
No 171
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.56 E-value=7.9e-14 Score=92.20 Aligned_cols=82 Identities=13% Similarity=0.098 Sum_probs=54.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
+||+++|++|||||||++++.+.... ..+..+........+..++. .+.+|||||...... ....+++.+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 72 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-------LRPLSYPMT 72 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc-------cccccCCCC
Confidence 58999999999999999999876542 22222222222223445544 467999999643221 111356889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|.+++
T Consensus 73 ~~~ilv~~~~~~ 84 (174)
T cd04135 73 DVFLICFSVVNP 84 (174)
T ss_pred CEEEEEEECCCH
Confidence 999999999987
No 172
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.56 E-value=2.6e-14 Score=89.28 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=55.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcc----cCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSE----AASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
||+++|.+|||||||+++|.+.... .......+..............+.+||++|........ ...+..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-------~~~~~~ 73 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH-------QFFLKK 73 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTS-------HHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccc-------cchhhc
Confidence 7999999999999999999976643 11122222222222222233458899999964332222 123688
Q ss_pred CCEEEEEEeCCCCchhHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLL 98 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~ 98 (119)
+|++++|+|++++ ..++.+
T Consensus 74 ~d~~ilv~D~s~~-~s~~~~ 92 (119)
T PF08477_consen 74 ADAVILVYDLSDP-ESLEYL 92 (119)
T ss_dssp SCEEEEEEECCGH-HHHHHH
T ss_pred CcEEEEEEcCCCh-HHHHHH
Confidence 9999999999986 344443
No 173
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.55 E-value=1.5e-13 Score=95.09 Aligned_cols=89 Identities=10% Similarity=0.097 Sum_probs=56.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCcee--eeeeeEEEEC--CeeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTL--TCIPGVIEYK--GANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~--~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
++|+++|.+|||||||+++++........+. +|. +.....+.++ ...+.+|||||... + ... ..++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----~--~~~---~~~~ 70 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYD-ASGDDDTYERTVSVDGEESTLVVIDHWEQEM----W--TED---SCMQ 70 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcC-CCccccceEEEEEECCEEEEEEEEeCCCcch----H--HHh---HHhh
Confidence 4899999999999999999975543212221 121 2222334443 35788999999641 0 111 1334
Q ss_pred -CCCEEEEEEeCCCCchhHHHHHHH
Q psy6249 78 -TADLVLMMLDATKQDVQRGLLEKE 101 (119)
Q Consensus 78 -~~d~il~Vvd~~~~~~~~~~~~~~ 101 (119)
.+|++++|+|++++ ..++.+.++
T Consensus 71 ~~ad~iilV~d~td~-~S~~~~~~~ 94 (221)
T cd04148 71 YQGDAFVVVYSVTDR-SSFERASEL 94 (221)
T ss_pred cCCCEEEEEEECCCH-HHHHHHHHH
Confidence 89999999999997 334433333
No 174
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.55 E-value=1.6e-13 Score=97.44 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=59.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC----------------CC------CCceeeeeeeEEEECCeeEEEEeCCccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA----------------SY------EFTTLTCIPGVIEYKGANIQLLDLPGII 59 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~----------------~~------~~~t~~~~~~~~~~~~~~~~~~DtpG~~ 59 (119)
..|+++|.+|+|||||+++|+.....+. .+ .+.+.......+.+++..+.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4699999999999999999974322111 10 1223334455677889999999999964
Q ss_pred ccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 60 EGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+. .......++.+|++++|+|+++.
T Consensus 83 df-------~~~~~~~l~~aD~~IlVvda~~g 107 (267)
T cd04169 83 DF-------SEDTYRTLTAVDSAVMVIDAAKG 107 (267)
T ss_pred HH-------HHHHHHHHHHCCEEEEEEECCCC
Confidence 32 23455677899999999999875
No 175
>KOG1490|consensus
Probab=99.55 E-value=6.2e-15 Score=110.56 Aligned_cols=88 Identities=28% Similarity=0.411 Sum_probs=76.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccch-HHHH---HHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKG-RGRQ---VIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~-~~~~---~~~~~~ 77 (119)
.+.+++|.||+|||||+|.++.+..++.+|++||.....|.+.+.-..++++||||+.+..-+++. +..+ .+.+++
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLr 248 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLR 248 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999999999999988889999999999998777654 3333 445777
Q ss_pred CCCEEEEEEeCCCC
Q psy6249 78 TADLVLMMLDATKQ 91 (119)
Q Consensus 78 ~~d~il~Vvd~~~~ 91 (119)
.| |+|++|.+..
T Consensus 249 aa--VLYfmDLSe~ 260 (620)
T KOG1490|consen 249 SA--VLYFMDLSEM 260 (620)
T ss_pred hh--heeeeechhh
Confidence 55 9999999853
No 176
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.55 E-value=2.2e-13 Score=88.83 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=55.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+++++..... ..+.+++..........++ ..+.+|||||..+. .......++.+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~ 72 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-------AAIRDNYHRSG 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEECCEEEEEEEEECCChhhh-------hHHHHHHhhcC
Confidence 48999999999999999999865532 2222222222222333443 46889999995432 12233467889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|.+++
T Consensus 73 ~~~i~v~d~~~~ 84 (164)
T cd04139 73 EGFLLVFSITDM 84 (164)
T ss_pred CEEEEEEECCCH
Confidence 999999999886
No 177
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.55 E-value=6.4e-14 Score=91.56 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=61.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
||+++|.++||||||++++.+........+....+.....+..++ ..+.+||++|.... .......++++|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-------~~~~~~~~~~~~ 73 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF-------DSLRDIFYRNSD 73 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG-------HHHHHHHHTTES
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccc-------cccccccccccc
Confidence 799999999999999999997654322222111233344455544 46899999994321 122234578999
Q ss_pred EEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 81 LVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 81 ~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
++++|+|.+++ +.++.+..++..
T Consensus 74 ~~ii~fd~~~~-~S~~~~~~~~~~ 96 (162)
T PF00071_consen 74 AIIIVFDVTDE-ESFENLKKWLEE 96 (162)
T ss_dssp EEEEEEETTBH-HHHHTHHHHHHH
T ss_pred ccccccccccc-cccccccccccc
Confidence 99999999886 444444444433
No 178
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.55 E-value=2e-13 Score=92.31 Aligned_cols=87 Identities=14% Similarity=0.108 Sum_probs=57.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeee-eeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCI-PGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
++|+++|.+|||||||++++....... .+ .+|.... ...+..++ ..+.+|||+|.... ......++++
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~-~~-~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~-------~~l~~~~~~~ 74 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPK-EY-IPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY-------DRLRTLSYPQ 74 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCc-CC-CCceEeeeEEEEEECCEEEEEEEEECCCchhh-------hhhhhhhccC
Confidence 589999999999999999998655321 12 2233221 11233444 56889999995321 2223346789
Q ss_pred CCEEEEEEeCCCCchhHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLL 98 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~ 98 (119)
+|++++|+|.+++ ..++.+
T Consensus 75 a~~~ilvydit~~-~Sf~~~ 93 (191)
T cd01875 75 TNVFIICFSIASP-SSYENV 93 (191)
T ss_pred CCEEEEEEECCCH-HHHHHH
Confidence 9999999999997 334444
No 179
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.55 E-value=1.1e-13 Score=91.41 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=53.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 4 LRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
|+++|.+|||||||++++.+........ .+........+..++. .+.+|||||..+.. ......++.+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~ 72 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYV-PTVFENYSADVEVDGKPVELGLWDTAGQEDYD-------RLRPLSYPDTDV 72 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCC-CcEEeeeeEEEEECCEEEEEEEEECCCCcccc-------hhchhhcCCCCE
Confidence 5899999999999999999765432222 2221222223444443 58899999954321 112235689999
Q ss_pred EEEEEeCCCC
Q psy6249 82 VLMMLDATKQ 91 (119)
Q Consensus 82 il~Vvd~~~~ 91 (119)
+++|+|.+++
T Consensus 73 ~ilv~d~~~~ 82 (174)
T smart00174 73 FLICFSVDSP 82 (174)
T ss_pred EEEEEECCCH
Confidence 9999999986
No 180
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.55 E-value=1.7e-13 Score=91.88 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=55.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
+||+++|.+|||||||++++.+..... .+..+........+.+++ ..+.+|||+|.... ......+++++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~-------~~~~~~~~~~a 73 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPE-TYVPTVFENYTASFEIDEQRIELSLWDTSGSPYY-------DNVRPLCYPDS 73 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCC-CcCCceEEEEEEEEEECCEEEEEEEEECCCchhh-------hhcchhhcCCC
Confidence 689999999999999999998765422 222221111122344444 46789999995321 11122367899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|.+++
T Consensus 74 ~~~ilvfdit~~ 85 (178)
T cd04131 74 DAVLICFDISRP 85 (178)
T ss_pred CEEEEEEECCCh
Confidence 999999999987
No 181
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.55 E-value=1.7e-13 Score=95.01 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=58.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
..||+++|.+|||||||++++....... .+..+........+.+++ ..+.+|||+|... +......++++
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~-~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~-------~~~l~~~~~~~ 72 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPG-SYVPTVFENYTASFEIDKRRIELNMWDTSGSSY-------YDNVRPLAYPD 72 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCC-ccCCccccceEEEEEECCEEEEEEEEeCCCcHH-------HHHHhHHhccC
Confidence 3689999999999999999998765422 222221112222344554 4678899999432 11222346789
Q ss_pred CCEEEEEEeCCCCchhHHHH
Q psy6249 79 ADLVLMMLDATKQDVQRGLL 98 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~ 98 (119)
+|++++|+|.+++ +.++.+
T Consensus 73 ~d~illvfdis~~-~Sf~~i 91 (222)
T cd04173 73 SDAVLICFDISRP-ETLDSV 91 (222)
T ss_pred CCEEEEEEECCCH-HHHHHH
Confidence 9999999999997 334333
No 182
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.54 E-value=7.2e-15 Score=98.67 Aligned_cols=106 Identities=18% Similarity=0.281 Sum_probs=61.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE---CCeeEEEEeCCcccccccccchHHHHHHH---H
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY---KGANIQLLDLPGIIEGAAQGKGRGRQVIA---V 75 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~DtpG~~~~~~~~~~~~~~~~~---~ 75 (119)
..|.++|++|||||+||+.|....... ..++..++.+ ..+ .+..+.++|+||..+-+ .+++. +
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~---T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~~~ 72 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP---TVTSMENNIA-YNVNNSKGKKLRLVDIPGHPRLR-------SKLLDELKY 72 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS------B---SSEEEE-CCGSSTCGTCECEEEETT-HCCC-------HHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC---eeccccCCce-EEeecCCCCEEEEEECCCcHHHH-------HHHHHhhhc
Confidence 478999999999999999999764311 1122233332 222 35689999999975533 23333 4
Q ss_pred hcCCCEEEEEEeCCCCchhHHHHHHHHHHc--CCcccCCCCceee
Q psy6249 76 ARTADLVLMMLDATKQDVQRGLLEKELESV--GIRLNKKKPNIYF 118 (119)
Q Consensus 76 ~~~~d~il~Vvd~~~~~~~~~~~~~~l~~~--~~~~~~~~~~v~~ 118 (119)
...+.+||||+|++....++....+.|... ......+.++|+|
T Consensus 73 ~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLI 117 (181)
T PF09439_consen 73 LSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILI 117 (181)
T ss_dssp HGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEE
T ss_pred hhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEE
Confidence 788999999999986434444444444222 1222345555544
No 183
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.54 E-value=1.9e-13 Score=95.62 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=67.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccC------------------CCCCceeeeeeeEEEECCeeEEEEeCCcccccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAA------------------SYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ 64 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 64 (119)
.|+++|.+|+|||||+++|+.....+. ...+.|.......+.+++.++.+|||||..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 489999999999999999975322110 01233444555667788999999999997542
Q ss_pred cchHHHHHHHHhcCCCEEEEEEeCCCCch-hHHHHHHHHHHcC
Q psy6249 65 GKGRGRQVIAVARTADLVLMMLDATKQDV-QRGLLEKELESVG 106 (119)
Q Consensus 65 ~~~~~~~~~~~~~~~d~il~Vvd~~~~~~-~~~~~~~~l~~~~ 106 (119)
...+..+++.+|++++|+|+++... +.+.+.+.+...+
T Consensus 78 ----~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~ 116 (237)
T cd04168 78 ----IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLN 116 (237)
T ss_pred ----HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcC
Confidence 3345667899999999999998632 3344444454443
No 184
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.54 E-value=1.2e-13 Score=91.07 Aligned_cols=52 Identities=23% Similarity=0.371 Sum_probs=36.0
Q ss_pred eeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCCch--hHHHHHHHH
Q psy6249 48 ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQDV--QRGLLEKEL 102 (119)
Q Consensus 48 ~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~~~--~~~~~~~~l 102 (119)
..+.++||||+........ ..+.+++..+|++++|+++..... +.+.+.+..
T Consensus 101 ~~~~lvDtPG~~~~~~~~~---~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~ 154 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHT---EITEEYLPKADVVIFVVDANQDLTESDMEFLKQML 154 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTS---HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH
T ss_pred cceEEEeCCccccchhhhH---HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh
Confidence 5689999999976443332 345566799999999999998632 334444443
No 185
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.54 E-value=3e-13 Score=91.06 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=55.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeee-eeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTC-IPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+||+++|.++||||||++++...... ..+. +|... ....+..++ ..+.+|||+|... +......++++
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~-~~~~-pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~-------~~~~~~~~~~~ 76 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYV-PTVFENYTASFEIDTQRIELSLWDTSGSPY-------YDNVRPLSYPD 76 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-CccC-CceeeeeEEEEEECCEEEEEEEEECCCchh-------hHhhhhhhcCC
Confidence 68999999999999999999876542 2222 22221 122344444 4688999999422 11222346789
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|.+++
T Consensus 77 ad~~ilvyDit~~ 89 (182)
T cd04172 77 SDAVLICFDISRP 89 (182)
T ss_pred CCEEEEEEECCCH
Confidence 9999999999987
No 186
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.54 E-value=1.8e-13 Score=97.00 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=65.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCC------------------CCCceeeeeeeEEEECCeeEEEEeCCcccccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAAS------------------YEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ 64 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 64 (119)
+|+++|.+|||||||+|+|.+....+.. ..+.|.......+.+++..+.+|||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 4899999999999999999743221100 113344455566778889999999999643
Q ss_pred cchHHHHHHHHhcCCCEEEEEEeCCCCch-hHHHHHHHHHHcC
Q psy6249 65 GKGRGRQVIAVARTADLVLMMLDATKQDV-QRGLLEKELESVG 106 (119)
Q Consensus 65 ~~~~~~~~~~~~~~~d~il~Vvd~~~~~~-~~~~~~~~l~~~~ 106 (119)
+...+.+.++.+|++++|+|+++... ....+.+.+...+
T Consensus 77 ---f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~ 116 (268)
T cd04170 77 ---FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAG 116 (268)
T ss_pred ---HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcC
Confidence 23345567789999999999997622 3233334444433
No 187
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.53 E-value=2.6e-13 Score=90.08 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=55.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCC---------------CCCceeeeeeeEEEE-----CCeeEEEEeCCcccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAAS---------------YEFTTLTCIPGVIEY-----KGANIQLLDLPGIIEGA 62 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~---------------~~~~t~~~~~~~~~~-----~~~~~~~~DtpG~~~~~ 62 (119)
.|+++|.+|||||||+++|.+....+.. ..+.|..+....+.+ .+..+.+|||||..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 6899999999999999999864321100 112333332222323 3566889999997442
Q ss_pred cccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 63 AQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 63 ~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
...+..+++.+|++++|+|+++.
T Consensus 81 ------~~~~~~~~~~ad~~i~v~D~~~~ 103 (179)
T cd01890 81 ------SYEVSRSLAACEGALLLVDATQG 103 (179)
T ss_pred ------HHHHHHHHHhcCeEEEEEECCCC
Confidence 33445577899999999999875
No 188
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.51 E-value=2.8e-13 Score=91.34 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=54.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceee-eeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLT-CIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
.||+++|.+|||||||++++.+...... +. +|.. .....+..++ ..+.+|||||...... ....+++.
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~-~~-~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~-------l~~~~~~~ 71 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQV-YE-PTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR-------LRSLSYAD 71 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCc-cC-CcceeeeEEEEEECCEEEEEEEEECCCChhccc-------cccccccC
Confidence 4899999999999999999987654221 11 1221 1122233344 5688999999643211 11235689
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|.+++
T Consensus 72 a~~~ilv~dv~~~ 84 (189)
T cd04134 72 TDVIMLCFSVDSP 84 (189)
T ss_pred CCEEEEEEECCCH
Confidence 9999999999987
No 189
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.51 E-value=1.1e-13 Score=88.82 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=51.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.||+++|.+|||||||+|++.+.... +. .|. .+.+.. .+|||||.... ...+.......++++|+
T Consensus 1 ~kv~liG~~~vGKSsL~~~l~~~~~~---~~-~t~-----~~~~~~---~~iDt~G~~~~---~~~~~~~~~~~~~~ad~ 65 (142)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGEEIL---YK-KTQ-----AVEYND---GAIDTPGEYVE---NRRLYSALIVTAADADV 65 (142)
T ss_pred CeEEEECCCCCCHHHHHHHHcCCccc---cc-cce-----eEEEcC---eeecCchhhhh---hHHHHHHHHHHhhcCCE
Confidence 37999999999999999999876531 11 121 222333 68999996321 11112223345789999
Q ss_pred EEEEEeCCCCch
Q psy6249 82 VLMMLDATKQDV 93 (119)
Q Consensus 82 il~Vvd~~~~~~ 93 (119)
+++|+|++++..
T Consensus 66 vilv~d~~~~~s 77 (142)
T TIGR02528 66 IALVQSATDPES 77 (142)
T ss_pred EEEEecCCCCCc
Confidence 999999998743
No 190
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.51 E-value=5e-13 Score=103.69 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=62.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe-eEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA-NIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
++|+++|.+++|||||+++|++.+......++.|.......+.+++. .+++|||||..+. ...+.+.+..+|
T Consensus 88 p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-------~~~r~rga~~aD 160 (587)
T TIGR00487 88 PVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-------TSMRARGAKVTD 160 (587)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcch-------hhHHHhhhccCC
Confidence 68999999999999999999987665555555565544445555444 8999999996432 223345678999
Q ss_pred EEEEEEeCCCC
Q psy6249 81 LVLMMLDATKQ 91 (119)
Q Consensus 81 ~il~Vvd~~~~ 91 (119)
++++|+|+++.
T Consensus 161 iaILVVda~dg 171 (587)
T TIGR00487 161 IVVLVVAADDG 171 (587)
T ss_pred EEEEEEECCCC
Confidence 99999999874
No 191
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.50 E-value=2.7e-13 Score=88.17 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=60.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC--cccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccc------cchHHHHHHH
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ--SEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ------GKGRGRQVIA 74 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~------~~~~~~~~~~ 74 (119)
+|+++|.+|||||||+|.|++.. ...+..+++|.... .+..+ ..+.+|||||+...... .......+..
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~--~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLIN--FFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEE--EEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 48999999999999999999433 34444445544332 23333 38899999997553211 1111122333
Q ss_pred HhcCCCEEEEEEeCCCCc-hhHHHHHHHHHHcC
Q psy6249 75 VARTADLVLMMLDATKQD-VQRGLLEKELESVG 106 (119)
Q Consensus 75 ~~~~~d~il~Vvd~~~~~-~~~~~~~~~l~~~~ 106 (119)
...+++++++++|..... .....+.+.+..++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~ 110 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELG 110 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcC
Confidence 334678999999998652 22233445555544
No 192
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.50 E-value=3.8e-13 Score=91.55 Aligned_cols=99 Identities=16% Similarity=0.112 Sum_probs=68.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc----------------cCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE----------------AASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
.+|+++|..++|||||+++|++.... .....+.|.......+..++.++.++||||+.+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 57999999999999999999753110 001345566665555666788999999999642
Q ss_pred chHHHHHHHHhcCCCEEEEEEeCCCC-chhHHHHHHHHHHcCC
Q psy6249 66 KGRGRQVIAVARTADLVLMMLDATKQ-DVQRGLLEKELESVGI 107 (119)
Q Consensus 66 ~~~~~~~~~~~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~~~ 107 (119)
+.....+.+..+|++++|+|+... ..+...+...+...+.
T Consensus 78 --~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~ 118 (195)
T cd01884 78 --YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGV 118 (195)
T ss_pred --HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence 344566677899999999999874 2333344444555443
No 193
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.50 E-value=8.2e-13 Score=92.13 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=55.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.+|+++|.+|||||||++++....... .+..+........+..++ ..+.+|||+|... +......+++++
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~~-~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~-------~~~~~~~~~~~a 85 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVPTVFENYTAGLETEEQRVELSLWDTSGSPY-------YDNVRPLCYSDS 85 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCCC-CcCCceeeeeEEEEEECCEEEEEEEEeCCCchh-------hHHHHHHHcCCC
Confidence 589999999999999999998665422 222221111111233443 5688999999422 122233477999
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|.+++
T Consensus 86 d~vIlVyDit~~ 97 (232)
T cd04174 86 DAVLLCFDISRP 97 (232)
T ss_pred cEEEEEEECCCh
Confidence 999999999987
No 194
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.50 E-value=4.4e-13 Score=88.66 Aligned_cols=82 Identities=20% Similarity=0.187 Sum_probs=54.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.||+++|.+|||||||++++.+..... .+..+........+.+++ ..+.+|||||..+.. ......++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 73 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD-------RLRPLSYPDT 73 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccccceEEEEEECCEEEEEEEEeCCCchhhh-------hccccccCCC
Confidence 689999999999999999999765421 122222122223444554 357899999963321 1111356899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|.+++
T Consensus 74 d~~i~v~~~~~~ 85 (175)
T cd01870 74 DVILMCFSIDSP 85 (175)
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 195
>PLN00023 GTP-binding protein; Provisional
Probab=99.50 E-value=1e-12 Score=95.24 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeee--eeEEEEC---------------CeeEEEEeCCcccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCI--PGVIEYK---------------GANIQLLDLPGIIEGAAQ 64 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~--~~~~~~~---------------~~~~~~~DtpG~~~~~~~ 64 (119)
+||+++|..|||||||++++.+...... ...|+... ...+.++ ...+.+|||+|....
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~~--~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf--- 96 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIAR--PPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY--- 96 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcccc--cCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh---
Confidence 6899999999999999999987654211 22333332 2233332 245899999994322
Q ss_pred cchHHHHHHHHhcCCCEEEEEEeCCCC--chhHHHHHHHHHH
Q psy6249 65 GKGRGRQVIAVARTADLVLMMLDATKQ--DVQRGLLEKELES 104 (119)
Q Consensus 65 ~~~~~~~~~~~~~~~d~il~Vvd~~~~--~~~~~~~~~~l~~ 104 (119)
......+++++|++|+|+|.++. .+.+..+.+++..
T Consensus 97 ----rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~ 134 (334)
T PLN00023 97 ----KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAA 134 (334)
T ss_pred ----hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 22233468999999999999996 2334444444443
No 196
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.49 E-value=1e-12 Score=88.11 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=56.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeee-eeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTC-IPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
.||+++|.+++|||||+.++....... ++. +|... ....+..++ .++.+|||+|..+... ....++++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~-~~~-~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~-------~~~~~~~~ 72 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYI-PTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR-------LRPLSYRG 72 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCC-CcceeeeEEEEEECCEEEEEEEEECCCCccccc-------cchhhcCC
Confidence 589999999999999999999765422 222 22222 122234444 5678999999643322 12236789
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|.+++
T Consensus 73 a~~~ilvyd~~~~ 85 (176)
T cd04133 73 ADVFVLAFSLISR 85 (176)
T ss_pred CcEEEEEEEcCCH
Confidence 9999999999987
No 197
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.49 E-value=1e-12 Score=86.44 Aligned_cols=85 Identities=12% Similarity=0.039 Sum_probs=56.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||++++........ ++ ++.......+.+++ ..+.+|||+|... ..+.+.+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~-~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~~------------~~~~~~~ 66 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL-ES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPD------------AQFASWV 66 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC-CC-CCccceEEEEEECCEEEEEEEEECCCCCc------------hhHHhcC
Confidence 4899999999999999998865433211 11 12222233456666 4588999999632 1245789
Q ss_pred CEEEEEEeCCCCchhHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKE 101 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~ 101 (119)
|++++|+|.+++ +.++.+..+
T Consensus 67 ~~~ilv~d~~~~-~sf~~~~~~ 87 (158)
T cd04103 67 DAVIFVFSLENE-ASFQTVYNL 87 (158)
T ss_pred CEEEEEEECCCH-HHHHHHHHH
Confidence 999999999997 333443333
No 198
>KOG0410|consensus
Probab=99.49 E-value=1.5e-13 Score=98.77 Aligned_cols=106 Identities=22% Similarity=0.245 Sum_probs=80.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE-CCeeEEEEeCCccccccccc-chHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY-KGANIQLLDLPGIIEGAAQG-KGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~-~~~~~~~~~~~~~~ 79 (119)
+.|+++|+.|+|||||+|+||++.....+.-|.|.+++...... .|..+-+.||-|++..-+.. ......+++.+..+
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaea 258 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEA 258 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhc
Confidence 56999999999999999999966654445567777776655443 47788999999997754433 23445678889999
Q ss_pred CEEEEEEeCCCC--chhHHHHHHHHHHcCC
Q psy6249 80 DLVLMMLDATKQ--DVQRGLLEKELESVGI 107 (119)
Q Consensus 80 d~il~Vvd~~~~--~~~~~~~~~~l~~~~~ 107 (119)
|++++|+|.++| .++.+.+..-|...+.
T Consensus 259 dlllHvvDiShP~ae~q~e~Vl~vL~~igv 288 (410)
T KOG0410|consen 259 DLLLHVVDISHPNAEEQRETVLHVLNQIGV 288 (410)
T ss_pred ceEEEEeecCCccHHHHHHHHHHHHHhcCC
Confidence 999999999998 4455666666766665
No 199
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.49 E-value=8.9e-14 Score=92.98 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=45.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGI 58 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~ 58 (119)
.+++++|.||+|||||+|+|++.+. .+++.|++|...+...+ +..+.++||||+
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 5899999999999999999998776 78888999886554443 357899999995
No 200
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.48 E-value=3.2e-13 Score=101.32 Aligned_cols=82 Identities=20% Similarity=0.185 Sum_probs=63.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC-------------------------------CCCCceeeeeeeEEEECCeeE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA-------------------------------SYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~ 50 (119)
++|+++|.+++|||||+++|++....+. ..++.|++.....+..++..+
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i 86 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYF 86 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEE
Confidence 5799999999999999999984332111 146778888888888889999
Q ss_pred EEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCC
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATK 90 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~ 90 (119)
.+|||||..+ +.......+..+|++++|+|+++
T Consensus 87 ~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 87 TIVDCPGHRD-------FVKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred EEEECCCccc-------chhhHhhchhcCCEEEEEEEccc
Confidence 9999999532 22334455688999999999997
No 201
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.47 E-value=1.1e-12 Score=104.39 Aligned_cols=83 Identities=19% Similarity=0.182 Sum_probs=63.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
+.|+++|..++|||||+++|++........++.|.......+.+++..+++|||||.... ...+.+.+..+|+
T Consensus 291 pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F-------~~m~~rga~~aDi 363 (787)
T PRK05306 291 PVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAF-------TAMRARGAQVTDI 363 (787)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccc-------hhHHHhhhhhCCE
Confidence 689999999999999999998766554455555655544556677889999999996543 2233456788999
Q ss_pred EEEEEeCCCC
Q psy6249 82 VLMMLDATKQ 91 (119)
Q Consensus 82 il~Vvd~~~~ 91 (119)
+++|+|+++.
T Consensus 364 aILVVdAddG 373 (787)
T PRK05306 364 VVLVVAADDG 373 (787)
T ss_pred EEEEEECCCC
Confidence 9999999874
No 202
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.47 E-value=3.6e-13 Score=90.77 Aligned_cols=100 Identities=23% Similarity=0.222 Sum_probs=69.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC------------------CCCCceeeeeeeEEE--ECCeeEEEEeCCccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA------------------SYEFTTLTCIPGVIE--YKGANIQLLDLPGIIEG 61 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~------------------~~~~~t~~~~~~~~~--~~~~~~~~~DtpG~~~~ 61 (119)
..|+++|..++|||||+++|.+...... ...+.|.......+. ..+..++++||||..+
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~- 82 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED- 82 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH-
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc-
Confidence 4799999999999999999984332111 113445555555666 7789999999999533
Q ss_pred ccccchHHHHHHHHhcCCCEEEEEEeCCCC-chhHHHHHHHHHHcCCc
Q psy6249 62 AAQGKGRGRQVIAVARTADLVLMMLDATKQ-DVQRGLLEKELESVGIR 108 (119)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~~~~ 108 (119)
+.....+.++.+|++++|+|+.+. ..+.......+..++.+
T Consensus 83 ------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p 124 (188)
T PF00009_consen 83 ------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP 124 (188)
T ss_dssp ------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S
T ss_pred ------eeecccceecccccceeeeecccccccccccccccccccccc
Confidence 345566778999999999999875 33444444555555443
No 203
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.46 E-value=1.7e-13 Score=89.94 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=42.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGI 58 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~ 58 (119)
.+|+++|.||||||||+|+|.+... .+++.+++|+..+. +.. +..+.++||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITL-MKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEc-CCCEEEEECcCC
Confidence 3688999999999999999998665 67788888876433 332 346899999995
No 204
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.46 E-value=1.7e-12 Score=100.74 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=63.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc---ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS---EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+.|+++|.+|+|||||+|+|++... .....++.|.+.....+.+++..+.+||+||.. .+...+...+.+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------~f~~~~~~g~~~ 73 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------KFISNAIAGGGG 73 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------HHHHHHHhhhcc
Confidence 3689999999999999999997542 112234566666666677778899999999942 234456667789
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|+++.
T Consensus 74 aD~aILVVDa~~G 86 (581)
T TIGR00475 74 IDAALLVVDADEG 86 (581)
T ss_pred CCEEEEEEECCCC
Confidence 9999999999974
No 205
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.46 E-value=1.9e-12 Score=88.62 Aligned_cols=85 Identities=21% Similarity=0.136 Sum_probs=57.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC---CeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK---GANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
++|+++|.+|||||||++++.+........+. ......+..... ...+.+|||+|..+ +...+..+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~-------~~~~~~~y~~~ 77 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPT-IGNLDPAKTIEPYRRNIKLQLWDTAGQEE-------YRSLRPEYYRG 77 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCc-eeeeeEEEEEEeCCCEEEEEeecCCCHHH-------HHHHHHHHhcC
Confidence 58999999999999999999977653222221 112222222221 35688999999533 23334457799
Q ss_pred CCEEEEEEeCCCCchh
Q psy6249 79 ADLVLMMLDATKQDVQ 94 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~ 94 (119)
++++++++|.++....
T Consensus 78 ~~~~l~~~d~~~~~~~ 93 (219)
T COG1100 78 ANGILIVYDSTLRESS 93 (219)
T ss_pred CCEEEEEEecccchhh
Confidence 9999999999985333
No 206
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.45 E-value=1.3e-12 Score=82.64 Aligned_cols=79 Identities=23% Similarity=0.221 Sum_probs=52.8
Q ss_pred EEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE--CCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEE
Q psy6249 6 VLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY--KGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVL 83 (119)
Q Consensus 6 iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il 83 (119)
++|++|+|||||+|++.+..........+........... .+..+.+||+||..... ......++.+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~~~~i 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR-------SLRRLYYRGADGII 73 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHH-------hHHHHHhcCCCEEE
Confidence 5899999999999999976652222222212222222322 25678999999965432 12245678999999
Q ss_pred EEEeCCCC
Q psy6249 84 MMLDATKQ 91 (119)
Q Consensus 84 ~Vvd~~~~ 91 (119)
+|+|++++
T Consensus 74 ~v~d~~~~ 81 (157)
T cd00882 74 LVYDVTDR 81 (157)
T ss_pred EEEECcCH
Confidence 99999986
No 207
>KOG0090|consensus
Probab=99.45 E-value=6.2e-13 Score=90.56 Aligned_cols=107 Identities=18% Similarity=0.265 Sum_probs=75.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhc---C
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVAR---T 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~---~ 78 (119)
..|.++|+.+||||+||..|..... ....++.+++.+.+.++...++++|.||..+ +++....++. .
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~---~~TvtSiepn~a~~r~gs~~~~LVD~PGH~r-------lR~kl~e~~~~~~~ 108 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH---RGTVTSIEPNEATYRLGSENVTLVDLPGHSR-------LRRKLLEYLKHNYS 108 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc---cCeeeeeccceeeEeecCcceEEEeCCCcHH-------HHHHHHHHcccccc
Confidence 3689999999999999999985421 1234567899999999888899999999543 3455555554 7
Q ss_pred CCEEEEEEeCCCCchhHHHHHHHHHHc--CCcccCCCCceee
Q psy6249 79 ADLVLMMLDATKQDVQRGLLEKELESV--GIRLNKKKPNIYF 118 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~~~l~~~--~~~~~~~~~~v~~ 118 (119)
+-+|+||+|+..-..+.....+.|-.. +.+...++++|+|
T Consensus 109 akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLI 150 (238)
T KOG0090|consen 109 AKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLI 150 (238)
T ss_pred ceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 999999999987545555555554222 2222455666554
No 208
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.44 E-value=3e-12 Score=87.47 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=51.4
Q ss_pred EcCCCCCHHHHHHHHhCCCcccCCCCCceeeeee--eEEEEC--CeeEEEEeCCcccccccccchHHHHHHHHhcCCCEE
Q psy6249 7 LDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIP--GVIEYK--GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLV 82 (119)
Q Consensus 7 iG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 82 (119)
+|.+|||||||++++....... .+ .+|..... ..+.++ ...+.+|||||.... ......+++++|++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~-~~-~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~-------~~l~~~~~~~ad~~ 71 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK-KY-VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF-------GGLRDGYYIQGQCA 71 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC-CC-CCceeEEEEEEEEEECCEEEEEEEEECCCchhh-------hhhhHHHhcCCCEE
Confidence 6999999999999998654321 12 23333222 223333 357899999995332 22234578999999
Q ss_pred EEEEeCCCC
Q psy6249 83 LMMLDATKQ 91 (119)
Q Consensus 83 l~Vvd~~~~ 91 (119)
++|+|+++.
T Consensus 72 ilV~D~t~~ 80 (200)
T smart00176 72 IIMFDVTAR 80 (200)
T ss_pred EEEEECCCh
Confidence 999999997
No 209
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.43 E-value=2.2e-12 Score=101.94 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=64.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc------CC------------CCCceeeeeeeEEEECCeeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA------AS------------YEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~------~~------------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 63 (119)
.+|+++|.+|+|||||+|+|......+ .. ..+.|+......+.+++.++.+|||||+.+.
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~-- 88 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF-- 88 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch--
Confidence 379999999999999999996422211 11 2466777777888899999999999998653
Q ss_pred ccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 64 QGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 64 ~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.......++.+|++++|+|+++.
T Consensus 89 -----~~~~~~~l~~~D~~ilVvda~~g 111 (689)
T TIGR00484 89 -----TVEVERSLRVLDGAVAVLDAVGG 111 (689)
T ss_pred -----hHHHHHHHHHhCEEEEEEeCCCC
Confidence 22455677899999999999875
No 210
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.43 E-value=1.9e-12 Score=88.02 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=50.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCccc-CCC-CC---ceeeeeeeEEEE-CCeeEEEEeCCcccccccccchHHHHHHH
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEA-ASY-EF---TTLTCIPGVIEY-KGANIQLLDLPGIIEGAAQGKGRGRQVIA 74 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~-~~~-~~---~t~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 74 (119)
.++|+++|.+|||||||+|+|++..... ... .+ +|.. ...+.. ....+.+|||||+.+..... ..+++
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~l~l~DtpG~~~~~~~~----~~~l~ 74 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMK--RTPYPHPKFPNVTLWDLPGIGSTAFPP----DDYLE 74 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccC--ceeeecCCCCCceEEeCCCCCcccCCH----HHHHH
Confidence 3689999999999999999999854321 111 01 1211 111211 13478999999986543222 22232
Q ss_pred --HhcCCCEEEEEEeCC
Q psy6249 75 --VARTADLVLMMLDAT 89 (119)
Q Consensus 75 --~~~~~d~il~Vvd~~ 89 (119)
.+..+|++++|.|..
T Consensus 75 ~~~~~~~d~~l~v~~~~ 91 (197)
T cd04104 75 EMKFSEYDFFIIISSTR 91 (197)
T ss_pred HhCccCcCEEEEEeCCC
Confidence 246789999986544
No 211
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.43 E-value=2.5e-12 Score=101.65 Aligned_cols=83 Identities=19% Similarity=0.178 Sum_probs=59.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE----CCeeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY----KGANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
+.|+++|.+++|||||+++|++........++.|.......+.+ .+..+.+|||||... +...+.+.+.
T Consensus 245 p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-------F~~mr~rg~~ 317 (742)
T CHL00189 245 PIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-------FSSMRSRGAN 317 (742)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHH-------HHHHHHHHHH
Confidence 58999999999999999999976654444444444332222222 247899999999532 2233445778
Q ss_pred CCCEEEEEEeCCCC
Q psy6249 78 TADLVLMMLDATKQ 91 (119)
Q Consensus 78 ~~d~il~Vvd~~~~ 91 (119)
.+|++++|+|+++.
T Consensus 318 ~aDiaILVVDA~dG 331 (742)
T CHL00189 318 VTDIAILIIAADDG 331 (742)
T ss_pred HCCEEEEEEECcCC
Confidence 99999999999874
No 212
>CHL00071 tufA elongation factor Tu
Probab=99.42 E-value=2.8e-12 Score=95.98 Aligned_cols=98 Identities=16% Similarity=0.108 Sum_probs=66.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc----------------CCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA----------------ASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
++|+++|.+++|||||+++|++....+ ...++.|.......+..++.++.++||||+.
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~------ 86 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA------ 86 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH------
Confidence 479999999999999999998642211 1124556555554555667889999999953
Q ss_pred chHHHHHHHHhcCCCEEEEEEeCCCCc-hhHHHHHHHHHHcC
Q psy6249 66 KGRGRQVIAVARTADLVLMMLDATKQD-VQRGLLEKELESVG 106 (119)
Q Consensus 66 ~~~~~~~~~~~~~~d~il~Vvd~~~~~-~~~~~~~~~l~~~~ 106 (119)
.+.....+.+..+|++++|+|+.... .+...+...+...+
T Consensus 87 -~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g 127 (409)
T CHL00071 87 -DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVG 127 (409)
T ss_pred -HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 23445566778999999999998642 23333333344444
No 213
>KOG0080|consensus
Probab=99.42 E-value=3.1e-12 Score=83.86 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=66.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceee--eeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLT--CIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
+||.+||.+|+|||||+-+++..... ....+|+. .....+.+++ .++.+|||+|..+.+. -+..+++
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd--~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRt-------LTpSyyR 82 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFD--DLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRT-------LTPSYYR 82 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccC--ccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhc-------cCHhHhc
Confidence 68999999999999999999865532 22233333 2333455555 4677999999544322 2446889
Q ss_pred CCCEEEEEEeCCCC--chhHHHHHHHHHHc
Q psy6249 78 TADLVLMMLDATKQ--DVQRGLLEKELESV 105 (119)
Q Consensus 78 ~~d~il~Vvd~~~~--~~~~~~~~~~l~~~ 105 (119)
.|.++|.|.|.+.+ ...++.+.+|++.|
T Consensus 83 gaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Y 112 (209)
T KOG0080|consen 83 GAQGIILVYDVTSRDTFVKLDIWLKELDLY 112 (209)
T ss_pred cCceeEEEEEccchhhHHhHHHHHHHHHhh
Confidence 99999999999976 34556677777665
No 214
>PRK12739 elongation factor G; Reviewed
Probab=99.42 E-value=2.6e-12 Score=101.54 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=70.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc------cC------------CCCCceeeeeeeEEEECCeeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE------AA------------SYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~------~~------------~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 63 (119)
.+|+++|.+++|||||+++|...... +. ...+.|+......+.+++.++.++||||+.+
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~--- 85 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD--- 85 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH---
Confidence 37999999999999999999642111 11 1346677777777888999999999999754
Q ss_pred ccchHHHHHHHHhcCCCEEEEEEeCCCCc-hhHHHHHHHHHHcC
Q psy6249 64 QGKGRGRQVIAVARTADLVLMMLDATKQD-VQRGLLEKELESVG 106 (119)
Q Consensus 64 ~~~~~~~~~~~~~~~~d~il~Vvd~~~~~-~~~~~~~~~l~~~~ 106 (119)
+..++.+.++.+|++++|+|+++.. .+-..+...+...+
T Consensus 86 ----f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~ 125 (691)
T PRK12739 86 ----FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYG 125 (691)
T ss_pred ----HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcC
Confidence 2345677889999999999998762 22233444444443
No 215
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.41 E-value=5.4e-12 Score=86.18 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=54.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccc--CC-CCCceeeeeeeEEEEC---------------------------C-----
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEA--AS-YEFTTLTCIPGVIEYK---------------------------G----- 47 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~--~~-~~~~t~~~~~~~~~~~---------------------------~----- 47 (119)
.|+++|..++|||||+.+|++..... .+ ..+.|.......+.+. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 68999999999999999998653211 00 1111211111111110 2
Q ss_pred -eeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 48 -ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 48 -~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
..+.+|||||.. .+...++..+..+|++++|+|++++
T Consensus 82 ~~~i~~iDtPG~~-------~~~~~~~~~~~~~D~~llVvd~~~~ 119 (203)
T cd01888 82 VRHVSFVDCPGHE-------ILMATMLSGAAVMDGALLLIAANEP 119 (203)
T ss_pred ccEEEEEECCChH-------HHHHHHHHhhhcCCEEEEEEECCCC
Confidence 678999999942 3455677778899999999999974
No 216
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.41 E-value=9.3e-12 Score=85.41 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=52.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE----CCeeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY----KGANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
.||+++|++|||||||++++........ ..+|.........+ +...+.+|||+|.... ......+++
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~-------~~~~~~~~~ 80 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFEKK--YIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF-------GGLRDGYYI 80 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCC--CCCccceEEEEEEEEECCeEEEEEEEECCCchhh-------hhhhHHHhc
Confidence 5899999999999999976553332111 12233332222222 2467889999994321 122334667
Q ss_pred CCCEEEEEEeCCCC
Q psy6249 78 TADLVLMMLDATKQ 91 (119)
Q Consensus 78 ~~d~il~Vvd~~~~ 91 (119)
++|++++|+|.++.
T Consensus 81 ~~~~~i~v~d~~~~ 94 (215)
T PTZ00132 81 KGQCAIIMFDVTSR 94 (215)
T ss_pred cCCEEEEEEECcCH
Confidence 89999999999976
No 217
>KOG0078|consensus
Probab=99.41 E-value=7.8e-12 Score=84.84 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=70.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.++||||+++-++.......+....--++.....+..++ ..+++|||.|..+ ....+.+|++.|
T Consensus 13 ~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQer-------f~ti~~sYyrgA 85 (207)
T KOG0078|consen 13 FKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQER-------FRTITTAYYRGA 85 (207)
T ss_pred EEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchh-------HHHHHHHHHhhc
Confidence 5899999999999999999986654333221111223333455555 4678999999433 234466789999
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHHHcCCcccCCCCceee
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELESVGIRLNKKKPNIYF 118 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 118 (119)
+++++|+|.++. ..++.+..+++..++--....+.+++
T Consensus 86 ~gi~LvyDitne-~Sfeni~~W~~~I~e~a~~~v~~~Lv 123 (207)
T KOG0078|consen 86 MGILLVYDITNE-KSFENIRNWIKNIDEHASDDVVKILV 123 (207)
T ss_pred CeeEEEEEccch-HHHHHHHHHHHHHHhhCCCCCcEEEe
Confidence 999999999986 34444444554444333334444443
No 218
>KOG0094|consensus
Probab=99.41 E-value=6.2e-12 Score=84.63 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=62.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceee--eeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLT--CIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
.|++|+|..+|||||||++.......... ..|++ .....+.+.+ ..+++|||+|..++ ....-.|++
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~Y--qATIGiDFlskt~~l~d~~vrLQlWDTAGQERF-------rslipsY~R 93 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIR 93 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccc--cceeeeEEEEEEEEEcCcEEEEEEEecccHHHH-------hhhhhhhcc
Confidence 48999999999999999999866543222 22322 2222233443 57899999995433 223456899
Q ss_pred CCCEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 78 TADLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
++.++|.|+|.++. ..++...++++.
T Consensus 94 ds~vaviVyDit~~-~Sfe~t~kWi~d 119 (221)
T KOG0094|consen 94 DSSVAVIVYDITDR-NSFENTSKWIED 119 (221)
T ss_pred CCeEEEEEEecccc-chHHHHHHHHHH
Confidence 99999999999986 344444444443
No 219
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.40 E-value=3.3e-12 Score=88.20 Aligned_cols=82 Identities=22% Similarity=0.168 Sum_probs=61.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcc-------------------------------cCCCCCceeeeeeeEEEECCeeEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSE-------------------------------AASYEFTTLTCIPGVIEYKGANIQ 51 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 51 (119)
.|+++|.+++|||||+.+|...... .....+.|+......+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999522110 011346677777777888899999
Q ss_pred EEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 52 LLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 52 ~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+|||||..+ +...+.+.+..+|++++|+|+++.
T Consensus 81 liDtpG~~~-------~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRD-------FVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHH-------HHHHHHHHhhhCCEEEEEEECCCC
Confidence 999999632 234455677889999999999984
No 220
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.40 E-value=1.6e-12 Score=93.15 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=49.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
.+++++|.||||||||+|+|++.+. .+++.+++|+..+ .+.. +..+.++||||+.......
T Consensus 122 ~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPGi~~~~~~~ 183 (287)
T PRK09563 122 IRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKL-GKGLELLDTPGILWPKLED 183 (287)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEe-CCcEEEEECCCcCCCCCCc
Confidence 4799999999999999999998775 7788899988765 3333 3578999999997654433
No 221
>KOG0077|consensus
Probab=99.40 E-value=1.2e-12 Score=86.07 Aligned_cols=81 Identities=22% Similarity=0.264 Sum_probs=64.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLV 82 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 82 (119)
|++|+|..|+|||||++.|+..+.. ...+|.+|+...+.+.+.+++.+|..|.... .+-+..++..+|++
T Consensus 22 KllFlGLDNAGKTTLLHMLKdDrl~---qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qA-------rr~wkdyf~~v~~i 91 (193)
T KOG0077|consen 22 KLLFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELSIGGMTFTTFDLGGHLQA-------RRVWKDYFPQVDAI 91 (193)
T ss_pred eEEEEeecCCchhhHHHHHcccccc---ccCCCcCCChHHheecCceEEEEccccHHHH-------HHHHHHHHhhhcee
Confidence 7899999999999999999866542 2345777888888899999999999995332 23345578899999
Q ss_pred EEEEeCCCCch
Q psy6249 83 LMMLDATKQDV 93 (119)
Q Consensus 83 l~Vvd~~~~~~ 93 (119)
++.+|+.|.++
T Consensus 92 v~lvda~d~er 102 (193)
T KOG0077|consen 92 VYLVDAYDQER 102 (193)
T ss_pred EeeeehhhHHH
Confidence 99999999733
No 222
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.40 E-value=9.1e-13 Score=86.40 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=44.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGI 58 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~ 58 (119)
.+++++|.||+|||||+|+|++... .+++.+++|.......+ +..+.++||||+
T Consensus 101 ~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 101 ITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 5799999999999999999998764 67778888887765443 357899999995
No 223
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.39 E-value=1.1e-11 Score=83.35 Aligned_cols=82 Identities=17% Similarity=0.130 Sum_probs=53.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.+|+++|++|+|||||++++....... .+..+........+..++ ..+.+||+||....... ....++.+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-------~~~~~~~a 73 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL-------RPLSYSKA 73 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCChhcccc-------chhhcCCC
Confidence 589999999999999999998544321 111121122222334444 35789999996432111 11245889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++++|.++.
T Consensus 74 ~~~llv~~i~~~ 85 (187)
T cd04129 74 HVILIGFAVDTP 85 (187)
T ss_pred CEEEEEEECCCH
Confidence 999999999876
No 224
>PRK10218 GTP-binding protein; Provisional
Probab=99.39 E-value=9.7e-12 Score=96.85 Aligned_cols=83 Identities=20% Similarity=0.252 Sum_probs=62.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC----------------CCCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA----------------SYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
.+|+++|..++|||||+++|+....... ...+.|.......+.+++..+.+|||||..+.
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df---- 81 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF---- 81 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh----
Confidence 3799999999999999999986322111 12345555566667788999999999996543
Q ss_pred chHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 66 KGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 66 ~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
...+..+++.+|++++|+|+++.
T Consensus 82 ---~~~v~~~l~~aDg~ILVVDa~~G 104 (607)
T PRK10218 82 ---GGEVERVMSMVDSVLLVVDAFDG 104 (607)
T ss_pred ---HHHHHHHHHhCCEEEEEEecccC
Confidence 33455678999999999999875
No 225
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.39 E-value=6e-13 Score=89.83 Aligned_cols=54 Identities=26% Similarity=0.239 Sum_probs=43.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCC---------cccCCCCCceeeeeeeEEEECCeeEEEEeCCcc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQ---------SEAASYEFTTLTCIPGVIEYKGANIQLLDLPGI 58 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~---------~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~ 58 (119)
.+++++|.||+|||||+|+|.+.. ..++..+++|+.+....+. ..+.++||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 478999999999999999998643 2456778888887666552 26799999995
No 226
>KOG0394|consensus
Probab=99.39 E-value=2.8e-12 Score=85.56 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=68.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCcee--eeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTL--TCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~--~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
+||.++|.+|+|||||+|.....+..... ..|+ +.....+.+++ ..+++|||+|..+..+-+ ...++
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qy--kaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg-------~aFYR 80 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQY--KATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG-------VAFYR 80 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHh--ccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc-------cceec
Confidence 68999999999999999999865542111 1122 11222333444 467899999965543322 23569
Q ss_pred CCCEEEEEEeCCCC--chhHHHHHHHHHHc-CCcccCCCCceee
Q psy6249 78 TADLVLMMLDATKQ--DVQRGLLEKELESV-GIRLNKKKPNIYF 118 (119)
Q Consensus 78 ~~d~il~Vvd~~~~--~~~~~~~~~~l~~~-~~~~~~~~~~v~~ 118 (119)
.+|.+++|.|..++ .+.++.+++|+-.. ...--..=|.|++
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVil 124 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVIL 124 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEE
Confidence 99999999999987 45666777665333 3222244455554
No 227
>KOG0095|consensus
Probab=99.38 E-value=6e-12 Score=81.74 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=65.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCcee--eeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTL--TCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~--~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
+||+++|..|+|||.|+.+++..-.+.+. +.|+ +.....+++++ .++++|||.|..+ ++..+..+++
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgq--gatigvdfmiktvev~gekiklqiwdtagqer-------frsitqsyyr 78 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEVNGEKIKLQIWDTAGQER-------FRSITQSYYR 78 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCC--CceeeeeEEEEEEEECCeEEEEEEeeccchHH-------HHHHHHHHhh
Confidence 58999999999999999999855433222 2232 33344455665 4678999999433 2344667889
Q ss_pred CCCEEEEEEeCCCC--chhHHHHHHHHHHc
Q psy6249 78 TADLVLMMLDATKQ--DVQRGLLEKELESV 105 (119)
Q Consensus 78 ~~d~il~Vvd~~~~--~~~~~~~~~~l~~~ 105 (119)
.|+++++|.|.+.. .+-+..+..|++++
T Consensus 79 sahalilvydiscqpsfdclpewlreie~y 108 (213)
T KOG0095|consen 79 SAHALILVYDISCQPSFDCLPEWLREIEQY 108 (213)
T ss_pred hcceEEEEEecccCcchhhhHHHHHHHHHH
Confidence 99999999999975 33444555555554
No 228
>PRK00007 elongation factor G; Reviewed
Probab=99.38 E-value=6.5e-12 Score=99.31 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=69.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc---c---cC------------CCCCceeeeeeeEEEECCeeEEEEeCCcccccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS---E---AA------------SYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ 64 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~---~---~~------------~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 64 (119)
+|+++|.+|+|||||+++|..... . +. ...+.|+......+.+.+.++.++||||..+.
T Consensus 12 ni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f--- 88 (693)
T PRK00007 12 NIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF--- 88 (693)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH---
Confidence 799999999999999999963211 1 11 13566777777778889999999999996542
Q ss_pred cchHHHHHHHHhcCCCEEEEEEeCCCC-chhHHHHHHHHHHcC
Q psy6249 65 GKGRGRQVIAVARTADLVLMMLDATKQ-DVQRGLLEKELESVG 106 (119)
Q Consensus 65 ~~~~~~~~~~~~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~~ 106 (119)
..+..+.++.+|++++|+|+... ..+-..+...+...+
T Consensus 89 ----~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~ 127 (693)
T PRK00007 89 ----TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYK 127 (693)
T ss_pred ----HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcC
Confidence 33466678899999999999865 223333444444444
No 229
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.38 E-value=2.2e-12 Score=91.96 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=47.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 63 (119)
.+++++|.||||||||+|+|++.+. .+++.+++|...+ .+.. +..+.++||||+.....
T Consensus 119 ~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPG~~~~~~ 178 (276)
T TIGR03596 119 IRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKL-SDGLELLDTPGILWPKF 178 (276)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEe-CCCEEEEECCCcccCCC
Confidence 4799999999999999999998764 7788889888765 3433 34689999999966543
No 230
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.38 E-value=9.1e-12 Score=96.74 Aligned_cols=83 Identities=18% Similarity=0.100 Sum_probs=53.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE------------------CCeeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY------------------KGANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~~~~~DtpG~~~~~~ 63 (119)
+.|+++|.+|+|||||+|+|++.........+.|.......+.. ....+.+|||||....
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f-- 82 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF-- 82 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH--
Confidence 57999999999999999999977553222222332111111111 1124889999995322
Q ss_pred ccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 64 QGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 64 ~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.......++.+|++++|+|+++.
T Consensus 83 -----~~l~~~~~~~aD~~IlVvD~~~g 105 (590)
T TIGR00491 83 -----TNLRKRGGALADLAILIVDINEG 105 (590)
T ss_pred -----HHHHHHHHhhCCEEEEEEECCcC
Confidence 22234466899999999999974
No 231
>PRK12735 elongation factor Tu; Reviewed
Probab=99.38 E-value=8.2e-12 Score=93.11 Aligned_cols=98 Identities=16% Similarity=0.097 Sum_probs=65.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-----c-----------cCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-----E-----------AASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-----~-----------~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
++|+++|.+++|||||+++|++... . .....+.|.+.....+..++.++.++||||+.
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~------ 86 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA------ 86 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH------
Confidence 4699999999999999999986211 0 00134556655444455567789999999963
Q ss_pred chHHHHHHHHhcCCCEEEEEEeCCCC-chhHHHHHHHHHHcC
Q psy6249 66 KGRGRQVIAVARTADLVLMMLDATKQ-DVQRGLLEKELESVG 106 (119)
Q Consensus 66 ~~~~~~~~~~~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~~ 106 (119)
.+.......+..+|++++|+|+.+. ..+.......+...+
T Consensus 87 -~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~g 127 (396)
T PRK12735 87 -DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127 (396)
T ss_pred -HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcC
Confidence 2344556677899999999999874 233333333444444
No 232
>KOG0092|consensus
Probab=99.38 E-value=8.1e-12 Score=83.73 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=59.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeee--eeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTC--IPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
.|++++|..|||||||+-+....+.... .-+|++. ....+..++ .++.+|||.|.....+- .--|++
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~--~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sl-------apMYyR 76 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHEN--IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSL-------APMYYR 76 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccccc--cccccccEEEEEEEEeCCcEEEEEEEEcCCccccccc-------ccceec
Confidence 5899999999999999999876554211 1112221 111233344 56789999996432111 112779
Q ss_pred CCCEEEEEEeCCCCchhHHHHHHHHH
Q psy6249 78 TADLVLMMLDATKQDVQRGLLEKELE 103 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~~~~~~~~~~l~ 103 (119)
+|+++|+|+|.++. +.+..+++++.
T Consensus 77 gA~AAivvYDit~~-~SF~~aK~Wvk 101 (200)
T KOG0092|consen 77 GANAAIVVYDITDE-ESFEKAKNWVK 101 (200)
T ss_pred CCcEEEEEEecccH-HHHHHHHHHHH
Confidence 99999999999996 44555554443
No 233
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.37 E-value=1.3e-11 Score=96.08 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=69.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC----------------CCCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA----------------SYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
..|+++|..++|||||+++|........ ...+.|.......+.+++..+++|||||..+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF---- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF---- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH----
Confidence 3699999999999999999985322111 12345666666678889999999999996442
Q ss_pred chHHHHHHHHhcCCCEEEEEEeCCCC-chhHHHHHHHHHHcC
Q psy6249 66 KGRGRQVIAVARTADLVLMMLDATKQ-DVQRGLLEKELESVG 106 (119)
Q Consensus 66 ~~~~~~~~~~~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~~ 106 (119)
...+.+.++.+|++++|+|+++. ..+...+...+...+
T Consensus 78 ---~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ 116 (594)
T TIGR01394 78 ---GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELG 116 (594)
T ss_pred ---HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCC
Confidence 34556778899999999999864 334344444444433
No 234
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.37 E-value=1.4e-12 Score=94.80 Aligned_cols=59 Identities=25% Similarity=0.202 Sum_probs=48.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 63 (119)
.+++++|.|||||||+||+|.+.+. .+++.|++|.+-+.-.+ +..+.++||||+.....
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~---~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL---DDGIYLLDTPGIIPPKF 192 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc---CCCeEEecCCCcCCCCc
Confidence 4799999999999999999998876 78889998876554444 34589999999976543
No 235
>KOG0098|consensus
Probab=99.37 E-value=2e-11 Score=81.70 Aligned_cols=93 Identities=20% Similarity=0.181 Sum_probs=64.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeE--EEECC--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGV--IEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
+|+.++|..|||||+|+.+.+....... .-.|.....|. +.+++ .++++|||.|... +..-..++++
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~--hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~-------frsv~~syYr 77 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPV--HDLTIGVEFGARMVTIDGKQIKLQIWDTAGQES-------FRSVTRSYYR 77 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCcccc--ccceeeeeeceeEEEEcCceEEEEEEecCCcHH-------HHHHHHHHhc
Confidence 5899999999999999999987654211 12455444443 44444 5688999999533 2334556889
Q ss_pred CCCEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 78 TADLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
.+.++|+|.|.+.. +.++-|.++|+.
T Consensus 78 ~a~GalLVydit~r-~sF~hL~~wL~D 103 (216)
T KOG0098|consen 78 GAAGALLVYDITRR-ESFNHLTSWLED 103 (216)
T ss_pred cCcceEEEEEccch-hhHHHHHHHHHH
Confidence 99999999999986 444445545433
No 236
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.36 E-value=1.4e-11 Score=84.65 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=55.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCC-------------------CCCceeeeeeeEEEEC-----CeeEEEEeCCcc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAAS-------------------YEFTTLTCIPGVIEYK-----GANIQLLDLPGI 58 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~-------------------~~~~t~~~~~~~~~~~-----~~~~~~~DtpG~ 58 (119)
+|+++|..++|||||+++|......... ..+.|.......+.+. ...+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999854332110 0112222222222222 367899999996
Q ss_pred cccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 59 IEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.+. .......+..+|++++|+|+++.
T Consensus 82 ~~f-------~~~~~~~~~~aD~~llVvD~~~~ 107 (213)
T cd04167 82 VNF-------MDEVAAALRLSDGVVLVVDVVEG 107 (213)
T ss_pred cch-------HHHHHHHHHhCCEEEEEEECCCC
Confidence 542 23455677899999999999875
No 237
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.36 E-value=5.8e-12 Score=87.79 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=60.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcc-cCCCCCceeeeeeeEEEEC-CeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSE-AASYEFTTLTCIPGVIEYK-GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~-~~~~~~~t~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
||+++|+.+|||||+.+.+.....+ ...+-++|.+.....+... ...+++||+||........ ...+...-+++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~--~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY--FNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT--HTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc--ccccHHHHHhccC
Confidence 7999999999999999999976542 2233455666666666544 5589999999976542221 0112233568999
Q ss_pred EEEEEEeCCCC--chhHHHHHHHH
Q psy6249 81 LVLMMLDATKQ--DVQRGLLEKEL 102 (119)
Q Consensus 81 ~il~Vvd~~~~--~~~~~~~~~~l 102 (119)
++|||+|+.+. .+++..+.+.+
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i 102 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCI 102 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHH
T ss_pred EEEEEEEcccccHHHHHHHHHHHH
Confidence 99999999943 34444444433
No 238
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.36 E-value=1.4e-11 Score=94.65 Aligned_cols=97 Identities=21% Similarity=0.159 Sum_probs=64.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc----------------CC------CCCceeeeeeeEEEECCeeEEEEeCCccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA----------------AS------YEFTTLTCIPGVIEYKGANIQLLDLPGII 59 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~----------------~~------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~ 59 (119)
.+|+++|.+++|||||.++|+.....+ +. ..+.|.......+.+++..+++|||||..
T Consensus 11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~ 90 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE 90 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCch
Confidence 479999999999999999996322111 10 01223334445577788999999999964
Q ss_pred ccccccchHHHHHHHHhcCCCEEEEEEeCCCCc-hhHHHHHHHHHHc
Q psy6249 60 EGAAQGKGRGRQVIAVARTADLVLMMLDATKQD-VQRGLLEKELESV 105 (119)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~~-~~~~~~~~~l~~~ 105 (119)
+. .....+.++.+|++++|+|+++.. .+...+.+.....
T Consensus 91 df-------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~ 130 (526)
T PRK00741 91 DF-------SEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR 130 (526)
T ss_pred hh-------HHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc
Confidence 32 334566778999999999998752 2333343433333
No 239
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.36 E-value=2.5e-12 Score=83.13 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=42.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGII 59 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~ 59 (119)
+++++|.+|+|||||+|+|.+... .++..+++|...+. +..++ .+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT--IFLTP-TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE--EEeCC-CEEEEECCCcC
Confidence 689999999999999999997765 66667777765443 44433 68999999975
No 240
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.35 E-value=2.2e-11 Score=93.66 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=64.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC----------------C------CCCceeeeeeeEEEECCeeEEEEeCCccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA----------------S------YEFTTLTCIPGVIEYKGANIQLLDLPGII 59 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~----------------~------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~ 59 (119)
.+|+++|.+++|||||+++|......+. . ..+.|.......+.+++..+.+|||||..
T Consensus 12 RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~ 91 (527)
T TIGR00503 12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHE 91 (527)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChh
Confidence 4799999999999999999853221110 0 01233334445577788999999999964
Q ss_pred ccccccchHHHHHHHHhcCCCEEEEEEeCCCC-chhHHHHHHHHH
Q psy6249 60 EGAAQGKGRGRQVIAVARTADLVLMMLDATKQ-DVQRGLLEKELE 103 (119)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~-~~~~~~~~~~l~ 103 (119)
+ +.....+.++.+|++++|+|+++. ..+.+.+.+.+.
T Consensus 92 d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~ 129 (527)
T TIGR00503 92 D-------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTR 129 (527)
T ss_pred h-------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 2 234456678899999999999875 233344444443
No 241
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.35 E-value=7e-12 Score=85.28 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=50.2
Q ss_pred ceEEEEcCCCCCHHHHHH-HHhCCCcc----cCCCCCceeee---ee-e-------EEEECC--eeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLS-TLTHTQSE----AASYEFTTLTC---IP-G-------VIEYKG--ANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin-~l~~~~~~----~~~~~~~t~~~---~~-~-------~~~~~~--~~~~~~DtpG~~~~~~ 63 (119)
+||+++|.+|||||||++ ++.+.... ...+ .+|... .. . ...+++ ..+.+|||+|..+.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~-~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATH-VPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCcccc-CCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 689999999999999996 55433211 1112 122211 00 0 012333 57889999996321
Q ss_pred ccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 64 QGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 64 ~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
....+++++|++++|+|.+++
T Consensus 80 -------~~~~~~~~ad~iilv~d~t~~ 100 (195)
T cd01873 80 -------DRRFAYGRSDVVLLCFSIASP 100 (195)
T ss_pred -------hhcccCCCCCEEEEEEECCCh
Confidence 011267899999999999986
No 242
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.35 E-value=1.3e-11 Score=85.76 Aligned_cols=96 Identities=17% Similarity=0.039 Sum_probs=65.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC--CcccCC-CCCceeeeeeeEEEE---CCeeEEEEeCCcccccccccchHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT--QSEAAS-YEFTTLTCIPGVIEY---KGANIQLLDLPGIIEGAAQGKGRGRQVIAVA 76 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~--~~~~~~-~~~~t~~~~~~~~~~---~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~ 76 (119)
-|+++|++++|||||+|.|.+. ...+++ ...+|.+...+..+. .+..+.++||||+.+....... ....+..+
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~-~~~~~~~l 87 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFE-DDARLFAL 87 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchh-hhhHHHHH
Confidence 5899999999999999999988 444443 456777666665554 3578999999998765332201 11122222
Q ss_pred --cCCCEEEEEEeCCCCchhHHHHH
Q psy6249 77 --RTADLVLMMLDATKQDVQRGLLE 99 (119)
Q Consensus 77 --~~~d~il~Vvd~~~~~~~~~~~~ 99 (119)
--+++++|.++......+++.+.
T Consensus 88 ~~llss~~i~n~~~~~~~~~~~~l~ 112 (224)
T cd01851 88 ATLLSSVLIYNSWETILGDDLAALM 112 (224)
T ss_pred HHHHhCEEEEeccCcccHHHHHHHH
Confidence 24899999999987655544433
No 243
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.34 E-value=2.9e-11 Score=86.31 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=41.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCC--------CCce--eeeeeeEEEECC--eeEEEEeCCcccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASY--------EFTT--LTCIPGVIEYKG--ANIQLLDLPGIIEGA 62 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~--------~~~t--~~~~~~~~~~~~--~~~~~~DtpG~~~~~ 62 (119)
++|+++|.+|+|||||+|+|.+........ ...| .......+..++ .++++|||||+.+..
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~ 77 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNI 77 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccc
Confidence 689999999999999999999776532211 1122 223333444455 468999999986653
No 244
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.34 E-value=5.4e-12 Score=94.82 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC-------------------------------CCCCceeeeeeeEEEECCeeE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA-------------------------------SYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~ 50 (119)
++|+++|..++|||||+++|+.....+. ...+.|.+.....+..++..+
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i 87 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEV 87 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEE
Confidence 4799999999999999999974221110 123566666666777778899
Q ss_pred EEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.+|||||.. .+...+...+..+|++++|+|+++.
T Consensus 88 ~iiDtpGh~-------~f~~~~~~~~~~aD~~ilVvDa~~~ 121 (426)
T TIGR00483 88 TIVDCPGHR-------DFIKNMITGASQADAAVLVVAVGDG 121 (426)
T ss_pred EEEECCCHH-------HHHHHHHhhhhhCCEEEEEEECCCC
Confidence 999999942 2334455567889999999999986
No 245
>PRK00049 elongation factor Tu; Reviewed
Probab=99.34 E-value=2e-11 Score=91.10 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=66.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc----------------cCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE----------------AASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
++|+++|..++|||||+++|++.... .....+.|.+.....+..++.++.++||||+.
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~------ 86 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA------ 86 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH------
Confidence 47999999999999999999863110 00134566665544555567889999999963
Q ss_pred chHHHHHHHHhcCCCEEEEEEeCCCC-chhHHHHHHHHHHcC
Q psy6249 66 KGRGRQVIAVARTADLVLMMLDATKQ-DVQRGLLEKELESVG 106 (119)
Q Consensus 66 ~~~~~~~~~~~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~~ 106 (119)
.+.......+..+|++++|+|+... ..+...+...+...+
T Consensus 87 -~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g 127 (396)
T PRK00049 87 -DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127 (396)
T ss_pred -HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcC
Confidence 2334455667899999999999874 223333334444444
No 246
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.34 E-value=8.1e-12 Score=80.92 Aligned_cols=75 Identities=28% Similarity=0.313 Sum_probs=51.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
|.+|.+||+.+||||||+++|.+..... ..| ..+.+.+ .++||||-+-.. ..+.........+||
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~~~~~----~KT-----q~i~~~~---~~IDTPGEyiE~---~~~y~aLi~ta~dad 65 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGEEIRY----KKT-----QAIEYYD---NTIDTPGEYIEN---PRFYHALIVTAQDAD 65 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCCCCCc----Ccc-----ceeEecc---cEEECChhheeC---HHHHHHHHHHHhhCC
Confidence 7899999999999999999998765311 011 2233333 459999954321 112334445567999
Q ss_pred EEEEEEeCCC
Q psy6249 81 LVLMMLDATK 90 (119)
Q Consensus 81 ~il~Vvd~~~ 90 (119)
.|++|.|+++
T Consensus 66 ~V~ll~dat~ 75 (143)
T PF10662_consen 66 VVLLLQDATE 75 (143)
T ss_pred EEEEEecCCC
Confidence 9999999973
No 247
>PLN03127 Elongation factor Tu; Provisional
Probab=99.33 E-value=2.9e-11 Score=91.39 Aligned_cols=98 Identities=15% Similarity=0.077 Sum_probs=66.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc----------------ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS----------------EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
++|+++|..++|||||+++|++... +....++.|++.....++.++.++.++||||+.+
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~----- 136 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD----- 136 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-----
Confidence 4699999999999999999973210 0111256677766666666678899999999632
Q ss_pred chHHHHHHHHhcCCCEEEEEEeCCCC-chhHHHHHHHHHHcC
Q psy6249 66 KGRGRQVIAVARTADLVLMMLDATKQ-DVQRGLLEKELESVG 106 (119)
Q Consensus 66 ~~~~~~~~~~~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~~ 106 (119)
+.......+..+|++++|+|+... ..+...+...+...+
T Consensus 137 --f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~g 176 (447)
T PLN03127 137 --YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG 176 (447)
T ss_pred --hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC
Confidence 334444555679999999999864 223333333444444
No 248
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.32 E-value=1.3e-11 Score=96.75 Aligned_cols=83 Identities=20% Similarity=0.181 Sum_probs=60.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCC---------------------------------CCCceeeeeeeEEEECCe
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAAS---------------------------------YEFTTLTCIPGVIEYKGA 48 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~---------------------------------~~~~t~~~~~~~~~~~~~ 48 (119)
++|+++|.+|+|||||+++|......+.. ..+.|++.....+..++.
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~ 104 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKR 104 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCc
Confidence 47999999999999999999854332110 123455555566777788
Q ss_pred eEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 49 NIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 49 ~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
++.++||||..+ +.......+..+|++++|+|+...
T Consensus 105 ~~~liDtPG~~~-------f~~~~~~~~~~aD~~llVvda~~g 140 (632)
T PRK05506 105 KFIVADTPGHEQ-------YTRNMVTGASTADLAIILVDARKG 140 (632)
T ss_pred eEEEEECCChHH-------HHHHHHHHHHhCCEEEEEEECCCC
Confidence 999999999532 233344567899999999999764
No 249
>PRK13351 elongation factor G; Reviewed
Probab=99.32 E-value=2.8e-11 Score=95.65 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc------C------C------CCCceeeeeeeEEEECCeeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA------A------S------YEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~------~------~------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 63 (119)
.+|+++|..++|||||+++|......+ . . ..+.|.......+.+++..+++|||||..+.
T Consensus 9 rni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df-- 86 (687)
T PRK13351 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF-- 86 (687)
T ss_pred cEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH--
Confidence 489999999999999999997432111 0 0 1234555555667788999999999996542
Q ss_pred ccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 64 QGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 64 ~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
...+...++.+|++++|+|+++.
T Consensus 87 -----~~~~~~~l~~aD~~ilVvd~~~~ 109 (687)
T PRK13351 87 -----TGEVERSLRVLDGAVVVFDAVTG 109 (687)
T ss_pred -----HHHHHHHHHhCCEEEEEEeCCCC
Confidence 33456678999999999999876
No 250
>KOG0076|consensus
Probab=99.31 E-value=8.6e-12 Score=82.52 Aligned_cols=83 Identities=23% Similarity=0.210 Sum_probs=64.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-c--cC--CCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-E--AA--SYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVA 76 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~--~~--~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~ 76 (119)
+.|+|+|+.|||||||+-++..... . .. ..-.+|...+.+.+......+.+||..|.. .....+-.++
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe-------~lrSlw~~yY 90 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE-------SLRSLWKKYY 90 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH-------HHHHHHHHHH
Confidence 5689999999999999998864332 1 11 123467788999999999999999999943 2334455688
Q ss_pred cCCCEEEEEEeCCCC
Q psy6249 77 RTADLVLMMLDATKQ 91 (119)
Q Consensus 77 ~~~d~il~Vvd~~~~ 91 (119)
..||+++||+||+++
T Consensus 91 ~~~H~ii~viDa~~~ 105 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDR 105 (197)
T ss_pred HHhceeEEeecCCCH
Confidence 899999999999996
No 251
>PRK12736 elongation factor Tu; Reviewed
Probab=99.31 E-value=4e-11 Score=89.36 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=59.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc----------------CCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA----------------ASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
++|+++|..++|||||+++|++..... ....+.|.+.....+..++.++.++||||..
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~------ 86 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA------ 86 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH------
Confidence 479999999999999999998632110 0134556655444454567789999999953
Q ss_pred chHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 66 KGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 66 ~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
++.....+.+..+|++++|+|++..
T Consensus 87 -~f~~~~~~~~~~~d~~llVvd~~~g 111 (394)
T PRK12736 87 -DYVKNMITGAAQMDGAILVVAATDG 111 (394)
T ss_pred -HHHHHHHHHHhhCCEEEEEEECCCC
Confidence 2334556667889999999999864
No 252
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.31 E-value=6.6e-11 Score=92.48 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=60.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc---cCCCCCceeeeeeeEEEE-CCeeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE---AASYEFTTLTCIPGVIEY-KGANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~---~~~~~~~t~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
+-|+++|..++|||||+++|++.+.. .....+.|.+.....+.. ++..+.+|||||.. .+.......+.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-------~fi~~m~~g~~ 73 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-------KFLSNMLAGVG 73 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-------HHHHHHHHHhh
Confidence 35899999999999999999975431 122345666554444433 46778999999952 23345566778
Q ss_pred CCCEEEEEEeCCCC
Q psy6249 78 TADLVLMMLDATKQ 91 (119)
Q Consensus 78 ~~d~il~Vvd~~~~ 91 (119)
.+|++++|+|+.+.
T Consensus 74 ~~D~~lLVVda~eg 87 (614)
T PRK10512 74 GIDHALLVVACDDG 87 (614)
T ss_pred cCCEEEEEEECCCC
Confidence 99999999999874
No 253
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.31 E-value=5.3e-11 Score=82.58 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=56.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCC----------------CCCceeeeeeeEEEEC----------CeeEEEEeCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAAS----------------YEFTTLTCIPGVIEYK----------GANIQLLDLP 56 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~----------~~~~~~~Dtp 56 (119)
.|+++|..++|||||+.+|......++. ..+.|.......+.+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999743321110 1122322222223333 5678999999
Q ss_pred cccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 57 GIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 57 G~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
|..+. .......++.+|++++|+|++..
T Consensus 82 G~~~f-------~~~~~~~l~~aD~~ilVvD~~~g 109 (222)
T cd01885 82 GHVDF-------SSEVTAALRLCDGALVVVDAVEG 109 (222)
T ss_pred Ccccc-------HHHHHHHHHhcCeeEEEEECCCC
Confidence 97542 34566788999999999999975
No 254
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.30 E-value=4.9e-11 Score=92.78 Aligned_cols=83 Identities=18% Similarity=0.095 Sum_probs=51.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE------------------CCeeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY------------------KGANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~~~~~DtpG~~~~~~ 63 (119)
+.|+++|.+|+|||||+|+|++...........|...-...... .-..+.+|||||....
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f-- 84 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF-- 84 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH--
Confidence 67999999999999999999876532222211121110000000 0012789999996432
Q ss_pred ccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 64 QGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 64 ~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.....+.+..+|++++|+|+++.
T Consensus 85 -----~~~~~~~~~~aD~~IlVvDa~~g 107 (586)
T PRK04004 85 -----TNLRKRGGALADIAILVVDINEG 107 (586)
T ss_pred -----HHHHHHhHhhCCEEEEEEECCCC
Confidence 22233456789999999999974
No 255
>PLN03126 Elongation factor Tu; Provisional
Probab=99.30 E-value=5.8e-11 Score=90.40 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=60.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc----------------CCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA----------------ASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
++|+++|.+++|||||+++|++....+ ....+.|.+.....+..++.++.++|+||+.+
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~----- 156 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD----- 156 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH-----
Confidence 469999999999999999998532111 11244555555555666788999999999643
Q ss_pred chHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 66 KGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 66 ~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+.......+..+|++++|+|+.+.
T Consensus 157 --f~~~~~~g~~~aD~ailVVda~~G 180 (478)
T PLN03126 157 --YVKNMITGAAQMDGAILVVSGADG 180 (478)
T ss_pred --HHHHHHHHHhhCCEEEEEEECCCC
Confidence 334556667889999999999865
No 256
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.29 E-value=4.7e-11 Score=88.99 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=59.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc----------------cCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE----------------AASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
++|+++|..++|||||+++|++.... .....+.|.+.....+..++.++.+|||||..+
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~----- 87 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD----- 87 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH-----
Confidence 47999999999999999999743100 011256666655445555577899999999632
Q ss_pred chHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 66 KGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 66 ~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+...+...+.++|++++|+|+...
T Consensus 88 --f~~~~~~~~~~~D~~ilVvda~~g 111 (394)
T TIGR00485 88 --YVKNMITGAAQMDGAILVVSATDG 111 (394)
T ss_pred --HHHHHHHHHhhCCEEEEEEECCCC
Confidence 334555666889999999999874
No 257
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.29 E-value=1.3e-11 Score=91.13 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=44.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC------cccCCCCCceeeeeeeEEEECCeeEEEEeCCccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ------SEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEG 61 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~ 61 (119)
++.++|.+|||||||+|+|++.. ..++..|++|.......+ +..+.++||||+...
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINS 217 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCCh
Confidence 68999999999999999998743 256788999887654433 334689999999754
No 258
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.29 E-value=3.9e-11 Score=89.77 Aligned_cols=83 Identities=22% Similarity=0.215 Sum_probs=60.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCC---------------------------------CCCceeeeeeeEEEECCe
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAAS---------------------------------YEFTTLTCIPGVIEYKGA 48 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~---------------------------------~~~~t~~~~~~~~~~~~~ 48 (119)
++|+++|..++|||||+++|......+.. ..+.|.+.....+.+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999633221110 123455666666777788
Q ss_pred eEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 49 NIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 49 ~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
++.++||||+.+ +.......+..+|++++|+|+...
T Consensus 81 ~~~liDtPGh~~-------f~~~~~~~~~~aD~allVVda~~G 116 (406)
T TIGR02034 81 KFIVADTPGHEQ-------YTRNMATGASTADLAVLLVDARKG 116 (406)
T ss_pred EEEEEeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCC
Confidence 999999999533 233444567899999999999865
No 259
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.29 E-value=1.1e-11 Score=82.60 Aligned_cols=54 Identities=26% Similarity=0.214 Sum_probs=43.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGI 58 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~ 58 (119)
++++++|.+|+|||||+|+|++... .++..+++|...+...+ . ..+.++||||+
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~--~-~~~~~iDtpG~ 170 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI--S-PGIYLLDTPGI 170 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe--c-CCEEEEECCCC
Confidence 4799999999999999999998765 56677788876655433 2 56899999996
No 260
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.28 E-value=7.2e-11 Score=89.90 Aligned_cols=83 Identities=20% Similarity=0.212 Sum_probs=59.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCC---------------------------------CCCceeeeeeeEEEECCe
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAAS---------------------------------YEFTTLTCIPGVIEYKGA 48 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~---------------------------------~~~~t~~~~~~~~~~~~~ 48 (119)
++|+++|..++|||||+++|......+.. ..+.|++.....+..++.
T Consensus 28 ~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~ 107 (474)
T PRK05124 28 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKR 107 (474)
T ss_pred eEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCCc
Confidence 58999999999999999999744321111 123345555555666788
Q ss_pred eEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 49 NIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 49 ~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
++.++||||.. .+.......+..+|++++|+|+...
T Consensus 108 ~i~~iDTPGh~-------~f~~~~~~~l~~aD~allVVDa~~G 143 (474)
T PRK05124 108 KFIIADTPGHE-------QYTRNMATGASTCDLAILLIDARKG 143 (474)
T ss_pred EEEEEECCCcH-------HHHHHHHHHHhhCCEEEEEEECCCC
Confidence 99999999942 2333445557899999999999864
No 261
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.28 E-value=9e-11 Score=82.21 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~ 25 (119)
++++++|.+|+||||++++|++..
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCC
Confidence 689999999999999999999864
No 262
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.28 E-value=9.1e-11 Score=91.43 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=57.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCC---------------CCCceeeeeeeEEEEC---C--eeEEEEeCCcccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAAS---------------YEFTTLTCIPGVIEYK---G--ANIQLLDLPGIIEGA 62 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~---------------~~~~t~~~~~~~~~~~---~--~~~~~~DtpG~~~~~ 62 (119)
.++++|..++|||||+++|......++. ..+.|.......+.+. + ..+++|||||..+.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF- 83 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF- 83 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH-
Confidence 6899999999999999999864321111 1234444433334442 2 57899999997543
Q ss_pred cccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 63 AQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 63 ~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
...+.++++.||++++|+|+++.
T Consensus 84 ------~~~v~~~l~~aD~aILVvDat~g 106 (595)
T TIGR01393 84 ------SYEVSRSLAACEGALLLVDAAQG 106 (595)
T ss_pred ------HHHHHHHHHhCCEEEEEecCCCC
Confidence 33455678899999999999985
No 263
>KOG0087|consensus
Probab=99.27 E-value=5.1e-11 Score=81.01 Aligned_cols=98 Identities=20% Similarity=0.153 Sum_probs=66.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
+||+++|.+++|||-|+.+++.......+.+.--++.....+.+++ .+.++|||.|..+. ......+++.+
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERy-------rAitSaYYrgA 87 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERY-------RAITSAYYRGA 87 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhh-------ccccchhhccc
Confidence 5899999999999999999997765433322112223333344555 45689999995332 12244688999
Q ss_pred CEEEEEEeCCCC--chhHHHHHHHHHHcC
Q psy6249 80 DLVLMMLDATKQ--DVQRGLLEKELESVG 106 (119)
Q Consensus 80 d~il~Vvd~~~~--~~~~~~~~~~l~~~~ 106 (119)
.+.++|.|.+.. .+....+..||+.+-
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdha 116 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHA 116 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcC
Confidence 999999999875 445566666665543
No 264
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.26 E-value=3.2e-11 Score=88.97 Aligned_cols=101 Identities=21% Similarity=0.213 Sum_probs=54.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc-cCC----CCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHH--
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE-AAS----YEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIA-- 74 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~-~~~----~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~-- 74 (119)
+.|+++|.+|+|||||||+|.|-..+ .+. ...+|..+..... -+..++.+||.||+....... ..++.
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~----~~Yl~~~ 110 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPP----EEYLKEV 110 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--H----HHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCH----HHHHHHc
Confidence 57999999999999999999874331 111 1123333333222 123579999999986543322 33444
Q ss_pred HhcCCCEEEEEEeCCCCchhHHHHHHHHHHcCCc
Q psy6249 75 VARTADLVLMMLDATKQDVQRGLLEKELESVGIR 108 (119)
Q Consensus 75 ~~~~~d~il~Vvd~~~~~~~~~~~~~~l~~~~~~ 108 (119)
.+...|.+|.|.+..-...+. .+..++..++++
T Consensus 111 ~~~~yD~fiii~s~rf~~ndv-~La~~i~~~gK~ 143 (376)
T PF05049_consen 111 KFYRYDFFIIISSERFTENDV-QLAKEIQRMGKK 143 (376)
T ss_dssp TGGG-SEEEEEESSS--HHHH-HHHHHHHHTT-E
T ss_pred cccccCEEEEEeCCCCchhhH-HHHHHHHHcCCc
Confidence 457899888877765443333 233445555544
No 265
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.25 E-value=1.4e-10 Score=77.40 Aligned_cols=86 Identities=17% Similarity=0.139 Sum_probs=64.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCc-cc------CCCC---CceeeeeeeEEEECC-eeEEEEeCCcccccccccchHH
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQS-EA------ASYE---FTTLTCIPGVIEYKG-ANIQLLDLPGIIEGAAQGKGRG 69 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~-~~------~~~~---~~t~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~ 69 (119)
+.||+++|+.++||||++.++..... .+ ..+. .+|+....|.+.+.+ ..+.++||||..+. .
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF-------~ 82 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF-------K 82 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH-------H
Confidence 35899999999999999999986553 11 1122 377788888888876 89999999995442 2
Q ss_pred HHHHHHhcCCCEEEEEEeCCCCch
Q psy6249 70 RQVIAVARTADLVLMMLDATKQDV 93 (119)
Q Consensus 70 ~~~~~~~~~~d~il~Vvd~~~~~~ 93 (119)
..+.-..++++++++++|++.+..
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~ 106 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPIT 106 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcc
Confidence 223346789999999999998733
No 266
>KOG0086|consensus
Probab=99.24 E-value=1.3e-10 Score=75.80 Aligned_cols=92 Identities=21% Similarity=0.203 Sum_probs=65.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeee--EEEECC--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPG--VIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
+|++++|+.|+|||.|+..+...+..... ..|+....+ .+.+++ .++++|||.|..+ ++.-...+++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDds--sHTiGveFgSrIinVGgK~vKLQIWDTAGQEr-------FRSVtRsYYR 80 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDS--SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQER-------FRSVTRSYYR 80 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccc--cceeeeeecceeeeecCcEEEEEEeecccHHH-------HHHHHHHHhc
Confidence 58999999999999999999866653322 233333333 344444 4688999999433 2334566889
Q ss_pred CCCEEEEEEeCCCCchhHHHHHHHHH
Q psy6249 78 TADLVLMMLDATKQDVQRGLLEKELE 103 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~~~~~~~~~~l~ 103 (119)
.|-+.++|.|+++. +.++.+..+|.
T Consensus 81 GAAGAlLVYD~Tsr-dsfnaLtnWL~ 105 (214)
T KOG0086|consen 81 GAAGALLVYDITSR-DSFNALTNWLT 105 (214)
T ss_pred cccceEEEEeccch-hhHHHHHHHHH
Confidence 99999999999986 56677777664
No 267
>KOG0079|consensus
Probab=99.23 E-value=1.1e-10 Score=75.83 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=61.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCcee--eeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTL--TCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~--~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+.+|+|.||+|||+|+-++......- +| .+|+ +.....+.++| ..+.+|||+|... ++.....+.+.
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs~-sY-itTiGvDfkirTv~i~G~~VkLqIwDtAGqEr-------Frtitstyyrg 80 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFSG-SY-ITTIGVDFKIRTVDINGDRVKLQIWDTAGQER-------FRTITSTYYRG 80 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhccccc-ce-EEEeeeeEEEEEeecCCcEEEEEEeecccHHH-------HHHHHHHHccC
Confidence 56799999999999999987653321 22 2333 33334455554 5678999999322 12234457799
Q ss_pred CCEEEEEEeCCCCchhHHHHHHHHHHc
Q psy6249 79 ADLVLMMLDATKQDVQRGLLEKELESV 105 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~~~l~~~ 105 (119)
.+++++|.|.++. +.+.....+|+..
T Consensus 81 thgv~vVYDVTn~-ESF~Nv~rWLeei 106 (198)
T KOG0079|consen 81 THGVIVVYDVTNG-ESFNNVKRWLEEI 106 (198)
T ss_pred CceEEEEEECcch-hhhHhHHHHHHHH
Confidence 9999999999997 5555555555443
No 268
>KOG0093|consensus
Probab=99.23 E-value=2.9e-10 Score=73.71 Aligned_cols=109 Identities=15% Similarity=0.095 Sum_probs=70.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeE-EEE-CCeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGV-IEY-KGANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~-~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
|.|+.++|.+.+|||||+-+..+......-+...-+...... +.. ....+++|||.|... ++..+-.++++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr-------yrtiTTayyRg 93 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER-------YRTITTAYYRG 93 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchh-------hhHHHHHHhhc
Confidence 579999999999999999998866543322211111111111 111 236789999999432 33445568899
Q ss_pred CCEEEEEEeCCCCchhHHHHHHHHHHcCCcccCCCCcee
Q psy6249 79 ADLVLMMLDATKQDVQRGLLEKELESVGIRLNKKKPNIY 117 (119)
Q Consensus 79 ~d~il~Vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 117 (119)
+++++++.|.++. +.++.+..+..+..-.-+.+-+.|+
T Consensus 94 amgfiLmyDitNe-eSf~svqdw~tqIktysw~naqvil 131 (193)
T KOG0093|consen 94 AMGFILMYDITNE-ESFNSVQDWITQIKTYSWDNAQVIL 131 (193)
T ss_pred cceEEEEEecCCH-HHHHHHHHHHHHheeeeccCceEEE
Confidence 9999999999986 6777777776655544444444443
No 269
>KOG1424|consensus
Probab=99.23 E-value=8.7e-12 Score=93.98 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=50.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 63 (119)
++|++||.|||||||+||+|.|.+. .++..|+.|++.+.-.+ ...+.+-|+||++....
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l---s~~v~LCDCPGLVfPSf 374 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL---SPSVCLCDCPGLVFPSF 374 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc---CCCceecCCCCccccCC
Confidence 5899999999999999999999876 78899999987766665 35778999999976543
No 270
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.22 E-value=2.1e-10 Score=79.59 Aligned_cols=90 Identities=21% Similarity=0.272 Sum_probs=57.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc--cCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE--AASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
..|+++|++|+|||||+|.|.+.... .....++ .......+.++.++||||.. ...+..++.+
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-----i~i~~~~~~~i~~vDtPg~~----------~~~l~~ak~a 104 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-----ITVVTGKKRRLTFIECPNDI----------NAMIDIAKVA 104 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-----EEEEecCCceEEEEeCCchH----------HHHHHHHHhc
Confidence 36899999999999999999864221 1111111 11223357789999999843 2345567889
Q ss_pred CEEEEEEeCCCCch-hHHHHHHHHHHcC
Q psy6249 80 DLVLMMLDATKQDV-QRGLLEKELESVG 106 (119)
Q Consensus 80 d~il~Vvd~~~~~~-~~~~~~~~l~~~~ 106 (119)
|++++|+|++.... +-..+...+...+
T Consensus 105 DvVllviDa~~~~~~~~~~i~~~l~~~g 132 (225)
T cd01882 105 DLVLLLIDASFGFEMETFEFLNILQVHG 132 (225)
T ss_pred CEEEEEEecCcCCCHHHHHHHHHHHHcC
Confidence 99999999986522 2233444444433
No 271
>PRK09866 hypothetical protein; Provisional
Probab=99.22 E-value=3.9e-10 Score=87.83 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=36.9
Q ss_pred eeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC-chhHHHHHHHHHHcC
Q psy6249 48 ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ-DVQRGLLEKELESVG 106 (119)
Q Consensus 48 ~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~~ 106 (119)
.++.++||||+...... .+.....+.+..+|+|+||+|++.. ...-..+.+.+...+
T Consensus 230 ~QIIFVDTPGIhk~~~~--~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~ 287 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP--HLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVG 287 (741)
T ss_pred CCEEEEECCCCCCccch--HHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcC
Confidence 46789999999764322 2333444578999999999999874 222234445554443
No 272
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.22 E-value=1.3e-10 Score=86.99 Aligned_cols=83 Identities=13% Similarity=0.068 Sum_probs=54.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc---CCCCCceeeeeeeEE--------------EE------------CCeeEEE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA---ASYEFTTLTCIPGVI--------------EY------------KGANIQL 52 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~---~~~~~~t~~~~~~~~--------------~~------------~~~~~~~ 52 (119)
.+|+++|.+++|||||+++|++..... ....+.|.......+ .. .+..+++
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 84 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF 84 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 579999999999999999998643211 001122222111110 00 1467999
Q ss_pred EeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 53 LDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 53 ~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
|||||.. .+...+......+|++++|+|+++.
T Consensus 85 iDtPGh~-------~f~~~~~~g~~~aD~aIlVVDa~~g 116 (406)
T TIGR03680 85 VDAPGHE-------TLMATMLSGAALMDGALLVIAANEP 116 (406)
T ss_pred EECCCHH-------HHHHHHHHHHHHCCEEEEEEECCCC
Confidence 9999953 2344566677889999999999974
No 273
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.20 E-value=3.1e-10 Score=88.54 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=57.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccC---------------CCCCceeeeeeeEEEEC-----CeeEEEEeCCcccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAA---------------SYEFTTLTCIPGVIEYK-----GANIQLLDLPGIIEGA 62 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~---------------~~~~~t~~~~~~~~~~~-----~~~~~~~DtpG~~~~~ 62 (119)
.++++|..++|||||+.+|......+. ...+.|.......+.+. +..+++|||||..+.
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF- 87 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF- 87 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH-
Confidence 789999999999999999975322111 01233444433344443 467899999997553
Q ss_pred cccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 63 AQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 63 ~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
...+.++++.||++++|+|+++.
T Consensus 88 ------~~~v~~sl~~aD~aILVVDas~g 110 (600)
T PRK05433 88 ------SYEVSRSLAACEGALLVVDASQG 110 (600)
T ss_pred ------HHHHHHHHHHCCEEEEEEECCCC
Confidence 33455678899999999999986
No 274
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.20 E-value=3.1e-10 Score=85.90 Aligned_cols=99 Identities=17% Similarity=0.103 Sum_probs=68.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc-------------------------------CCCCCceeeeeeeEEEECCeeE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA-------------------------------ASYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 50 (119)
++|+++|..++|||||+.+|+.....+ ....+.|.+.....+.+++..+
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i 87 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYF 87 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEE
Confidence 479999999999999999886421100 0123556666666677788899
Q ss_pred EEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCCc--------hhHHHHHHHHHHcCC
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQD--------VQRGLLEKELESVGI 107 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~~--------~~~~~~~~~l~~~~~ 107 (119)
+++||||..+ +.......+..+|++++|+|++... .+.......+..++.
T Consensus 88 ~lIDtPGh~~-------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi 145 (446)
T PTZ00141 88 TIIDAPGHRD-------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGV 145 (446)
T ss_pred EEEECCChHH-------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCC
Confidence 9999999533 3445566778999999999998752 344444445555554
No 275
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.18 E-value=6.6e-10 Score=77.17 Aligned_cols=82 Identities=17% Similarity=0.130 Sum_probs=51.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCC--------------CCcee------------------------eeeeeEEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASY--------------EFTTL------------------------TCIPGVIE 44 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~--------------~~~t~------------------------~~~~~~~~ 44 (119)
+|+++|..++|||||+++++......+.. .+.|. ......++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998533211100 01110 00012234
Q ss_pred ECCeeEEEEeCCcccccccccchHHHHHHHHh--cCCCEEEEEEeCCCC
Q psy6249 45 YKGANIQLLDLPGIIEGAAQGKGRGRQVIAVA--RTADLVLMMLDATKQ 91 (119)
Q Consensus 45 ~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~il~Vvd~~~~ 91 (119)
..+..++++||||..+ +.....+.+ ..+|++++|+|+...
T Consensus 81 ~~~~~i~liDtpG~~~-------~~~~~~~~~~~~~~D~~llVvda~~g 122 (224)
T cd04165 81 KSSKLVTFIDLAGHER-------YLKTTLFGLTGYAPDYAMLVVAANAG 122 (224)
T ss_pred eCCcEEEEEECCCcHH-------HHHHHHHhhcccCCCEEEEEEECCCC
Confidence 4577899999999532 233444444 378999999999865
No 276
>PRK13796 GTPase YqeH; Provisional
Probab=99.17 E-value=4.7e-11 Score=88.25 Aligned_cols=56 Identities=25% Similarity=0.285 Sum_probs=42.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC------cccCCCCCceeeeeeeEEEECCeeEEEEeCCccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ------SEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEG 61 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~ 61 (119)
++.++|.+|||||||||+|.+.. ..++..|++|.......+ + ....++||||+...
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~-~~~~l~DTPGi~~~ 223 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--D-DGSFLYDTPGIIHR 223 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--C-CCcEEEECCCcccc
Confidence 68999999999999999998432 246788999987654433 2 23589999999643
No 277
>KOG0072|consensus
Probab=99.16 E-value=4.6e-11 Score=77.11 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=62.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
++++.++|..|+||+|++.++.-.+.. ..-+|.+.+...+++++..+++||..|... ++.-|.+++.+.|
T Consensus 18 e~rililgldGaGkttIlyrlqvgevv---ttkPtigfnve~v~yKNLk~~vwdLggqtS-------irPyWRcYy~dt~ 87 (182)
T KOG0072|consen 18 EMRILILGLDGAGKTTILYRLQVGEVV---TTKPTIGFNVETVPYKNLKFQVWDLGGQTS-------IRPYWRCYYADTD 87 (182)
T ss_pred ceEEEEeeccCCCeeEEEEEcccCccc---ccCCCCCcCccccccccccceeeEccCccc-------ccHHHHHHhcccc
Confidence 478999999999999999988644321 112345666777888889999999998433 3445667889999
Q ss_pred EEEEEEeCCCC
Q psy6249 81 LVLMMLDATKQ 91 (119)
Q Consensus 81 ~il~Vvd~~~~ 91 (119)
+++||+|++|.
T Consensus 88 avIyVVDssd~ 98 (182)
T KOG0072|consen 88 AVIYVVDSSDR 98 (182)
T ss_pred eEEEEEeccch
Confidence 99999999986
No 278
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.15 E-value=1.5e-10 Score=75.71 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=39.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGI 58 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~ 58 (119)
.+++++|.+|+||||++|+|.+... .+++.+++|...+ .+.. +..+.+|||||+
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~~~DtpGi 156 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ--LVKI-TSKIYLLDTPGV 156 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeE--EEEc-CCCEEEEECcCC
Confidence 4789999999999999999997554 4555666654432 2222 347899999995
No 279
>PRK12288 GTPase RsgA; Reviewed
Probab=99.14 E-value=9.9e-11 Score=85.98 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=39.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-ccCCC-------CCceeeeeeeEEEECCeeEEEEeCCccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS-EAASY-------EFTTLTCIPGVIEYKGANIQLLDLPGIIEG 61 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~-~~~~~-------~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~ 61 (119)
.++|+|.||||||||+|+|.+... .+++. .+||+..+...+..++ .++||||+-+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence 478999999999999999997653 33333 2456555444443222 59999999654
No 280
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.13 E-value=3.8e-10 Score=89.70 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=57.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc----------CC------CCCceeeeeee----EEEECCeeEEEEeCCccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA----------AS------YEFTTLTCIPG----VIEYKGANIQLLDLPGIIEG 61 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~----------~~------~~~~t~~~~~~----~~~~~~~~~~~~DtpG~~~~ 61 (119)
.+|+++|..++|||||+++|......+ .. ..+.|...... .+.+++..+.+|||||+.+.
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f 99 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDF 99 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcccc
Confidence 379999999999999999996421110 01 12233332221 13445788999999997653
Q ss_pred ccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 62 AAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.......++.+|++++|+|+.+.
T Consensus 100 -------~~~~~~al~~aD~~llVvda~~g 122 (720)
T TIGR00490 100 -------GGDVTRAMRAVDGAIVVVCAVEG 122 (720)
T ss_pred -------HHHHHHHHHhcCEEEEEEecCCC
Confidence 23456678999999999999874
No 281
>PRK12740 elongation factor G; Reviewed
Probab=99.12 E-value=8e-10 Score=87.22 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=57.3
Q ss_pred EcCCCCCHHHHHHHHhCCCcccC------------C------CCCceeeeeeeEEEECCeeEEEEeCCcccccccccchH
Q psy6249 7 LDLKCSHESTLLSTLTHTQSEAA------------S------YEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGR 68 (119)
Q Consensus 7 iG~~~~GKStlin~l~~~~~~~~------------~------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~ 68 (119)
+|.+|+|||||+++|......+. . ..+.|.......+.+++..+.+|||||..+ +
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------~ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------F 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH-------H
Confidence 69999999999999953322110 0 134555666667888899999999999643 2
Q ss_pred HHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 69 GRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 69 ~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
...+...++.+|++++|+|++..
T Consensus 74 ~~~~~~~l~~aD~vllvvd~~~~ 96 (668)
T PRK12740 74 TGEVERALRVLDGAVVVVCAVGG 96 (668)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCC
Confidence 33455677899999999999875
No 282
>PRK12289 GTPase RsgA; Reviewed
Probab=99.12 E-value=1e-10 Score=86.06 Aligned_cols=57 Identities=19% Similarity=0.063 Sum_probs=38.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCC-------ceeeeeeeEEEECCeeEEEEeCCcccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS-EAASYEF-------TTLTCIPGVIEYKGANIQLLDLPGIIEGA 62 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~-------~t~~~~~~~~~~~~~~~~~~DtpG~~~~~ 62 (119)
.++|+|+||||||||+|+|.+... .++..+. ||.....-.+.- + ..++||||+....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-g--~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-G--GLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-C--cEEEeCCCccccc
Confidence 479999999999999999996543 4444333 665553333321 2 2799999986543
No 283
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.12 E-value=6.8e-10 Score=82.83 Aligned_cols=107 Identities=15% Similarity=0.097 Sum_probs=67.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCC----Ccc------------cCCCCC---ceeeeee---eEEEEC-----CeeEEEEe
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHT----QSE------------AASYEF---TTLTCIP---GVIEYK-----GANIQLLD 54 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~----~~~------------~~~~~~---~t~~~~~---~~~~~~-----~~~~~~~D 54 (119)
.-|+++|+-++|||||+|++++. +.. +++.++ +|.+|.. ..++.. ...+.++|
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlID 97 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVD 97 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEE
Confidence 35899999999999999999987 332 334556 6666654 333322 25789999
Q ss_pred CCcccccccccchHHHH----------------------HHHHhc-CCCEEEEEE-eCC-------CCchhHHHHHHHHH
Q psy6249 55 LPGIIEGAAQGKGRGRQ----------------------VIAVAR-TADLVLMML-DAT-------KQDVQRGLLEKELE 103 (119)
Q Consensus 55 tpG~~~~~~~~~~~~~~----------------------~~~~~~-~~d~il~Vv-d~~-------~~~~~~~~~~~~l~ 103 (119)
|+|+......+...... +..-+. .+|..++|. |++ +..+.-+.+.++|.
T Consensus 98 cvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk 177 (492)
T TIGR02836 98 CVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELK 177 (492)
T ss_pred CCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHH
Confidence 99995543222111111 334555 899999999 886 22222344556666
Q ss_pred HcCCc
Q psy6249 104 SVGIR 108 (119)
Q Consensus 104 ~~~~~ 108 (119)
..++|
T Consensus 178 ~~~kP 182 (492)
T TIGR02836 178 ELNKP 182 (492)
T ss_pred hcCCC
Confidence 66655
No 284
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.12 E-value=8.6e-10 Score=82.72 Aligned_cols=83 Identities=13% Similarity=0.087 Sum_probs=55.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc---cCCCCCceeeeeeeEEEE---------------------C-----CeeEEE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE---AASYEFTTLTCIPGVIEY---------------------K-----GANIQL 52 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~---~~~~~~~t~~~~~~~~~~---------------------~-----~~~~~~ 52 (119)
++|+++|..++|||||+.+|++.... .....+.|.........+ + ...+.+
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 89 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSF 89 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 57999999999999999999764211 111233444332211111 0 257899
Q ss_pred EeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 53 LDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 53 ~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
|||||.. .+...++.....+|++++|+|++++
T Consensus 90 iDtPG~~-------~f~~~~~~~~~~~D~~llVVDa~~~ 121 (411)
T PRK04000 90 VDAPGHE-------TLMATMLSGAALMDGAILVIAANEP 121 (411)
T ss_pred EECCCHH-------HHHHHHHHHHhhCCEEEEEEECCCC
Confidence 9999942 2344566667789999999999975
No 285
>PTZ00416 elongation factor 2; Provisional
Probab=99.10 E-value=1.1e-09 Score=88.28 Aligned_cols=95 Identities=22% Similarity=0.208 Sum_probs=62.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCC----------------CCCceeeeeeeEEEEC----------CeeEEEEeCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAAS----------------YEFTTLTCIPGVIEYK----------GANIQLLDLP 56 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~----------~~~~~~~Dtp 56 (119)
.|+++|..++|||||.++|......+.. ..+.|.......+.+. +..+.++|||
T Consensus 21 ni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtP 100 (836)
T PTZ00416 21 NMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSP 100 (836)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCC
Confidence 7999999999999999999854322110 1122333222233443 5679999999
Q ss_pred cccccccccchHHHHHHHHhcCCCEEEEEEeCCCC-chhHHHHHHHHHH
Q psy6249 57 GIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ-DVQRGLLEKELES 104 (119)
Q Consensus 57 G~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~ 104 (119)
|+.+. .......++.+|++++|+|+... ..+.+.+...+..
T Consensus 101 G~~~f-------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~ 142 (836)
T PTZ00416 101 GHVDF-------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ 142 (836)
T ss_pred CHHhH-------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH
Confidence 97552 34456678999999999999985 3344444444433
No 286
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.08 E-value=9e-11 Score=77.56 Aligned_cols=57 Identities=18% Similarity=0.097 Sum_probs=34.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-c---cCCC----CCceeeeeeeEEEECCeeEEEEeCCccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-E---AASY----EFTTLTCIPGVIEYKGANIQLLDLPGIIEG 61 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~---~~~~----~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~ 61 (119)
..++|+|++|||||||+|+|.+... . ++.. .+||+.... +.. .....++||||+-+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l--~~l-~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHREL--FPL-PDGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEE--EEE-TTSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeE--Eec-CCCcEEEECCCCCcc
Confidence 3689999999999999999997632 2 2222 344444333 333 235589999998554
No 287
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.06 E-value=2.9e-10 Score=79.91 Aligned_cols=56 Identities=18% Similarity=0.059 Sum_probs=39.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCC-------CCCceeeeeeeEEEECCeeEEEEeCCccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAAS-------YEFTTLTCIPGVIEYKGANIQLLDLPGIIEG 61 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~-------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~ 61 (119)
..++++|.+|||||||+|+|.+... .+++ ..+||+..+.-.+ .+ -.++||||+...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 3689999999999999999986543 2222 2346665554444 22 389999999664
No 288
>KOG0091|consensus
Probab=99.05 E-value=1e-09 Score=72.31 Aligned_cols=94 Identities=22% Similarity=0.157 Sum_probs=60.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC---CeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK---GANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
++..+||.+-+|||||+..++..+.+--+-|..-++.-...++.. ..++++|||+|... .+..+-.++++
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqer-------frsitksyyrn 81 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQER-------FRSITKSYYRN 81 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHH-------HHHHHHHHhhc
Confidence 477899999999999999999766532111111111111112222 35788999999433 34456678899
Q ss_pred CCEEEEEEeCCCC--chhHHHHHHHH
Q psy6249 79 ADLVLMMLDATKQ--DVQRGLLEKEL 102 (119)
Q Consensus 79 ~d~il~Vvd~~~~--~~~~~~~~~~l 102 (119)
+-+++.|.|.++. .++.+.+.+|.
T Consensus 82 svgvllvyditnr~sfehv~~w~~ea 107 (213)
T KOG0091|consen 82 SVGVLLVYDITNRESFEHVENWVKEA 107 (213)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHH
Confidence 9999999999997 33444444443
No 289
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.05 E-value=2.9e-09 Score=76.29 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=48.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCC--CC--------CceeeeeeeEEEECC--eeEEEEeCCccccccccc---c
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAAS--YE--------FTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQG---K 66 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~--~~--------~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~---~ 66 (119)
++|.++|.+|+|||||+|.|.+....... .+ ..........+.-++ .+++++||||+.+..... .
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 68999999999999999999976652221 11 111222222233233 468899999986543221 1
Q ss_pred h----HHHHHHHHh-------------cCCCEEEEEEeCCCC
Q psy6249 67 G----RGRQVIAVA-------------RTADLVLMMLDATKQ 91 (119)
Q Consensus 67 ~----~~~~~~~~~-------------~~~d~il~Vvd~~~~ 91 (119)
. +..++..++ ...|++||+++++..
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~ 126 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH 126 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc
Confidence 1 111111111 356899999998753
No 290
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.05 E-value=1.9e-09 Score=87.02 Aligned_cols=97 Identities=22% Similarity=0.188 Sum_probs=62.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCC----------------CCCceeeeeeeEEEEC----------------Cee
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAAS----------------YEFTTLTCIPGVIEYK----------------GAN 49 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~----------------~~~ 49 (119)
.+|+++|..++|||||+.+|......+.. ..+.|.......+.+. +..
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYL 99 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceE
Confidence 37999999999999999999754321111 1223333333334332 567
Q ss_pred EEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCCc-hhHHHHHHHHHHc
Q psy6249 50 IQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQD-VQRGLLEKELESV 105 (119)
Q Consensus 50 ~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~~-~~~~~~~~~l~~~ 105 (119)
++++||||+.+. ..+....++.+|++++|+|+.... .+...+...+...
T Consensus 100 inliDtPGh~dF-------~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~ 149 (843)
T PLN00116 100 INLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE 149 (843)
T ss_pred EEEECCCCHHHH-------HHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC
Confidence 899999997543 345566779999999999999762 2334444444333
No 291
>KOG2484|consensus
Probab=98.98 E-value=4.7e-10 Score=82.59 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=56.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
.+++++|.||+||||+||+|...+. .+++.|+.|...+.-.+ +..+.++|.||++-......+ .-.+++|.
T Consensus 253 IrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L---dk~i~llDsPgiv~~~~~~~~-----~~~Lrn~~ 324 (435)
T KOG2484|consen 253 IRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL---DKKIRLLDSPGIVPPSIDEKD-----ALALRNCI 324 (435)
T ss_pred eEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec---cCCceeccCCceeecCCCccc-----hhhhhccc
Confidence 5799999999999999999997776 77777777765443332 678999999999776554422 12345565
Q ss_pred EEEEEEeCC
Q psy6249 81 LVLMMLDAT 89 (119)
Q Consensus 81 ~il~Vvd~~ 89 (119)
-+--+.|..
T Consensus 325 ~i~~~~dp~ 333 (435)
T KOG2484|consen 325 PIGKVADPV 333 (435)
T ss_pred ccccccCcc
Confidence 555455543
No 292
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.97 E-value=7.5e-09 Score=78.44 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=59.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc-------------------------------CCCCCceeeeeeeEEEECCeeE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA-------------------------------ASYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 50 (119)
+.|+++|..++|||||+-+|+.....+ ....+.|.+.....+..++..+
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i 87 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYC 87 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEE
Confidence 469999999999999998885321100 0123455555555666778899
Q ss_pred EEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+++|+||..+ +.......+..+|++++|+|+++.
T Consensus 88 ~liDtPGh~d-------f~~~~~~g~~~aD~aIlVVda~~G 121 (447)
T PLN00043 88 TVIDAPGHRD-------FIKNMITGTSQADCAVLIIDSTTG 121 (447)
T ss_pred EEEECCCHHH-------HHHHHHhhhhhccEEEEEEEcccC
Confidence 9999999533 344556677899999999999874
No 293
>PRK00098 GTPase RsgA; Reviewed
Probab=98.96 E-value=1.2e-09 Score=78.73 Aligned_cols=55 Identities=22% Similarity=0.180 Sum_probs=37.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-ccCCCC-------CceeeeeeeEEEECCeeEEEEeCCcccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS-EAASYE-------FTTLTCIPGVIEYKGANIQLLDLPGIIE 60 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~-~~~~~~-------~~t~~~~~~~~~~~~~~~~~~DtpG~~~ 60 (119)
.++++|++|||||||+|+|.+... .++..+ ++|.......+ .+ ...++||||+.+
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~--~~-~~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL--PG-GGLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc--CC-CcEEEECCCcCc
Confidence 689999999999999999987653 222222 35544433333 21 248999999864
No 294
>KOG2485|consensus
Probab=98.96 E-value=2.3e-09 Score=76.89 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=48.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCC------cccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQ------SEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
+.+.++|-||+|||||+|++.... ..++..|+.|+......-..+...++++||||+......+
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCC
Confidence 578999999999999999985322 2567788888766554544556789999999997765443
No 295
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.96 E-value=5.9e-09 Score=83.14 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=56.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCC----------------CCCceeeeeeeEEEE----CCeeEEEEeCCcccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAAS----------------YEFTTLTCIPGVIEY----KGANIQLLDLPGIIEGA 62 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~----------------~~~~t~~~~~~~~~~----~~~~~~~~DtpG~~~~~ 62 (119)
.|+++|..++|||||+.+|......+.. ..+.|+......+.+ ++..+.++||||+.+.
T Consensus 22 ni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df- 100 (731)
T PRK07560 22 NIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF- 100 (731)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh-
Confidence 6999999999999999999743321111 012233333333333 3677899999997653
Q ss_pred cccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 63 AQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 63 ~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.....+.++.+|++++|+|+...
T Consensus 101 ------~~~~~~~l~~~D~avlVvda~~g 123 (731)
T PRK07560 101 ------GGDVTRAMRAVDGAIVVVDAVEG 123 (731)
T ss_pred ------HHHHHHHHHhcCEEEEEEECCCC
Confidence 34556678999999999999875
No 296
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.94 E-value=1.2e-09 Score=78.26 Aligned_cols=56 Identities=21% Similarity=0.131 Sum_probs=39.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc----ccCC----CCCceeeeeeeEEEECCeeEEEEeCCccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS----EAAS----YEFTTLTCIPGVIEYKGANIQLLDLPGIIEG 61 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~----~~~~----~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~ 61 (119)
..+++|.+|||||||+|+|..... +++. -.+||+....-.+..+| .++||||+-+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 578999999999999999986332 2332 24566665555554455 78999998554
No 297
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.9e-08 Score=79.54 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=73.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCC------------------CCCceeeeeeeEEEECC-eeEEEEeCCccccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAAS------------------YEFTTLTCIPGVIEYKG-ANIQLLDLPGIIEGAA 63 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~------------------~~~~t~~~~~~~~~~~~-~~~~~~DtpG~~~~~~ 63 (119)
.|+++|+-.+|||||.-+|......++. ..+-|+......+.+.+ ..+++|||||.+++
T Consensus 12 NigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDF-- 89 (697)
T COG0480 12 NIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDF-- 89 (697)
T ss_pred EEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcccc--
Confidence 6899999999999999999743332211 13455555555677886 99999999998876
Q ss_pred ccchHHHHHHHHhcCCCEEEEEEeCCCC-chhHHHHHHHHHHcCCc
Q psy6249 64 QGKGRGRQVIAVARTADLVLMMLDATKQ-DVQRGLLEKELESVGIR 108 (119)
Q Consensus 64 ~~~~~~~~~~~~~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~~~~ 108 (119)
.....+.++.+|+.+.|+|+... ..+.+.++.++..++.+
T Consensus 90 -----t~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp 130 (697)
T COG0480 90 -----TIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVP 130 (697)
T ss_pred -----HHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCC
Confidence 34566788999999999999876 44666666666665543
No 298
>KOG2423|consensus
Probab=98.91 E-value=1.6e-09 Score=80.16 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=43.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 63 (119)
..|+|||.||+||||+||+|...+. .+++.|+.|.-.+.-.+ -..+.+||+||++-...
T Consensus 308 ISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 308 ISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYPSS 367 (572)
T ss_pred eeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCccCCCC
Confidence 4689999999999999999987765 56666666643332222 25788999999976543
No 299
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.89 E-value=8.3e-09 Score=65.27 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=51.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
|.+++++|..|+|||||+++|-|.... -.....+++++. ..+||||-.-....+ -...+-....+|
T Consensus 1 MKri~~vG~~gcGKTtL~q~L~G~~~l---------ykKTQAve~~d~--~~IDTPGEy~~~~~~---Y~aL~tt~~dad 66 (148)
T COG4917 1 MKRIAFVGQVGCGKTTLFQSLYGNDTL---------YKKTQAVEFNDK--GDIDTPGEYFEHPRW---YHALITTLQDAD 66 (148)
T ss_pred CceeEEecccccCchhHHHHhhcchhh---------hcccceeeccCc--cccCCchhhhhhhHH---HHHHHHHhhccc
Confidence 679999999999999999999987642 111233444332 259999965432211 112333557899
Q ss_pred EEEEEEeCCCC
Q psy6249 81 LVLMMLDATKQ 91 (119)
Q Consensus 81 ~il~Vvd~~~~ 91 (119)
.+++|-.+.++
T Consensus 67 vi~~v~~and~ 77 (148)
T COG4917 67 VIIYVHAANDP 77 (148)
T ss_pred eeeeeecccCc
Confidence 99999888654
No 300
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.85 E-value=5.2e-09 Score=75.13 Aligned_cols=56 Identities=23% Similarity=0.162 Sum_probs=36.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-ccCC-------CCCceeeeeeeEEEECCeeEEEEeCCccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS-EAAS-------YEFTTLTCIPGVIEYKGANIQLLDLPGIIEG 61 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~-~~~~-------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~ 61 (119)
.++++|++|||||||+|.|.+... .++. -.++|..... +...+ ...++||||+.+.
T Consensus 163 ~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~--~~~~~-~~~liDtPG~~~~ 226 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPLPG-GGLLIDTPGFREF 226 (287)
T ss_pred eEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE--EEcCC-CCEEEECCCCCcc
Confidence 689999999999999999987643 2221 1234444433 32321 2379999999553
No 301
>KOG0395|consensus
Probab=98.85 E-value=3.6e-08 Score=67.26 Aligned_cols=95 Identities=17% Similarity=0.126 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.+|+++|.+|+|||+|...+...... ..+.++.-+.....+.+++ ..+.++||+|..+. ...-..+++++
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f~-~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~-------~~~~~~~~~~~ 75 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGRFV-EDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEF-------SAMRDLYIRNG 75 (196)
T ss_pred eEEEEECCCCCCcchheeeecccccc-cccCCCccccceEEEEECCEEEEEEEEcCCCcccC-------hHHHHHhhccC
Confidence 68999999999999999888765542 2232222233333444444 46789999993322 22233578899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHHHc
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELESV 105 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~~~ 105 (119)
|+.+.|++.++. ..++.+....++.
T Consensus 76 ~gF~lVysitd~-~SF~~~~~l~~~I 100 (196)
T KOG0395|consen 76 DGFLLVYSITDR-SSFEEAKQLREQI 100 (196)
T ss_pred cEEEEEEECCCH-HHHHHHHHHHHHH
Confidence 999999999997 4444444444333
No 302
>KOG0097|consensus
Probab=98.83 E-value=8.4e-08 Score=62.08 Aligned_cols=81 Identities=25% Similarity=0.250 Sum_probs=55.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeee--EEEECC--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPG--VIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
++..++|.-|+|||.|+..++..+.- +..|+ |+....| .+++.| .++++|||.|..+ ++.-...+++
T Consensus 12 fkyiiigdmgvgkscllhqftekkfm-adcph-tigvefgtriievsgqkiklqiwdtagqer-------fravtrsyyr 82 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPH-TIGVEFGTRIIEVSGQKIKLQIWDTAGQER-------FRAVTRSYYR 82 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHh-hcCCc-ccceecceeEEEecCcEEEEEEeecccHHH-------HHHHHHHHhc
Confidence 47789999999999999999865542 22222 3333333 344444 5678999999432 2333556889
Q ss_pred CCCEEEEEEeCCCC
Q psy6249 78 TADLVLMMLDATKQ 91 (119)
Q Consensus 78 ~~d~il~Vvd~~~~ 91 (119)
.+-+.+.|.|.+..
T Consensus 83 gaagalmvyditrr 96 (215)
T KOG0097|consen 83 GAAGALMVYDITRR 96 (215)
T ss_pred cccceeEEEEehhh
Confidence 99999999999864
No 303
>KOG2486|consensus
Probab=98.82 E-value=5.8e-08 Score=68.99 Aligned_cols=104 Identities=14% Similarity=0.026 Sum_probs=63.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc--ccCC-CCCceeeeeeeEEEECCeeEEEEeCCcc-----ccccc-ccchHHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS--EAAS-YEFTTLTCIPGVIEYKGANIQLLDLPGI-----IEGAA-QGKGRGRQV 72 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~--~~~~-~~~~t~~~~~~~~~~~~~~~~~~DtpG~-----~~~~~-~~~~~~~~~ 72 (119)
+.+++.|.+|+|||||+|.++..+. ..+. .++.|...+... -+..++++|+||+ ....+ ++..+..++
T Consensus 137 pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 137 PELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred ceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee---ccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 5799999999999999999987654 2222 444443333222 2678999999994 32223 233455555
Q ss_pred HHHhcCCCEEEEEEeCCCCchhHH-HHHHHHHHcCCc
Q psy6249 73 IAVARTADLVLMMLDATKQDVQRG-LLEKELESVGIR 108 (119)
Q Consensus 73 ~~~~~~~d~il~Vvd~~~~~~~~~-~~~~~l~~~~~~ 108 (119)
+-.-++--.++..+|++.+....+ ...+++.+++.+
T Consensus 214 ~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP 250 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVP 250 (320)
T ss_pred HHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCC
Confidence 544445556788899987533222 223445555544
No 304
>KOG1954|consensus
Probab=98.80 E-value=3.3e-08 Score=72.83 Aligned_cols=89 Identities=20% Similarity=0.270 Sum_probs=57.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc---cCCCCCcee------eeeeeEEE-----EC---------------------
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE---AASYEFTTL------TCIPGVIE-----YK--------------------- 46 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~---~~~~~~~t~------~~~~~~~~-----~~--------------------- 46 (119)
+.|.++|..+.||||+|+.|+..... +++.|.+.. .+..+.+. .+
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 56899999999999999999865542 333322211 01111110 00
Q ss_pred -------CeeEEEEeCCcccccccccchHHHH----HHHHhcCCCEEEEEEeCCC
Q psy6249 47 -------GANIQLLDLPGIIEGAAQGKGRGRQ----VIAVARTADLVLMMLDATK 90 (119)
Q Consensus 47 -------~~~~~~~DtpG~~~~~~~~~~~~~~----~~~~~~~~d~il~Vvd~~~ 90 (119)
=..++++||||+.++......++.. .......||.|++++|+..
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hK 193 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHK 193 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhh
Confidence 1579999999998876654332322 2236688999999999964
No 305
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3.4e-08 Score=73.26 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=58.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC-------------------------------CCCCceeeeeeeEEEECCeeE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA-------------------------------SYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~ 50 (119)
++++++|...+|||||+-+|......+. ...+.|.+.....++.+...+
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~ 87 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNF 87 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceE
Confidence 4789999999999999988753322211 123455555555566677889
Q ss_pred EEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+++|+||. +.+......-..+||+.++||||++.
T Consensus 88 tIiDaPGH-------rdFvknmItGasqAD~aVLVV~a~~~ 121 (428)
T COG5256 88 TIIDAPGH-------RDFVKNMITGASQADVAVLVVDARDG 121 (428)
T ss_pred EEeeCCch-------HHHHHHhhcchhhccEEEEEEECCCC
Confidence 99999993 22233445566899999999999864
No 306
>KOG1547|consensus
Probab=98.78 E-value=5.2e-08 Score=68.19 Aligned_cols=89 Identities=25% Similarity=0.305 Sum_probs=52.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc-CC-------CCCce-eeeeeeEEEECCe--eEEEEeCCcccccccc---cch
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA-AS-------YEFTT-LTCIPGVIEYKGA--NIQLLDLPGIIEGAAQ---GKG 67 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~-~~-------~~~~t-~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~---~~~ 67 (119)
+.|.++|.+|.|||||+|.|...+..- +. .+.++ .......+.-++. +++++||||+.+.... |+-
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWeP 126 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEP 126 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHH
Confidence 579999999999999999998655411 11 11111 1112222333444 6789999999665322 211
Q ss_pred ----HHHH---HHH---------Hh--cCCCEEEEEEeCCC
Q psy6249 68 ----RGRQ---VIA---------VA--RTADLVLMMLDATK 90 (119)
Q Consensus 68 ----~~~~---~~~---------~~--~~~d~il~Vvd~~~ 90 (119)
+..+ +++ .+ ..+++++|.+.++.
T Consensus 127 I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG 167 (336)
T KOG1547|consen 127 IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG 167 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC
Confidence 1112 221 11 35789999999873
No 307
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.74 E-value=1.5e-07 Score=69.05 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=52.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC----CCCC----ceeee--eeeEEEECC--eeEEEEeCCcccccccc---cc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA----SYEF----TTLTC--IPGVIEYKG--ANIQLLDLPGIIEGAAQ---GK 66 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~----~~~~----~t~~~--~~~~~~~~~--~~~~~~DtpG~~~~~~~---~~ 66 (119)
++|.++|.+|.|||||+|.|.+...... .... +|... ....+.-++ .+++++||||+.+.... |.
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we 103 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWE 103 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHH
Confidence 5899999999999999999987633111 1111 22222 222222233 46889999999765322 21
Q ss_pred h----HHHHHHHHh--------------cCCCEEEEEEeCCC
Q psy6249 67 G----RGRQVIAVA--------------RTADLVLMMLDATK 90 (119)
Q Consensus 67 ~----~~~~~~~~~--------------~~~d~il~Vvd~~~ 90 (119)
- +..++.+++ ..+|++||.+.++.
T Consensus 104 ~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg 145 (373)
T COG5019 104 PIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG 145 (373)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC
Confidence 1 111222111 34789999999863
No 308
>KOG2655|consensus
Probab=98.73 E-value=2.1e-07 Score=68.44 Aligned_cols=90 Identities=21% Similarity=0.218 Sum_probs=53.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc-------CCCCCce--eeeeeeEEEECC--eeEEEEeCCcccccccc---cch
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA-------ASYEFTT--LTCIPGVIEYKG--ANIQLLDLPGIIEGAAQ---GKG 67 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~-------~~~~~~t--~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~---~~~ 67 (119)
+++.++|.+|.|||||+|.|+...... ...+..| +......+.-+| .+++++||||+.+.-.. |+-
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p 101 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP 101 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence 689999999999999999998653211 1111112 222222233334 46889999999665321 211
Q ss_pred ----HHHHHHHH-----------h--cCCCEEEEEEeCCCC
Q psy6249 68 ----RGRQVIAV-----------A--RTADLVLMMLDATKQ 91 (119)
Q Consensus 68 ----~~~~~~~~-----------~--~~~d~il~Vvd~~~~ 91 (119)
+..++.++ + ..+|++||.+..+..
T Consensus 102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh 142 (366)
T KOG2655|consen 102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH 142 (366)
T ss_pred hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC
Confidence 11222222 1 268899999998753
No 309
>PRK13768 GTPase; Provisional
Probab=98.72 E-value=2.7e-08 Score=70.27 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=30.2
Q ss_pred eeEEEEeCCcccccccccchHHHHHHHHhcC--CCEEEEEEeCCCC
Q psy6249 48 ANIQLLDLPGIIEGAAQGKGRGRQVIAVART--ADLVLMMLDATKQ 91 (119)
Q Consensus 48 ~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~--~d~il~Vvd~~~~ 91 (119)
..+.++|+||..+.... +.....+.+++.. ++++++|+|++..
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~ 141 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLA 141 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHh
Confidence 47899999997664321 3334455555544 8999999999764
No 310
>KOG3883|consensus
Probab=98.68 E-value=6.3e-07 Score=58.72 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=62.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceee-eeeeEEEEC---CeeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLT-CIPGVIEYK---GANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~-~~~~~~~~~---~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
.+|+++|.-++|||.++..|...+-.+...-.+|++ ...+.++-+ ...+.++||.|+-....+- -..++.
T Consensus 10 ~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eL------prhy~q 83 (198)
T KOG3883|consen 10 CKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQEL------PRHYFQ 83 (198)
T ss_pred eEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhh------hHhHhc
Confidence 489999999999999999998554433322233332 222233222 3678999999986542111 123567
Q ss_pred CCCEEEEEEeCCCCc--hhHHHHHHHHHH
Q psy6249 78 TADLVLMMLDATKQD--VQRGLLEKELES 104 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~--~~~~~~~~~l~~ 104 (119)
-+|+.++|.+..+++ ...+.++.+++.
T Consensus 84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk 112 (198)
T KOG3883|consen 84 FADAFVLVYSPMDPESFQRVELLKKEIDK 112 (198)
T ss_pred cCceEEEEecCCCHHHHHHHHHHHHHHhh
Confidence 899999999999972 233455566654
No 311
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.63 E-value=3.5e-07 Score=69.60 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=53.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc---CCCCCceeeeeeeEE---------------EE------------------
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA---ASYEFTTLTCIPGVI---------------EY------------------ 45 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~---~~~~~~t~~~~~~~~---------------~~------------------ 45 (119)
+.|+++|.-..|||||+.+|++..... .-..+-|.+.-.... .+
T Consensus 35 ~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (460)
T PTZ00327 35 INIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMT 114 (460)
T ss_pred EEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccccc
Confidence 479999999999999999999754411 001111111000000 00
Q ss_pred CCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 46 KGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 46 ~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
-...+.++|+||.. .+....+..+..+|++++|+|+...
T Consensus 115 ~~~~i~~IDtPGH~-------~fi~~m~~g~~~~D~alLVVda~~g 153 (460)
T PTZ00327 115 LKRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIAANES 153 (460)
T ss_pred ccceEeeeeCCCHH-------HHHHHHHHHHhhCCEEEEEEECCCC
Confidence 02468999999942 3445566677899999999999973
No 312
>KOG0081|consensus
Probab=98.60 E-value=2.6e-08 Score=65.54 Aligned_cols=96 Identities=16% Similarity=0.078 Sum_probs=57.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC-----------CeeEEEEeCCcccccccccchHHHH
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK-----------GANIQLLDLPGIIEGAAQGKGRGRQ 71 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~~DtpG~~~~~~~~~~~~~~ 71 (119)
|...+|.+|+||||++..-+..+....-....-++..+..+.++ ...+++|||+|.... +.-
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF-------RSL 83 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF-------RSL 83 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHH-------HHH
Confidence 45668999999999999888655421111001111122222232 256899999995332 223
Q ss_pred HHHHhcCCCEEEEEEeCCCCchhHHHHHHHHHHcC
Q psy6249 72 VIAVARTADLVLMMLDATKQDVQRGLLEKELESVG 106 (119)
Q Consensus 72 ~~~~~~~~d~il~Vvd~~~~~~~~~~~~~~l~~~~ 106 (119)
+-..++.|=+.++++|.++. ..+-.+++++.+..
T Consensus 84 TTAFfRDAMGFlLiFDlT~e-qSFLnvrnWlSQL~ 117 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSE-QSFLNVRNWLSQLQ 117 (219)
T ss_pred HHHHHHhhccceEEEeccch-HHHHHHHHHHHHHH
Confidence 44566888889999999985 33344555555443
No 313
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.60 E-value=2.4e-07 Score=63.17 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=35.9
Q ss_pred CeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCCchhHHHHHHHHHHc
Q psy6249 47 GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQDVQRGLLEKELESV 105 (119)
Q Consensus 47 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~~~~~~~~~~~l~~~ 105 (119)
+..+.++||||......+...-..++.+.. ..+-+++|++++...++++.+.+..+.+
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccChHHHHHHHHHhhcc
Confidence 357999999996543322211122344444 5789999999998777776655554444
No 314
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.6e-07 Score=69.31 Aligned_cols=83 Identities=19% Similarity=0.219 Sum_probs=57.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHh--CCCcc--------------cCC------CCCceeeeeeeEEEECCeeEEEEeCCccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT--HTQSE--------------AAS------YEFTTLTCIPGVIEYKGANIQLLDLPGII 59 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~--~~~~~--------------~~~------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~ 59 (119)
.+.+||-.|.+|||||-..|. |.... .|. ..+-++....-.+.|++..++++||||..
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 368999999999999998875 21110 111 12223334444577889999999999965
Q ss_pred ccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 60 EGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+. ...+.+.+.-+|..+.|+|+...
T Consensus 93 DF-------SEDTYRtLtAvDsAvMVIDaAKG 117 (528)
T COG4108 93 DF-------SEDTYRTLTAVDSAVMVIDAAKG 117 (528)
T ss_pred cc-------chhHHHHHHhhheeeEEEecccC
Confidence 43 33456667779999999999754
No 315
>KOG0088|consensus
Probab=98.57 E-value=4.9e-08 Score=64.23 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=56.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc---cCC--CCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE---AAS--YEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVA 76 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~---~~~--~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~ 76 (119)
+|++++|-.-+|||||+=+....+.. .+. ..+.+...+.+. ...++.+|||+|......-+ .-|+
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed---~ra~L~IWDTAGQErfHALG-------PIYY 83 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVED---CRADLHIWDTAGQERFHALG-------PIYY 83 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccccc---ceeeeeeeeccchHhhhccC-------ceEE
Confidence 68999999999999998776644431 110 112222222222 24578899999953321111 1267
Q ss_pred cCCCEEEEEEeCCCCchhHHHHHHHH
Q psy6249 77 RTADLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 77 ~~~d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
+.++++++|+|.+|. +.++.++.+.
T Consensus 84 RgSnGalLVyDITDr-dSFqKVKnWV 108 (218)
T KOG0088|consen 84 RGSNGALLVYDITDR-DSFQKVKNWV 108 (218)
T ss_pred eCCCceEEEEeccch-HHHHHHHHHH
Confidence 999999999999996 4555555554
No 316
>KOG3886|consensus
Probab=98.55 E-value=1.2e-07 Score=65.97 Aligned_cols=84 Identities=13% Similarity=0.121 Sum_probs=57.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc-cCCCCCceeeeeeeEEEECC-eeEEEEeCCcccccccccchHHHHHH----HH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE-AASYEFTTLTCIPGVIEYKG-ANIQLLDLPGIIEGAAQGKGRGRQVI----AV 75 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~~----~~ 75 (119)
.||.++|.+||||||+=..+...... ....++.|++...+.+.+-| ..+.+||..|.... +.+.+. .-
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f------men~~~~q~d~i 78 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF------MENYLSSQEDNI 78 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHH------HHHHHhhcchhh
Confidence 48999999999999986666533321 12235667777777666655 67889999994321 111111 24
Q ss_pred hcCCCEEEEEEeCCCC
Q psy6249 76 ARTADLVLMMLDATKQ 91 (119)
Q Consensus 76 ~~~~d~il~Vvd~~~~ 91 (119)
+++++++++|+|++..
T Consensus 79 F~nV~vli~vFDves~ 94 (295)
T KOG3886|consen 79 FRNVQVLIYVFDVESR 94 (295)
T ss_pred heeheeeeeeeeccch
Confidence 6899999999999875
No 317
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=4.4e-06 Score=63.84 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=59.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC---CeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK---GANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+-|+++|.=--|||||+-++.+.+....+..+-|.+---..+..+ ...++++||||...+. ....+-..-
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt-------~mRaRGa~v 78 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFT-------AMRARGASV 78 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHH-------HHHhcCCcc
Confidence 568999999999999999999887765555555554433444443 4689999999954321 111223477
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|.+++|+|+.+.
T Consensus 79 tDIaILVVa~dDG 91 (509)
T COG0532 79 TDIAILVVAADDG 91 (509)
T ss_pred ccEEEEEEEccCC
Confidence 8999999999985
No 318
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.41 E-value=9.8e-07 Score=58.14 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=34.2
Q ss_pred CeeEEEEeCCcccccccccchH-HHHHHHHhcCCCEEEEEEeCCCCchhH---HHHHHHHHHcC
Q psy6249 47 GANIQLLDLPGIIEGAAQGKGR-GRQVIAVARTADLVLMMLDATKQDVQR---GLLEKELESVG 106 (119)
Q Consensus 47 ~~~~~~~DtpG~~~~~~~~~~~-~~~~~~~~~~~d~il~Vvd~~~~~~~~---~~~~~~l~~~~ 106 (119)
..+..++||||+.+....-..+ ....+...-.+|.+++++|+......+ +.+.++++.-+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad 149 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD 149 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC
Confidence 3567899999987643221111 112333456789999999997642222 33444444443
No 319
>KOG0083|consensus
Probab=98.41 E-value=2.4e-07 Score=59.46 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=56.7
Q ss_pred EEcCCCCCHHHHHHHHhCCCcccCCCCCceee--eeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 6 VLDLKCSHESTLLSTLTHTQSEAASYEFTTLT--CIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 6 iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|.+++|||.|+-+.........++. .|+. .....+..++ .++++|||.|.... +.-+-.+++.+|+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fi-stvgid~rnkli~~~~~kvklqiwdtagqerf-------rsvt~ayyrda~a 73 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFI-STVGIDFRNKLIDMDDKKVKLQIWDTAGQERF-------RSVTHAYYRDADA 73 (192)
T ss_pred ccccCccCceEEEEEeccCceecCcee-eeeeeccccceeccCCcEEEEEEeeccchHHH-------hhhhHhhhcccce
Confidence 689999999999877664433222221 1211 1122233343 56889999995432 2234468899999
Q ss_pred EEEEEeCCCC--chhHHHHHHHHHHc
Q psy6249 82 VLMMLDATKQ--DVQRGLLEKELESV 105 (119)
Q Consensus 82 il~Vvd~~~~--~~~~~~~~~~l~~~ 105 (119)
++++.|.++. .+..+.+..++.++
T Consensus 74 llllydiankasfdn~~~wlsei~ey 99 (192)
T KOG0083|consen 74 LLLLYDIANKASFDNCQAWLSEIHEY 99 (192)
T ss_pred eeeeeecccchhHHHHHHHHHHHHHH
Confidence 9999999986 33445555555444
No 320
>KOG4252|consensus
Probab=98.39 E-value=2e-07 Score=62.54 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=56.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCcee--eeeeeEEEE--CCeeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTL--TCIPGVIEY--KGANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~--~~~~~~~~~--~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
.+++++|.-++||||+|.+.+..-..-... .|+ +.....+.+ .+....+|||+|..+. ....-.+++
T Consensus 21 iK~vivGng~VGKssmiqryCkgifTkdyk--ktIgvdflerqi~v~~Edvr~mlWdtagqeEf-------DaItkAyyr 91 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKGIFTKDYK--KTIGVDFLERQIKVLIEDVRSMLWDTAGQEEF-------DAITKAYYR 91 (246)
T ss_pred EEEEEECCCccchHHHHHHHhccccccccc--cccchhhhhHHHHhhHHHHHHHHHHhccchhH-------HHHHHHHhc
Confidence 589999999999999999998432211110 111 111111222 2456678999995332 233446889
Q ss_pred CCCEEEEEEeCCCCchhHHHHHHH
Q psy6249 78 TADLVLMMLDATKQDVQRGLLEKE 101 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~~~~~~~~~~ 101 (119)
+|.+.++|+.-+|. ..++...++
T Consensus 92 gaqa~vLVFSTTDr-~SFea~~~w 114 (246)
T KOG4252|consen 92 GAQASVLVFSTTDR-YSFEATLEW 114 (246)
T ss_pred cccceEEEEecccH-HHHHHHHHH
Confidence 99999999999986 344444333
No 321
>KOG1707|consensus
Probab=98.38 E-value=3.3e-06 Score=65.16 Aligned_cols=83 Identities=11% Similarity=0.098 Sum_probs=52.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.+|+++|..|+||||||-+|........-.+--..-..+..+.-+.....++|++--. +-.....+.+++||+
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~-------~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDS-------DDRLCLRKEIRKADV 82 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEeccccc-------chhHHHHHHHhhcCE
Confidence 5899999999999999999997765211110000011112222234457899997311 112334567899999
Q ss_pred EEEEEeCCCC
Q psy6249 82 VLMMLDATKQ 91 (119)
Q Consensus 82 il~Vvd~~~~ 91 (119)
|..|...+++
T Consensus 83 i~lvyavd~~ 92 (625)
T KOG1707|consen 83 ICLVYAVDDE 92 (625)
T ss_pred EEEEEecCCh
Confidence 9999988875
No 322
>PRK01889 GTPase RsgA; Reviewed
Probab=98.36 E-value=3.8e-07 Score=67.39 Aligned_cols=55 Identities=24% Similarity=0.224 Sum_probs=35.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-ccCCC-------CCceeeeeeeEEEECCeeEEEEeCCcccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS-EAASY-------EFTTLTCIPGVIEYKGANIQLLDLPGIIE 60 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~-~~~~~-------~~~t~~~~~~~~~~~~~~~~~~DtpG~~~ 60 (119)
+++++|.+|+|||||+|.|.+... .++.. .++|.......+.. ...++||||+..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~---~~~l~DtpG~~~ 259 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPS---GGLLIDTPGMRE 259 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecC---CCeecCCCchhh
Confidence 689999999999999999987543 22211 12333333333322 236899999843
No 323
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.35 E-value=4.3e-06 Score=61.02 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=31.3
Q ss_pred CeeEEEEeCCcccccccccchHHHHHHHHh-----cCCCEEEEEEeCCCCchhHHHHHH
Q psy6249 47 GANIQLLDLPGIIEGAAQGKGRGRQVIAVA-----RTADLVLMMLDATKQDVQRGLLEK 100 (119)
Q Consensus 47 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~-----~~~d~il~Vvd~~~~~~~~~~~~~ 100 (119)
+..+.++||||.........+--..+.+.+ ...+.+++|+|++.....+.....
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~ 254 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA 254 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH
Confidence 567899999997543222111011122211 346789999999976555554433
No 324
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.35 E-value=6.4e-06 Score=62.21 Aligned_cols=92 Identities=11% Similarity=0.129 Sum_probs=51.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh------CCCcc-cC--CCCCc--------eeeeeeeEEE-------------------EC
Q psy6249 3 TLRVLDLKCSHESTLLSTLT------HTQSE-AA--SYEFT--------TLTCIPGVIE-------------------YK 46 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~------~~~~~-~~--~~~~~--------t~~~~~~~~~-------------------~~ 46 (119)
.|+++|++||||||+...|. +.+.. ++ .+... ......-.+. ..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~ 181 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE 181 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC
Confidence 58999999999999999886 33321 11 11100 0000000010 02
Q ss_pred CeeEEEEeCCcccccccccchHHHHHHH--HhcCCCEEEEEEeCCCCchhHHH
Q psy6249 47 GANIQLLDLPGIIEGAAQGKGRGRQVIA--VARTADLVLMMLDATKQDVQRGL 97 (119)
Q Consensus 47 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~--~~~~~d~il~Vvd~~~~~~~~~~ 97 (119)
+..+.++||||-.... ..+..+... .....|.+++|+|++...+..+.
T Consensus 182 ~~DvViIDTaGr~~~d---~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~ 231 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQE---DSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ 231 (429)
T ss_pred CCCEEEEECCCCCcch---HHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH
Confidence 5688999999954321 122222222 23467899999999876444333
No 325
>KOG0448|consensus
Probab=98.30 E-value=6.8e-06 Score=64.49 Aligned_cols=86 Identities=16% Similarity=0.274 Sum_probs=53.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCcee-----eeeeeE----------------------------------
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTL-----TCIPGV---------------------------------- 42 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~-----~~~~~~---------------------------------- 42 (119)
+||+|.|..++||||++|++...+.-.+...++|- .-..|.
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~ 189 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAG 189 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcc
Confidence 69999999999999999999765543222211110 000000
Q ss_pred ----EEEC-------CeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 43 ----IEYK-------GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 43 ----~~~~-------~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+-+. ...+.++|.||+--... ...-.-..+..+|++|+|+++-+.
T Consensus 190 sLlrV~~p~~~csLLrnDivliDsPGld~~se----~tswid~~cldaDVfVlV~NaEnt 245 (749)
T KOG0448|consen 190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE----LTSWIDSFCLDADVFVLVVNAENT 245 (749)
T ss_pred eEEEEEecCccchhhhccceeccCCCCCCchh----hhHHHHHHhhcCCeEEEEecCccH
Confidence 0011 13678999999744321 122234577899999999999874
No 326
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.29 E-value=2.4e-06 Score=64.37 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++++|++|+||||+++.|.+
T Consensus 193 vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 327
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.29 E-value=2.5e-06 Score=59.83 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=21.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 4 LRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~~~~ 26 (119)
|+++|++|+|||||+|.+.|-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999998763
No 328
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.26 E-value=1.2e-06 Score=59.24 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
+++|+|++|||||||+|.+.|...
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 689999999999999999998764
No 329
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.25 E-value=1.3e-05 Score=57.38 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=32.6
Q ss_pred CCeeEEEEeCCcccccccccchHHHHHHHHh-----cCCCEEEEEEeCCCCchhHHHHHHHH
Q psy6249 46 KGANIQLLDLPGIIEGAAQGKGRGRQVIAVA-----RTADLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 46 ~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~-----~~~d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
.+..+.++||||..........--..+.+.. ..+|.+++|+|++...+.+.......
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 3578899999997543211110011122222 23899999999987655555544433
No 330
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.25 E-value=8.5e-06 Score=59.76 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
..|+|.|+||||||||++.|.
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999763
No 331
>KOG1673|consensus
Probab=98.24 E-value=1.9e-06 Score=56.69 Aligned_cols=95 Identities=12% Similarity=0.167 Sum_probs=59.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
+||+++|.+..|||||+-.-.+...+.......-+......+...+ ..+.+||..|.-+. .+..--.++.+
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~-------~n~lPiac~ds 93 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREF-------INMLPIACKDS 93 (205)
T ss_pred EEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhh-------hccCceeecCc
Confidence 6899999999999999877765544211111111222333344444 45679999994321 12222255788
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
-+|+|++|.+.+ ..++.+.++.++
T Consensus 94 vaIlFmFDLt~r-~TLnSi~~WY~Q 117 (205)
T KOG1673|consen 94 VAILFMFDLTRR-STLNSIKEWYRQ 117 (205)
T ss_pred EEEEEEEecCch-HHHHHHHHHHHH
Confidence 899999999986 566666666544
No 332
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.24 E-value=6.2e-07 Score=62.90 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=22.7
Q ss_pred eEEEEeCCcccccccccchHHHHHHHHhc--CCCEEEEEEeCCCC
Q psy6249 49 NIQLLDLPGIIEGAAQGKGRGRQVIAVAR--TADLVLMMLDATKQ 91 (119)
Q Consensus 49 ~~~~~DtpG~~~~~~~~~~~~~~~~~~~~--~~d~il~Vvd~~~~ 91 (119)
.+.++||||.++...-+ .......+.+. ..=++++++|+...
T Consensus 92 ~y~l~DtPGQiElf~~~-~~~~~i~~~L~~~~~~~~v~LvD~~~~ 135 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHS-DSGRKIVERLQKNGRLVVVFLVDSSFC 135 (238)
T ss_dssp SEEEEE--SSHHHHHHS-HHHHHHHHTSSS----EEEEEE-GGG-
T ss_pred cEEEEeCCCCEEEEEec-hhHHHHHHHHhhhcceEEEEEEecccc
Confidence 78999999987753322 22334444444 23478999999743
No 333
>KOG0462|consensus
Probab=98.24 E-value=8.6e-06 Score=62.73 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=60.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccc---------------CCCCCceeeeeeeEEEECC---eeEEEEeCCcccccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEA---------------ASYEFTTLTCIPGVIEYKG---ANIQLLDLPGIIEGAAQ 64 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~---------------~~~~~~t~~~~~~~~~~~~---~~~~~~DtpG~~~~~~~ 64 (119)
.++||..-.=|||||.-+|......+ ....+-|+..+...+.|.+ .-+++|||||..++..+
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 46677777789999999886433322 1235667777777777776 88999999998876543
Q ss_pred cchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 65 GKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 65 ~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
..+.+.-||++++|+||+..
T Consensus 142 -------VsRslaac~G~lLvVDA~qG 161 (650)
T KOG0462|consen 142 -------VSRSLAACDGALLVVDASQG 161 (650)
T ss_pred -------ehehhhhcCceEEEEEcCcC
Confidence 34566789999999999865
No 334
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.24 E-value=1.5e-06 Score=60.41 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
-|+|+|++|||||||+|.|.+-..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 379999999999999999987653
No 335
>KOG0393|consensus
Probab=98.23 E-value=2.7e-06 Score=57.95 Aligned_cols=82 Identities=13% Similarity=0.107 Sum_probs=53.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC-C--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK-G--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
.|++++|..++|||+|+-..+.........|.. .+-....+.++ + .++.+|||.|..+- .+-..-.+.+
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTV-Fdnys~~v~V~dg~~v~L~LwDTAGqedY-------DrlRplsY~~ 76 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTV-FDNYSANVTVDDGKPVELGLWDTAGQEDY-------DRLRPLSYPQ 76 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcCcccccCeE-EccceEEEEecCCCEEEEeeeecCCCccc-------ccccccCCCC
Confidence 689999999999999999888654432222211 12233335553 4 35789999995432 1100114578
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|+++..++..++
T Consensus 77 tdvfl~cfsv~~p 89 (198)
T KOG0393|consen 77 TDVFLLCFSVVSP 89 (198)
T ss_pred CCEEEEEEEcCCh
Confidence 9999998888887
No 336
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.22 E-value=3.8e-06 Score=62.47 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=51.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccc-C--CCCCceeeee------------------eeE-----------EEECCeeE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEA-A--SYEFTTLTCI------------------PGV-----------IEYKGANI 50 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~-~--~~~~~t~~~~------------------~~~-----------~~~~~~~~ 50 (119)
.++|+|++||||||++.+|....... . .....+.+.. ... -.+.+..+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~Dl 218 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHM 218 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCE
Confidence 57899999999999999996421100 0 0000000000 000 01236788
Q ss_pred EEEeCCcccccccccchHHHHHHHHh---cCCCEEEEEEeCCCCchhHHHHH
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVIAVA---RTADLVLMMLDATKQDVQRGLLE 99 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~~~~---~~~d~il~Vvd~~~~~~~~~~~~ 99 (119)
.+|||||...... .+. +.+..+ ....-.++|++++...+++....
T Consensus 219 VLIDTaG~~~~d~---~l~-e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 219 VLIDTIGMSQRDR---TVS-DQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred EEEcCCCCCcccH---HHH-HHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 9999999653211 111 222222 33456689999998766665443
No 337
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=98.21 E-value=3.9e-06 Score=55.48 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~ 23 (119)
|..++|+|++|||||||+++|..
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999974
No 338
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.21 E-value=1.3e-05 Score=60.92 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=59.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcc------cCC----------CCCceeeeeeeEEEECCeeEEEEeCCcccccccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSE------AAS----------YEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK 66 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~------~~~----------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~ 66 (119)
.|+||..-.-|||||+..|...... +++ ..+-|+-.....+.|++..++++||||..++.
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG---- 82 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG---- 82 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc----
Confidence 6889999899999999999744321 111 12344444444577889999999999976653
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 67 GRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 67 ~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
-+..+-+.=+|.+++++||...
T Consensus 83 ---GEVERvl~MVDgvlLlVDA~EG 104 (603)
T COG1217 83 ---GEVERVLSMVDGVLLLVDASEG 104 (603)
T ss_pred ---chhhhhhhhcceEEEEEEcccC
Confidence 3444566778999999999863
No 339
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.20 E-value=3.2e-07 Score=64.10 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
-+++|||+||||||+||.++|...
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~~ 55 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFYK 55 (250)
T ss_pred EEEEECCCCCCceeeeeeeccccc
Confidence 478999999999999999998653
No 340
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=1.2e-05 Score=60.12 Aligned_cols=52 Identities=8% Similarity=0.059 Sum_probs=29.5
Q ss_pred CeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCCchhHHHH
Q psy6249 47 GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQDVQRGLL 98 (119)
Q Consensus 47 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~~~~~~~~ 98 (119)
+..+.++||+|..........-...++.......-+++|+|++....++..+
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~ 305 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEI 305 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHH
Confidence 5789999999965421111001112333333223688999999875555543
No 341
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.18 E-value=1.2e-05 Score=60.30 Aligned_cols=21 Identities=14% Similarity=0.204 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
..|+++|++||||||++..|.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 368999999999999999996
No 342
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.18 E-value=2.8e-06 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++|+|++|+|||||++.|.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999999765
No 343
>KOG0458|consensus
Probab=98.17 E-value=1.5e-05 Score=61.57 Aligned_cols=98 Identities=26% Similarity=0.246 Sum_probs=62.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC-------------------------------CCCCceeeeeeeEEEECCeeE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA-------------------------------SYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~ 50 (119)
...+++|.-.+|||||+-.|...-..++ ...+.|...-...++-....+
T Consensus 178 l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~~ 257 (603)
T KOG0458|consen 178 LNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKIV 257 (603)
T ss_pred eEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCceeE
Confidence 3578999999999999876642111111 113444444444555567889
Q ss_pred EEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCC--------CchhHHHHHHHHHHcC
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATK--------QDVQRGLLEKELESVG 106 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~--------~~~~~~~~~~~l~~~~ 106 (119)
+++|+||.-++.+ ....-..+||+.++|+|++- +..+.......++.++
T Consensus 258 tliDaPGhkdFi~-------nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg 314 (603)
T KOG0458|consen 258 TLIDAPGHKDFIP-------NMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG 314 (603)
T ss_pred EEecCCCccccch-------hhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC
Confidence 9999999544432 33445578999999999973 2334445555555555
No 344
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=7.5e-06 Score=63.66 Aligned_cols=74 Identities=32% Similarity=0.426 Sum_probs=50.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEE---ECCeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIE---YKGANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+-|+++|+||.|||||+.+|...... .|..-..|.++ -....++++.+|.- -.++..-.+-
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~tk------~ti~~i~GPiTvvsgK~RRiTflEcp~D----------l~~miDvaKI 133 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRFTK------QTIDEIRGPITVVSGKTRRITFLECPSD----------LHQMIDVAKI 133 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHHHH------hhhhccCCceEEeecceeEEEEEeChHH----------HHHHHhHHHh
Confidence 35789999999999999999754321 12222233322 23467899998841 1344555678
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
||+|++.||+.-.
T Consensus 134 aDLVlLlIdgnfG 146 (1077)
T COG5192 134 ADLVLLLIDGNFG 146 (1077)
T ss_pred hheeEEEeccccC
Confidence 9999999999865
No 345
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=6.2e-06 Score=62.14 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=51.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC-------ccc---CCCCCcee--------eeeeeEEE------------ECCeeEEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ-------SEA---ASYEFTTL--------TCIPGVIE------------YKGANIQL 52 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~-------~~~---~~~~~~t~--------~~~~~~~~------------~~~~~~~~ 52 (119)
.++++|++||||||+...|.... ... ..+..... ........ ..+..+.+
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~VL 304 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELIL 304 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEEE
Confidence 38899999999999998886321 100 00000000 00000011 13568899
Q ss_pred EeCCcccccccccchHHHHHHHHhc--CCCEEEEEEeCCCCchhHHHHHH
Q psy6249 53 LDLPGIIEGAAQGKGRGRQVIAVAR--TADLVLMMLDATKQDVQRGLLEK 100 (119)
Q Consensus 53 ~DtpG~~~~~~~~~~~~~~~~~~~~--~~d~il~Vvd~~~~~~~~~~~~~ 100 (119)
+||||.........+-...++.... ...-+++|+|++...+++....+
T Consensus 305 IDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 305 IDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred EeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 9999975433222111122333321 23468899999987555544433
No 346
>KOG1532|consensus
Probab=98.16 E-value=4.6e-06 Score=59.59 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
..|.++|..|||||||..+|.
T Consensus 20 ~~ilVvGMAGSGKTTF~QrL~ 40 (366)
T KOG1532|consen 20 VIILVVGMAGSGKTTFMQRLN 40 (366)
T ss_pred cEEEEEecCCCCchhHHHHHH
Confidence 368899999999999999996
No 347
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.14 E-value=7.9e-06 Score=54.76 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~ 24 (119)
+-++|+|++|||||||+++|...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 46899999999999999999743
No 348
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.12 E-value=2.7e-05 Score=51.60 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=32.2
Q ss_pred CeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 47 GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 47 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
+..+.++|+||...........-.++. .....|.+++|+|+....+..+.+.+..+.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~-~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~ 138 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIK-RVVKPDEVLLVVDAMTGQDAVNQAKAFNEA 138 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHH-hhcCCCeEEEEEECCCChHHHHHHHHHHhh
Confidence 456889999996532111111111122 234589999999997765555444444333
No 349
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.12 E-value=4.3e-06 Score=57.79 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||+.+|.+-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 47899999999999999998765
No 350
>KOG3887|consensus
Probab=98.11 E-value=5.5e-06 Score=58.28 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=54.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCC-CCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAAS-YEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
++|.++|.--+||||+-+.......+... +.-.|..+....+...-.++.+||.||......... .+..-++++-
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~----D~e~iF~~~g 103 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSF----DYEMIFRGVG 103 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCcc----CHHHHHhccC
Confidence 68999999999999998777644332111 111111222222322346789999999876533322 2334568899
Q ss_pred EEEEEEeCCCC
Q psy6249 81 LVLMMLDATKQ 91 (119)
Q Consensus 81 ~il~Vvd~~~~ 91 (119)
+++||+|+.+.
T Consensus 104 ALifvIDaQdd 114 (347)
T KOG3887|consen 104 ALIFVIDAQDD 114 (347)
T ss_pred eEEEEEechHH
Confidence 99999999874
No 351
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.10 E-value=3.8e-06 Score=59.47 Aligned_cols=22 Identities=32% Similarity=0.244 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q psy6249 4 LRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~~~ 25 (119)
++++|++|||||||+++|.+.-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 6899999999999999998744
No 352
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.09 E-value=8.7e-06 Score=54.73 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58999999999999999999864
No 353
>PTZ00099 rab6; Provisional
Probab=98.08 E-value=1.1e-05 Score=53.93 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=31.9
Q ss_pred eeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCCchhHHHHHHHH
Q psy6249 48 ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 48 ~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
..+.+|||||..... .....+++.+|++|+|+|++++ ..++.+..++
T Consensus 29 v~l~iwDt~G~e~~~-------~~~~~~~~~ad~~ilv~D~t~~-~sf~~~~~w~ 75 (176)
T PTZ00099 29 VRLQLWDTAGQERFR-------SLIPSYIRDSAAAIVVYDITNR-QSFENTTKWI 75 (176)
T ss_pred EEEEEEECCChHHhh-------hccHHHhCCCcEEEEEEECCCH-HHHHHHHHHH
Confidence 568899999964322 1233467999999999999986 3334443333
No 354
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.08 E-value=6.8e-06 Score=57.12 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999865
No 355
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.07 E-value=6.4e-06 Score=56.52 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 356
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.07 E-value=6.4e-06 Score=56.54 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999999865
No 357
>PRK14974 cell division protein FtsY; Provisional
Probab=98.06 E-value=3.1e-05 Score=56.95 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=29.6
Q ss_pred CeeEEEEeCCcccccccccchHHHHHHH--HhcCCCEEEEEEeCCCCchhHHHH
Q psy6249 47 GANIQLLDLPGIIEGAAQGKGRGRQVIA--VARTADLVLMMLDATKQDVQRGLL 98 (119)
Q Consensus 47 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~--~~~~~d~il~Vvd~~~~~~~~~~~ 98 (119)
+..+.++||+|...... .+..+... ...+.|.+++|+|++...+..+..
T Consensus 222 ~~DvVLIDTaGr~~~~~---~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDA---NLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred CCCEEEEECCCccCCcH---HHHHHHHHHHHhhCCceEEEeeccccchhHHHHH
Confidence 46789999999754321 11122111 223578999999998764444433
No 358
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.06 E-value=7e-06 Score=55.29 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999865
No 359
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.06 E-value=6.1e-06 Score=57.36 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
-++++|++||||||+++++.|.-
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 360
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.06 E-value=8.2e-06 Score=61.68 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=31.3
Q ss_pred CeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCCchhHHHHHHHHH
Q psy6249 47 GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQDVQRGLLEKELE 103 (119)
Q Consensus 47 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~~~~~~~~~~~l~ 103 (119)
+..+.++||||...........-..++.......-+.+|++++....++..+.+...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 568899999997443221111111222212233577888999876556555444443
No 361
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.06 E-value=7.1e-06 Score=56.04 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 362
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.06 E-value=4.1e-05 Score=63.34 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=46.8
Q ss_pred CCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC------------------CeeEEEEeCCcccccccccchHHHHHH
Q psy6249 12 SHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK------------------GANIQLLDLPGIIEGAAQGKGRGRQVI 73 (119)
Q Consensus 12 ~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~~~~~DtpG~~~~~~~~~~~~~~~~ 73 (119)
++||||+-+|.+.+....+..+-|.+--...++.+ -..+.+|||||.... .....
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F-------~~lr~ 544 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF-------TSLRK 544 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH-------HHHHH
Confidence 46999999999887755554444543322223322 123899999995332 11122
Q ss_pred HHhcCCCEEEEEEeCCCC
Q psy6249 74 AVARTADLVLMMLDATKQ 91 (119)
Q Consensus 74 ~~~~~~d~il~Vvd~~~~ 91 (119)
.....+|++++|+|+++.
T Consensus 545 ~g~~~aDivlLVVDa~~G 562 (1049)
T PRK14845 545 RGGSLADLAVLVVDINEG 562 (1049)
T ss_pred hhcccCCEEEEEEECccc
Confidence 345779999999999874
No 363
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.05 E-value=2.8e-06 Score=57.27 Aligned_cols=41 Identities=22% Similarity=0.126 Sum_probs=29.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVI 43 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~ 43 (119)
-+++.|++||||||++++|.....---+...||+.+.+|..
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv 46 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEV 46 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCc
Confidence 47899999999999999998655211123456777766664
No 364
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.05 E-value=7.7e-06 Score=55.71 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 365
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.05 E-value=8.1e-06 Score=55.88 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 366
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.04 E-value=8.9e-06 Score=55.63 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 367
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.04 E-value=5.4e-06 Score=60.80 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 4 LRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~~~~ 26 (119)
++++|++|||||||++.+.|-..
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999998764
No 368
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.04 E-value=8.4e-06 Score=55.81 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 369
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=6.9e-06 Score=57.52 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=30.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDL 55 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt 55 (119)
+++++|.+|||||||++.|.|.-. |+.|.+...+.-.-+++.
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~~-----------Pt~G~v~v~G~v~~li~l 96 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIYK-----------PTSGKVKVTGKVAPLIEL 96 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCccC-----------CCCceEEEcceEehhhhc
Confidence 689999999999999999998653 445555555543334443
No 370
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.02 E-value=8.8e-06 Score=55.61 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|+|...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998653
No 371
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.02 E-value=9.9e-06 Score=55.75 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 372
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.01 E-value=9.4e-06 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998653
No 373
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.01 E-value=9.5e-06 Score=55.79 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999987653
No 374
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.01 E-value=8.9e-06 Score=55.89 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999998653
No 375
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=1.1e-05 Score=56.10 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 376
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.01 E-value=1e-05 Score=56.16 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998653
No 377
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.01 E-value=1.1e-05 Score=54.81 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 378
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.01 E-value=1.1e-05 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
No 379
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.01 E-value=1e-05 Score=54.26 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998753
No 380
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.01 E-value=1e-05 Score=56.01 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 381
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.00 E-value=9.9e-06 Score=55.85 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|++..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
No 382
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=1.1e-05 Score=55.55 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 383
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=8.5e-06 Score=55.69 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 384
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=9.5e-06 Score=55.42 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 385
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.00 E-value=1e-05 Score=56.39 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57999999999999999999865
No 386
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.00 E-value=3.8e-05 Score=57.43 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-|+++|+.||||||.+..|..
T Consensus 205 vi~LVGPTGVGKTTTlAKLAa 225 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAA 225 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999998863
No 387
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.00 E-value=1e-05 Score=54.95 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999865
No 388
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=1.3e-05 Score=53.62 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999997653
No 389
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.00 E-value=1e-05 Score=52.14 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=32.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcc--cCCCCCceeeeeeeEEEECCeeEEEEeCC
Q psy6249 4 LRVLDLKCSHESTLLSTLTHTQSE--AASYEFTTLTCIPGVIEYKGANIQLLDLP 56 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~Dtp 56 (119)
|+++|++|||||||++.|...... ....+.+|..+..+. .++..+.++|..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~ 54 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKE 54 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHH
Confidence 689999999999999999865321 112233455554443 245555566543
No 390
>PRK10908 cell division protein FtsE; Provisional
Probab=98.00 E-value=1.3e-05 Score=55.27 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999865
No 391
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.99 E-value=8.5e-06 Score=55.13 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc-CCCCCceeeeeeeE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA-ASYEFTTLTCIPGV 42 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~-~~~~~~t~~~~~~~ 42 (119)
+-|+++|++|||||||.+.|....... ...+.||+.+..+.
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE 46 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGD 46 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCC
Confidence 358899999999999999998654322 22356676666664
No 392
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.99 E-value=1.1e-05 Score=55.29 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999999865
No 393
>KOG1145|consensus
Probab=97.99 E-value=4.8e-05 Score=58.83 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=55.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE---CCeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY---KGANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
+-|-++|.-.=|||||+-+|.+......+..+-|. +.|.+.+ +|..++|+||||...+.. ...+-...
T Consensus 154 PVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQ--hIGAF~V~~p~G~~iTFLDTPGHaAF~a-------MRaRGA~v 224 (683)
T KOG1145|consen 154 PVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQ--HIGAFTVTLPSGKSITFLDTPGHAAFSA-------MRARGANV 224 (683)
T ss_pred CeEEEeecccCChhhHHHHHhhCceehhhcCCccc--eeceEEEecCCCCEEEEecCCcHHHHHH-------HHhccCcc
Confidence 46889999999999999999987765555555443 3444433 589999999999644311 11223456
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|.+++|+-+.|.
T Consensus 225 tDIvVLVVAadDG 237 (683)
T KOG1145|consen 225 TDIVVLVVAADDG 237 (683)
T ss_pred ccEEEEEEEccCC
Confidence 7777777777653
No 394
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.99 E-value=1e-05 Score=54.74 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.|...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999998753
No 395
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=2.7e-05 Score=62.44 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=50.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccc-C----------CCCCcee------eeeee--EE-------------EECCeeE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEA-A----------SYEFTTL------TCIPG--VI-------------EYKGANI 50 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~-~----------~~~~~t~------~~~~~--~~-------------~~~~~~~ 50 (119)
.++|+|++||||||++..|.+..... + .+..... ....+ .. ...+..+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 47999999999999999997432100 0 0100000 00000 00 0125678
Q ss_pred EEEeCCcccccccccchHHHHHH--HHhcCCCEEEEEEeCCCCchhHHHH
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVI--AVARTADLVLMMLDATKQDVQRGLL 98 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~--~~~~~~d~il~Vvd~~~~~~~~~~~ 98 (119)
.+|||||...... .+..+.. ......+-+++|+|++...++++.+
T Consensus 267 VLIDTAGRs~~d~---~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i 313 (767)
T PRK14723 267 VLIDTVGMSQRDR---NVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV 313 (767)
T ss_pred EEEeCCCCCccCH---HHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH
Confidence 9999999644321 1222221 1223456789999999765555543
No 396
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=6.8e-05 Score=56.42 Aligned_cols=98 Identities=18% Similarity=0.121 Sum_probs=69.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccC---CCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAA---SYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
-|+-.|.--=|||||+.++++...... ...+.|.+.........+..+.++|.||+.+. -...+..+...
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~-------i~~miag~~~~ 74 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF-------ISNLLAGLGGI 74 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH-------HHHHHhhhcCC
Confidence 467788888899999999998765332 34677777777777777789999999997543 33455667789
Q ss_pred CEEEEEEeCCCC-chhHHHHHHHHHHcCC
Q psy6249 80 DLVLMMLDATKQ-DVQRGLLEKELESVGI 107 (119)
Q Consensus 80 d~il~Vvd~~~~-~~~~~~~~~~l~~~~~ 107 (119)
|..++|||+.+. ..+.-+....|..++.
T Consensus 75 d~alLvV~~deGl~~qtgEhL~iLdllgi 103 (447)
T COG3276 75 DYALLVVAADEGLMAQTGEHLLILDLLGI 103 (447)
T ss_pred ceEEEEEeCccCcchhhHHHHHHHHhcCC
Confidence 999999999653 3344444444555543
No 397
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.98 E-value=1.2e-05 Score=55.67 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999999875
No 398
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.98 E-value=6.8e-06 Score=56.85 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
-.+|+|++|+|||||++.|+|.-.
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccC
Confidence 368999999999999999998764
No 399
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.98 E-value=1.2e-05 Score=54.91 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999864
No 400
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.97 E-value=3.5e-05 Score=55.70 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
..|+|+|++|||||||++.|..
T Consensus 35 ~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 35 HRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998753
No 401
>PRK08118 topology modulation protein; Reviewed
Probab=97.97 E-value=7.3e-06 Score=54.49 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHhC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~ 23 (119)
|++|.|+|++|||||||-+.|..
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999999874
No 402
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=1.3e-05 Score=55.85 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57999999999999999999865
No 403
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.97 E-value=1.4e-05 Score=55.57 Aligned_cols=23 Identities=30% Similarity=0.262 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999999865
No 404
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=1.4e-05 Score=55.80 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999865
No 405
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=1.3e-05 Score=55.80 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999865
No 406
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.97 E-value=1.4e-05 Score=55.96 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 407
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.96 E-value=1.2e-05 Score=55.73 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57999999999999999999864
No 408
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.96 E-value=1.4e-05 Score=54.91 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.|...
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999998653
No 409
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.96 E-value=1.4e-05 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.+..
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 410
>KOG0468|consensus
Probab=97.96 E-value=0.00014 Score=57.48 Aligned_cols=82 Identities=16% Similarity=0.256 Sum_probs=56.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccC--------CC---------CCceeeeeeeEEEEC-----CeeEEEEeCCcccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAA--------SY---------EFTTLTCIPGVIEYK-----GANIQLLDLPGIIE 60 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~--------~~---------~~~t~~~~~~~~~~~-----~~~~~~~DtpG~~~ 60 (119)
.|+++|.=..|||+|+..|....-... .| .++++..++-.+-.. ..-++++||||...
T Consensus 130 nV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVn 209 (971)
T KOG0468|consen 130 NVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVN 209 (971)
T ss_pred EEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCccc
Confidence 689999999999999999964322110 01 234444444433332 34588999999765
Q ss_pred cccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 61 GAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
. ..+....++.+|++++|+|+...
T Consensus 210 F-------~DE~ta~l~~sDgvVlvvDv~EG 233 (971)
T KOG0468|consen 210 F-------SDETTASLRLSDGVVLVVDVAEG 233 (971)
T ss_pred c-------hHHHHHHhhhcceEEEEEEcccC
Confidence 4 45566788999999999999864
No 411
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.96 E-value=9.9e-06 Score=55.45 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57999999999999999999864
No 412
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.96 E-value=1.7e-05 Score=52.78 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.+...
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998653
No 413
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.96 E-value=1.6e-05 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 414
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.95 E-value=1.6e-05 Score=54.40 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 415
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.95 E-value=1.4e-05 Score=56.87 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|+|..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 416
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.95 E-value=1.4e-05 Score=56.46 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
No 417
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.95 E-value=1.5e-05 Score=55.66 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999865
No 418
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=1.5e-05 Score=56.71 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999864
No 419
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.94 E-value=1.1e-05 Score=62.15 Aligned_cols=24 Identities=33% Similarity=0.261 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
+++++|++|||||||++.|.+...
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 789999999999999999997653
No 420
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.93 E-value=1.4e-05 Score=57.68 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
-++++|++|||||||++.|++.-.
T Consensus 33 i~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 378999999999999999998653
No 421
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.93 E-value=1.6e-05 Score=55.51 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 422
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.93 E-value=1.7e-05 Score=57.34 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|+|..
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 423
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.93 E-value=1.8e-05 Score=52.62 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++||||||+.+.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58999999999999999998754
No 424
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=1.8e-05 Score=54.10 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.+...
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998653
No 425
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.92 E-value=1.7e-05 Score=56.96 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999865
No 426
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.92 E-value=1.9e-05 Score=55.45 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 427
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.92 E-value=1.8e-05 Score=54.11 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.|...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998653
No 428
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.92 E-value=1.7e-05 Score=55.15 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998653
No 429
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.92 E-value=1.6e-05 Score=56.97 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|+|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 430
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.92 E-value=1.8e-05 Score=56.53 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|+|..
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999865
No 431
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.92 E-value=1.6e-05 Score=55.00 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998653
No 432
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.91 E-value=1.9e-05 Score=56.30 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 433
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.91 E-value=2e-05 Score=53.74 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.+...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998753
No 434
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.91 E-value=1.8e-05 Score=51.27 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999999865
No 435
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.91 E-value=1.9e-05 Score=56.12 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|+|..
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 436
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.91 E-value=1.9e-05 Score=55.96 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 437
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.91 E-value=1.7e-05 Score=56.26 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|+|..
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999865
No 438
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=1.9e-05 Score=55.17 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999864
No 439
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.90 E-value=2.1e-05 Score=52.33 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.+...
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 579999999999999999998653
No 440
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.90 E-value=2.2e-05 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 441
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.90 E-value=2.1e-05 Score=53.90 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 442
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.90 E-value=2.2e-05 Score=53.42 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998653
No 443
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.90 E-value=1.9e-05 Score=55.52 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999999874
No 444
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.90 E-value=1.8e-05 Score=54.74 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 479999999999999999998653
No 445
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.90 E-value=2.2e-05 Score=54.74 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 446
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.90 E-value=1.9e-05 Score=54.79 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.|...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 478999999999999999998753
No 447
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.89 E-value=2.9e-05 Score=54.67 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.+...
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999998653
No 448
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.89 E-value=2.1e-05 Score=56.84 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 449
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.89 E-value=2.1e-05 Score=54.47 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47999999999999999999864
No 450
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.89 E-value=1.9e-05 Score=54.82 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 579999999999999999998653
No 451
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.89 E-value=1.5e-05 Score=63.40 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
+++++|++|||||||++.|.|...
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998653
No 452
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.89 E-value=2.2e-05 Score=55.83 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998753
No 453
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.89 E-value=2.4e-05 Score=55.66 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999998653
No 454
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=1.9e-05 Score=55.91 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57999999999999999999864
No 455
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.88 E-value=0.00012 Score=52.33 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
.+++++|++|+||||++..|..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 4789999999999999998864
No 456
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=2.2e-05 Score=57.81 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999865
No 457
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=2.2e-05 Score=54.64 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|++...
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 578999999999999999998653
No 458
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.88 E-value=1.7e-05 Score=55.49 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
-|+++|++|||||||+.+|.+.
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 4899999999999999999873
No 459
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=6.1e-05 Score=56.31 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
.++++|++||||||++..|.
T Consensus 208 ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999886
No 460
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.87 E-value=2.6e-05 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 461
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.87 E-value=2.2e-05 Score=55.62 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999865
No 462
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=2.2e-05 Score=56.36 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~ 57 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999865
No 463
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.87 E-value=2.3e-05 Score=54.67 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 464
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.87 E-value=7.2e-05 Score=57.09 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=57.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccC---------------CCCCceeeeeeeEEEEC-----CeeEEEEeCCcccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAA---------------SYEFTTLTCIPGVIEYK-----GANIQLLDLPGIIEGA 62 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~---------------~~~~~t~~~~~~~~~~~-----~~~~~~~DtpG~~~~~ 62 (119)
..+++..-.=|||||--+|......++ ...+-|+..+.-.+.|. ...+.++||||.+++.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 346666677899999998864333221 23566776666666664 2578899999998875
Q ss_pred cccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 63 AQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 63 ~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
-+- .+.+.-|.+.++|+||+..
T Consensus 91 YEV-------SRSLAACEGalLvVDAsQG 112 (603)
T COG0481 91 YEV-------SRSLAACEGALLVVDASQG 112 (603)
T ss_pred EEe-------hhhHhhCCCcEEEEECccc
Confidence 433 3566778999999999976
No 465
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.86 E-value=2.2e-05 Score=52.38 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.|...
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 578999999999999999998754
No 466
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.86 E-value=2e-05 Score=54.78 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccCC
Confidence 579999999999999999998753
No 467
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.86 E-value=2.7e-05 Score=54.04 Aligned_cols=24 Identities=13% Similarity=-0.017 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998653
No 468
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.86 E-value=1.3e-05 Score=64.07 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
+|+++|.+|||||||.+.|+|..
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999876
No 469
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.86 E-value=2.4e-05 Score=54.02 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57999999999999999999865
No 470
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=2.2e-05 Score=55.96 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++|+|++|+|||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 471
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=2.4e-05 Score=54.26 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.|...
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998653
No 472
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.86 E-value=2.1e-05 Score=55.60 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
-++++|++|||||||++++.|-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999983
No 473
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.86 E-value=2.2e-05 Score=53.93 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.|...
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 478999999999999999998753
No 474
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.86 E-value=2.6e-05 Score=54.94 Aligned_cols=23 Identities=30% Similarity=0.208 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 29 LTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999999865
No 475
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.86 E-value=2.9e-05 Score=54.38 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 578999999999999999998653
No 476
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.86 E-value=2.8e-05 Score=53.32 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999998653
No 477
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.85 E-value=2.3e-05 Score=53.88 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.|...
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999999998653
No 478
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=2.6e-05 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.|...
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999999998753
No 479
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.85 E-value=2.3e-05 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 480
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.85 E-value=1.5e-05 Score=49.57 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+|.|+|||||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 481
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=2.8e-05 Score=54.24 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=28.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeE
Q psy6249 4 LRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 50 (119)
-+++||+|||||||.+.|.|... -..+.|.+.++|..+
T Consensus 33 haiMGPNGsGKSTLa~~i~G~p~---------Y~Vt~G~I~~~GedI 70 (251)
T COG0396 33 HAIMGPNGSGKSTLAYTIMGHPK---------YEVTEGEILFDGEDI 70 (251)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC---------ceEecceEEECCccc
Confidence 47999999999999999997542 145567777765443
No 482
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.85 E-value=2.4e-05 Score=57.59 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|+|..
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999999865
No 483
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.85 E-value=2.6e-05 Score=55.60 Aligned_cols=23 Identities=26% Similarity=0.184 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999865
No 484
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=2.7e-05 Score=55.88 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999865
No 485
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.84 E-value=2e-05 Score=58.12 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 4 LRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~~~~ 26 (119)
++++|++||||||++..|.|...
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67999999999999999998764
No 486
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.84 E-value=2.7e-05 Score=56.43 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|++..
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999865
No 487
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=2.5e-05 Score=55.58 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999998753
No 488
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=2.9e-05 Score=52.97 Aligned_cols=24 Identities=33% Similarity=0.261 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|++...
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCC
Confidence 579999999999999999998653
No 489
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=2.5e-05 Score=55.89 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~ 57 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999765
No 490
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.84 E-value=2.9e-05 Score=54.82 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|+|||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 491
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=2.7e-05 Score=55.93 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++|+|++|+|||||++.|.|..
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999865
No 492
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.83 E-value=2.4e-05 Score=54.30 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q psy6249 4 LRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~~~ 25 (119)
|.++|.+|||||||+|.++|.-
T Consensus 35 vtViGsNGAGKSTlln~iaG~l 56 (263)
T COG1101 35 VTVIGSNGAGKSTLLNAIAGDL 56 (263)
T ss_pred EEEEcCCCccHHHHHHHhhCcc
Confidence 6789999999999999999764
No 493
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.83 E-value=2.9e-05 Score=54.96 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998653
No 494
>PRK06217 hypothetical protein; Validated
Probab=97.83 E-value=1.7e-05 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~ 23 (119)
|++|+|+|.+||||||+-..|..
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999999974
No 495
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.83 E-value=2.7e-05 Score=53.07 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|.+...
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 579999999999999999998643
No 496
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.83 E-value=2.8e-05 Score=53.76 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 497
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=3.4e-05 Score=53.57 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|+|||||++.|++...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998753
No 498
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.83 E-value=3.6e-05 Score=53.67 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|++..
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57999999999999999999864
No 499
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=2.9e-05 Score=55.53 Aligned_cols=23 Identities=17% Similarity=0.110 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 500
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=2.9e-05 Score=54.64 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 47999999999999999999864
Done!