Query psy6249
Match_columns 119
No_of_seqs 139 out of 1102
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 21:32:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a9a_A Ribosome-interacting GT 100.0 1.9E-29 6.3E-34 184.9 11.5 118 2-119 73-190 (376)
2 1jal_A YCHF protein; nucleotid 99.9 1.2E-23 4.2E-28 153.4 5.0 104 2-105 3-135 (363)
3 1lnz_A SPO0B-associated GTP-bi 99.9 2E-22 6.8E-27 146.2 8.8 117 2-118 159-281 (342)
4 2dby_A GTP-binding protein; GD 99.9 3.5E-22 1.2E-26 146.1 6.5 103 1-103 1-136 (368)
5 2ohf_A Protein OLA1, GTP-bindi 99.9 2.9E-22 9.9E-27 147.5 5.2 104 2-105 23-155 (396)
6 1wxq_A GTP-binding protein; st 99.8 1.2E-21 4E-26 144.6 6.9 104 2-105 1-141 (397)
7 3iby_A Ferrous iron transport 99.8 1.7E-20 5.9E-25 131.1 10.8 102 1-104 1-108 (256)
8 3lxw_A GTPase IMAP family memb 99.8 4.3E-20 1.5E-24 128.3 10.7 112 2-113 22-141 (247)
9 1mky_A Probable GTP-binding pr 99.8 2.2E-19 7.6E-24 133.7 13.0 104 1-104 1-108 (439)
10 1ni3_A YCHF GTPase, YCHF GTP-b 99.8 7.3E-20 2.5E-24 134.8 10.2 89 2-90 21-127 (392)
11 3i8s_A Ferrous iron transport 99.8 4.6E-19 1.6E-23 124.9 11.9 93 2-94 4-101 (274)
12 1wf3_A GTP-binding protein; GT 99.8 1.4E-18 4.6E-23 124.1 13.6 91 2-92 8-100 (301)
13 2dyk_A GTP-binding protein; GT 99.8 2.1E-18 7.2E-23 110.9 13.3 104 1-104 1-106 (161)
14 3a1s_A Iron(II) transport prot 99.8 2E-18 7E-23 120.7 12.9 94 2-96 6-101 (258)
15 2gj8_A MNME, tRNA modification 99.8 1.4E-18 4.8E-23 114.2 11.2 90 2-91 5-96 (172)
16 2xtp_A GTPase IMAP family memb 99.8 4.3E-18 1.5E-22 118.4 13.2 101 2-102 23-129 (260)
17 3iev_A GTP-binding protein ERA 99.8 2.4E-18 8.3E-23 123.0 12.1 89 3-91 12-105 (308)
18 2wji_A Ferrous iron transport 99.8 6.5E-18 2.2E-22 110.0 13.2 89 2-91 4-94 (165)
19 3lxx_A GTPase IMAP family memb 99.8 3.9E-18 1.3E-22 117.4 11.9 104 2-105 30-140 (239)
20 3b1v_A Ferrous iron uptake tra 99.8 1.8E-18 6.3E-23 121.9 9.2 90 1-92 3-94 (272)
21 3tw8_B RAS-related protein RAB 99.8 5.3E-18 1.8E-22 110.8 10.0 93 2-102 10-104 (181)
22 3k53_A Ferrous iron transport 99.8 9.4E-18 3.2E-22 117.7 11.7 94 2-96 4-99 (271)
23 2qtf_A Protein HFLX, GTP-bindi 99.8 1.9E-17 6.4E-22 120.9 13.7 103 3-105 181-288 (364)
24 2qu8_A Putative nucleolar GTP- 99.8 1.6E-17 5.4E-22 113.4 12.5 90 2-91 30-121 (228)
25 3tkl_A RAS-related protein RAB 99.8 9E-18 3.1E-22 111.3 10.8 83 2-91 17-101 (196)
26 1udx_A The GTP-binding protein 99.8 2.7E-18 9.1E-23 127.3 8.8 115 3-117 159-275 (416)
27 1ek0_A Protein (GTP-binding pr 99.7 1.6E-17 5.4E-22 107.4 10.8 83 2-91 4-88 (170)
28 3cph_A RAS-related protein SEC 99.7 1.6E-17 5.6E-22 111.5 11.2 83 2-91 21-105 (213)
29 1r8s_A ADP-ribosylation factor 99.7 3.1E-17 1.1E-21 105.8 12.1 92 2-104 1-92 (164)
30 2bme_A RAB4A, RAS-related prot 99.7 1.2E-17 4.1E-22 109.9 10.4 83 2-91 11-95 (186)
31 1ksh_A ARF-like protein 2; sma 99.7 2.1E-17 7.2E-22 109.0 11.0 90 2-102 19-108 (186)
32 1zj6_A ADP-ribosylation factor 99.7 3.6E-17 1.2E-21 108.1 11.6 90 2-102 17-106 (187)
33 1fzq_A ADP-ribosylation factor 99.7 7.4E-17 2.5E-21 106.5 13.1 92 2-104 17-108 (181)
34 2hjg_A GTP-binding protein ENG 99.7 2.9E-18 1E-22 127.5 6.9 91 2-92 4-96 (436)
35 3gee_A MNME, tRNA modification 99.7 7.4E-18 2.5E-22 126.8 9.1 90 2-91 234-325 (476)
36 2il1_A RAB12; G-protein, GDP, 99.7 2E-17 6.7E-22 110.1 10.2 83 2-91 27-111 (192)
37 2y8e_A RAB-protein 6, GH09086P 99.7 2.5E-17 8.7E-22 107.3 10.5 83 2-91 15-99 (179)
38 1zd9_A ADP-ribosylation factor 99.7 5.6E-17 1.9E-21 107.5 12.3 92 2-103 23-114 (188)
39 1m2o_B GTP-binding protein SAR 99.7 4.8E-17 1.7E-21 108.2 11.9 90 2-102 24-113 (190)
40 1g16_A RAS-related protein SEC 99.7 1.4E-17 4.7E-22 107.8 8.9 83 2-91 4-88 (170)
41 1upt_A ARL1, ADP-ribosylation 99.7 5.4E-17 1.9E-21 105.2 11.7 90 2-102 8-97 (171)
42 2bcg_Y Protein YP2, GTP-bindin 99.7 2.7E-17 9.2E-22 110.2 10.4 83 2-91 9-93 (206)
43 4dhe_A Probable GTP-binding pr 99.7 1.1E-17 3.8E-22 113.2 8.6 90 2-91 30-128 (223)
44 1wms_A RAB-9, RAB9, RAS-relate 99.7 8.3E-17 2.8E-21 104.9 12.4 83 2-91 8-92 (177)
45 1z06_A RAS-related protein RAB 99.7 4E-17 1.4E-21 108.1 11.0 84 2-91 21-106 (189)
46 2hxs_A RAB-26, RAS-related pro 99.7 1.2E-17 4.2E-22 109.0 8.0 83 2-91 7-92 (178)
47 2h17_A ADP-ribosylation factor 99.7 2.8E-17 9.7E-22 108.2 9.8 90 2-102 22-111 (181)
48 1x3s_A RAS-related protein RAB 99.7 1.5E-16 5E-21 105.2 13.1 96 2-105 16-113 (195)
49 2ew1_A RAS-related protein RAB 99.7 3.4E-17 1.2E-21 110.3 10.1 83 2-91 27-111 (201)
50 2hup_A RAS-related protein RAB 99.7 3.7E-17 1.3E-21 109.7 10.2 83 2-91 30-114 (201)
51 1f6b_A SAR1; gtpases, N-termin 99.7 3.9E-17 1.3E-21 109.4 10.3 91 2-103 26-116 (198)
52 2efe_B Small GTP-binding prote 99.7 8.7E-17 3E-21 105.2 11.7 83 2-91 13-97 (181)
53 4dcu_A GTP-binding protein ENG 99.7 7E-18 2.4E-22 126.1 7.2 103 2-104 24-129 (456)
54 2a5j_A RAS-related protein RAB 99.7 4.6E-17 1.6E-21 108.0 10.4 83 2-91 22-106 (191)
55 2f7s_A C25KG, RAS-related prot 99.7 7.4E-17 2.5E-21 108.9 11.5 98 2-107 26-135 (217)
56 3clv_A RAB5 protein, putative; 99.7 6.3E-17 2.1E-21 107.2 10.9 83 2-91 8-129 (208)
57 3bc1_A RAS-related protein RAB 99.7 7.4E-17 2.5E-21 106.3 11.2 83 2-91 12-106 (195)
58 2wjg_A FEOB, ferrous iron tran 99.7 8.7E-17 3E-21 106.0 11.5 89 2-91 8-98 (188)
59 1z2a_A RAS-related protein RAB 99.7 8.7E-17 3E-21 103.8 11.1 83 2-91 6-90 (168)
60 2fu5_C RAS-related protein RAB 99.7 7.8E-18 2.7E-22 110.7 6.2 83 2-91 9-93 (183)
61 2o52_A RAS-related protein RAB 99.7 3E-17 1E-21 109.9 9.2 83 2-91 26-110 (200)
62 1z0f_A RAB14, member RAS oncog 99.7 6.4E-17 2.2E-21 105.4 10.5 83 2-91 16-100 (179)
63 2g6b_A RAS-related protein RAB 99.7 3.7E-17 1.3E-21 106.9 9.3 83 2-91 11-96 (180)
64 2h57_A ADP-ribosylation factor 99.7 4.7E-17 1.6E-21 107.8 9.8 82 2-91 22-103 (190)
65 1r2q_A RAS-related protein RAB 99.7 6.6E-17 2.3E-21 104.4 10.3 83 2-91 7-91 (170)
66 1zbd_A Rabphilin-3A; G protein 99.7 1.2E-16 4E-21 106.8 11.7 83 2-91 9-93 (203)
67 1z08_A RAS-related protein RAB 99.7 2.3E-17 7.9E-22 106.8 8.0 83 2-91 7-91 (170)
68 2b6h_A ADP-ribosylation factor 99.7 1E-16 3.4E-21 106.8 11.2 92 2-104 30-121 (192)
69 2p5s_A RAS and EF-hand domain 99.7 6E-17 2.1E-21 108.2 9.9 83 2-91 29-113 (199)
70 2lkc_A Translation initiation 99.7 1E-16 3.5E-21 104.6 10.8 83 2-91 9-91 (178)
71 2oil_A CATX-8, RAS-related pro 99.7 1.3E-16 4.5E-21 105.8 11.3 83 2-91 26-110 (193)
72 1moz_A ARL1, ADP-ribosylation 99.7 3.2E-17 1.1E-21 107.6 8.3 93 2-105 19-111 (183)
73 1z0j_A RAB-22, RAS-related pro 99.7 1.8E-16 6E-21 102.5 11.6 83 2-91 7-91 (170)
74 4bas_A ADP-ribosylation factor 99.7 1.3E-16 4.5E-21 105.9 10.8 92 2-102 18-109 (199)
75 1u8z_A RAS-related protein RAL 99.7 1.9E-16 6.5E-21 101.9 11.2 82 2-91 5-88 (168)
76 3cpj_B GTP-binding protein YPT 99.7 6E-17 2E-21 110.1 9.2 83 2-91 14-98 (223)
77 2x77_A ADP-ribosylation factor 99.7 8.1E-17 2.8E-21 106.5 9.6 90 2-102 23-112 (189)
78 1xzp_A Probable tRNA modificat 99.7 7.8E-18 2.7E-22 126.8 5.1 90 2-91 244-336 (482)
79 3t5g_A GTP-binding protein RHE 99.7 1.5E-16 5.2E-21 104.3 10.7 82 2-91 7-90 (181)
80 2fg5_A RAB-22B, RAS-related pr 99.7 1.1E-16 3.7E-21 106.4 9.9 81 2-91 24-108 (192)
81 4dsu_A GTPase KRAS, isoform 2B 99.7 1.9E-16 6.3E-21 104.1 10.9 82 2-91 5-88 (189)
82 3r7w_A Gtpase1, GTP-binding pr 99.7 8.4E-17 2.9E-21 114.9 9.8 87 2-91 4-93 (307)
83 2gf9_A RAS-related protein RAB 99.7 1.4E-16 4.6E-21 105.5 10.1 83 2-91 23-107 (189)
84 1kao_A RAP2A; GTP-binding prot 99.7 3.4E-16 1.2E-20 100.6 11.7 82 2-91 4-87 (167)
85 1vg8_A RAS-related protein RAB 99.7 2.5E-16 8.7E-21 105.2 11.4 83 2-91 9-93 (207)
86 3def_A T7I23.11 protein; chlor 99.7 3.3E-16 1.1E-20 109.4 12.4 90 2-91 37-129 (262)
87 3l0i_B RAS-related protein RAB 99.7 8.2E-18 2.8E-22 112.4 3.7 96 2-105 34-131 (199)
88 2bov_A RAla, RAS-related prote 99.7 3.5E-16 1.2E-20 104.3 11.6 82 2-91 15-98 (206)
89 1ky3_A GTP-binding protein YPT 99.7 1.2E-16 4.2E-21 104.3 9.1 83 2-91 9-94 (182)
90 3q85_A GTP-binding protein REM 99.7 1.9E-16 6.4E-21 102.6 9.8 84 2-91 3-88 (169)
91 1ega_A Protein (GTP-binding pr 99.7 2.7E-17 9.2E-22 117.3 6.3 89 2-90 9-100 (301)
92 2a9k_A RAS-related protein RAL 99.7 3.9E-16 1.3E-20 102.3 11.3 82 2-91 19-102 (187)
93 2hjg_A GTP-binding protein ENG 99.7 1.2E-16 4.2E-21 118.8 9.8 90 2-91 176-270 (436)
94 2fn4_A P23, RAS-related protei 99.7 4.5E-16 1.5E-20 101.5 11.2 82 2-91 10-93 (181)
95 2e87_A Hypothetical protein PH 99.7 4.7E-16 1.6E-20 113.0 12.3 90 2-91 168-259 (357)
96 2iwr_A Centaurin gamma 1; ANK 99.7 2.7E-16 9.3E-21 102.8 10.0 76 2-91 8-85 (178)
97 3dz8_A RAS-related protein RAB 99.7 4.7E-17 1.6E-21 108.0 6.1 84 1-91 23-108 (191)
98 1h65_A Chloroplast outer envel 99.7 6.8E-16 2.3E-20 108.1 12.3 89 2-90 40-131 (270)
99 2nzj_A GTP-binding protein REM 99.7 2.7E-16 9.3E-21 102.2 9.3 83 2-91 5-90 (175)
100 3q72_A GTP-binding protein RAD 99.7 1.9E-16 6.4E-21 102.3 8.3 81 1-91 2-85 (166)
101 4dcu_A GTP-binding protein ENG 99.7 3.4E-16 1.2E-20 117.0 10.8 103 2-104 196-304 (456)
102 3lvq_E ARF-GAP with SH3 domain 99.7 4.9E-16 1.7E-20 116.9 11.3 90 2-102 323-412 (497)
103 3kkq_A RAS-related protein M-R 99.7 7.8E-16 2.7E-20 101.0 10.9 82 2-91 19-102 (183)
104 3pqc_A Probable GTP-binding pr 99.7 1E-15 3.5E-20 101.0 11.2 101 2-105 24-132 (195)
105 1c1y_A RAS-related protein RAP 99.7 4.7E-16 1.6E-20 100.2 9.3 82 2-91 4-87 (167)
106 3geh_A MNME, tRNA modification 99.7 6.2E-17 2.1E-21 121.4 5.8 91 2-92 225-317 (462)
107 3oes_A GTPase rhebl1; small GT 99.7 6.8E-16 2.3E-20 103.2 10.2 94 2-104 25-120 (201)
108 1mky_A Probable GTP-binding pr 99.7 5.2E-16 1.8E-20 115.5 10.6 90 2-91 181-276 (439)
109 1svi_A GTP-binding protein YSX 99.7 6.7E-16 2.3E-20 102.3 10.1 87 2-91 24-118 (195)
110 2yc2_C IFT27, small RAB-relate 99.7 7.7E-17 2.6E-21 107.6 5.6 83 2-91 21-109 (208)
111 4djt_A GTP-binding nuclear pro 99.7 3.8E-16 1.3E-20 105.4 9.0 83 2-91 12-97 (218)
112 3cbq_A GTP-binding protein REM 99.7 4.4E-16 1.5E-20 104.1 9.2 84 2-91 24-109 (195)
113 2atv_A RERG, RAS-like estrogen 99.7 9.6E-16 3.3E-20 102.0 10.7 81 2-91 29-111 (196)
114 2erx_A GTP-binding protein DI- 99.7 1.3E-15 4.6E-20 98.4 10.7 82 2-91 4-87 (172)
115 3qq5_A Small GTP-binding prote 99.7 2.4E-16 8.1E-21 117.1 7.7 104 2-106 35-140 (423)
116 3con_A GTPase NRAS; structural 99.7 1.5E-15 5.1E-20 100.3 10.8 82 2-91 22-105 (190)
117 2q3h_A RAS homolog gene family 99.6 8.7E-16 3E-20 102.3 9.5 82 2-91 21-104 (201)
118 2ce2_X GTPase HRAS; signaling 99.6 1.9E-15 6.4E-20 96.9 10.1 82 2-91 4-87 (166)
119 3c5c_A RAS-like protein 12; GD 99.6 2.5E-15 8.7E-20 99.5 10.7 81 2-91 22-104 (187)
120 3reg_A RHO-like small GTPase; 99.6 1.5E-15 5.1E-20 100.8 9.5 82 2-91 24-107 (194)
121 1mh1_A RAC1; GTP-binding, GTPa 99.6 1.9E-15 6.4E-20 99.0 9.8 82 2-91 6-89 (186)
122 4dkx_A RAS-related protein RAB 99.6 7E-16 2.4E-20 105.3 7.8 81 2-91 14-98 (216)
123 4gzl_A RAS-related C3 botulinu 99.6 1.6E-15 5.3E-20 101.9 9.4 82 2-91 31-114 (204)
124 3t1o_A Gliding protein MGLA; G 99.6 1.1E-15 3.7E-20 101.0 8.5 97 2-105 15-129 (198)
125 3ihw_A Centg3; RAS, centaurin, 99.6 3.5E-15 1.2E-19 98.8 10.9 86 2-102 21-108 (184)
126 2atx_A Small GTP binding prote 99.6 1.2E-15 4E-20 101.2 8.4 82 2-91 19-102 (194)
127 2gf0_A GTP-binding protein DI- 99.6 4.7E-15 1.6E-19 98.3 11.2 82 2-91 9-92 (199)
128 2j1l_A RHO-related GTP-binding 99.6 1.6E-15 5.5E-20 102.5 8.8 82 2-91 35-118 (214)
129 2f9l_A RAB11B, member RAS onco 99.6 5.7E-15 2E-19 98.6 11.1 83 2-91 6-90 (199)
130 2fh5_B SR-beta, signal recogni 99.6 5.1E-15 1.7E-19 99.6 10.8 80 2-91 8-91 (214)
131 2ged_A SR-beta, signal recogni 99.6 8E-16 2.7E-20 101.9 6.6 83 2-91 49-132 (193)
132 1jwy_B Dynamin A GTPase domain 99.6 4E-15 1.4E-19 105.7 10.6 44 47-90 130-179 (315)
133 2gco_A H9, RHO-related GTP-bin 99.6 2.5E-15 8.7E-20 100.5 9.0 82 2-91 26-109 (201)
134 2j0v_A RAC-like GTP-binding pr 99.6 2.2E-15 7.6E-20 101.2 8.8 82 2-91 10-93 (212)
135 2fv8_A H6, RHO-related GTP-bin 99.6 3.1E-15 1E-19 100.5 9.2 82 2-91 26-109 (207)
136 3gj0_A GTP-binding nuclear pro 99.6 6.9E-16 2.4E-20 104.5 5.8 83 2-91 16-100 (221)
137 2zej_A Dardarin, leucine-rich 99.6 7.3E-16 2.5E-20 101.8 5.8 95 1-102 2-103 (184)
138 3o47_A ADP-ribosylation factor 99.6 5.4E-15 1.9E-19 106.5 10.5 90 2-102 166-255 (329)
139 3t5d_A Septin-7; GTP-binding p 99.6 9.1E-15 3.1E-19 102.6 11.4 89 2-90 9-127 (274)
140 3bwd_D RAC-like GTP-binding pr 99.6 1E-15 3.5E-20 100.2 6.1 82 2-91 9-92 (182)
141 1m7b_A RND3/RHOE small GTP-bin 99.6 4.2E-15 1.4E-19 98.0 8.7 82 2-91 8-91 (184)
142 1oix_A RAS-related protein RAB 99.6 1.4E-14 4.6E-19 96.5 11.0 83 2-91 30-114 (191)
143 3q3j_B RHO-related GTP-binding 99.6 6.2E-15 2.1E-19 99.8 9.3 82 2-91 28-111 (214)
144 2cxx_A Probable GTP-binding pr 99.6 3.4E-15 1.2E-19 98.2 7.6 87 1-91 1-95 (190)
145 3llu_A RAS-related GTP-binding 99.6 8.5E-15 2.9E-19 97.6 8.9 97 1-104 20-122 (196)
146 1gwn_A RHO-related GTP-binding 99.6 7.1E-15 2.4E-19 99.0 8.3 82 2-91 29-112 (205)
147 2aka_B Dynamin-1; fusion prote 99.6 5.2E-14 1.8E-18 99.1 12.5 90 2-91 27-175 (299)
148 3t34_A Dynamin-related protein 99.6 6.5E-14 2.2E-18 101.7 13.1 90 2-91 35-185 (360)
149 3j2k_7 ERF3, eukaryotic polype 99.6 4.2E-14 1.4E-18 105.4 11.8 83 2-91 18-131 (439)
150 1wb1_A Translation elongation 99.6 4.4E-14 1.5E-18 106.4 11.6 83 2-91 20-109 (482)
151 2wkq_A NPH1-1, RAS-related C3 99.5 3.5E-14 1.2E-18 100.9 10.0 82 2-91 156-239 (332)
152 3izq_1 HBS1P, elongation facto 99.5 3E-14 1E-18 110.0 10.2 82 2-90 168-280 (611)
153 3tr5_A RF-3, peptide chain rel 99.5 9.3E-15 3.2E-19 111.2 7.3 98 2-106 14-134 (528)
154 3p26_A Elongation factor 1 alp 99.5 4.6E-14 1.6E-18 106.2 10.7 83 2-91 34-147 (483)
155 1nrj_B SR-beta, signal recogni 99.5 2.1E-14 7.1E-19 96.8 7.7 80 1-89 12-93 (218)
156 2g3y_A GTP-binding protein GEM 99.5 1.4E-13 4.8E-18 93.5 11.6 84 2-91 38-124 (211)
157 3th5_A RAS-related C3 botulinu 99.3 9.4E-16 3.2E-20 102.6 0.0 82 2-91 31-114 (204)
158 2j69_A Bacterial dynamin-like 99.5 1.3E-14 4.5E-19 113.4 6.0 86 2-91 70-213 (695)
159 2cjw_A GTP-binding protein GEM 99.5 1.3E-13 4.5E-18 91.8 9.7 84 2-91 7-93 (192)
160 2qpt_A EH domain-containing pr 99.5 8.3E-14 2.8E-18 106.4 9.6 90 2-91 66-201 (550)
161 2c78_A Elongation factor TU-A; 99.5 1E-13 3.5E-18 102.2 9.3 98 2-106 12-127 (405)
162 3ec1_A YQEH GTPase; atnos1, at 99.5 1.6E-14 5.6E-19 105.5 4.5 84 2-88 163-255 (369)
163 2h5e_A Peptide chain release f 99.5 1.7E-13 5.9E-18 104.2 10.0 83 2-91 14-118 (529)
164 3dpu_A RAB family protein; roc 99.5 4.7E-14 1.6E-18 107.2 6.7 95 2-106 42-148 (535)
165 1zun_B Sulfate adenylate trans 99.5 5.7E-13 1.9E-17 99.0 12.2 83 2-91 25-140 (434)
166 3sjy_A Translation initiation 99.5 2.5E-13 8.6E-18 100.0 10.0 98 2-106 9-128 (403)
167 2elf_A Protein translation elo 99.5 1.5E-13 5E-18 100.6 8.6 88 3-106 23-111 (370)
168 3izy_P Translation initiation 99.5 6.3E-15 2.2E-19 112.2 1.4 84 1-91 4-88 (537)
169 1pui_A ENGB, probable GTP-bind 99.5 2.6E-13 8.9E-18 90.8 9.0 103 2-107 27-138 (210)
170 2xex_A Elongation factor G; GT 99.5 1.6E-13 5.6E-18 107.2 8.9 83 2-91 11-111 (693)
171 1d2e_A Elongation factor TU (E 99.5 5.7E-13 1.9E-17 98.0 10.8 83 2-91 4-102 (397)
172 2x2e_A Dynamin-1; nitration, h 99.4 1.5E-12 5E-17 94.5 12.3 25 2-26 32-56 (353)
173 1dar_A EF-G, elongation factor 99.4 5.5E-13 1.9E-17 104.2 10.4 83 2-91 13-113 (691)
174 1f60_A Elongation factor EEF1A 99.4 2.9E-13 9.8E-18 101.4 8.1 83 2-91 8-121 (458)
175 1jny_A EF-1-alpha, elongation 99.4 3.9E-13 1.3E-17 100.0 8.5 83 2-91 7-120 (435)
176 1kk1_A EIF2gamma; initiation o 99.4 2.1E-12 7E-17 95.3 12.2 83 2-91 11-119 (410)
177 1zo1_I IF2, translation initia 99.4 3.4E-14 1.2E-18 107.4 2.6 84 1-91 4-87 (501)
178 1r5b_A Eukaryotic peptide chai 99.4 3.7E-13 1.3E-17 101.0 7.5 83 2-91 44-157 (467)
179 3h2y_A GTPase family protein; 99.4 1.9E-13 6.4E-18 99.9 4.8 84 2-88 161-254 (368)
180 1puj_A YLQF, conserved hypothe 99.4 5.4E-13 1.9E-17 94.3 7.0 60 2-64 121-181 (282)
181 1s0u_A EIF-2-gamma, translatio 99.4 5.3E-12 1.8E-16 93.1 12.2 83 2-91 9-117 (408)
182 3r7w_B Gtpase2, GTP-binding pr 99.4 7.5E-13 2.6E-17 95.4 7.4 84 3-91 1-85 (331)
183 2rdo_7 EF-G, elongation factor 99.4 5.1E-12 1.7E-16 98.9 12.5 83 2-91 11-118 (704)
184 2ywe_A GTP-binding protein LEP 99.4 3.3E-12 1.1E-16 98.4 10.2 83 2-91 7-109 (600)
185 3zvr_A Dynamin-1; hydrolase, D 99.4 4.9E-12 1.7E-16 99.6 11.2 25 2-26 52-76 (772)
186 1f5n_A Interferon-induced guan 99.4 4.7E-12 1.6E-16 97.4 10.4 60 2-62 39-105 (592)
187 3mca_A HBS1, elongation factor 99.3 1.3E-13 4.4E-18 106.1 1.4 83 2-91 178-291 (592)
188 1g7s_A Translation initiation 99.3 2.7E-12 9.2E-17 98.9 8.7 83 2-91 6-106 (594)
189 1n0u_A EF-2, elongation factor 99.3 3E-12 1E-16 101.9 8.9 83 2-91 20-134 (842)
190 3cb4_D GTP-binding protein LEP 99.3 6.9E-12 2.3E-16 96.7 9.1 83 2-91 5-107 (599)
191 2qag_A Septin-2, protein NEDD5 99.3 1.5E-11 5.1E-16 89.6 10.1 60 2-61 38-108 (361)
192 3vqt_A RF-3, peptide chain rel 99.3 2E-11 6.8E-16 93.3 11.2 99 3-108 33-154 (548)
193 2dy1_A Elongation factor G; tr 99.3 3.5E-11 1.2E-15 93.7 12.3 97 2-105 10-125 (665)
194 3avx_A Elongation factor TS, e 99.3 1.7E-11 5.9E-16 99.9 10.4 83 2-91 297-395 (1289)
195 3cnl_A YLQF, putative uncharac 99.2 6.7E-12 2.3E-16 87.9 4.6 58 2-62 100-158 (262)
196 3c5h_A Glucocorticoid receptor 99.2 2.3E-12 7.8E-17 89.6 1.7 23 2-24 20-51 (255)
197 2www_A Methylmalonic aciduria 99.2 3.7E-12 1.3E-16 92.4 2.7 22 2-23 75-96 (349)
198 3j25_A Tetracycline resistance 99.1 4.7E-11 1.6E-15 92.6 5.0 99 3-108 4-121 (638)
199 3p32_A Probable GTPase RV1496/ 99.0 5E-10 1.7E-14 81.2 6.4 35 46-90 170-204 (355)
200 2p67_A LAO/AO transport system 99.0 5.8E-10 2E-14 80.5 6.6 36 46-91 147-182 (341)
201 3q5d_A Atlastin-1; G protein, 99.0 1.4E-09 4.7E-14 81.3 8.5 95 3-98 69-190 (447)
202 4fn5_A EF-G 1, elongation fact 99.0 5.1E-09 1.8E-13 82.1 11.7 98 3-107 15-138 (709)
203 2qag_C Septin-7; cell cycle, c 98.9 1.1E-08 3.7E-13 75.9 10.3 60 2-61 32-101 (418)
204 2qm8_A GTPase/ATPase; G protei 98.9 3E-09 1E-13 76.8 6.8 21 3-23 57-77 (337)
205 2j37_W Signal recognition part 98.9 5.1E-09 1.7E-13 79.3 7.5 92 3-97 103-232 (504)
206 2qag_B Septin-6, protein NEDD5 98.9 2.9E-08 1E-12 73.8 10.8 59 2-61 43-108 (427)
207 2qnr_A Septin-2, protein NEDD5 98.8 6.6E-09 2.3E-13 73.9 6.2 58 2-59 19-87 (301)
208 4fid_A G protein alpha subunit 98.8 1.1E-07 3.9E-12 68.8 11.2 47 36-89 149-195 (340)
209 1tq4_A IIGP1, interferon-induc 98.7 2.9E-07 1E-11 68.2 11.1 94 3-104 71-173 (413)
210 3sop_A Neuronal-specific septi 98.7 8.8E-09 3E-13 72.3 2.7 60 2-61 3-73 (270)
211 1yrb_A ATP(GTP)binding protein 98.6 1.1E-07 3.7E-12 65.5 7.4 42 48-91 109-150 (262)
212 2wsm_A Hydrogenase expression/ 98.6 2.4E-08 8.3E-13 67.1 3.0 23 2-24 31-53 (221)
213 3ohm_A Guanine nucleotide-bind 98.6 8.4E-07 2.9E-11 63.9 10.6 46 37-89 156-201 (327)
214 2v3c_C SRP54, signal recogniti 98.4 1.9E-07 6.6E-12 69.5 4.4 87 3-92 101-224 (432)
215 2rcn_A Probable GTPase ENGC; Y 98.4 1.6E-07 5.6E-12 68.3 3.6 56 3-61 217-281 (358)
216 1t9h_A YLOQ, probable GTPase E 98.4 1.4E-07 4.9E-12 67.3 2.4 54 3-60 175-236 (307)
217 3szr_A Interferon-induced GTP- 98.3 9.5E-07 3.3E-11 68.2 6.7 24 2-25 46-69 (608)
218 2yv5_A YJEQ protein; hydrolase 98.3 7.1E-07 2.4E-11 63.4 5.2 53 3-59 167-227 (302)
219 3dm5_A SRP54, signal recogniti 98.3 3E-06 1E-10 63.3 8.1 47 47-96 182-230 (443)
220 1u0l_A Probable GTPase ENGC; p 98.2 8E-07 2.7E-11 63.0 4.1 24 3-26 171-194 (301)
221 3tif_A Uncharacterized ABC tra 98.2 1.2E-06 4.2E-11 60.1 4.6 23 3-25 33-55 (235)
222 3ney_A 55 kDa erythrocyte memb 98.2 3.4E-07 1.2E-11 61.6 1.5 52 3-56 21-74 (197)
223 2pcj_A ABC transporter, lipopr 98.2 1.5E-06 5.2E-11 59.2 4.5 23 3-25 32-54 (224)
224 3kl4_A SRP54, signal recogniti 98.2 4.2E-06 1.5E-10 62.3 7.1 20 3-22 99-118 (433)
225 2yhs_A FTSY, cell division pro 98.2 3.2E-06 1.1E-10 63.9 6.5 21 3-23 295-315 (503)
226 2onk_A Molybdate/tungstate ABC 98.2 1.9E-06 6.6E-11 59.4 4.7 23 3-25 26-48 (240)
227 3gfo_A Cobalt import ATP-bindi 98.2 1.9E-06 6.5E-11 60.6 4.6 23 3-25 36-58 (275)
228 1b0u_A Histidine permease; ABC 98.2 2E-06 6.9E-11 59.9 4.6 23 3-25 34-56 (262)
229 3e70_C DPA, signal recognition 98.2 5.7E-06 1.9E-10 59.5 7.0 22 3-24 131-152 (328)
230 1g6h_A High-affinity branched- 98.2 2.1E-06 7.1E-11 59.7 4.6 23 3-25 35-57 (257)
231 1ye8_A Protein THEP1, hypothet 98.1 1.2E-06 4.1E-11 57.8 3.0 24 2-25 1-24 (178)
232 1ji0_A ABC transporter; ATP bi 98.1 2.4E-06 8.1E-11 58.8 4.6 23 3-25 34-56 (240)
233 1rj9_A FTSY, signal recognitio 98.1 1.8E-05 6.2E-10 56.3 9.2 21 3-23 104-124 (304)
234 2olj_A Amino acid ABC transpor 98.1 2.4E-06 8.3E-11 59.7 4.4 23 3-25 52-74 (263)
235 4g1u_C Hemin import ATP-bindin 98.1 2E-06 6.7E-11 60.2 3.8 23 3-25 39-61 (266)
236 2ff7_A Alpha-hemolysin translo 98.1 2.7E-06 9.4E-11 58.8 4.4 23 3-25 37-59 (247)
237 1sgw_A Putative ABC transporte 98.1 3.8E-06 1.3E-10 57.0 5.0 23 3-25 37-59 (214)
238 2cbz_A Multidrug resistance-as 98.1 4.7E-06 1.6E-10 57.2 5.5 23 3-25 33-55 (237)
239 2d2e_A SUFC protein; ABC-ATPas 98.1 4.9E-06 1.7E-10 57.5 5.4 37 3-48 31-67 (250)
240 2ihy_A ABC transporter, ATP-bi 98.1 3.5E-06 1.2E-10 59.3 4.6 23 3-25 49-71 (279)
241 1vpl_A ABC transporter, ATP-bi 98.1 4.3E-06 1.5E-10 58.2 5.0 23 3-25 43-65 (256)
242 2ixe_A Antigen peptide transpo 98.1 3.6E-06 1.2E-10 59.0 4.4 23 3-25 47-69 (271)
243 2yz2_A Putative ABC transporte 98.1 3.9E-06 1.3E-10 58.6 4.6 23 3-25 35-57 (266)
244 1mv5_A LMRA, multidrug resista 98.1 2.6E-06 8.9E-11 58.7 3.7 24 3-26 30-53 (243)
245 2qi9_C Vitamin B12 import ATP- 98.1 5.5E-06 1.9E-10 57.4 5.1 23 3-25 28-50 (249)
246 2pze_A Cystic fibrosis transme 98.1 8.9E-06 3E-10 55.5 6.0 23 3-25 36-58 (229)
247 3nh6_A ATP-binding cassette SU 98.0 2.7E-06 9.4E-11 60.7 3.2 23 3-25 82-104 (306)
248 1vma_A Cell division protein F 98.0 9.2E-06 3.1E-10 57.9 5.8 21 3-23 106-126 (306)
249 3fvq_A Fe(3+) IONS import ATP- 98.0 6.4E-06 2.2E-10 60.0 5.1 37 3-50 32-68 (359)
250 3tui_C Methionine import ATP-b 98.0 5.6E-06 1.9E-10 60.5 4.7 23 3-25 56-78 (366)
251 2zu0_C Probable ATP-dependent 98.0 7.9E-06 2.7E-10 57.1 5.1 22 3-24 48-69 (267)
252 1g29_1 MALK, maltose transport 98.0 9.1E-06 3.1E-10 59.4 5.5 37 3-50 31-67 (372)
253 1lvg_A Guanylate kinase, GMP k 98.0 3.2E-06 1.1E-10 56.3 2.6 22 3-24 6-27 (198)
254 1znw_A Guanylate kinase, GMP k 98.0 3.8E-06 1.3E-10 56.2 2.7 23 3-25 22-44 (207)
255 1z47_A CYSA, putative ABC-tran 98.0 8.5E-06 2.9E-10 59.2 4.7 23 3-25 43-65 (355)
256 2yyz_A Sugar ABC transporter, 97.9 8.7E-06 3E-10 59.3 4.7 23 3-25 31-53 (359)
257 2it1_A 362AA long hypothetical 97.9 9.3E-06 3.2E-10 59.2 4.7 23 3-25 31-53 (362)
258 4ido_A Atlastin-1; GTPase, GTP 97.9 4.3E-05 1.5E-09 57.2 8.3 95 3-98 69-190 (457)
259 1j8m_F SRP54, signal recogniti 97.9 2.5E-05 8.6E-10 55.4 6.8 52 46-98 179-232 (297)
260 3rlf_A Maltose/maltodextrin im 97.9 9.5E-06 3.2E-10 59.5 4.7 23 3-25 31-53 (381)
261 1kgd_A CASK, peripheral plasma 97.9 4.5E-06 1.5E-10 54.7 2.7 22 3-24 7-28 (180)
262 1oxx_K GLCV, glucose, ABC tran 97.9 6.7E-06 2.3E-10 59.7 3.6 37 3-50 33-69 (353)
263 1v43_A Sugar-binding transport 97.9 1.1E-05 3.8E-10 59.0 4.7 23 3-25 39-61 (372)
264 1ex7_A Guanylate kinase; subst 97.9 2.1E-06 7.3E-11 57.1 0.8 40 3-42 3-44 (186)
265 3tr0_A Guanylate kinase, GMP k 97.9 5.1E-06 1.7E-10 54.9 2.7 22 3-24 9-30 (205)
266 2ghi_A Transport protein; mult 97.9 1.2E-05 4.1E-10 56.0 4.5 23 3-25 48-70 (260)
267 1zp6_A Hypothetical protein AT 97.9 6.6E-06 2.2E-10 53.9 3.0 22 3-24 11-32 (191)
268 2bbs_A Cystic fibrosis transme 97.9 1.4E-05 4.7E-10 56.6 4.8 23 3-25 66-88 (290)
269 2if2_A Dephospho-COA kinase; a 97.9 6.9E-06 2.4E-10 54.4 3.0 23 1-23 1-23 (204)
270 1cip_A Protein (guanine nucleo 97.9 3.1E-05 1.1E-09 56.2 6.7 50 35-91 180-229 (353)
271 3d31_A Sulfate/molybdate ABC t 97.9 8.4E-06 2.9E-10 59.1 3.6 23 3-25 28-50 (348)
272 3a00_A Guanylate kinase, GMP k 97.9 6.1E-06 2.1E-10 54.2 2.6 23 3-25 3-25 (186)
273 1z6g_A Guanylate kinase; struc 97.9 6.8E-06 2.3E-10 55.5 2.7 23 3-25 25-47 (218)
274 1s96_A Guanylate kinase, GMP k 97.8 7.7E-06 2.6E-10 55.6 2.7 23 3-25 18-40 (219)
275 3c8u_A Fructokinase; YP_612366 97.8 6.9E-06 2.4E-10 54.9 2.4 22 3-24 24-45 (208)
276 2f1r_A Molybdopterin-guanine d 97.8 2.3E-06 7.8E-11 56.2 -0.1 23 2-24 3-25 (171)
277 1zcb_A G alpha I/13; GTP-bindi 97.8 3.6E-05 1.2E-09 56.1 6.2 48 36-90 189-236 (362)
278 3kb2_A SPBC2 prophage-derived 97.8 1.2E-05 4E-10 51.6 3.2 23 1-23 1-23 (173)
279 4gp7_A Metallophosphoesterase; 97.8 1.1E-05 3.6E-10 52.5 3.0 20 3-22 11-30 (171)
280 2xxa_A Signal recognition part 97.8 4.2E-05 1.5E-09 56.9 6.3 47 46-95 182-230 (433)
281 1zu4_A FTSY; GTPase, signal re 97.8 8.9E-05 3E-09 53.1 7.8 20 3-22 107-126 (320)
282 2hf9_A Probable hydrogenase ni 97.8 1.2E-05 4.3E-10 53.8 3.1 23 2-24 39-61 (226)
283 1htw_A HI0065; nucleotide-bind 97.8 1.2E-05 4E-10 52.1 2.7 23 3-25 35-57 (158)
284 2nq2_C Hypothetical ABC transp 97.8 1.3E-05 4.5E-10 55.5 3.0 23 3-25 33-55 (253)
285 2bbw_A Adenylate kinase 4, AK4 97.8 1.8E-05 6.1E-10 54.1 3.6 24 2-25 28-54 (246)
286 3b60_A Lipid A export ATP-bind 97.8 2.1E-05 7.3E-10 60.3 4.4 23 3-25 371-393 (582)
287 1nks_A Adenylate kinase; therm 97.8 1.6E-05 5.6E-10 51.7 3.2 23 1-23 1-23 (194)
288 3b5x_A Lipid A export ATP-bind 97.8 2.3E-05 8E-10 60.1 4.4 24 3-26 371-394 (582)
289 1azs_C GS-alpha; complex (lyas 97.8 0.00015 5.3E-09 53.5 8.6 74 38-118 207-290 (402)
290 3asz_A Uridine kinase; cytidin 97.7 1.5E-05 5.2E-10 53.0 2.7 22 3-24 8-29 (211)
291 1kag_A SKI, shikimate kinase I 97.7 1.7E-05 5.7E-10 51.1 2.8 23 2-24 5-27 (173)
292 3b85_A Phosphate starvation-in 97.7 1.1E-05 3.6E-10 54.5 1.9 22 3-24 24-45 (208)
293 1jjv_A Dephospho-COA kinase; P 97.7 2.2E-05 7.4E-10 52.1 3.4 22 2-23 3-24 (206)
294 4a82_A Cystic fibrosis transme 97.7 2E-05 6.9E-10 60.4 3.6 23 3-25 369-391 (578)
295 2pjz_A Hypothetical protein ST 97.7 2E-05 7E-10 54.9 3.3 23 3-25 32-54 (263)
296 2bdt_A BH3686; alpha-beta prot 97.7 1.7E-05 5.7E-10 52.0 2.7 21 3-23 4-24 (189)
297 2i3b_A HCR-ntpase, human cance 97.7 1.6E-05 5.5E-10 52.8 2.6 22 3-24 3-24 (189)
298 2v9p_A Replication protein E1; 97.7 1.8E-05 6.2E-10 56.4 2.8 22 3-24 128-149 (305)
299 2yl4_A ATP-binding cassette SU 97.7 2.1E-05 7E-10 60.5 3.2 23 3-25 372-394 (595)
300 3tau_A Guanylate kinase, GMP k 97.7 2E-05 6.7E-10 52.8 2.8 23 3-25 10-32 (208)
301 2j41_A Guanylate kinase; GMP, 97.7 1.9E-05 6.3E-10 52.2 2.6 23 3-25 8-30 (207)
302 2eyu_A Twitching motility prot 97.7 1.9E-05 6.5E-10 55.0 2.7 22 3-24 27-48 (261)
303 3qf4_B Uncharacterized ABC tra 97.7 2.4E-05 8.4E-10 60.2 3.5 23 3-25 383-405 (598)
304 4eun_A Thermoresistant glucoki 97.7 2.1E-05 7.3E-10 52.1 2.7 21 3-23 31-51 (200)
305 3gd7_A Fusion complex of cysti 97.6 4.8E-05 1.6E-09 55.9 4.5 23 3-25 49-71 (390)
306 1cke_A CK, MSSA, protein (cyti 97.6 2.9E-05 9.9E-10 52.1 3.1 22 2-23 6-27 (227)
307 3qf4_A ABC transporter, ATP-bi 97.6 3.1E-05 1.1E-09 59.6 3.5 23 3-25 371-393 (587)
308 3t61_A Gluconokinase; PSI-biol 97.6 3.1E-05 1.1E-09 51.2 3.1 22 2-23 19-40 (202)
309 2ehv_A Hypothetical protein PH 97.6 3.2E-05 1.1E-09 52.3 3.1 20 3-22 32-51 (251)
310 3aez_A Pantothenate kinase; tr 97.6 2.7E-05 9.2E-10 55.6 2.7 21 3-23 92-112 (312)
311 3lnc_A Guanylate kinase, GMP k 97.6 1.8E-05 6.2E-10 53.6 1.7 23 3-25 29-52 (231)
312 3lw7_A Adenylate kinase relate 97.6 4.2E-05 1.4E-09 48.8 3.2 20 2-21 2-21 (179)
313 1np6_A Molybdopterin-guanine d 97.6 4.6E-05 1.6E-09 50.0 3.5 23 2-24 7-29 (174)
314 4a74_A DNA repair and recombin 97.6 2.9E-05 1E-09 51.9 2.5 21 3-23 27-47 (231)
315 1knq_A Gluconate kinase; ALFA/ 97.6 3.6E-05 1.2E-09 49.7 2.8 21 3-23 10-30 (175)
316 2qor_A Guanylate kinase; phosp 97.6 3.8E-05 1.3E-09 51.0 3.0 22 3-24 14-35 (204)
317 1ly1_A Polynucleotide kinase; 97.6 5.1E-05 1.8E-09 48.9 3.5 21 3-23 4-24 (181)
318 1lw7_A Transcriptional regulat 97.6 2.8E-05 9.7E-10 56.3 2.4 23 3-25 172-194 (365)
319 2ffh_A Protein (FFH); SRP54, s 97.6 0.00024 8.3E-09 52.8 7.4 48 46-96 179-228 (425)
320 2jaq_A Deoxyguanosine kinase; 97.6 4.9E-05 1.7E-09 49.9 3.3 22 2-23 1-22 (205)
321 1via_A Shikimate kinase; struc 97.6 4.4E-05 1.5E-09 49.4 3.0 22 1-22 4-25 (175)
322 3uie_A Adenylyl-sulfate kinase 97.6 3.7E-05 1.3E-09 50.9 2.7 21 3-23 27-47 (200)
323 2jeo_A Uridine-cytidine kinase 97.5 3.8E-05 1.3E-09 52.6 2.7 21 3-23 27-47 (245)
324 3fb4_A Adenylate kinase; psych 97.5 5.5E-05 1.9E-09 50.4 3.3 21 2-22 1-21 (216)
325 3vaa_A Shikimate kinase, SK; s 97.5 6.2E-05 2.1E-09 49.8 3.5 21 2-22 26-46 (199)
326 3dl0_A Adenylate kinase; phosp 97.5 6.3E-05 2.2E-09 50.2 3.3 21 2-22 1-21 (216)
327 4f4c_A Multidrug resistance pr 97.5 3.2E-05 1.1E-09 64.4 2.2 23 3-25 1107-1129(1321)
328 2pt7_A CAG-ALFA; ATPase, prote 97.5 5.2E-05 1.8E-09 54.5 2.7 23 3-25 173-195 (330)
329 3jvv_A Twitching mobility prot 97.5 5.2E-05 1.8E-09 55.1 2.6 22 3-24 125-146 (356)
330 2qt1_A Nicotinamide riboside k 97.5 7.7E-05 2.6E-09 49.5 3.2 23 2-24 22-44 (207)
331 2gza_A Type IV secretion syste 97.5 6E-05 2E-09 54.7 2.9 23 3-25 177-199 (361)
332 1zd8_A GTP:AMP phosphotransfer 97.5 8.1E-05 2.8E-09 50.2 3.4 22 1-22 7-28 (227)
333 1kht_A Adenylate kinase; phosp 97.5 9E-05 3.1E-09 48.1 3.5 22 2-23 4-25 (192)
334 1e6c_A Shikimate kinase; phosp 97.5 8.2E-05 2.8E-09 47.7 3.2 23 1-23 2-24 (173)
335 3b9q_A Chloroplast SRP recepto 97.5 5.8E-05 2E-09 53.6 2.7 21 3-23 102-122 (302)
336 3ozx_A RNAse L inhibitor; ATP 97.5 0.00011 3.7E-09 56.1 4.3 24 3-26 296-319 (538)
337 4e22_A Cytidylate kinase; P-lo 97.4 9.2E-05 3.1E-09 51.0 3.6 21 2-22 28-48 (252)
338 1sq5_A Pantothenate kinase; P- 97.4 5.8E-05 2E-09 53.5 2.6 21 3-23 82-102 (308)
339 2pt5_A Shikimate kinase, SK; a 97.4 9.8E-05 3.3E-09 47.2 3.3 22 2-23 1-22 (168)
340 3cm0_A Adenylate kinase; ATP-b 97.4 8.9E-05 3E-09 48.2 3.2 20 3-22 6-25 (186)
341 3ozx_A RNAse L inhibitor; ATP 97.4 7.3E-05 2.5E-09 57.0 3.1 24 3-26 27-50 (538)
342 1e4v_A Adenylate kinase; trans 97.4 8.9E-05 3E-09 49.5 3.2 22 2-23 1-22 (214)
343 1aky_A Adenylate kinase; ATP:A 97.4 0.00011 3.6E-09 49.3 3.5 23 1-23 4-26 (220)
344 3ec2_A DNA replication protein 97.4 6.1E-05 2.1E-09 48.9 2.2 22 3-24 40-61 (180)
345 1zak_A Adenylate kinase; ATP:A 97.4 8.5E-05 2.9E-09 49.8 3.0 22 1-22 5-26 (222)
346 1yqt_A RNAse L inhibitor; ATP- 97.4 8.9E-05 3E-09 56.5 3.4 24 3-26 49-72 (538)
347 4f4c_A Multidrug resistance pr 97.4 0.00012 4E-09 61.1 4.2 23 3-25 446-468 (1321)
348 2vp4_A Deoxynucleoside kinase; 97.4 6.9E-05 2.3E-09 50.8 2.4 22 3-24 22-43 (230)
349 3trf_A Shikimate kinase, SK; a 97.4 0.00012 4.1E-09 47.6 3.5 21 2-22 6-26 (185)
350 2ewv_A Twitching motility prot 97.4 8E-05 2.7E-09 54.3 2.8 22 3-24 138-159 (372)
351 1qhx_A CPT, protein (chloramph 97.4 0.00012 4E-09 47.3 3.4 21 3-23 5-25 (178)
352 3be4_A Adenylate kinase; malar 97.4 0.00011 3.9E-09 49.2 3.4 22 1-22 5-26 (217)
353 1xjc_A MOBB protein homolog; s 97.4 0.00013 4.6E-09 47.7 3.5 23 1-23 4-26 (169)
354 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.00011 3.9E-09 50.7 3.3 23 1-23 4-26 (260)
355 3g5u_A MCG1178, multidrug resi 97.4 0.00013 4.5E-09 60.6 4.1 23 3-25 418-440 (1284)
356 3j16_B RLI1P; ribosome recycli 97.3 0.00013 4.6E-09 56.4 3.7 24 3-26 105-128 (608)
357 2plr_A DTMP kinase, probable t 97.3 0.00013 4.3E-09 48.2 3.2 22 2-23 5-26 (213)
358 1p9r_A General secretion pathw 97.3 8.9E-05 3E-09 55.0 2.6 22 3-24 169-190 (418)
359 2pbr_A DTMP kinase, thymidylat 97.3 0.00014 4.7E-09 47.3 3.3 22 2-23 1-22 (195)
360 2ze6_A Isopentenyl transferase 97.3 0.00014 4.6E-09 50.2 3.3 22 1-22 1-22 (253)
361 2rhm_A Putative kinase; P-loop 97.3 0.00013 4.5E-09 47.5 3.1 20 3-22 7-26 (193)
362 1rz3_A Hypothetical protein rb 97.3 0.0001 3.5E-09 48.9 2.6 21 3-23 24-44 (201)
363 1ukz_A Uridylate kinase; trans 97.3 0.00014 4.9E-09 47.9 3.3 21 2-22 16-36 (203)
364 2x8a_A Nuclear valosin-contain 97.3 0.0001 3.5E-09 51.5 2.6 21 4-24 47-67 (274)
365 2oap_1 GSPE-2, type II secreti 97.3 0.00011 3.7E-09 55.8 2.9 23 3-25 262-284 (511)
366 2c95_A Adenylate kinase 1; tra 97.3 0.00016 5.4E-09 47.2 3.3 21 2-22 10-30 (196)
367 2og2_A Putative signal recogni 97.3 0.00011 3.7E-09 53.5 2.7 21 3-23 159-179 (359)
368 2v54_A DTMP kinase, thymidylat 97.3 0.00016 5.6E-09 47.5 3.4 23 2-24 5-27 (204)
369 2npi_A Protein CLP1; CLP1-PCF1 97.3 9.6E-05 3.3E-09 55.4 2.4 23 3-25 140-162 (460)
370 3kta_A Chromosome segregation 97.3 0.00014 4.7E-09 47.2 2.9 21 3-23 28-48 (182)
371 2xb4_A Adenylate kinase; ATP-b 97.3 0.00016 5.5E-09 48.8 3.3 21 2-22 1-21 (223)
372 1gtv_A TMK, thymidylate kinase 97.3 5.4E-05 1.9E-09 50.2 1.0 21 3-23 2-22 (214)
373 2z0h_A DTMP kinase, thymidylat 97.3 0.00017 5.7E-09 47.1 3.3 22 2-23 1-22 (197)
374 3bk7_A ABC transporter ATP-bin 97.3 0.00014 4.7E-09 56.3 3.3 24 3-26 119-142 (607)
375 1y63_A LMAJ004144AAA protein; 97.3 0.00018 6.2E-09 47.0 3.4 23 2-24 11-33 (184)
376 3tqc_A Pantothenate kinase; bi 97.3 0.00014 4.6E-09 52.2 3.0 21 3-23 94-114 (321)
377 2cdn_A Adenylate kinase; phosp 97.3 0.00018 6.3E-09 47.4 3.4 22 2-23 21-42 (201)
378 2vli_A Antibiotic resistance p 97.3 0.00011 3.9E-09 47.5 2.2 21 2-22 6-26 (183)
379 1ak2_A Adenylate kinase isoenz 97.3 0.0002 6.8E-09 48.5 3.5 22 1-22 16-37 (233)
380 3sr0_A Adenylate kinase; phosp 97.3 0.00019 6.4E-09 48.3 3.3 21 2-22 1-21 (206)
381 1qf9_A UMP/CMP kinase, protein 97.3 0.00018 6.1E-09 46.7 3.1 21 2-22 7-27 (194)
382 2bwj_A Adenylate kinase 5; pho 97.3 0.0002 6.9E-09 46.8 3.3 22 2-23 13-34 (199)
383 3g5u_A MCG1178, multidrug resi 97.3 0.00017 5.8E-09 60.0 3.5 23 3-25 1061-1083(1284)
384 2wwf_A Thymidilate kinase, put 97.3 0.00019 6.4E-09 47.5 3.2 22 2-23 11-32 (212)
385 2iw3_A Elongation factor 3A; a 97.2 0.00017 5.9E-09 58.5 3.4 23 3-25 701-723 (986)
386 1yqt_A RNAse L inhibitor; ATP- 97.2 0.00022 7.5E-09 54.4 3.9 24 3-26 314-337 (538)
387 3euj_A Chromosome partition pr 97.2 0.00014 4.7E-09 54.9 2.7 22 3-24 31-52 (483)
388 2obl_A ESCN; ATPase, hydrolase 97.2 0.00015 5E-09 52.5 2.8 23 3-25 73-95 (347)
389 1tev_A UMP-CMP kinase; ploop, 97.2 0.00021 7.2E-09 46.4 3.3 21 2-22 4-24 (196)
390 1ixz_A ATP-dependent metallopr 97.2 0.00015 5.3E-09 49.5 2.7 21 4-24 52-72 (254)
391 2iyv_A Shikimate kinase, SK; t 97.2 0.00019 6.6E-09 46.6 3.0 21 2-22 3-23 (184)
392 3iij_A Coilin-interacting nucl 97.2 0.00021 7.1E-09 46.3 3.2 20 3-22 13-32 (180)
393 1nn5_A Similar to deoxythymidy 97.2 0.00021 7.2E-09 47.3 3.2 21 2-22 10-30 (215)
394 2kjq_A DNAA-related protein; s 97.2 9.2E-05 3.2E-09 47.2 1.3 22 3-24 38-59 (149)
395 1uf9_A TT1252 protein; P-loop, 97.2 0.00022 7.4E-09 46.8 3.2 23 2-24 9-31 (203)
396 3qf7_A RAD50; ABC-ATPase, ATPa 97.2 0.00018 6.3E-09 52.2 3.1 19 4-22 26-44 (365)
397 2yvu_A Probable adenylyl-sulfa 97.2 0.00021 7.3E-09 46.5 3.1 21 3-23 15-35 (186)
398 3tlx_A Adenylate kinase 2; str 97.2 0.00023 8E-09 48.7 3.3 21 2-22 30-50 (243)
399 2pez_A Bifunctional 3'-phospho 97.2 0.00023 7.7E-09 46.1 3.1 21 3-23 7-27 (179)
400 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00021 7.3E-09 47.6 3.0 21 3-23 25-45 (235)
401 1nij_A Hypothetical protein YJ 97.2 0.0001 3.5E-09 52.5 1.4 23 3-25 6-28 (318)
402 3bk7_A ABC transporter ATP-bin 97.2 0.00027 9.4E-09 54.6 3.9 24 3-26 384-407 (607)
403 1zuh_A Shikimate kinase; alpha 97.2 0.00027 9.4E-09 45.2 3.4 23 1-23 7-29 (168)
404 1cr0_A DNA primase/helicase; R 97.2 0.00019 6.4E-09 50.3 2.5 21 3-23 37-57 (296)
405 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.00027 9.1E-09 45.0 3.1 19 4-22 26-44 (149)
406 1in4_A RUVB, holliday junction 97.1 0.0002 7E-09 51.1 2.6 22 3-24 53-74 (334)
407 1iy2_A ATP-dependent metallopr 97.1 0.00022 7.6E-09 49.5 2.7 21 4-24 76-96 (278)
408 3j16_B RLI1P; ribosome recycli 97.1 0.0003 1E-08 54.4 3.7 24 3-26 380-403 (608)
409 1vht_A Dephospho-COA kinase; s 97.1 0.00031 1E-08 46.9 3.3 22 2-23 5-26 (218)
410 1odf_A YGR205W, hypothetical 3 97.1 0.00026 8.9E-09 50.0 2.8 21 2-22 32-52 (290)
411 2dpy_A FLII, flagellum-specifi 97.1 0.00025 8.5E-09 52.8 2.8 23 3-25 159-181 (438)
412 1gvn_B Zeta; postsegregational 97.1 0.00028 9.4E-09 49.6 2.5 21 3-23 35-55 (287)
413 1n0w_A DNA repair protein RAD5 97.0 0.00034 1.2E-08 47.0 2.7 21 3-23 26-46 (243)
414 3r20_A Cytidylate kinase; stru 97.0 0.0005 1.7E-08 47.2 3.5 21 2-22 10-30 (233)
415 3nwj_A ATSK2; P loop, shikimat 97.0 0.00038 1.3E-08 48.2 2.9 21 3-23 50-70 (250)
416 2f6r_A COA synthase, bifunctio 97.0 0.00042 1.5E-08 48.5 3.2 21 2-22 76-96 (281)
417 4eaq_A DTMP kinase, thymidylat 97.0 0.00042 1.4E-08 47.1 3.0 21 3-23 28-48 (229)
418 1m7g_A Adenylylsulfate kinase; 97.0 0.00042 1.4E-08 46.1 3.0 21 3-23 27-47 (211)
419 2xtz_A Guanine nucleotide-bind 97.0 0.0011 3.6E-08 48.2 5.3 36 47-89 182-217 (354)
420 2cvh_A DNA repair and recombin 97.0 0.00038 1.3E-08 46.1 2.7 21 3-23 22-42 (220)
421 1svm_A Large T antigen; AAA+ f 97.0 0.00036 1.2E-08 51.1 2.7 21 3-23 171-191 (377)
422 2p5t_B PEZT; postsegregational 97.0 0.00027 9.1E-09 48.6 1.9 22 2-23 33-54 (253)
423 1uj2_A Uridine-cytidine kinase 97.0 0.00051 1.8E-08 47.0 3.3 22 2-23 23-44 (252)
424 1ltq_A Polynucleotide kinase; 96.9 0.0006 2.1E-08 47.6 3.1 21 3-23 4-24 (301)
425 3ux8_A Excinuclease ABC, A sub 96.9 0.00043 1.5E-08 53.9 2.4 20 3-22 350-369 (670)
426 1jbk_A CLPB protein; beta barr 96.9 0.00071 2.4E-08 43.2 3.0 21 3-23 45-65 (195)
427 1qhl_A Protein (cell division 96.8 6.6E-05 2.3E-09 51.3 -2.1 21 4-24 30-50 (227)
428 2px0_A Flagellar biosynthesis 96.8 0.00053 1.8E-08 48.5 2.5 20 3-22 107-126 (296)
429 4dzz_A Plasmid partitioning pr 96.8 0.0088 3E-07 39.0 8.4 51 47-106 75-125 (206)
430 3qks_A DNA double-strand break 96.8 0.00074 2.5E-08 45.0 3.1 19 4-22 26-44 (203)
431 4b4t_L 26S protease subunit RP 96.8 0.0029 9.8E-08 47.2 6.5 21 3-23 217-237 (437)
432 1q3t_A Cytidylate kinase; nucl 96.8 0.00089 3E-08 45.3 3.4 22 2-23 17-38 (236)
433 2iw3_A Elongation factor 3A; a 96.8 0.0006 2E-08 55.4 2.9 22 3-24 463-484 (986)
434 4b4t_K 26S protease regulatory 96.8 0.0023 7.8E-08 47.6 5.8 21 3-23 208-228 (428)
435 1lv7_A FTSH; alpha/beta domain 96.8 0.00064 2.2E-08 46.4 2.7 21 3-23 47-67 (257)
436 1zcb_A G alpha I/13; GTP-bindi 96.8 0.00077 2.6E-08 49.0 3.2 22 1-22 33-54 (362)
437 3ake_A Cytidylate kinase; CMP 96.8 0.00092 3.2E-08 43.9 3.3 21 3-23 4-24 (208)
438 1nlf_A Regulatory protein REPA 96.8 0.00064 2.2E-08 47.2 2.5 21 3-23 32-52 (279)
439 1p5z_B DCK, deoxycytidine kina 96.8 0.00064 2.2E-08 46.8 2.5 23 2-24 25-47 (263)
440 2grj_A Dephospho-COA kinase; T 96.8 0.00093 3.2E-08 44.3 3.1 22 2-23 13-34 (192)
441 3gmt_A Adenylate kinase; ssgci 96.8 0.001 3.5E-08 45.6 3.3 21 2-22 9-29 (230)
442 1bif_A 6-phosphofructo-2-kinas 96.7 0.00092 3.2E-08 49.9 3.3 22 2-23 40-61 (469)
443 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.0045 1.5E-07 44.0 6.7 21 3-23 47-67 (322)
444 3l82_B F-box only protein 4; T 96.7 0.0021 7.1E-08 43.8 4.7 23 70-92 117-139 (227)
445 3umf_A Adenylate kinase; rossm 96.7 0.00098 3.4E-08 45.2 3.1 19 4-22 32-50 (217)
446 3cr8_A Sulfate adenylyltranfer 96.7 0.00046 1.6E-08 52.8 1.6 22 3-24 371-392 (552)
447 3qkt_A DNA double-strand break 96.7 0.001 3.6E-08 47.6 3.1 19 4-22 26-44 (339)
448 4b4t_M 26S protease regulatory 96.7 0.0037 1.2E-07 46.6 6.0 21 3-23 217-237 (434)
449 3bos_A Putative DNA replicatio 96.6 0.0012 4.1E-08 44.0 3.0 21 3-23 54-74 (242)
450 4aby_A DNA repair protein RECN 96.6 0.00029 1E-08 51.4 -0.1 20 3-22 62-81 (415)
451 4b4t_J 26S protease regulatory 96.6 0.0041 1.4E-07 45.9 5.9 21 3-23 184-204 (405)
452 1w1w_A Structural maintenance 96.6 0.001 3.4E-08 49.1 2.7 21 3-23 28-48 (430)
453 3zvl_A Bifunctional polynucleo 96.6 0.0013 4.5E-08 48.5 3.0 21 3-23 260-280 (416)
454 1tf7_A KAIC; homohexamer, hexa 96.6 0.0011 3.7E-08 50.3 2.5 19 3-21 41-59 (525)
455 2w58_A DNAI, primosome compone 96.5 0.0016 5.4E-08 42.8 3.0 22 2-23 55-76 (202)
456 1sxj_E Activator 1 40 kDa subu 96.5 0.0011 3.8E-08 47.1 2.3 20 4-23 39-58 (354)
457 2o5v_A DNA replication and rep 96.5 0.0015 5.2E-08 47.4 3.1 21 3-23 28-48 (359)
458 2p65_A Hypothetical protein PF 96.5 0.0011 3.9E-08 42.3 2.1 21 3-23 45-65 (187)
459 1pzn_A RAD51, DNA repair and r 96.5 0.0013 4.3E-08 47.5 2.5 22 3-24 133-154 (349)
460 1e69_A Chromosome segregation 96.5 0.00097 3.3E-08 47.4 1.8 20 3-22 26-45 (322)
461 2ocp_A DGK, deoxyguanosine kin 96.5 0.0019 6.5E-08 43.8 3.2 22 2-23 3-24 (241)
462 2dr3_A UPF0273 protein PH0284; 96.5 0.0017 5.9E-08 43.6 2.9 20 3-22 25-44 (247)
463 4b4t_I 26S protease regulatory 96.5 0.0079 2.7E-07 44.8 6.6 21 3-23 218-238 (437)
464 3b9p_A CG5977-PA, isoform A; A 96.4 0.0015 5.3E-08 45.4 2.6 21 3-23 56-76 (297)
465 1njg_A DNA polymerase III subu 96.4 0.002 6.7E-08 42.6 3.0 21 3-23 47-67 (250)
466 1tue_A Replication protein E1; 96.4 0.0014 4.8E-08 44.3 2.1 21 3-23 60-80 (212)
467 4b4t_H 26S protease regulatory 96.4 0.0062 2.1E-07 45.8 5.7 21 3-23 245-265 (467)
468 1fnn_A CDC6P, cell division co 96.4 0.0022 7.5E-08 45.9 3.2 21 3-23 46-66 (389)
469 2chg_A Replication factor C sm 96.4 0.0023 7.9E-08 41.8 3.0 21 3-23 40-60 (226)
470 4edh_A DTMP kinase, thymidylat 96.4 0.0023 7.9E-08 43.1 3.0 20 3-22 8-27 (213)
471 2qby_A CDC6 homolog 1, cell di 96.3 0.0018 6.3E-08 46.0 2.6 21 3-23 47-67 (386)
472 1ewq_A DNA mismatch repair pro 96.3 0.0018 6E-08 51.4 2.6 22 3-24 578-599 (765)
473 2h92_A Cytidylate kinase; ross 96.3 0.0027 9.2E-08 42.2 3.2 22 2-23 4-25 (219)
474 3h4m_A Proteasome-activating n 96.3 0.0023 8E-08 44.1 2.9 21 3-23 53-73 (285)
475 3cf0_A Transitional endoplasmi 96.3 0.0024 8.1E-08 44.9 2.9 22 3-24 51-72 (301)
476 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0026 8.9E-08 43.2 3.1 21 3-23 41-61 (262)
477 1wb9_A DNA mismatch repair pro 96.3 0.0019 6.7E-08 51.4 2.7 22 3-24 609-630 (800)
478 1sxj_C Activator 1 40 kDa subu 96.3 0.0021 7.1E-08 45.8 2.6 20 4-23 49-68 (340)
479 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0023 7.9E-08 46.5 2.8 21 3-23 26-46 (359)
480 3m6a_A ATP-dependent protease 96.2 0.0022 7.6E-08 48.9 2.6 21 3-23 110-130 (543)
481 3t15_A Ribulose bisphosphate c 96.2 0.0029 9.8E-08 44.4 2.9 21 3-23 38-58 (293)
482 3v9p_A DTMP kinase, thymidylat 96.2 0.002 6.7E-08 43.9 2.0 20 3-22 27-46 (227)
483 3lv8_A DTMP kinase, thymidylat 96.2 0.003 1E-07 43.3 2.8 20 3-22 29-48 (236)
484 1l8q_A Chromosomal replication 96.2 0.0031 1.1E-07 44.5 2.9 21 3-23 39-59 (324)
485 2dhr_A FTSH; AAA+ protein, hex 96.1 0.0026 9E-08 48.1 2.6 22 3-24 66-87 (499)
486 4fcw_A Chaperone protein CLPB; 96.1 0.0034 1.1E-07 43.7 3.0 21 3-23 49-69 (311)
487 3d3q_A TRNA delta(2)-isopenten 96.1 0.0034 1.2E-07 45.4 3.0 21 3-23 9-29 (340)
488 3ux8_A Excinuclease ABC, A sub 96.1 0.0027 9.3E-08 49.4 2.7 16 3-18 46-61 (670)
489 3vfd_A Spastin; ATPase, microt 96.1 0.012 4.2E-07 42.6 6.0 21 3-23 150-170 (389)
490 1tf7_A KAIC; homohexamer, hexa 96.1 0.0028 9.4E-08 48.0 2.6 22 3-24 283-304 (525)
491 3n70_A Transport activator; si 96.1 0.0039 1.3E-07 39.0 2.9 22 3-24 26-47 (145)
492 3crm_A TRNA delta(2)-isopenten 96.1 0.0037 1.3E-07 44.9 3.0 21 3-23 7-27 (323)
493 4ag6_A VIRB4 ATPase, type IV s 96.1 0.0036 1.2E-07 45.5 3.1 21 3-23 37-57 (392)
494 4tmk_A Protein (thymidylate ki 96.1 0.0037 1.3E-07 42.1 2.9 20 3-22 5-24 (213)
495 4i1u_A Dephospho-COA kinase; s 96.1 0.005 1.7E-07 41.5 3.5 23 1-23 9-31 (210)
496 3syl_A Protein CBBX; photosynt 96.1 0.0036 1.2E-07 43.6 2.9 21 3-23 69-89 (309)
497 1ofh_A ATP-dependent HSL prote 96.1 0.0039 1.3E-07 43.2 3.1 21 3-23 52-72 (310)
498 3ld9_A DTMP kinase, thymidylat 96.1 0.004 1.4E-07 42.3 3.0 20 3-22 23-42 (223)
499 2qmh_A HPR kinase/phosphorylas 96.1 0.0038 1.3E-07 42.0 2.8 22 3-24 36-57 (205)
500 3lda_A DNA repair protein RAD5 96.0 0.0036 1.2E-07 46.1 2.9 20 3-22 180-199 (400)
No 1
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-29 Score=184.87 Aligned_cols=118 Identities=58% Similarity=0.898 Sum_probs=107.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.+|+++|+||||||||||+|++.+..++++|++|++++.|.+.+.+.++.++||||+.+++++..++++++++.++.||+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 47999999999999999999999989999999999999999999999999999999999888888899999999999999
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHcCCcccCCCCceeeC
Q psy6249 82 VLMMLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFK 119 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (119)
+++|+|++++.++.+.+..||+.++..+.++++.+.++
T Consensus 153 il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~n 190 (376)
T 4a9a_A 153 LFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIK 190 (376)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEE
T ss_pred cccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhh
Confidence 99999999998899999999999999999998888764
No 2
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.88 E-value=1.2e-23 Score=153.44 Aligned_cols=104 Identities=26% Similarity=0.430 Sum_probs=84.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC-----------------eeEEEEeCCcccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG-----------------ANIQLLDLPGIIEGAAQ 64 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~DtpG~~~~~~~ 64 (119)
++|+++|.||||||||+|+|++....++++|++|..++.+.+.+.+ ..+++|||||+.+..+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 6899999999999999999998887788999999999999988765 47999999999887766
Q ss_pred cchHHHHHHHHhcCCCEEEEEEeCCC------------CchhHHHHHHHHHHc
Q psy6249 65 GKGRGRQVIAVARTADLVLMMLDATK------------QDVQRGLLEKELESV 105 (119)
Q Consensus 65 ~~~~~~~~~~~~~~~d~il~Vvd~~~------------~~~~~~~~~~~l~~~ 105 (119)
.++++.+++.+++++|++++|+|+++ +.++++.+..||..+
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~ 135 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALA 135 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhh
Confidence 66677788899999999999999985 356777777777543
No 3
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.87 E-value=2e-22 Score=146.20 Aligned_cols=117 Identities=27% Similarity=0.427 Sum_probs=99.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC-eeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG-ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
.+|+++|.||||||||+|+|++.+..+++++++|..++.+.+.+++ ..+.+|||||+.+..+.+.++..++++++..+|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 4699999999999999999999888888999999999999998876 789999999998877777778888999999999
Q ss_pred EEEEEEeCCC---C--chhHHHHHHHHHHcCCcccCCCCceee
Q psy6249 81 LVLMMLDATK---Q--DVQRGLLEKELESVGIRLNKKKPNIYF 118 (119)
Q Consensus 81 ~il~Vvd~~~---~--~~~~~~~~~~l~~~~~~~~~~~~~v~~ 118 (119)
++++|+|+++ . .++++.+.+++..+...+..+|-.+++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~ 281 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 281 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEE
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEE
Confidence 9999999976 2 456677778888887666565555443
No 4
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.86 E-value=3.5e-22 Score=146.13 Aligned_cols=103 Identities=27% Similarity=0.457 Sum_probs=86.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC---------------------CeeEEEEeCCccc
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK---------------------GANIQLLDLPGII 59 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~---------------------~~~~~~~DtpG~~ 59 (119)
|++|+++|.||||||||+|+|++....+++++++|..++.+...+. +..+.+|||||+.
T Consensus 1 ~~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 1 MLAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CCSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 6899999999999999999999876667889999999999987653 3579999999999
Q ss_pred ccccccchHHHHHHHHhcCCCEEEEEEeCCC------------CchhHHHHHHHHH
Q psy6249 60 EGAAQGKGRGRQVIAVARTADLVLMMLDATK------------QDVQRGLLEKELE 103 (119)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~------------~~~~~~~~~~~l~ 103 (119)
+..+..++++++++.+++.+|++++|+|+++ +.++++.+..||.
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~ 136 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELL 136 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHH
Confidence 8877777788889999999999999999985 3445666666664
No 5
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.85 E-value=2.9e-22 Score=147.53 Aligned_cols=104 Identities=20% Similarity=0.367 Sum_probs=66.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC-----------------eeEEEEeCCcccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG-----------------ANIQLLDLPGIIEGAAQ 64 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~DtpG~~~~~~~ 64 (119)
++|+++|+||||||||+|+|++....++++|++|..++.+.+.+.+ ..+.+|||||+....+.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~ 102 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHN 102 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccch
Confidence 5899999999999999999999887888999999999999887754 25999999999987776
Q ss_pred cchHHHHHHHHhcCCCEEEEEEeCCC------------CchhHHHHHHHHHHc
Q psy6249 65 GKGRGRQVIAVARTADLVLMMLDATK------------QDVQRGLLEKELESV 105 (119)
Q Consensus 65 ~~~~~~~~~~~~~~~d~il~Vvd~~~------------~~~~~~~~~~~l~~~ 105 (119)
+.+++.+++.+++++|++++|+|+++ |.++++.+..||..+
T Consensus 103 ~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~ 155 (396)
T 2ohf_A 103 GQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLK 155 (396)
T ss_dssp ----CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhh
Confidence 66677789999999999999999973 445666777666443
No 6
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.85 E-value=1.2e-21 Score=144.59 Aligned_cols=104 Identities=27% Similarity=0.405 Sum_probs=62.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE---------------------C---CeeEEEEeCCc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY---------------------K---GANIQLLDLPG 57 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~---------------------~---~~~~~~~DtpG 57 (119)
++|+++|.||||||||+|+|++.+..++++|++|..++.+...+ + ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999988877788999999999887432 2 25799999999
Q ss_pred ccccccccchHHHHHHHHhcCCCEEEEEEeCCC-------------CchhHHHHHHHHHHc
Q psy6249 58 IIEGAAQGKGRGRQVIAVARTADLVLMMLDATK-------------QDVQRGLLEKELESV 105 (119)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~-------------~~~~~~~~~~~l~~~ 105 (119)
+.+..+..+++..+++.+++.+|++++|+|+++ |.++++.+..||...
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~ 141 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYW 141 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHH
Confidence 987666555666777778899999999999986 356777788887655
No 7
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.84 E-value=1.7e-20 Score=131.14 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=77.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccc------cchHHHHHHH
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ------GKGRGRQVIA 74 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~------~~~~~~~~~~ 74 (119)
|++|+++|.+|||||||+|+|++....+++++++|.+...+.+.+++..+.+|||||....... ++.+...++.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 6899999999999999999999988888899999999999999999999999999998765431 1112222221
Q ss_pred HhcCCCEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 75 VARTADLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 75 ~~~~~d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
.+.+|++++|+|+++..+.. .+..++..
T Consensus 81 -~~~~d~vi~VvDas~~~~~~-~l~~~l~~ 108 (256)
T 3iby_A 81 -DLEYDCIINVIDACHLERHL-YLTSQLFE 108 (256)
T ss_dssp -HSCCSEEEEEEEGGGHHHHH-HHHHHHTT
T ss_pred -hCCCCEEEEEeeCCCchhHH-HHHHHHHH
Confidence 17899999999999853333 33334433
No 8
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.83 E-value=4.3e-20 Score=128.34 Aligned_cols=112 Identities=11% Similarity=0.126 Sum_probs=75.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCC--CceeeeeeeEEEECCeeEEEEeCCccccccccc-chHHHHH----HH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYE--FTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG-KGRGRQV----IA 74 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~-~~~~~~~----~~ 74 (119)
++|+++|.+|||||||+|+|++.+......+ ++|..+..+.+.+++..+.+|||||+.+..... ..+.... ..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~ 101 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLL 101 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHh
Confidence 5899999999999999999998887544432 477788888888999999999999987543322 2222222 23
Q ss_pred HhcCCCEEEEEEeCCCCch-hHHHHHHHHHHcCCcccCCC
Q psy6249 75 VARTADLVLMMLDATKQDV-QRGLLEKELESVGIRLNKKK 113 (119)
Q Consensus 75 ~~~~~d~il~Vvd~~~~~~-~~~~~~~~l~~~~~~~~~~~ 113 (119)
..+.+|++|+|+|++.... +...+....+.++..+.+.+
T Consensus 102 ~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ 141 (247)
T 3lxw_A 102 SAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWM 141 (247)
T ss_dssp HTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGE
T ss_pred cCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccE
Confidence 4499999999999986422 22333333455555544443
No 9
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=2.2e-19 Score=133.67 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=71.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccc--cchHHHHHHHHhc
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ--GKGRGRQVIAVAR 77 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~--~~~~~~~~~~~~~ 77 (119)
+++|+++|.||||||||+|+|++.+. .+++.+++|.+...+.+.+++..+.+|||||+...... ...+..++..+++
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 57899999999999999999998775 46788999999999999999999999999998653222 2235566777899
Q ss_pred CCCEEEEEEeCCCCchhH-HHHHHHHHH
Q psy6249 78 TADLVLMMLDATKQDVQR-GLLEKELES 104 (119)
Q Consensus 78 ~~d~il~Vvd~~~~~~~~-~~~~~~l~~ 104 (119)
+||++++|+|+++..... ..+.+.+..
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l~~ 108 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFLRK 108 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999999998753322 234444544
No 10
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.82 E-value=7.3e-20 Score=134.76 Aligned_cols=89 Identities=19% Similarity=0.377 Sum_probs=80.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECC-----------------eeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKG-----------------ANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~DtpG~~~~~~ 63 (119)
.+++++|+||||||||||+|++... .++++|++|..++.|.+.+.+ ..+.++|+||+..+.+
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s 100 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAS 100 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCc
Confidence 4799999999999999999999887 789999999999999998875 4689999999998877
Q ss_pred ccchHHHHHHHHhcCCCEEEEEEeCCC
Q psy6249 64 QGKGRGRQVIAVARTADLVLMMLDATK 90 (119)
Q Consensus 64 ~~~~~~~~~~~~~~~~d~il~Vvd~~~ 90 (119)
..++++..++.+++.+|++++|+|+++
T Consensus 101 ~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 101 TGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 777778889999999999999999975
No 11
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.80 E-value=4.6e-19 Score=124.87 Aligned_cols=93 Identities=20% Similarity=0.323 Sum_probs=74.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc--chHHHHHHH---Hh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG--KGRGRQVIA---VA 76 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~--~~~~~~~~~---~~ 76 (119)
++|+++|.+|||||||+|+|++....+++++++|.....+.+.+.+..+.+|||||..+..... ........+ ..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 83 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhh
Confidence 6899999999999999999999888888899999999999999888999999999987654211 112222222 23
Q ss_pred cCCCEEEEEEeCCCCchh
Q psy6249 77 RTADLVLMMLDATKQDVQ 94 (119)
Q Consensus 77 ~~~d~il~Vvd~~~~~~~ 94 (119)
+.+|++++|+|+++....
T Consensus 84 ~~~d~ii~VvD~~~~~~~ 101 (274)
T 3i8s_A 84 GDADLLINVVDASNLERN 101 (274)
T ss_dssp TCCSEEEEEEEGGGHHHH
T ss_pred cCCCEEEEEecCCChHHH
Confidence 799999999999986433
No 12
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.80 E-value=1.4e-18 Score=124.08 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc-cCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccch-HHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE-AASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKG-RGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~-~~~~~~~~~~~~ 79 (119)
.+|+++|.||||||||+|+|++.+.. ++..+++|.....+.+..++.++.+|||||+.+....... +...+..+++.+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~a 87 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 87 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcC
Confidence 37999999999999999999988763 5677888888777778788899999999998764332221 334466788999
Q ss_pred CEEEEEEeCCCCc
Q psy6249 80 DLVLMMLDATKQD 92 (119)
Q Consensus 80 d~il~Vvd~~~~~ 92 (119)
|++++|+|++++.
T Consensus 88 d~il~VvD~~~~~ 100 (301)
T 1wf3_A 88 NAVVWVVDLRHPP 100 (301)
T ss_dssp SEEEEEEETTSCC
T ss_pred CEEEEEEECCCCC
Confidence 9999999999863
No 13
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=2.1e-18 Score=110.91 Aligned_cols=104 Identities=21% Similarity=0.199 Sum_probs=71.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
+++|+++|.+|||||||+|++.+... .....+++|.......+..++..+.+|||||..............+..+++.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 57999999999999999999997764 34556677777777778888899999999998654322222344566678999
Q ss_pred CEEEEEEeCCCCchhH-HHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQR-GLLEKELES 104 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~-~~~~~~l~~ 104 (119)
|++++|+|++++.... ..+.+.+..
T Consensus 81 ~~~i~v~d~~~~~~~~~~~~~~~~~~ 106 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQADYEVAEYLRR 106 (161)
T ss_dssp SEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred CEEEEEEECCCcccHhHHHHHHHHHh
Confidence 9999999999863332 334444443
No 14
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.79 E-value=2e-18 Score=120.70 Aligned_cols=94 Identities=24% Similarity=0.331 Sum_probs=75.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc--chHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG--KGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~--~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++....+++++++|.....+.+..++..+.+|||||........ ..+...++.. ..+
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~~ 84 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK-GDA 84 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH-SCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh-cCC
Confidence 5899999999999999999999887788899999999999998889999999999987654322 1122333322 689
Q ss_pred CEEEEEEeCCCCchhHH
Q psy6249 80 DLVLMMLDATKQDVQRG 96 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~ 96 (119)
|++++|+|+++..+.+.
T Consensus 85 d~ii~V~D~t~~~~~~~ 101 (258)
T 3a1s_A 85 DLVILVADSVNPEQSLY 101 (258)
T ss_dssp SEEEEEEETTSCHHHHH
T ss_pred CEEEEEeCCCchhhHHH
Confidence 99999999998744433
No 15
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.79 E-value=1.4e-18 Score=114.16 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=70.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchH-HHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGR-GRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~-~~~~~~~~~~~ 79 (119)
.+|+++|.+|||||||+|+|++... .++.++++|.....+.+.+++..+.+|||||+.+.....+.. ....+.+++.+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~a 84 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA 84 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhC
Confidence 5899999999999999999998764 456677888887888888888899999999986532211111 11234567999
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 85 d~~i~v~D~~~~ 96 (172)
T 2gj8_A 85 DRVLFMVDGTTT 96 (172)
T ss_dssp SEEEEEEETTTC
T ss_pred CEEEEEEECCCC
Confidence 999999999986
No 16
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.78 E-value=4.3e-18 Score=118.40 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=73.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc-CCCCC-ceeeeeeeEEEECCeeEEEEeCCcccccccccchH----HHHHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA-ASYEF-TTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGR----GRQVIAV 75 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~-~~~~~-~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~----~~~~~~~ 75 (119)
++|+++|.+|||||||+|+|++..... ...+. +|.....+.+.+++..+.+|||||+.+.......+ ...+..+
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~ 102 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLS 102 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999877433 33333 67777777888889999999999987764433222 2334457
Q ss_pred hcCCCEEEEEEeCCCCchhHHHHHHHH
Q psy6249 76 ARTADLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 76 ~~~~d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
++.+|++++|+|++........+.+.+
T Consensus 103 ~~~~d~il~V~d~~~~~~~~~~~~~~l 129 (260)
T 2xtp_A 103 APGPHVLLLVTQLGRYTSQDQQAAQRV 129 (260)
T ss_dssp TTCCSEEEEEEETTCCCHHHHHHHHHH
T ss_pred CCCCcEEEEEEeCCCCCHHHHHHHHHH
Confidence 789999999999986333333343444
No 17
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.78 E-value=2.4e-18 Score=122.98 Aligned_cols=89 Identities=29% Similarity=0.306 Sum_probs=73.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcc-cCCCCCceeeeeeeEEEEC-CeeEEEEeCCccccccc--c-cchHHHHHHHHhc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSE-AASYEFTTLTCIPGVIEYK-GANIQLLDLPGIIEGAA--Q-GKGRGRQVIAVAR 77 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~-~~~~~~~t~~~~~~~~~~~-~~~~~~~DtpG~~~~~~--~-~~~~~~~~~~~~~ 77 (119)
.|+++|.||||||||+|+|++.+.. ++..+++|.....+....+ +.++.+|||||+.+... . ...+...+..+++
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~ 91 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLE 91 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhh
Confidence 6999999999999999999998864 6778889998888998888 89999999999976541 1 1123344556789
Q ss_pred CCCEEEEEEeCCCC
Q psy6249 78 TADLVLMMLDATKQ 91 (119)
Q Consensus 78 ~~d~il~Vvd~~~~ 91 (119)
.+|++++|+|+++.
T Consensus 92 ~aD~il~VvD~~~~ 105 (308)
T 3iev_A 92 EADVILFMIDATEG 105 (308)
T ss_dssp HCSEEEEEEETTTB
T ss_pred cCCEEEEEEeCCCC
Confidence 99999999999986
No 18
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.78 E-value=6.5e-18 Score=110.01 Aligned_cols=89 Identities=25% Similarity=0.366 Sum_probs=64.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc--chHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG--KGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~--~~~~~~~~~~~~~~ 79 (119)
.+|+++|++|||||||+|+|++....++.++++|.....+.+.+++..+.+|||||........ +.+...+++. .++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~-~~~ 82 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN-EKP 82 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHH-HCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhc-CCC
Confidence 5899999999999999999998776666777777778888888888999999999986643222 1122222211 479
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|+++.
T Consensus 83 ~~~i~v~D~~~~ 94 (165)
T 2wji_A 83 DLVVNIVDATAL 94 (165)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEecCCch
Confidence 999999999985
No 19
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.77 E-value=3.9e-18 Score=117.40 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=70.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCC--CceeeeeeeEEEECCeeEEEEeCCcccccccccchHH----HHHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYE--FTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRG----RQVIAV 75 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~----~~~~~~ 75 (119)
++|+++|.+|||||||+|+|++.....+..+ ++|..+....+.+++..+.+|||||+.+......+.. ..+...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 109 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLT 109 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999998877555544 6677778888888999999999999977644333222 233345
Q ss_pred hcCCCEEEEEEeCCCC-chhHHHHHHHHHHc
Q psy6249 76 ARTADLVLMMLDATKQ-DVQRGLLEKELESV 105 (119)
Q Consensus 76 ~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~ 105 (119)
.+.+|++++|+|++.. ..+...+...++.+
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~ 140 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMF 140 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999754 23334444444433
No 20
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.77 E-value=1.8e-18 Score=121.88 Aligned_cols=90 Identities=20% Similarity=0.331 Sum_probs=69.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc--chHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG--KGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~--~~~~~~~~~~~~~ 78 (119)
.++|+++|.||||||||+|+|++....+++++++|.....+.+.. +..+.+|||||........ +.+...++.. ..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~ 80 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS-QR 80 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT-TC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc-CC
Confidence 368999999999999999999998777888999998887777765 7889999999986543221 1222223222 47
Q ss_pred CCEEEEEEeCCCCc
Q psy6249 79 ADLVLMMLDATKQD 92 (119)
Q Consensus 79 ~d~il~Vvd~~~~~ 92 (119)
+|++++|+|+++..
T Consensus 81 ~d~vi~V~D~t~~e 94 (272)
T 3b1v_A 81 ADSILNVVDATNLE 94 (272)
T ss_dssp CSEEEEEEEGGGHH
T ss_pred CCEEEEEecCCchH
Confidence 99999999999863
No 21
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.76 E-value=5.3e-18 Score=110.78 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=67.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+........+..+.......+.+++ ..+.+|||||........ ..+++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~~ 82 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT-------STYYRGT 82 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCC-------GGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhH-------HHHhccC
Confidence 5899999999999999999998776555556666666667777777 678999999965433222 2467899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
|++++|+|++++ ..++.+..++
T Consensus 83 d~~i~v~d~~~~-~s~~~~~~~~ 104 (181)
T 3tw8_B 83 HGVIVVYDVTSA-ESFVNVKRWL 104 (181)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHH
T ss_pred CEEEEEEECCCH-HHHHHHHHHH
Confidence 999999999986 3334444333
No 22
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.76 E-value=9.4e-18 Score=117.68 Aligned_cols=94 Identities=21% Similarity=0.289 Sum_probs=74.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccc-h-HHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK-G-RGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~-~-~~~~~~~~~~~~ 79 (119)
++|+++|++|||||||+|+|++....+++.++.|.....+.+.+++..+.+|||||......... + +...++ ...++
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~-~~~~~ 82 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFI-LDGNA 82 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHH-HTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhh-hccCC
Confidence 58999999999999999999998877888899999999999999999999999999876443221 1 111121 22689
Q ss_pred CEEEEEEeCCCCchhHH
Q psy6249 80 DLVLMMLDATKQDVQRG 96 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~ 96 (119)
|++++|+|+++..+.+.
T Consensus 83 d~vi~v~D~~~~~~~~~ 99 (271)
T 3k53_A 83 DVIVDIVDSTCLMRNLF 99 (271)
T ss_dssp SEEEEEEEGGGHHHHHH
T ss_pred cEEEEEecCCcchhhHH
Confidence 99999999998644433
No 23
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.76 E-value=1.9e-17 Score=120.95 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=70.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc-chHHHHHHHHhcCCCE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG-KGRGRQVIAVARTADL 81 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~-~~~~~~~~~~~~~~d~ 81 (119)
.|+++|++|||||||+|+|++....+++.+++|.++..+.+.+++..+.++||||+....+.+ .+.....+..+..+|+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 499999999999999999998887677788999999999999999999999999986542222 1223445667899999
Q ss_pred EEEEEeCCCCc----hhHHHHHHHHHHc
Q psy6249 82 VLMMLDATKQD----VQRGLLEKELESV 105 (119)
Q Consensus 82 il~Vvd~~~~~----~~~~~~~~~l~~~ 105 (119)
+++|+|++++. ++...+.+.++.+
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l 288 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREI 288 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHh
Confidence 99999999863 2223344445544
No 24
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.76 E-value=1.6e-17 Score=113.41 Aligned_cols=90 Identities=21% Similarity=0.363 Sum_probs=66.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccc-hHHHH-HHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK-GRGRQ-VIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~-~~~~~-~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+++|.......+...+..+.+|||||..+...... ..... +..+...+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 109 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHIN 109 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccc
Confidence 68999999999999999999988766666777888888888888889999999999865433222 11122 23346889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 110 d~~i~v~d~~~~ 121 (228)
T 2qu8_A 110 GVILFIIDISEQ 121 (228)
T ss_dssp EEEEEEEETTCT
T ss_pred cEEEEEEecccc
Confidence 999999999986
No 25
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.76 E-value=9e-18 Score=111.31 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=64.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+........+..+.......+.+++ ..+.+|||||..... .....+++.+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 89 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 89 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC-------TTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHHHHhhC
Confidence 5899999999999999999998766555555566666667777776 568999999954322 1234567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 90 d~~i~v~d~~~~ 101 (196)
T 3tkl_A 90 HGIIVVYDVTDQ 101 (196)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 26
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.75 E-value=2.7e-18 Score=127.32 Aligned_cols=115 Identities=30% Similarity=0.443 Sum_probs=92.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC-eeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG-ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.|+++|+||||||||+|+|++....++.++++|..++.+.+.+++ ..+.++|+||+.+.......+...+++++..++.
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~ 238 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 238 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence 589999999999999999999888888899999999999998876 7899999999987655544455667778889999
Q ss_pred EEEEEeCC-CCchhHHHHHHHHHHcCCcccCCCCcee
Q psy6249 82 VLMMLDAT-KQDVQRGLLEKELESVGIRLNKKKPNIY 117 (119)
Q Consensus 82 il~Vvd~~-~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 117 (119)
+++|+|++ ++..++....+++..+...+..+|..++
T Consensus 239 lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILV 275 (416)
T 1udx_A 239 LLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA 275 (416)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred hhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEE
Confidence 99999997 4455667777777766655555555444
No 27
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=1.6e-17 Score=107.38 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=59.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+........+..+.......+.+++ ..+.+|||||..... ..+..+++++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 76 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-------SLAPXYYRNA 76 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh-------hhhhhhhccC
Confidence 5899999999999999999997664333333333334444555554 478999999954321 2244567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 77 d~~i~v~d~~~~ 88 (170)
T 1ek0_A 77 QAALVVYDVTKP 88 (170)
T ss_dssp SEEEEEEETTCH
T ss_pred cEEEEEEecCCh
Confidence 999999999986
No 28
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=1.6e-17 Score=111.47 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=63.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..+.......+.+++ ..+.+|||||....... +..+++.+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 93 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI-------TTAYYRGA 93 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC-------CHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH-------HHHHhccC
Confidence 5899999999999999999997765444444444455556666776 57899999996543222 24567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 94 d~ii~v~d~~~~ 105 (213)
T 3cph_A 94 MGIILVYDVTDE 105 (213)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 29
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.75 E-value=3.1e-17 Score=105.79 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=66.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|++.+.... .. .+|.......+..++..+.+|||||... +...+..+++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~d~ 70 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQG 70 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CC--CCCSSCCEEEEECSSCEEEEEECCCCGG-------GHHHHHHHTTTCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-cc--cCcCceeEEEEEECCEEEEEEEcCCChh-------hHHHHHHHhccCCE
Confidence 58999999999999999999865532 11 2344455556677788999999999643 22334457899999
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
+++|+|++++ ..++.+..++..
T Consensus 71 ~i~v~d~~~~-~s~~~~~~~~~~ 92 (164)
T 1r8s_A 71 LIFVVDSNDR-ERVNEAREELMR 92 (164)
T ss_dssp EEEEEETTCG-GGHHHHHHHHHH
T ss_pred EEEEEECCCH-HHHHHHHHHHHH
Confidence 9999999987 334444444433
No 30
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.75 E-value=1.2e-17 Score=109.86 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=63.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+........+..+.......+..++ ..+.+|||||... +...+..+++.+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 83 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER-------FRSVTRSYYRGA 83 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHHTTSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHHhcC
Confidence 5899999999999999999997765444444444455555666666 5789999999533 233455578999
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 84 d~~i~v~d~~~~ 95 (186)
T 2bme_A 84 AGALLVYDITSR 95 (186)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 31
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.74 E-value=2.1e-17 Score=108.95 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=65.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|++++.. ...+ .+|.......+.+++..+.+|||||..+.. ..+..+++++|+
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~--~~~~-~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d~ 88 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED--VDTI-SPTLGFNIKTLEHRGFKLNIWDVGGQKSLR-------SYWRNYFESTDG 88 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC--CSSC-CCCSSEEEEEEEETTEEEEEEEECCSHHHH-------TTGGGGCTTCSE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCcc-cccCccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCCE
Confidence 589999999999999999999766 2222 234455566677788999999999964321 122346789999
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l 102 (119)
+++|+|++++ ..++.+.+++
T Consensus 89 ii~v~d~~~~-~s~~~~~~~~ 108 (186)
T 1ksh_A 89 LIWVVDSADR-QRMQDCQREL 108 (186)
T ss_dssp EEEEEETTCG-GGHHHHHHHH
T ss_pred EEEEEECcCH-HHHHHHHHHH
Confidence 9999999987 3344444443
No 32
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=3.6e-17 Score=108.15 Aligned_cols=90 Identities=13% Similarity=0.178 Sum_probs=63.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|+|++.... . ..+|.+.....+.+++..+.+|||||..+... .+..+++++|+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 86 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVV-H--TSPTIGSNVEEIVINNTRFLMWDIGGQESLRS-------SWNTYYTNTEF 86 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCE-E--EECCSCSSCEEEEETTEEEEEEECCC----CG-------GGHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-c--CcCCCccceEEEEECCEEEEEEECCCCHhHHH-------HHHHHhcCCCE
Confidence 68999999999999999999976543 1 12244445566777889999999999754322 22356789999
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l 102 (119)
+++|+|++++ +.++.+..++
T Consensus 87 ii~v~d~~~~-~s~~~~~~~~ 106 (187)
T 1zj6_A 87 VIVVVDSTDR-ERISVTREEL 106 (187)
T ss_dssp EEEEEETTCT-TTHHHHHHHH
T ss_pred EEEEEeCCCH-HHHHHHHHHH
Confidence 9999999987 3344444444
No 33
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.74 E-value=7.4e-17 Score=106.51 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=65.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|++.+.... . ..+|.......+.+++..+.+|||||... +...+..+++.+|+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~--~-~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~~~ 86 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDIS--H-ITPTQGFNIKSVQSQGFKLNVWDIGGQRK-------IRPYWRSYFENTDI 86 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCE--E-EEEETTEEEEEEEETTEEEEEEECSSCGG-------GHHHHHHHHTTCSE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--c-ccCcCCeEEEEEEECCEEEEEEECCCCHH-------HHHHHHHHhCCCCE
Confidence 58999999999999999999976431 1 11222333345667788999999999533 23345567899999
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
+++|+|++++ ..++.+..++..
T Consensus 87 ~i~v~d~~~~-~s~~~~~~~~~~ 108 (181)
T 1fzq_A 87 LIYVIDSADR-KRFEETGQELTE 108 (181)
T ss_dssp EEEEEETTCG-GGHHHHHHHHHH
T ss_pred EEEEEECcCH-HHHHHHHHHHHH
Confidence 9999999986 344444444443
No 34
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.74 E-value=2.9e-18 Score=127.52 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=59.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc-chHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG-KGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~-~~~~~~~~~~~~~~ 79 (119)
++|+++|.||||||||+|+|++... .+...+++|.+...+.+.+++..+.+|||||+....... ..+..++..+++.|
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5899999999999999999998765 456788899888888888888999999999986432211 23445566788999
Q ss_pred CEEEEEEeCCCCc
Q psy6249 80 DLVLMMLDATKQD 92 (119)
Q Consensus 80 d~il~Vvd~~~~~ 92 (119)
|++++|+|++++.
T Consensus 84 d~il~vvD~~~~~ 96 (436)
T 2hjg_A 84 DVIIFMVNGREGV 96 (436)
T ss_dssp SEEEEEEETTTCS
T ss_pred CEEEEEEeCCCCC
Confidence 9999999999863
No 35
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.74 E-value=7.4e-18 Score=126.80 Aligned_cols=90 Identities=23% Similarity=0.222 Sum_probs=50.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHH-HHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRG-RQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~-~~~~~~~~~~ 79 (119)
++|+++|.||||||||+|+|++... .+++.+++|.+.....+.+++..+.+|||||+.+........+ .....+++.+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~a 313 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEA 313 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccC
Confidence 5799999999999999999998754 5677889999998899999999999999999865332222111 2244577999
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 314 D~vl~VvD~s~~ 325 (476)
T 3gee_A 314 DLILYLLDLGTE 325 (476)
T ss_dssp SEEEEEEETTTC
T ss_pred CEEEEEEECCCC
Confidence 999999999987
No 36
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=110.11 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=58.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..+.......+.+++ ..+.+|||||... +...+..+++.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~ 99 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER-------FNSITSAYYRSA 99 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH-------HHHHHHHHhcCC
Confidence 5899999999999999999997765433333344445555566665 4789999999532 233455677899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 100 d~iilV~D~~~~ 111 (192)
T 2il1_A 100 KGIILVYDITKK 111 (192)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 37
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.74 E-value=2.5e-17 Score=107.32 Aligned_cols=83 Identities=13% Similarity=0.194 Sum_probs=62.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..+.......+.+++ ..+.+|||||...... .+..+++.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~~ 87 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDS 87 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-------GSHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH-------HHHHHhcCC
Confidence 5899999999999999999997665444444445455556666666 4789999999644322 223567889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 88 d~~i~v~d~~~~ 99 (179)
T 2y8e_A 88 TVAVVVYDITNT 99 (179)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 38
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.74 E-value=5.6e-17 Score=107.47 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=66.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|+|.+....... .+|.......+...+..+.+|||||..+. ...+..+++.+|+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~d~ 93 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNEDM--IPTVGFNMRKITKGNVTIKLWDIGGQPRF-------RSMWERYCRGVSA 93 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEETTEEEEEEEECCSHHH-------HTTHHHHHTTCSE
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCCcc--CCCCceeEEEEEeCCEEEEEEECCCCHhH-------HHHHHHHHccCCE
Confidence 58999999999999999999976543222 23444445556777889999999995432 2234456799999
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKELE 103 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l~ 103 (119)
+++|+|++++ ..++.+.+++.
T Consensus 94 ii~v~D~~~~-~s~~~~~~~~~ 114 (188)
T 1zd9_A 94 IVYMVDAADQ-EKIEASKNELH 114 (188)
T ss_dssp EEEEEETTCG-GGHHHHHHHHH
T ss_pred EEEEEECCCH-HHHHHHHHHHH
Confidence 9999999986 34444444443
No 39
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.73 E-value=4.8e-17 Score=108.24 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=67.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.+|+++|.+|||||||+|++.+.... . ..+|.......+.+++..+.+|||||....... +..+++++|+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~ 93 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA--T-LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL-------WKDYFPEVNG 93 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCCSCEEEEEEETTEEEEEEECCCSGGGTTS-------GGGGCTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--c-cccCCCCCeEEEEECCEEEEEEECCCCHHHHHH-------HHHHHhcCCE
Confidence 58999999999999999999976542 1 234555667788888999999999997553322 2245689999
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l 102 (119)
+++|+|++++ ..++.+..++
T Consensus 94 ~i~v~d~~~~-~s~~~~~~~~ 113 (190)
T 1m2o_B 94 IVFLVDAADP-ERFDEARVEL 113 (190)
T ss_dssp EEEEEETTCG-GGHHHHHHHH
T ss_pred EEEEEECCCh-HHHHHHHHHH
Confidence 9999999987 3344444444
No 40
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.73 E-value=1.4e-17 Score=107.78 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=58.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+........+..+.......+.+++ ..+.+|||||....... +..+++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~~~~~~~ 76 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI-------TTAYYRGA 76 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC-------CHHHHTTE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh-------HHHHhccC
Confidence 6899999999999999999997765433333334344445555554 47889999996543222 23567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 77 d~~i~v~d~~~~ 88 (170)
T 1g16_A 77 MGIILVYDITDE 88 (170)
T ss_dssp EEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 41
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.73 E-value=5.4e-17 Score=105.17 Aligned_cols=90 Identities=20% Similarity=0.278 Sum_probs=65.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|+|.+.... . ..+|.......+.+++..+.+|||||...... .+..+++.+|+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~~d~ 77 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEVV-T--TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRP-------YWRCYYSNTDA 77 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-C--CCCCSSEEEEEEEETTEEEEEEEECCCGGGGG-------GGGGGCTTCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-C--cCCcCccceEEEEECCEEEEEEECCCChhhhH-------HHHHHhccCCE
Confidence 58999999999999999999865542 1 12344555666778889999999999754322 12346789999
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l 102 (119)
+++|+|++++ ..++.+..++
T Consensus 78 ii~v~d~~~~-~s~~~~~~~~ 97 (171)
T 1upt_A 78 VIYVVDSCDR-DRIGISKSEL 97 (171)
T ss_dssp EEEEEETTCC-TTHHHHHHHH
T ss_pred EEEEEECCCH-HHHHHHHHHH
Confidence 9999999987 2344444444
No 42
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.73 E-value=2.7e-17 Score=110.23 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=62.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..+.......+.+++. .+.+|||||........ ..+++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~ 81 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT-------SSYYRGS 81 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC-------GGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH-------HHhccCC
Confidence 58999999999999999999977654444444444455556666654 78999999965433222 3467899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 82 d~vilv~d~~~~ 93 (206)
T 2bcg_Y 82 HGIIIVYDVTDQ 93 (206)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 43
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.73 E-value=1.1e-17 Score=113.21 Aligned_cols=90 Identities=16% Similarity=0.078 Sum_probs=65.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc--ccCCCCCceeeeeeeEEE-ECCeeEEEEeCCccccccccc------chHHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS--EAASYEFTTLTCIPGVIE-YKGANIQLLDLPGIIEGAAQG------KGRGRQV 72 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~--~~~~~~~~t~~~~~~~~~-~~~~~~~~~DtpG~~~~~~~~------~~~~~~~ 72 (119)
++|+++|.+|||||||+|+|++... .++..+++|.......+. .++..+.+|||||+....... ..+...+
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 109 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSY 109 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHH
Confidence 5899999999999999999998762 556677777766555554 446889999999976542221 1122234
Q ss_pred HHHhcCCCEEEEEEeCCCC
Q psy6249 73 IAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 73 ~~~~~~~d~il~Vvd~~~~ 91 (119)
++....+|++++|+|+++.
T Consensus 110 ~~~~~~~d~vi~v~d~~~~ 128 (223)
T 4dhe_A 110 LQTRPQLCGMILMMDARRP 128 (223)
T ss_dssp HHHCTTEEEEEEEEETTSC
T ss_pred HhcCcCcCEEEEEEeCCCC
Confidence 4445558899999999975
No 44
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.73 E-value=8.3e-17 Score=104.95 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=59.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+........+..+.......+.+++ ..+.+|||||... .......+++.+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~ 80 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER-------FRSLRTPFYRGS 80 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG-------GHHHHGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh-------hhhhHHHHHhcC
Confidence 5899999999999999999997665433333333444455566666 4789999999533 223344577899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 81 ~~~i~v~d~~~~ 92 (177)
T 1wms_A 81 DCCLLTFSVDDS 92 (177)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 45
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.73 E-value=4e-17 Score=108.06 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=59.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+........+..+.......+.+++ ..+.+|||||..+... ..+..+++.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~~~~ 94 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------SMVQHYYRNV 94 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT------TTHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh------hhhHHHhcCC
Confidence 5899999999999999999997655333333333334445555665 5789999999532110 1234567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 95 d~iilv~D~~~~ 106 (189)
T 1z06_A 95 HAVVFVYDMTNM 106 (189)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 46
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.73 E-value=1.2e-17 Score=109.01 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=59.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC---eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG---ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
++|+++|.+|||||||+|+|++........+....+.....+.+.+ ..+.+|||||...... .+..+++.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~ 79 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK-------MLDKYIYG 79 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT-------THHHHHTT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc-------hhhHHHhh
Confidence 5899999999999999999997654221122222334455666665 6899999999644321 23456789
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|++++
T Consensus 80 ~d~~i~v~d~~~~ 92 (178)
T 2hxs_A 80 AQGVLLVYDITNY 92 (178)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 9999999999986
No 47
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.73 E-value=2.8e-17 Score=108.23 Aligned_cols=90 Identities=13% Similarity=0.173 Sum_probs=64.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|+|++.... ....|.......+.+++..+.+|||||..+.... +..+++++|+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~ 91 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSS-------WNTYYTNTEF 91 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSCE---EEECCSSSSCEEEEETTEEEEEEEESSSGGGTCG-------GGGGGTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC---ccCCcCceeeEEEEECCEEEEEEECCCCHhHHHH-------HHHHhccCCE
Confidence 68999999999999999999977641 1112333344566778899999999997543222 2346789999
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l 102 (119)
+++|+|++++ ..++.+.+++
T Consensus 92 ii~v~D~~~~-~s~~~~~~~~ 111 (181)
T 2h17_A 92 VIVVVDSTDR-ERISVTREEL 111 (181)
T ss_dssp EEEEEETTCT-TTHHHHHHHH
T ss_pred EEEEEECCCH-HHHHHHHHHH
Confidence 9999999986 3344444444
No 48
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.5e-16 Score=105.23 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=64.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..+.......+.+++ ..+.+|||||...... .+..+++.+
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 88 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-------LTPSYYRGA 88 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-------SHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh-------hhHHHhccC
Confidence 5899999999999999999997665333333333334444455554 5789999999644322 234567899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHHHc
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELESV 105 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~~~ 105 (119)
|++++|+|++++ ..++.+..++..+
T Consensus 89 d~ii~v~d~~~~-~s~~~~~~~~~~i 113 (195)
T 1x3s_A 89 QGVILVYDVTRR-DTFVKLDNWLNEL 113 (195)
T ss_dssp CEEEEEEETTCH-HHHHTHHHHHHHH
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHH
Confidence 999999999986 3333344444333
No 49
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=3.4e-17 Score=110.27 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=61.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..+.......+.+++ ..+.+|||||... +...+..+++.+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~ 99 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER-------FRSITQSYYRSA 99 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHGGGSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHHhcC
Confidence 5899999999999999999997665433333333444455566666 4789999999532 223344577999
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 100 d~~i~v~D~~~~ 111 (201)
T 2ew1_A 100 NALILTYDITCE 111 (201)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 50
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=109.68 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=57.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..+.......+.+++ ..+.+|||||..+ +...+..+++.+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~ 102 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER-------FRTITQSYYRSA 102 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGG-------GHHHHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh-------HHHHHHHHHhhC
Confidence 5899999999999999999987664322222222233445566666 5889999999532 233455678999
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 103 d~iilv~D~~~~ 114 (201)
T 2hup_A 103 NGAILAYDITKR 114 (201)
T ss_dssp SEEEEEEETTBH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 51
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.72 E-value=3.9e-17 Score=109.40 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=63.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
.+|+++|.+|||||||+|++++.... .+ .+|.....+.+.+++..+.+|||||....... +..+++.+|+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~~~~d~ 95 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG--QH-VPTLHPTSEELTIAGMTFTTFDLGGHIQARRV-------WKNYLPAING 95 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CCG-------GGGGGGGCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-CCCCCceeEEEEECCEEEEEEECCCcHhhHHH-------HHHHHhcCCE
Confidence 58999999999999999999876542 11 23455566778888999999999996543322 2246789999
Q ss_pred EEEEEeCCCCchhHHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKELE 103 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l~ 103 (119)
+++|+|++++ ..++.+..++.
T Consensus 96 ~i~v~D~~~~-~s~~~~~~~~~ 116 (198)
T 1f6b_A 96 IVFLVDCADH-ERLLESKEELD 116 (198)
T ss_dssp EEEEEETTCG-GGHHHHHHHHH
T ss_pred EEEEEECCCH-HHHHHHHHHHH
Confidence 9999999986 33444444443
No 52
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.72 E-value=8.7e-17 Score=105.18 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=58.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..+.......+.+++ ..+.+|||||...... .+..+++.+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 85 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-------LAPMYYRGA 85 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG-------GTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh-------hhHHHhccC
Confidence 5899999999999999999997765333222222223334444543 4789999999543221 234567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 86 d~~i~v~d~~~~ 97 (181)
T 2efe_B 86 AAAIIVFDVTNQ 97 (181)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 53
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=7e-18 Score=126.10 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=66.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccc-cchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ-GKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~-~~~~~~~~~~~~~~~ 79 (119)
++|+++|.||||||||+|+|++.+. .+...+++|.....+.+.+.+..+.+|||||+...... ...+..++..+++.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 103 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 103 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhC
Confidence 6899999999999999999998765 46677888888888888778889999999998643222 223455566788999
Q ss_pred CEEEEEEeCCCCchhH-HHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQR-GLLEKELES 104 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~-~~~~~~l~~ 104 (119)
|++++|+|+++..... ..+.+.+..
T Consensus 104 d~il~VvD~~~~~~~~d~~l~~~l~~ 129 (456)
T 4dcu_A 104 DVIIFMVNGREGVTAADEEVAKILYR 129 (456)
T ss_dssp SEEEEEEESSSCSCHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHH
Confidence 9999999998753322 334444443
No 54
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.72 E-value=4.6e-17 Score=108.05 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=58.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..+.......+.+++ ..+.+|||||....... +..+++.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~ 94 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI-------TRSYYRGA 94 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC-------CHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh-------HHHHhccC
Confidence 5899999999999999999997665333333333334445566665 47899999996543222 23567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 95 d~ii~v~d~~~~ 106 (191)
T 2a5j_A 95 AGALLVYDITRR 106 (191)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 55
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.72 E-value=7.4e-17 Score=108.85 Aligned_cols=98 Identities=18% Similarity=0.105 Sum_probs=65.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC------------CeeEEEEeCCcccccccccchHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK------------GANIQLLDLPGIIEGAAQGKGRG 69 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~------------~~~~~~~DtpG~~~~~~~~~~~~ 69 (119)
++|+++|.+|||||||+|+|++........+..........+.++ ...+.+|||||... +.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~ 98 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER-------FR 98 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH-------HH
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh-------HH
Confidence 589999999999999999999765422211111112222334343 35799999999422 23
Q ss_pred HHHHHHhcCCCEEEEEEeCCCCchhHHHHHHHHHHcCC
Q psy6249 70 RQVIAVARTADLVLMMLDATKQDVQRGLLEKELESVGI 107 (119)
Q Consensus 70 ~~~~~~~~~~d~il~Vvd~~~~~~~~~~~~~~l~~~~~ 107 (119)
..+..+++.+|++++|+|++++ ..++.+..++..+..
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~-~s~~~~~~~l~~i~~ 135 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQ-QSFLNVRNWMSQLQA 135 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCH-HHHHHHHHHHHTCCC
T ss_pred hHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHH
Confidence 3455678999999999999986 445555556655543
No 56
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.72 E-value=6.3e-17 Score=107.17 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=57.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC----------------------------------
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG---------------------------------- 47 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~---------------------------------- 47 (119)
++|+++|.+|||||||+|+|++........+..........+.+++
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYN 87 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999997764322222222223333333333
Q ss_pred -----eeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 48 -----ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 48 -----~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
..+.+|||||...... ....+++.+|++++|+|++++
T Consensus 88 ~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~D~~~~ 129 (208)
T 3clv_A 88 ENLCNIKFDIWDTAGQERYAS-------IVPLYYRGATCAIVVFDISNS 129 (208)
T ss_dssp TTTCEEEEEEEECTTGGGCTT-------THHHHHTTCSEEEEEEETTCH
T ss_pred CccceeEEEEEECCCcHHHHH-------HHHHHhcCCCEEEEEEECCCH
Confidence 6789999999543221 234567899999999999986
No 57
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.72 E-value=7.4e-17 Score=106.28 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=58.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeee-eeEEEECC-----------eeEEEEeCCcccccccccchHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCI-PGVIEYKG-----------ANIQLLDLPGIIEGAAQGKGRG 69 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~~~~~DtpG~~~~~~~~~~~~ 69 (119)
++|+++|.+|||||||+|+|.+........+....... ...+..++ ..+.+|||||... +.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~ 84 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER-------FR 84 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------GH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------HH
Confidence 58999999999999999999976543222222222222 22344443 4799999999632 23
Q ss_pred HHHHHHhcCCCEEEEEEeCCCC
Q psy6249 70 RQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 70 ~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
..+..+++.+|++++|+|++++
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~ 106 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNE 106 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCH
T ss_pred HHHHHHHcCCCEEEEEEECCCH
Confidence 4456678999999999999986
No 58
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=8.7e-17 Score=106.01 Aligned_cols=89 Identities=25% Similarity=0.366 Sum_probs=68.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc--chHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG--KGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~--~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++....++.++++|.....+.+.+++..+.+|||||........ ..+...++.. ..+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~-~~~ 86 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN-EKP 86 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH-HCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhc-cCC
Confidence 5899999999999999999998776667778888888888888889999999999986543211 1122222211 359
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|+++.
T Consensus 87 ~~~i~v~d~~~~ 98 (188)
T 2wjg_A 87 DLVVNIVDATAL 98 (188)
T ss_dssp SEEEEEEEGGGH
T ss_pred CEEEEEecchhH
Confidence 999999999874
No 59
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.72 E-value=8.7e-17 Score=103.78 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=59.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+........+..+.......+.+++ ..+.+|||||..+.... ...+++.+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 78 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI-------TKAYYRGA 78 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC-------CHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH-------HHHHhcCC
Confidence 5899999999999999999997654333233333334444555554 47899999996543222 23567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 79 d~~i~v~d~~~~ 90 (168)
T 1z2a_A 79 QACVLVFSTTDR 90 (168)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 60
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.72 E-value=7.8e-18 Score=110.65 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=42.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..+.......+.+++ ..+.+|||||...... .+..+++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 81 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRGA 81 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh-------hHHHHHhcC
Confidence 5899999999999999999997654333233333344445566666 6789999999643221 123467899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 82 d~~i~v~d~~~~ 93 (183)
T 2fu5_C 82 MGIMLVYDITNE 93 (183)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 61
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=109.93 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=55.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..+.......+.+++ ..+.+|||||....... +..+++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~-------~~~~~~~~ 98 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV-------TRSYYRGA 98 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC-------CHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH-------HHHHhccC
Confidence 5899999999999999999997765433333333344455566666 57899999995432221 23567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 99 d~~i~v~d~~~~ 110 (200)
T 2o52_A 99 AGALLVYDITSR 110 (200)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 62
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.72 E-value=6.4e-17 Score=105.40 Aligned_cols=83 Identities=22% Similarity=0.176 Sum_probs=58.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..........+..++ ..+.+|||||.... ...+..+++.+
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 88 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF-------RAVTRSYYRGA 88 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT-------CHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh-------hhhHHHHhccC
Confidence 5899999999999999999997664322222222223334444554 47899999995332 22345577899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 89 d~~i~v~d~~~~ 100 (179)
T 1z0f_A 89 AGALMVYDITRR 100 (179)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEeCcCH
Confidence 999999999986
No 63
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=3.7e-17 Score=106.88 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=57.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc-CCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA-ASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
++|+++|.+|||||||+|+|++..... ...+..+.......+..++. .+.+|||||.... ...+..+++.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~~~~ 83 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF-------RSVTHAYYRD 83 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCGGG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHHccC
Confidence 589999999999999999999776532 22333333444444555654 7899999995332 2223456789
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|++++
T Consensus 84 ~d~ii~v~d~~~~ 96 (180)
T 2g6b_A 84 AHALLLLYDVTNK 96 (180)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 9999999999986
No 64
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.72 E-value=4.7e-17 Score=107.81 Aligned_cols=82 Identities=11% Similarity=0.191 Sum_probs=62.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|+|++....... ..+|.......+.+++..+.+|||||..+... .+..+++++|+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d~ 93 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQN-ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN-------LWEHYYKEGQA 93 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGGCCSS-CCCCSSEEEEEEECSSCEEEEEEECCSTTTGG-------GGGGGGGGCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCC-cCCccceeEEEEEECCEEEEEEECCCCHHHHH-------HHHHHHhcCCE
Confidence 68999999999999999999976532222 23455566677778889999999999654322 12346789999
Q ss_pred EEEEEeCCCC
Q psy6249 82 VLMMLDATKQ 91 (119)
Q Consensus 82 il~Vvd~~~~ 91 (119)
+++|+|++++
T Consensus 94 ii~v~d~~~~ 103 (190)
T 2h57_A 94 IIFVIDSSDR 103 (190)
T ss_dssp EEEEEETTCH
T ss_pred EEEEEECCCH
Confidence 9999999986
No 65
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.72 E-value=6.6e-17 Score=104.42 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=57.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC--CeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK--GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..........+.++ +..+.+|||||..+.. .....+++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 79 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH-------SLAPMYYRGA 79 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh-------hhhHHhccCC
Confidence 589999999999999999999765432222222222223334444 4578999999954321 2234567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 80 d~~i~v~d~~~~ 91 (170)
T 1r2q_A 80 QAAIVVYDITNE 91 (170)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 66
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.72 E-value=1.2e-16 Score=106.78 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=58.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..........+..++ ..+.+|||||... +...+..+++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 81 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER-------YRTITTAYYRGA 81 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHHTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchh-------hcchHHHhhcCC
Confidence 5899999999999999999998765332222222223333444443 5789999999643 223345577899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 82 d~ii~v~d~~~~ 93 (203)
T 1zbd_A 82 MGFILMYDITNE 93 (203)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 67
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.71 E-value=2.3e-17 Score=106.83 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=56.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++++........+..+.......+.+++ ..+.+|||||..+.. .....+++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 79 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH-------ALGPIYYRDS 79 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHHHhccC
Confidence 5899999999999999999997664333333333333444555554 367899999954321 1222356899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 80 d~~i~v~d~~~~ 91 (170)
T 1z08_A 80 NGAILVYDITDE 91 (170)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 68
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.71 E-value=1e-16 Score=106.84 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=63.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|++++.... . ..+|.......+..++..+.+|||||..+... .+..+++.+|+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 99 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNICFTVWDVGGQDKIRP-------LWRHYFQNTQG 99 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSCCE-E--EEEETTEEEEEEEETTEEEEEEECC-----CT-------THHHHHHTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCcc-c--cCCcCceeEEEEEECCEEEEEEECCCCHhHHH-------HHHHHhccCCE
Confidence 68999999999999999999876542 1 12344445556777889999999999744221 23346689999
Q ss_pred EEEEEeCCCCchhHHHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
+++|+|++++ ..++.+..++..
T Consensus 100 iilv~D~~~~-~s~~~~~~~l~~ 121 (192)
T 2b6h_A 100 LIFVVDSNDR-ERVQESADELQK 121 (192)
T ss_dssp EEEEEETTCG-GGHHHHHHHHHH
T ss_pred EEEEEECCCH-HHHHHHHHHHHH
Confidence 9999999987 344555455433
No 69
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.71 E-value=6e-17 Score=108.18 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=55.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..........+.+++ ..+.+|||||... +...+..+++.+
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~ 101 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER-------FRSIAKSYFRKA 101 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTT-------CHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcc-------hhhhHHHHHhhC
Confidence 6899999999999999999997654221111111222233444554 4689999999533 223445577889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 102 d~iilv~d~~~~ 113 (199)
T 2p5s_A 102 DGVLLLYDVTCE 113 (199)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCh
Confidence 999999999986
No 70
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.71 E-value=1e-16 Score=104.58 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=66.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|+|++........++.+.......+.+++..+.+|||||........ ..++..+|+
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~d~ 81 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR-------ARGAQVTDI 81 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC-------CSSCCCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH-------HHHHhhCCE
Confidence 6899999999999999999998776555556666666666778889999999999975543322 245688999
Q ss_pred EEEEEeCCCC
Q psy6249 82 VLMMLDATKQ 91 (119)
Q Consensus 82 il~Vvd~~~~ 91 (119)
+++|+|++++
T Consensus 82 ~i~v~d~~~~ 91 (178)
T 2lkc_A 82 VILVVAADDG 91 (178)
T ss_dssp EEEEEETTCC
T ss_pred EEEEEECCCC
Confidence 9999999875
No 71
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=105.75 Aligned_cols=83 Identities=20% Similarity=0.182 Sum_probs=57.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC--CeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK--GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..........+.++ ...+.+|||||...... .+..+++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 98 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA-------ITSAYYRGA 98 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT-------THHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh-------hhHHHhccC
Confidence 589999999999999999999766532222222222222333343 35789999999754321 234567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 99 d~vi~v~D~~~~ 110 (193)
T 2oil_A 99 VGALLVFDLTKH 110 (193)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 72
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=3.2e-17 Score=107.57 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=63.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|++++.... ...+|.......+.+++..+.+|||||....... +..+++.+|+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~ 88 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEVV---TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPY-------WRCYYADTAA 88 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEEE---EECSSTTCCEEEEEETTEEEEEEEEC----CCTT-------GGGTTTTEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCcC---ccCCcCccceEEEEECCEEEEEEECCCCHhHHHH-------HHHHhccCCE
Confidence 58999999999999999999865541 1122333445566778899999999997553322 2346689999
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHc
Q psy6249 82 VLMMLDATKQDVQRGLLEKELESV 105 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l~~~ 105 (119)
+++|+|++++ ..++.+.+++...
T Consensus 89 ii~v~d~~~~-~s~~~~~~~~~~~ 111 (183)
T 1moz_A 89 VIFVVDSTDK-DRMSTASKELHLM 111 (183)
T ss_dssp EEEEEETTCT-TTHHHHHHHHHHH
T ss_pred EEEEEECCCH-HHHHHHHHHHHHH
Confidence 9999999987 3445555555443
No 73
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.71 E-value=1.8e-16 Score=102.52 Aligned_cols=83 Identities=11% Similarity=0.147 Sum_probs=57.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+........+..........+.+.+ ..+.+|||||..... .....+++.+
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 79 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR-------ALAPMYYRGS 79 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh-------cccHhhCcCC
Confidence 5899999999999999999997764222222221222233344443 578999999974322 1234567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 80 ~~~i~v~d~~~~ 91 (170)
T 1z0j_A 80 AAAIIVYDITKE 91 (170)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 74
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.70 E-value=1.3e-16 Score=105.88 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=65.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|+|++.......+ ..|.......+...+..+.+|||||....... +..+++.+|+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~ 89 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHI-TATVGYNVETFEKGRVAFTVFDMGGAKKFRGL-------WETYYDNIDA 89 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CC-CCCSSEEEEEEEETTEEEEEEEECCSGGGGGG-------GGGGCTTCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCccccc-ccccceeEEEEEeCCEEEEEEECCCCHhHHHH-------HHHHHhcCCE
Confidence 589999999999999999999877543122 23444555566778899999999997543222 2346789999
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l 102 (119)
+++|+|++++ ..++.+.+++
T Consensus 90 ii~v~D~~~~-~s~~~~~~~~ 109 (199)
T 4bas_A 90 VIFVVDSSDH-LRLCVVKSEI 109 (199)
T ss_dssp EEEEEETTCG-GGHHHHHHHH
T ss_pred EEEEEECCcH-HHHHHHHHHH
Confidence 9999999986 3344444444
No 75
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.70 E-value=1.9e-16 Score=101.93 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=57.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+... ...+..++.......+.+++ ..+.+|||||..+. ...+..+++.+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~~ 76 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAIRDNYFRSG 76 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C-------HHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh-------HHHHHHHhhcC
Confidence 5899999999999999999997654 22333333333344455555 47889999995332 22344567889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 77 d~~i~v~d~~~~ 88 (168)
T 1u8z_A 77 EGFLCVFSITEM 88 (168)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 76
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.70 E-value=6e-17 Score=110.13 Aligned_cols=83 Identities=23% Similarity=0.201 Sum_probs=58.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..+.......+.+++ ..+.+|||||........ ..+++.+
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~~ 86 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT-------SAYYRGA 86 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC-------GGGTTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhH-------HHHhccC
Confidence 5899999999999999999997765433333333344445566666 578999999965432222 3467899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 87 d~vilV~D~~~~ 98 (223)
T 3cpj_B 87 VGALIVYDISKS 98 (223)
T ss_dssp CEEEEEEC-CCH
T ss_pred CEEEEEEeCCCH
Confidence 999999999986
No 77
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.70 E-value=8.1e-17 Score=106.46 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=64.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|++.+..... . .+|.......+.+++..+.+|||||..+..... ..+++.+|+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------~~~~~~~d~ 92 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGDVVT-T--VPTVGVNLETLQYKNISFEVWDLGGQTGVRPYW-------RCYFSDTDA 92 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSCCEE-E--CSSTTCCEEEEEETTEEEEEEEECCSSSSCCCC-------SSSSTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-c--CCCCceEEEEEEECCEEEEEEECCCCHhHHHHH-------HHHhhcCCE
Confidence 689999999999999999998655421 1 223345555677788999999999975543322 235689999
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l 102 (119)
+++|+|++++ +.++.+.+++
T Consensus 93 ii~v~d~~~~-~s~~~~~~~~ 112 (189)
T 2x77_A 93 VIYVVDSTDR-DRMGVAKHEL 112 (189)
T ss_dssp EEEEEETTCC-TTHHHHHHHH
T ss_pred EEEEEeCCCH-HHHHHHHHHH
Confidence 9999999987 3344444444
No 78
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.70 E-value=7.8e-18 Score=126.82 Aligned_cols=90 Identities=23% Similarity=0.292 Sum_probs=74.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccc-ccccccchHH-HHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGII-EGAAQGKGRG-RQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~-~~~~~~~~~~-~~~~~~~~~ 78 (119)
++|+++|.||||||||+|+|++.+. .+++++++|.++....+.+++..+.+|||||+. +.....+..+ ...+.+++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~ 323 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 323 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhc
Confidence 5899999999999999999998764 578899999999999999999999999999987 5433222222 335668899
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|++++
T Consensus 324 aD~vl~VvD~s~~ 336 (482)
T 1xzp_A 324 ADIVLFVLDASSP 336 (482)
T ss_dssp CSEEEEEEETTSC
T ss_pred ccEEEEEecCCCC
Confidence 9999999999886
No 79
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.70 E-value=1.5e-16 Score=104.25 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=59.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+... ...+..++.......+..++ ..+.+|||||........ ..+++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~ 78 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP-------QTYSIDI 78 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC-------GGGTTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHH-------HHHHhcC
Confidence 5899999999999999999996553 33333343333355556666 467899999975543222 2366889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 79 ~~~i~v~d~~~~ 90 (181)
T 3t5g_A 79 NGYILVYSVTSI 90 (181)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 80
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.1e-16 Score=106.42 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=56.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc--cCCCCCceeeeeeeEEEEC--CeeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE--AASYEFTTLTCIPGVIEYK--GANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~--~~~~~~~t~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
++|+++|.+|||||||+|+|++.... ..+..+.+. ....+.++ ...+.+|||||..+... .+..+++
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~ 94 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASF--MTKTVPCGNELHKFLIWDTAGQERFHS-------LAPMYYR 94 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEE--EEEEEECSSSEEEEEEEEECCSGGGGG-------GTHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeE--EEEEEEeCCEEEEEEEEcCCCchhhHh-------hhHHhhc
Confidence 58999999999999999999976642 222222222 22233333 45789999999543221 2345678
Q ss_pred CCCEEEEEEeCCCC
Q psy6249 78 TADLVLMMLDATKQ 91 (119)
Q Consensus 78 ~~d~il~Vvd~~~~ 91 (119)
.+|++++|+|++++
T Consensus 95 ~~d~iilV~d~~~~ 108 (192)
T 2fg5_A 95 GSAAAVIVYDITKQ 108 (192)
T ss_dssp TCSEEEEEEETTCT
T ss_pred cCCEEEEEEeCCCH
Confidence 99999999999987
No 81
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.70 E-value=1.9e-16 Score=104.13 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=58.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCee--EEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGAN--IQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++... ...++.++.......+..++.. +.+|||||..+... ....+++.+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 76 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRTG 76 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT-------THHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH-------HHHHHHhcC
Confidence 6899999999999999999997654 3334444444555556666654 67899999544322 223456789
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 77 ~~~i~v~d~~~~ 88 (189)
T 4dsu_A 77 EGFLCVFAINNT 88 (189)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 82
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.70 E-value=8.4e-17 Score=114.88 Aligned_cols=87 Identities=13% Similarity=0.070 Sum_probs=67.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEE-CCeeEEEEeCCcccccccccchH-HHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEY-KGANIQLLDLPGIIEGAAQGKGR-GRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~-~~~~~~~~~~ 78 (119)
+||+++|.+|||||||+|++++... ..+..+++|.+...+.+.+ ++..+.+|||||...... .+ ......++++
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME---NYFTKQKDHIFQM 80 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH---HHHTTTHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhh---hhhhhHHHHHhcc
Confidence 5899999999999999999987643 4556788888888888776 567899999999643200 00 1123446689
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|++++
T Consensus 81 ad~vi~V~D~t~~ 93 (307)
T 3r7w_A 81 VQVLIHVFDVEST 93 (307)
T ss_dssp CSEEEEEEETTCS
T ss_pred CCEEEEEEECCCh
Confidence 9999999999987
No 83
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.70 E-value=1.4e-16 Score=105.48 Aligned_cols=83 Identities=17% Similarity=0.118 Sum_probs=57.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC--CeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK--GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..+.......+... ...+.+|||||....... +..+++.+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 95 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI-------TTAYYRGA 95 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS-------GGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh-------HHHhccCC
Confidence 589999999999999999999766432222222222333334444 357899999996543222 23467899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 96 d~ii~v~d~~~~ 107 (189)
T 2gf9_A 96 MGFLLMYDIANQ 107 (189)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 84
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.70 E-value=3.4e-16 Score=100.62 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=57.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++.+..... .+..++.......+.+++. .+.+|||||..+. ......+++.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~~ 75 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF-------ASMRDLYIKNG 75 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECCEEEEEEEEECCCchhh-------HHHHHHHhccC
Confidence 589999999999999999999765422 2222332333444555554 4889999995432 22334567889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 76 ~~~i~v~d~~~~ 87 (167)
T 1kao_A 76 QGFILVYSLVNQ 87 (167)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEeCCCH
Confidence 999999999986
No 85
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.70 E-value=2.5e-16 Score=105.18 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=60.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+........+..+.......+.+++ ..+.+|||||........ ..+++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~ 81 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG-------VAFYRGA 81 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC-------CGGGTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH-------HHHHhCC
Confidence 5899999999999999999997765433333333444455555554 578999999965433222 2467899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 82 d~~i~v~d~~~~ 93 (207)
T 1vg8_A 82 DCCVLVFDVTAP 93 (207)
T ss_dssp SEEEEEEETTCH
T ss_pred cEEEEEEECCCH
Confidence 999999999986
No 86
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.70 E-value=3.3e-16 Score=109.36 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=69.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHh--cC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVA--RT 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~--~~ 78 (119)
++|+++|.+|||||||+|+|++... .++.++++|.......+.+++..+.+|||||+.+.............+++ ..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~ 116 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRT 116 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCC
Confidence 5899999999999999999998775 56677788888888888889999999999999776544433333333333 37
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|....
T Consensus 117 ~~~il~V~~~d~~ 129 (262)
T 3def_A 117 IDVLLYVDRLDVY 129 (262)
T ss_dssp ECEEEEEEESSCS
T ss_pred CCEEEEEEcCCCC
Confidence 8999999887653
No 87
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.69 E-value=8.2e-18 Score=112.42 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=65.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+..+.......+.+++ ..+.+|||||........ ..+++.+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~~ 106 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT-------SSYYRGA 106 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS-------CC--CCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH-------HHHhhcC
Confidence 5899999999999999999997665433334444455566666766 568999999965433222 2366899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHHHc
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELESV 105 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~~~ 105 (119)
|++++|+|++++ ..++.+..++...
T Consensus 107 d~~i~v~d~~~~-~s~~~~~~~~~~i 131 (199)
T 3l0i_B 107 HGIIVVYDVTDQ-ESFNNVKQWLQEI 131 (199)
T ss_dssp SEEEECC-CCCS-HHHHHHHHHHHHH
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHH
Confidence 999999999997 3444444444433
No 88
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.69 E-value=3.5e-16 Score=104.32 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=60.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+... ...+..++.......+.+++. .+.+|||||..+. ......+++.+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 86 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAIRDNYFRSG 86 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh-------HHHHHHHHhhC
Confidence 5899999999999999999997663 233444444444455566654 7889999995432 22344567889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 87 ~~~i~v~d~~~~ 98 (206)
T 2bov_A 87 EGFLCVFSITEM 98 (206)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 89
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.69 E-value=1.2e-16 Score=104.31 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=53.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC---CeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK---GANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
++|+++|.+|||||||+|+|.+........+..+.......+.++ ...+.+|||||.... ...+..+++.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~ 81 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF-------QSLGVAFYRG 81 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCSTT
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHh-------hhhhHHHhhc
Confidence 589999999999999999999766433333333333444445444 357899999994332 1223346789
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|++++
T Consensus 82 ~d~~i~v~d~~~~ 94 (182)
T 1ky3_A 82 ADCCVLVYDVTNA 94 (182)
T ss_dssp CCEEEEEEETTCH
T ss_pred CCEEEEEEECCCh
Confidence 9999999999986
No 90
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.69 E-value=1.9e-16 Score=102.55 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=52.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++++........+..+.......+.+++ ..+.+|||||....... ....+++.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~~~~ 76 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW------LQDHCLQTG 76 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------CHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh------hhhhhhccC
Confidence 6899999999999999999987665444334444555555666665 46779999996542210 112245779
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 77 d~~i~v~d~~~~ 88 (169)
T 3q85_A 77 DAFLIVFSVTDR 88 (169)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCh
Confidence 999999999986
No 91
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.69 E-value=2.7e-17 Score=117.26 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=67.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccc-cccccc-chHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGII-EGAAQG-KGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~-~~~~~~-~~~~~~~~~~~~~ 78 (119)
..|+++|+||||||||+|+|++.+. .++..+++|.....+.+..++.++.++||||+. ...... ..+.......++.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~ 88 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 88 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc
Confidence 3699999999999999999998876 346677788877788888888999999999986 221100 0011112346789
Q ss_pred CCEEEEEEeCCC
Q psy6249 79 ADLVLMMLDATK 90 (119)
Q Consensus 79 ~d~il~Vvd~~~ 90 (119)
+|++++|+|+++
T Consensus 89 ~D~vl~Vvd~~~ 100 (301)
T 1ega_A 89 VELVIFVVEGTR 100 (301)
T ss_dssp EEEEEEEEETTC
T ss_pred CCEEEEEEeCCC
Confidence 999999999987
No 92
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.69 E-value=3.9e-16 Score=102.28 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=59.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+... ...+..++.......+.+++ ..+.+|||||..+. ...+..+++.+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 90 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAIRDNYFRSG 90 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc-------HHHHHHHhccC
Confidence 5899999999999999999997654 23333444344444455555 37889999995432 23344567889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 91 d~~i~v~d~~~~ 102 (187)
T 2a9k_A 91 EGFLCVFSITEM 102 (187)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 93
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.69 E-value=1.2e-16 Score=118.77 Aligned_cols=90 Identities=11% Similarity=0.176 Sum_probs=64.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc---chHH-HHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG---KGRG-RQVIAVA 76 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~---~~~~-~~~~~~~ 76 (119)
++|+++|.||||||||+|+|++... .+++++++|.+.....+.+++..+.+|||||+.+..... +.+. .....++
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~ 255 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 255 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHH
Confidence 5899999999999999999998775 477888999988888888999999999999986543311 1111 1234577
Q ss_pred cCCCEEEEEEeCCCC
Q psy6249 77 RTADLVLMMLDATKQ 91 (119)
Q Consensus 77 ~~~d~il~Vvd~~~~ 91 (119)
+.+|++++|+|++++
T Consensus 256 ~~ad~~llv~D~~~~ 270 (436)
T 2hjg_A 256 DRSEVVAVVLDGEEG 270 (436)
T ss_dssp HHCSEEEEEEETTTC
T ss_pred HhCCEEEEEEcCCcC
Confidence 889999999999986
No 94
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.68 E-value=4.5e-16 Score=101.50 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=59.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++... ...+..++.......+.+++ ..+.+|||||..+... ....+++.+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~~ 81 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA-------MREQYMRAG 81 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC-------CHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHHhhC
Confidence 5899999999999999999997643 23334444334445566665 4688999999654322 123456789
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 82 d~~i~v~d~~~~ 93 (181)
T 2fn4_A 82 HGFLLVFAINDR 93 (181)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEeCCCH
Confidence 999999999986
No 95
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.68 E-value=4.7e-16 Score=112.98 Aligned_cols=90 Identities=27% Similarity=0.380 Sum_probs=71.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccc-hHHHH-HHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGK-GRGRQ-VIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~-~~~~~-~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++....++..+++|.....+.+...+..+.+|||||+.+...... ....+ .......+
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~a 247 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLG 247 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcC
Confidence 58999999999999999999988876777888888888888888888999999999876533222 22223 22344579
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 248 d~illV~D~s~~ 259 (357)
T 2e87_A 248 NLIIYIFDPSEH 259 (357)
T ss_dssp SEEEEEECTTCT
T ss_pred CEEEEEEeCCcc
Confidence 999999998875
No 96
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.68 E-value=2.7e-16 Score=102.81 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=55.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++++..... +..+........+.+++ ..+.+|||||... ..+++++
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~~~~~~~ 73 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD------------AKFSGWA 73 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC------------HHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch------------hHHHHhC
Confidence 589999999999999999999766432 22222222234455555 4678999999543 2356789
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 74 d~~ilv~D~~~~ 85 (178)
T 2iwr_A 74 DAVIFVFSLEDE 85 (178)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 97
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=4.7e-17 Score=108.00 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=57.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE--CCeeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY--KGANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
.++|+++|.+|||||||+|+|++........+..+.......+.. ....+.+|||||... +......+++.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~ 95 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER-------YRTITTAYYRG 95 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH-------CHHHHHHHHTT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHHcc
Confidence 368999999999999999999975532211111111222223333 356799999999422 22345567899
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|++++
T Consensus 96 ~d~~i~v~d~~~~ 108 (191)
T 3dz8_A 96 AMGFILMYDITNE 108 (191)
T ss_dssp CCEEEEEEETTCH
T ss_pred CCEEEEEEECcCH
Confidence 9999999999986
No 98
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.68 E-value=6.8e-16 Score=108.12 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=67.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHH--hcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAV--ART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~--~~~ 78 (119)
++|+++|.+|+|||||+|+|++... .++..+++|.......+..++..+.+|||||+.+...........+.++ .+.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~ 119 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKT 119 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCC
Confidence 5899999999999999999998775 4566677777776677777888999999999876543332222223222 247
Q ss_pred CCEEEEEEeCCC
Q psy6249 79 ADLVLMMLDATK 90 (119)
Q Consensus 79 ~d~il~Vvd~~~ 90 (119)
+|++++|+|++.
T Consensus 120 ~d~il~v~~~d~ 131 (270)
T 1h65_A 120 IDVLLYVDRLDA 131 (270)
T ss_dssp ECEEEEEEESSC
T ss_pred CCEEEEEEeCCC
Confidence 999999988765
No 99
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.68 E-value=2.7e-16 Score=102.19 Aligned_cols=83 Identities=7% Similarity=0.029 Sum_probs=53.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc-cCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE-AASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
++|+++|.+|||||||+|+|++.... ....++.+ .....+.+++. .+.+|||||...... ......+++.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~~ 77 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGEDTTLVVVDTWEAEKLDK-----SWSQESCLQG 77 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTEEEEEEEECCC------------CHHHHHTTTS
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCEEEEEEEEecCCCCccch-----hhhHHhhccc
Confidence 58999999999999999999977652 22223332 23344555654 678999999643210 1112345688
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|++++
T Consensus 78 ~~~~i~v~d~~~~ 90 (175)
T 2nzj_A 78 GSAYVIVYSIADR 90 (175)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 9999999999986
No 100
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.67 E-value=1.9e-16 Score=102.29 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=46.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
.++|+++|.+|||||||+|++++... .....++++.. ..+.+++ ..+.+|||||..... .....+++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~ 71 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGR-------WLPGHCMA 71 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccch-------hhhhhhhh
Confidence 36999999999999999999987654 22333343332 2233443 467899999964321 12334668
Q ss_pred CCCEEEEEEeCCCC
Q psy6249 78 TADLVLMMLDATKQ 91 (119)
Q Consensus 78 ~~d~il~Vvd~~~~ 91 (119)
.+|++++|+|++++
T Consensus 72 ~~~~~i~v~d~~~~ 85 (166)
T 3q72_A 72 MGDAYVIVYSVTDK 85 (166)
T ss_dssp -CCEEEEEEETTCH
T ss_pred hCCEEEEEEECCCH
Confidence 99999999999986
No 101
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.67 E-value=3.4e-16 Score=116.97 Aligned_cols=103 Identities=11% Similarity=0.125 Sum_probs=72.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccc---cchH-HHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ---GKGR-GRQVIAVA 76 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~---~~~~-~~~~~~~~ 76 (119)
++|+++|.+|+|||||+|+|++... .++.++++|.......+.+++..+.+|||||+.+.... .+.+ ....+.++
T Consensus 196 ~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~ 275 (456)
T 4dcu_A 196 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 275 (456)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHH
T ss_pred ceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHH
Confidence 5899999999999999999997754 67788889988888889899999999999998654322 1112 22344578
Q ss_pred cCCCEEEEEEeCCCCc-hhHHHHHHHHHH
Q psy6249 77 RTADLVLMMLDATKQD-VQRGLLEKELES 104 (119)
Q Consensus 77 ~~~d~il~Vvd~~~~~-~~~~~~~~~l~~ 104 (119)
+.+|++++|+|+++.. ++...+..++..
T Consensus 276 ~~ad~~llviD~~~~~~~~~~~~~~~~~~ 304 (456)
T 4dcu_A 276 DRSEVVAVVLDGEEGIIEQDKRIAGYAHE 304 (456)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHHH
T ss_pred hhCCEEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 8999999999999863 233334444444
No 102
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.67 E-value=4.9e-16 Score=116.85 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=69.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|+|++... .. ..+|.......+.+++..+.+|||||...... .+..+++++|+
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ad~ 392 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP-------LWRHYYTGTQG 392 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEEEESSSCEEEEEEECCCGGGSG-------GGGGGGTTCCE
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEEEEeCCEEEEEEECCCcHHHHH-------HHHHHhccCCE
Confidence 5899999999999999999997763 22 24577778888888899999999999644322 23457899999
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l 102 (119)
+|+|+|++++ ..++.+..++
T Consensus 393 ~i~V~D~~~~-~s~~~~~~~~ 412 (497)
T 3lvq_E 393 LIFVVDCADR-DRIDEARQEL 412 (497)
T ss_dssp EEEEEETTCG-GGHHHHHHHH
T ss_pred EEEEEECcch-hHHHHHHHHH
Confidence 9999999986 3344444444
No 103
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.67 E-value=7.8e-16 Score=101.02 Aligned_cols=82 Identities=21% Similarity=0.137 Sum_probs=56.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++..... .+..++.......+..++. .+.+|||||...... ....+++.+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 90 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKIFVD-DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA-------MREQYMRTG 90 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS-------SHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH-------HHHHHHhcC
Confidence 589999999999999999999664322 2223333333445555655 456799999644322 123456789
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 91 d~~i~v~d~~~~ 102 (183)
T 3kkq_A 91 DGFLIVYSVTDK 102 (183)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 104
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.66 E-value=1e-15 Score=101.00 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=64.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc------chHHHHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG------KGRGRQVIA 74 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~------~~~~~~~~~ 74 (119)
++|+++|.+|||||||+|+|++... ...+.+++|....... .+..+.+|||||+....... ..+...+.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 6899999999999999999998763 3444555554443322 24578899999975432211 112222333
Q ss_pred HhcCCCEEEEEEeCCCCch-hHHHHHHHHHHc
Q psy6249 75 VARTADLVLMMLDATKQDV-QRGLLEKELESV 105 (119)
Q Consensus 75 ~~~~~d~il~Vvd~~~~~~-~~~~~~~~l~~~ 105 (119)
....+|++++|+|+++... ....+.+++...
T Consensus 101 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~ 132 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL 132 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT
T ss_pred cCcCceEEEEEecCCCCCCHHHHHHHHHHHHc
Confidence 4455699999999987522 223344445444
No 105
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.66 E-value=4.7e-16 Score=100.22 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=56.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC--CeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK--GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+..... .+..++.......+.++ ...+.+|||||..+... ....+++.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~ 75 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------MRDLYMKNG 75 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC-SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-------HHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHhccC
Confidence 589999999999999999999765422 22222222222333344 34688999999644321 233456789
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 76 d~~i~v~d~~~~ 87 (167)
T 1c1y_A 76 QGFALVYSITAQ 87 (167)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 106
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.66 E-value=6.2e-17 Score=121.39 Aligned_cols=91 Identities=25% Similarity=0.294 Sum_probs=63.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHH-HHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRG-RQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~-~~~~~~~~~~ 79 (119)
++|+++|.||||||||+|+|++... .++..+++|.+.....+.+++..+.+|||||+.+.....+..+ .....+++.+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~a 304 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTA 304 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcC
Confidence 5799999999999999999997654 4667788888888888889999999999999855322222111 2244567899
Q ss_pred CEEEEEEeCCCCc
Q psy6249 80 DLVLMMLDATKQD 92 (119)
Q Consensus 80 d~il~Vvd~~~~~ 92 (119)
|++++|+|++++.
T Consensus 305 D~vl~VvD~s~~~ 317 (462)
T 3geh_A 305 DLVLLTIDAATGW 317 (462)
T ss_dssp SEEEEEEETTTCS
T ss_pred CEEEEEeccCCCC
Confidence 9999999999863
No 107
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.66 E-value=6.8e-16 Score=103.20 Aligned_cols=94 Identities=12% Similarity=0.160 Sum_probs=61.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE--CCeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY--KGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++...... +..++.......+.. ....+.+|||||..+..... ..+++.+
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~ 96 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEFSEG-YDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP-------YSFIIGV 96 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSC-CCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCC-------GGGTTTC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCC-CCCccceEEEEEEEECCEEEEEEEEECCCccchHHHH-------HHHHhcC
Confidence 5899999999999999999997765322 222222222223332 35678999999965443222 2467899
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
|++++|+|++++ ..++.+..++..
T Consensus 97 d~~i~v~d~~~~-~s~~~~~~~~~~ 120 (201)
T 3oes_A 97 HGYVLVYSVTSL-HSFQVIESLYQK 120 (201)
T ss_dssp CEEEEEEETTCH-HHHHHHHHHHHH
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHH
Confidence 999999999986 334444444433
No 108
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.66 E-value=5.2e-16 Score=115.50 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=64.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc----ch-HHHHHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG----KG-RGRQVIAV 75 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~----~~-~~~~~~~~ 75 (119)
++|+++|+||||||||+|+|++... .+++.+++|..+..+.+.+++..+.+|||||+....... .. .......+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 5899999999999999999998765 578889999999999999999999999999974332111 00 01223457
Q ss_pred hcCCCEEEEEEeCCCC
Q psy6249 76 ARTADLVLMMLDATKQ 91 (119)
Q Consensus 76 ~~~~d~il~Vvd~~~~ 91 (119)
++.+|++++|+|+++.
T Consensus 261 i~~ad~vllv~d~~~~ 276 (439)
T 1mky_A 261 IEKADVVVIVLDATQG 276 (439)
T ss_dssp HHHCSEEEEEEETTTC
T ss_pred HhhCCEEEEEEeCCCC
Confidence 7889999999999875
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.66 E-value=6.7e-16 Score=102.25 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=52.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc--ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc---chHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS--EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG---KGRGRQVIAVA 76 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~---~~~~~~~~~~~ 76 (119)
++|+++|.+|||||||+|+|++... .....+++|...... .. +..+.+|||||+....... ..+......++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--II-NDELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE--EE-CCcEEEEECCCCCccccCHHHHHHHHHHHHHHH
Confidence 6899999999999999999997752 334445555444332 23 3479999999975542221 11111122334
Q ss_pred cCC---CEEEEEEeCCCC
Q psy6249 77 RTA---DLVLMMLDATKQ 91 (119)
Q Consensus 77 ~~~---d~il~Vvd~~~~ 91 (119)
+.+ |++++|+|++++
T Consensus 101 ~~~~~~~~~i~v~d~~~~ 118 (195)
T 1svi_A 101 TTREELKAVVQIVDLRHA 118 (195)
T ss_dssp HHCTTEEEEEEEEETTSC
T ss_pred hhhhcCCEEEEEEECCCC
Confidence 444 999999999986
No 110
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.66 E-value=7.7e-17 Score=107.56 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=38.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc-CCCCCce-eeeeeeEEEECC----eeEEEEeCCcccccccccchHHHHHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA-ASYEFTT-LTCIPGVIEYKG----ANIQLLDLPGIIEGAAQGKGRGRQVIAV 75 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~-~~~~~~t-~~~~~~~~~~~~----~~~~~~DtpG~~~~~~~~~~~~~~~~~~ 75 (119)
++|+++|.+|||||||+|+|.+..... ..+..++ .+.....+.+++ ..+.+|||||... ....+..+
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~ 93 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL-------YKEQISQY 93 (208)
T ss_dssp EEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHH-------HHHHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH-------HHHHHHHH
Confidence 589999999999999999999773222 2222222 234455566664 4789999999632 22234456
Q ss_pred hcCCCEEEEEEeCCCC
Q psy6249 76 ARTADLVLMMLDATKQ 91 (119)
Q Consensus 76 ~~~~d~il~Vvd~~~~ 91 (119)
++.+|++++|+|++++
T Consensus 94 ~~~~d~~i~v~d~~~~ 109 (208)
T 2yc2_C 94 WNGVYYAILVFDVSSM 109 (208)
T ss_dssp CCCCCEEEEEEETTCH
T ss_pred HhhCcEEEEEEECCCH
Confidence 7899999999999986
No 111
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.66 E-value=3.8e-16 Score=105.40 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=55.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC-C--eeEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK-G--ANIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
++|+++|.+|||||||+|+|++........+..........+... + ..+.+|||||........ ..+++.
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~ 84 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK-------DVYYIG 84 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC-------HHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH-------HHHhhc
Confidence 589999999999999999999765421111111111111122222 2 568999999975443222 245688
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|++++
T Consensus 85 ~d~~i~v~d~~~~ 97 (218)
T 4djt_A 85 ASGAILFFDVTSR 97 (218)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEeCCCH
Confidence 9999999999986
No 112
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.66 E-value=4.4e-16 Score=104.10 Aligned_cols=84 Identities=17% Similarity=0.123 Sum_probs=59.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++++........+.++.......+.+++. .+.+|||||..... ......+++.+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~~~~~~~~~~~ 97 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG------GWLRDHCLQTG 97 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG------HHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch------hhhHHHhhccC
Confidence 58999999999999999999865443334444444445555666664 56789999964321 11122356789
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 98 d~~ilv~d~~~~ 109 (195)
T 3cbq_A 98 DAFLIVFSVTDR 109 (195)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 113
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=9.6e-16 Score=102.00 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=57.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++...... +..+........+.+++ ..+.+|||||... ......+++.+
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~ 99 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRFIWE-YDPTLESTYRHQATIDDEVVSMEILDTAGQED--------TIQREGHMRWG 99 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC--------CHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCCCCceEEEEEEECCEEEEEEEEECCCCCc--------ccchhhhhccC
Confidence 5899999999999999999997654222 22222222233344554 5689999999654 12334567889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 100 d~iilv~D~~~~ 111 (196)
T 2atv_A 100 EGFVLVYDITDR 111 (196)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 114
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=1.3e-15 Score=98.38 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=55.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+........+.. .......+..++ ..+.+|||||..+. ......+++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~~~~~ 75 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-EDTYRQVISCDKSICTLQITDTTGSHQF-------PAMQRLSISKG 75 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCS-CEEEEEEEEETTEEEEEEEEECCSCSSC-------HHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc-cccEEEEEEECCEEEEEEEEECCCchhh-------HHHHHHhcccC
Confidence 689999999999999999999765432222111 111122233333 46899999996432 22344566789
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 76 ~~~i~v~d~~~~ 87 (172)
T 2erx_A 76 HAFILVYSITSR 87 (172)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 115
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.65 E-value=2.4e-16 Score=117.13 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=72.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCe-eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGA-NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~-~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|+|||||+|+|++... .++..+++|..+....+.+.+. .+.+|||||+.+....+.........+++.+
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~a 114 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRA 114 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcC
Confidence 5899999999999999999998776 4567788888888888888766 8999999999776544333345566788999
Q ss_pred CEEEEEEeCCCCchhHHHHHHHHHHcC
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKELESVG 106 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l~~~~ 106 (119)
|++++|+|++ .......+..++...+
T Consensus 115 D~vllVvD~~-~~~~~~~~l~~l~~~~ 140 (423)
T 3qq5_A 115 DCGILVTDSA-PTPYEDDVVNLFKEME 140 (423)
T ss_dssp SEEEEECSSS-CCHHHHHHHHHHHHTT
T ss_pred CEEEEEEeCC-ChHHHHHHHHHHHhcC
Confidence 9999999993 3345555666665553
No 116
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.65 E-value=1.5e-15 Score=100.30 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=54.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++.... ..+..++.......+..++. .+.+|||||..+. ......+++.+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 93 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-------SAMRDQYMRTG 93 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------CTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCc-cccCCccceEEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHhhCcC
Confidence 58999999999999999999976532 23333333334445555553 5889999995432 12234567899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 94 d~~i~v~d~~~~ 105 (190)
T 3con_A 94 EGFLCVFAINNS 105 (190)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 117
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.65 E-value=8.7e-16 Score=102.35 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=56.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++++... ...+..++.......+.+++. .+.+|||||........ ..+++++
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~~ 92 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLR-------PLCYTNT 92 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSG-------GGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHh-------HhhcCCC
Confidence 5899999999999999999997653 233344444444445566664 56799999975543222 2367899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 93 ~~~i~v~d~~~~ 104 (201)
T 2q3h_A 93 DIFLLCFSVVSP 104 (201)
T ss_dssp SEEEEEEETTCH
T ss_pred cEEEEEEECCCH
Confidence 999999999986
No 118
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.64 E-value=1.9e-15 Score=96.92 Aligned_cols=82 Identities=17% Similarity=0.129 Sum_probs=56.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+.... ..+..++.......+..++ ..+.+|||||..+.. .....+++.+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 75 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 75 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHhhccC
Confidence 58999999999999999999876542 2222233233334445554 457899999954321 2233466789
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 76 ~~~i~v~d~~~~ 87 (166)
T 2ce2_X 76 EGFLCVFAINNT 87 (166)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 119
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.64 E-value=2.5e-15 Score=99.54 Aligned_cols=81 Identities=10% Similarity=0.092 Sum_probs=55.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++++.... ..+..++.......+..++ ..+.+|||||...... ...+++.+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~~ 92 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRFI-SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN--------CERYLNWA 92 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC--------THHHHTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh--------HHHHHhhC
Confidence 58999999999999999999976532 2333333222223344444 4678999999654321 12467889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 93 ~~~ilv~d~~~~ 104 (187)
T 3c5c_A 93 HAFLVVYSVDSR 104 (187)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 120
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.64 E-value=1.5e-15 Score=100.80 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=57.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++++.... ..+..++.......+.+++. .+.+|||||..+... ....+++++
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 95 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEIP-TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR-------LRPLSYADS 95 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT-------TGGGGCTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC-CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH-------HhHhhccCC
Confidence 58999999999999999999977642 22222332233334455554 469999999543322 223467899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 96 d~~i~v~d~~~~ 107 (194)
T 3reg_A 96 DVVLLCFAVNNR 107 (194)
T ss_dssp SEEEEEEETTCH
T ss_pred cEEEEEEECCCH
Confidence 999999999986
No 121
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.63 E-value=1.9e-15 Score=99.05 Aligned_cols=82 Identities=16% Similarity=0.117 Sum_probs=56.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||++++++.... ..+..++.......+.+++. .+.+|||||....... ...+++.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~ 77 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL-------RPLSYPQT 77 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTT-------GGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHH-------HHHhccCC
Confidence 58999999999999999999965542 22222332222334445554 5669999997543221 22367899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 78 d~~i~v~d~~~~ 89 (186)
T 1mh1_A 78 DVSLICFSLVSP 89 (186)
T ss_dssp SEEEEEEETTCH
T ss_pred cEEEEEEECCCh
Confidence 999999999986
No 122
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.63 E-value=7e-16 Score=105.35 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=54.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceee--eeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLT--CIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (119)
+||+++|.+|||||||++++.......... +|.. .....+..++ ..+.+|||+|..+... ....+++
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~--~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~-------l~~~~~~ 84 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--ATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS-------LIPSYIR 84 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSCEEEEEEECCSCTTTCGG-------GHHHHHT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcC--CccceEEEEEEEEecceEEEEEEEECCCchhhhh-------HHHHHhc
Confidence 689999999999999999998655422211 2222 2222333444 4678999999644321 2335779
Q ss_pred CCCEEEEEEeCCCC
Q psy6249 78 TADLVLMMLDATKQ 91 (119)
Q Consensus 78 ~~d~il~Vvd~~~~ 91 (119)
.+|++++|+|.+++
T Consensus 85 ~a~~~ilv~di~~~ 98 (216)
T 4dkx_A 85 DSAAAVVVYDITNV 98 (216)
T ss_dssp TCSEEEEEEETTCH
T ss_pred cccEEEEEeecchh
Confidence 99999999999986
No 123
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.63 E-value=1.6e-15 Score=101.91 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=57.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||++++++.... ..+..++.......+.+++. .+.+|||||...... ....+++.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 102 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR-------LRPLSYPQT 102 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT-------TGGGGCTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHhCCCC-CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHhccC
Confidence 68999999999999999999965542 23333443444444555554 455999999744322 123467899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 103 d~~i~v~d~~~~ 114 (204)
T 4gzl_A 103 DVFLICFSLVSP 114 (204)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 124
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.63 E-value=1.1e-15 Score=100.96 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=61.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCC--------CCceeeeeeeEE---EE--CCeeEEEEeCCcccccccccchH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASY--------EFTTLTCIPGVI---EY--KGANIQLLDLPGIIEGAAQGKGR 68 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~--------~~~t~~~~~~~~---~~--~~~~~~~~DtpG~~~~~~~~~~~ 68 (119)
++|+++|.+|||||||+|.+.+........ ..+|........ .. ....+.+|||||....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------- 87 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY------- 87 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC-------
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH-------
Confidence 589999999999999999998755422110 112222111111 11 2346899999996432
Q ss_pred HHHHHHHhcCCCEEEEEEeCCCC-----chhHHHHHHHHHHc
Q psy6249 69 GRQVIAVARTADLVLMMLDATKQ-----DVQRGLLEKELESV 105 (119)
Q Consensus 69 ~~~~~~~~~~~d~il~Vvd~~~~-----~~~~~~~~~~l~~~ 105 (119)
...+..+++++|++++|+|++++ .+.++.+.+++...
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~ 129 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY 129 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh
Confidence 22344577999999999999954 23445555566555
No 125
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.63 E-value=3.5e-15 Score=98.80 Aligned_cols=86 Identities=13% Similarity=0.051 Sum_probs=59.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++++........ +|.......+.+++. .+.+|||||.... ++++.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------~~~~~~ 86 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEES--PEGGRFKKEIVVDGQSYLLLIRDEGGPPEL------------QFAAWV 86 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCCCCC--TTCEEEEEEEEETTEEEEEEEEECSSSCCH------------HHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CCcceEEEEEEECCEEEEEEEEECCCChhh------------heecCC
Confidence 589999999999999999998765432222 223333345666664 5677999995321 166789
Q ss_pred CEEEEEEeCCCCchhHHHHHHHH
Q psy6249 80 DLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 80 d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
|++++|+|++++ ..++.+..++
T Consensus 87 ~~~i~v~d~~~~-~s~~~~~~~~ 108 (184)
T 3ihw_A 87 DAVVFVFSLEDE-ISFQTVYNYF 108 (184)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHH
T ss_pred CEEEEEEECcCH-HHHHHHHHHH
Confidence 999999999986 3334433343
No 126
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=1.2e-15 Score=101.20 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=58.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++.... ..+..++.......+.+++ ..+.+|||||..+.... ...+++++
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~ 90 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL-------RPLSYPMT 90 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT-------GGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH-------HHHhcCCC
Confidence 58999999999999999999976532 2233333223333455555 57889999997543322 22467899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 91 d~~i~v~d~~~~ 102 (194)
T 2atx_A 91 DVFLICFSVVNP 102 (194)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 127
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=4.7e-15 Score=98.32 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=55.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++........+ +........+..++ ..+.+|||||..+. ......+++.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 80 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP-TIEDTYRQVISCDKSVCTLQITDTTGSHQF-------PAMQRLSISKG 80 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCTTSC-CCCEEEEEEEEETTEEEEEEEEECCGGGSC-------HHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCcccC-ccccceeEEEEECCEEEEEEEEeCCChHHh-------HHHHHHhhccC
Confidence 5899999999999999999997654322111 11111122233343 47899999995432 22334466889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 81 d~~i~v~d~~~~ 92 (199)
T 2gf0_A 81 HAFILVFSVTSK 92 (199)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999985
No 128
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=102.53 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=47.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++.... ..+..++.......+.+++. .+.+|||||..+. ......+++++
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~~~~ 106 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY-------DRLRPLFYPDA 106 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------CE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCchhh-------hHHHHHHhccC
Confidence 58999999999999999999976542 22222332333334455554 6889999995432 12233467899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 107 d~~i~v~d~~~~ 118 (214)
T 2j1l_A 107 SVLLLCFDVTSP 118 (214)
T ss_dssp EEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999986
No 129
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.62 E-value=5.7e-15 Score=98.61 Aligned_cols=83 Identities=22% Similarity=0.176 Sum_probs=59.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|++|||||||+|+|++........+..+.....+.+.+++. .+.+||+||........ ..+++.+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~-------~~~~~~~ 78 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT-------SAYYRGA 78 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC-------HHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhh-------HHHHhcC
Confidence 58999999999999999999987654333333334556677778775 56789999965432211 2345789
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|+++.
T Consensus 79 ~~~i~v~d~~~~ 90 (199)
T 2f9l_A 79 VGALLVYDIAKH 90 (199)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999985
No 130
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.62 E-value=5.1e-15 Score=99.60 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=57.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC---CeeEEEEeCCcccccccccchHHH-HHHHHhc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK---GANIQLLDLPGIIEGAAQGKGRGR-QVIAVAR 77 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~DtpG~~~~~~~~~~~~~-~~~~~~~ 77 (119)
++|+++|.+|||||||+++|++... ...++.++ .....+.++ +..+.+|||||... +.. .+..+++
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~ 77 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHES-------LRFQLLDRFKS 77 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCS--CEEEEEECSSTTCCEEEEEECCCCHH-------HHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-ccccCCcc--eeeEEEEecCCCccEEEEEECCCChh-------HHHHHHHHHHh
Confidence 6899999999999999999997653 22233222 333346666 56899999999643 222 2334678
Q ss_pred CCCEEEEEEeCCCC
Q psy6249 78 TADLVLMMLDATKQ 91 (119)
Q Consensus 78 ~~d~il~Vvd~~~~ 91 (119)
.+|++++|+|+++.
T Consensus 78 ~~~~~i~v~d~~~~ 91 (214)
T 2fh5_B 78 SARAVVFVVDSAAF 91 (214)
T ss_dssp GEEEEEEEEETTTH
T ss_pred hCCEEEEEEECCCc
Confidence 99999999999984
No 131
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.62 E-value=8e-16 Score=101.85 Aligned_cols=83 Identities=18% Similarity=0.301 Sum_probs=53.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|+|++...... ..+..+..+ ..+.+..+.+|||||........ ...+...+..+|+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~~~~---~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~---~~~~~~~~~~~~~ 121 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKL---SDYLKTRAKFVKG 121 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC----------------CCCCTTCSEEEETTCCBSSCCH---HHHHHHHGGGEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc---cccCCCcee-eeecCCeEEEEECCCCchHHHHH---HHHHHhhcccCCE
Confidence 6899999999999999999997653211 000111111 11256788999999986543322 2223334566999
Q ss_pred EEEEEeCC-CC
Q psy6249 82 VLMMLDAT-KQ 91 (119)
Q Consensus 82 il~Vvd~~-~~ 91 (119)
+++|+|++ +.
T Consensus 122 ~i~v~d~~~~~ 132 (193)
T 2ged_A 122 LIFMVDSTVDP 132 (193)
T ss_dssp EEEEEETTCCH
T ss_pred EEEEEECCCCc
Confidence 99999999 43
No 132
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.62 E-value=4e-15 Score=105.73 Aligned_cols=44 Identities=23% Similarity=0.411 Sum_probs=30.1
Q ss_pred CeeEEEEeCCccccccc----c--cchHHHHHHHHhcCCCEEEEEEeCCC
Q psy6249 47 GANIQLLDLPGIIEGAA----Q--GKGRGRQVIAVARTADLVLMMLDATK 90 (119)
Q Consensus 47 ~~~~~~~DtpG~~~~~~----~--~~~~~~~~~~~~~~~d~il~Vvd~~~ 90 (119)
+.++.+|||||+..... . ...+...+..+++.+|++++|+|+++
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 46899999999865221 1 11244556678899999999999754
No 133
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.62 E-value=2.5e-15 Score=100.48 Aligned_cols=82 Identities=16% Similarity=0.108 Sum_probs=57.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++++........+..+ ......+.+++ ..+.+|||||..+.... ...+++.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~~~~ 97 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQEDYDRL-------RPLSYPDT 97 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSC-CCCEEEEEETTEEEEEEEECCCCSGGGTTT-------GGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCcccCCccc-ceEEEEEEECCEEEEEEEEECCCchhHHHH-------HHHhcCCC
Confidence 5899999999999999999997665322222222 22223345555 47889999996443221 22367899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 98 d~~i~v~d~~~~ 109 (201)
T 2gco_A 98 DVILMCFSIDSP 109 (201)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 134
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.61 E-value=2.2e-15 Score=101.23 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=57.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||++++.+.... ..+..++.......+.+++ ..+.+|||||....... +..+++++
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~ 81 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRL-------RPLSYRGA 81 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC---------CGGGTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHH-------HHhhccCC
Confidence 58999999999999999999976542 2232333222333444554 47899999997543221 22367899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 82 d~~ilv~d~~~~ 93 (212)
T 2j0v_A 82 DIFVLAFSLISK 93 (212)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 135
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=3.1e-15 Score=100.49 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=55.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+...... +..++.......+..++ ..+.+|||||..+.... ...+++.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~ 97 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL-------RPLSYPDT 97 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCTTT-------GGGGCTTC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCc-CCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHH-------HHhhcCCC
Confidence 5899999999999999999997664322 22222222223345555 46889999996543221 22367899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 98 d~~i~v~d~~~~ 109 (207)
T 2fv8_A 98 DVILMCFSVDSP 109 (207)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 136
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.61 E-value=6.9e-16 Score=104.52 Aligned_cols=83 Identities=11% Similarity=0.029 Sum_probs=56.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCC-c-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQ-S-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~-~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++.... . ......+.+.......+...+..+.+|||||........ ..+++++
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~~ 88 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR-------DGYYIQA 88 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCC-------HHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHH-------HHHHhcC
Confidence 589999999999999999955322 1 223334444443333332234678999999964432222 3466899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 89 ~~~i~v~d~~~~ 100 (221)
T 3gj0_A 89 QCAIIMFDVTSR 100 (221)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 137
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.61 E-value=7.3e-16 Score=101.84 Aligned_cols=95 Identities=17% Similarity=0.126 Sum_probs=55.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEE--EE-----CCeeEEEEeCCcccccccccchHHHHHH
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVI--EY-----KGANIQLLDLPGIIEGAAQGKGRGRQVI 73 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~--~~-----~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 73 (119)
.++|+++|.+|||||||+|++.+..........+|........ .. ....+.+|||||..+... ...
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~ 74 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS-------THP 74 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT-------TSH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH-------hhH
Confidence 3689999999999999999999753221111122222222211 11 356789999999643221 112
Q ss_pred HHhcCCCEEEEEEeCCCCchhHHHHHHHH
Q psy6249 74 AVARTADLVLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 74 ~~~~~~d~il~Vvd~~~~~~~~~~~~~~l 102 (119)
.+++++|++++|+|.+++...++.+..++
T Consensus 75 ~~~~~~~~~i~v~d~~~~~~s~~~~~~~~ 103 (184)
T 2zej_A 75 HFMTQRALYLAVYDLSKGQAEVDAMKPWL 103 (184)
T ss_dssp HHHHHSEEEEEEEEGGGCHHHHHTHHHHH
T ss_pred HHccCCcEEEEEEeCCcchhHHHHHHHHH
Confidence 35677999999999998744444444444
No 138
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.60 E-value=5.4e-15 Score=106.48 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=62.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
++|+++|.+|||||||+|+|++.... ... +|.......+...+..+.+|||||...... ....+++.+|+
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~~~-~~~--pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ad~ 235 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRP-------LWRHYFQNTQG 235 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSCCE-EEE--EETTEEEEEEEETTEEEEEEECC-----CC-------SHHHHHTTEEE
T ss_pred ceEEEECCCCccHHHHHHHHhCCCCC-Ccc--cccceEEEEEecCcEEEEEEECCCCHhHHH-------HHHHHhccCCE
Confidence 48999999999999999999876642 122 355566667777889999999999533221 23456789999
Q ss_pred EEEEEeCCCCchhHHHHHHHH
Q psy6249 82 VLMMLDATKQDVQRGLLEKEL 102 (119)
Q Consensus 82 il~Vvd~~~~~~~~~~~~~~l 102 (119)
+++|+|++++ ..++.+..++
T Consensus 236 vilV~D~~~~-~s~~~~~~~~ 255 (329)
T 3o47_A 236 LIFVVDSNDR-ERVNEAREEL 255 (329)
T ss_dssp EEEEEETTCS-SSHHHHHHHH
T ss_pred EEEEEECCch-HHHHHHHHHH
Confidence 9999999986 3334443333
No 139
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.60 E-value=9.1e-15 Score=102.64 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=52.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCC------CceeeeeeeE--EEECC--eeEEEEeCCcccccccc---cchH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYE------FTTLTCIPGV--IEYKG--ANIQLLDLPGIIEGAAQ---GKGR 68 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~------~~t~~~~~~~--~~~~~--~~~~~~DtpG~~~~~~~---~~~~ 68 (119)
++|+++|.+|+|||||+|+|++.......++ .+|....... +..++ ..+.+|||||+.+.... +..+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i 88 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 88 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHH
Confidence 5899999999999999999988776444432 2333333333 33334 38999999998544222 2222
Q ss_pred H----HHHHHHhc-------------CCCEEEEEEeCCC
Q psy6249 69 G----RQVIAVAR-------------TADLVLMMLDATK 90 (119)
Q Consensus 69 ~----~~~~~~~~-------------~~d~il~Vvd~~~ 90 (119)
. .++..++. .+|+++++++.+.
T Consensus 89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~ 127 (274)
T 3t5d_A 89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 127 (274)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCC
T ss_pred HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCC
Confidence 1 12233333 2789999998776
No 140
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.60 E-value=1e-15 Score=100.15 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=49.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC--CeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK--GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++.+.... ..+..++.......+..+ ...+.+|||||..+.... ...+++++
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~ 80 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL-------RPLSYRGA 80 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------CEEECCCC-CTTTTT-------GGGGGTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh-------HHhhccCC
Confidence 68999999999999999999976532 222222211111112223 345679999996443221 23467899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 81 d~~i~v~d~~~~ 92 (182)
T 3bwd_D 81 DVFILAFSLISK 92 (182)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 141
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.60 E-value=4.2e-15 Score=97.98 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=55.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|.+..... .+..+........+.+++ ..+.+|||||....... ...+++.+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~ 79 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV-------RPLSYPDS 79 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT-------GGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhh-------HHhhcCCC
Confidence 589999999999999999999765422 222222112222334443 57899999996443221 12366899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 80 ~~~i~v~d~~~~ 91 (184)
T 1m7b_A 80 DAVLICFDISRP 91 (184)
T ss_dssp SEEEEEEETTCH
T ss_pred cEEEEEEECCCH
Confidence 999999999986
No 142
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.60 E-value=1.4e-14 Score=96.47 Aligned_cols=83 Identities=24% Similarity=0.225 Sum_probs=62.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeE--EEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANI--QLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|++|||||||+|++++........+..+.....+.+.+++..+ .+||+||........ ..+++.+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~-------~~~~~~~ 102 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT-------SAYYRGA 102 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC-------HHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh-------HHHhhcC
Confidence 5899999999999999999998765444444445556677788887654 569999975432211 2355789
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
+++++|+|.++.
T Consensus 103 ~~~i~v~d~~~~ 114 (191)
T 1oix_A 103 VGALLVYDIAKH 114 (191)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999875
No 143
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.59 E-value=6.2e-15 Score=99.80 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=56.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEEC--CeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYK--GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++..... .+..+........+..+ ...+.+|||||....... ...+++.+
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~~~~ 99 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNV-------RPLCYSDS 99 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTT-------GGGGCTTC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHH-------HHHHcCCC
Confidence 689999999999999999999766432 22222222222223333 357899999996443221 22467899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 100 d~~i~v~d~~~~ 111 (214)
T 3q3j_B 100 DAVLLCFDISRP 111 (214)
T ss_dssp SEEEEEEETTCT
T ss_pred eEEEEEEECcCH
Confidence 999999999997
No 144
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.59 E-value=3.4e-15 Score=98.24 Aligned_cols=87 Identities=23% Similarity=0.238 Sum_probs=58.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccc----cch---HHHHHH
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ----GKG---RGRQVI 73 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~----~~~---~~~~~~ 73 (119)
+++|+++|.+|||||||+|++++........+++|..... +.+. .+.+|||||+...... ... ....+.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999887666666666544333 3333 7899999996432110 111 112233
Q ss_pred HH-hcCCCEEEEEEeCCCC
Q psy6249 74 AV-ARTADLVLMMLDATKQ 91 (119)
Q Consensus 74 ~~-~~~~d~il~Vvd~~~~ 91 (119)
+. ...++++++|+|+++.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~ 95 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAA 95 (190)
T ss_dssp HHHGGGCCEEEEEEETTHH
T ss_pred HhhhccCCEEEEEEcchhh
Confidence 33 5667889999998653
No 145
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.58 E-value=8.5e-15 Score=97.55 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=61.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEE--E---ECCeeEEEEeCCcccccccccchHHHHHHHH
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVI--E---YKGANIQLLDLPGIIEGAAQGKGRGRQVIAV 75 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~--~---~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~ 75 (119)
.++|+++|.+|||||||+|++++..... .. .+.......+ . .....+.+|||||......... ....+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----~~~~~ 92 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN-ET--LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF----DYEMI 92 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG-GG--GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTC----CHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc-ce--eeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhh----hcccc
Confidence 3699999999999999999998754322 11 1111111111 2 2346899999999644221110 00356
Q ss_pred hcCCCEEEEEEeCCCC-chhHHHHHHHHHH
Q psy6249 76 ARTADLVLMMLDATKQ-DVQRGLLEKELES 104 (119)
Q Consensus 76 ~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~ 104 (119)
++++|++++|+|++++ .+.++.+.+++..
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~ 122 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSK 122 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHH
Confidence 7889999999999986 2344555555544
No 146
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.58 E-value=7.1e-15 Score=99.04 Aligned_cols=82 Identities=16% Similarity=0.125 Sum_probs=56.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|+|++...... +..+........+.+++ ..+.+|||||....... ...+++.+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~~~~ 100 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFPEN-YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV-------RPLSYPDS 100 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSS-CCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT-------GGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH-------HHhhccCC
Confidence 5899999999999999999997654322 22222122222344443 57899999996443221 12366899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 101 d~~ilv~D~~~~ 112 (205)
T 1gwn_A 101 DAVLICFDISRP 112 (205)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999986
No 147
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.57 E-value=5.2e-14 Score=99.11 Aligned_cols=90 Identities=13% Similarity=0.183 Sum_probs=57.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc------cCCCCC----------------------ceeeee--------------
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE------AASYEF----------------------TTLTCI-------------- 39 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~------~~~~~~----------------------~t~~~~-------------- 39 (119)
++|+++|.+|||||||+|+|++.... ++..|+ +|....
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~ 106 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 106 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhccc
Confidence 58999999999999999999987642 122232 111100
Q ss_pred -ee------E--EEE-CCeeEEEEeCCcccccc----ccc--chHHHHHHHHhcCCCEEE-EEEeCCCC
Q psy6249 40 -PG------V--IEY-KGANIQLLDLPGIIEGA----AQG--KGRGRQVIAVARTADLVL-MMLDATKQ 91 (119)
Q Consensus 40 -~~------~--~~~-~~~~~~~~DtpG~~~~~----~~~--~~~~~~~~~~~~~~d~il-~Vvd~~~~ 91 (119)
.+ . +.. ....+.+|||||+.... ++. ..+...+..+++.++.++ +|+|+++.
T Consensus 107 ~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~ 175 (299)
T 2aka_B 107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD 175 (299)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC
T ss_pred CCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc
Confidence 00 0 011 13689999999987532 111 123344556788888666 79999875
No 148
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.56 E-value=6.5e-14 Score=101.69 Aligned_cols=90 Identities=17% Similarity=0.191 Sum_probs=57.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeee-----------------------------------------
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIP----------------------------------------- 40 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~----------------------------------------- 40 (119)
++|+++|.+|||||||+|+|++..........+|..+..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 589999999999999999999865411111111111100
Q ss_pred -----------eEEE---ECCeeEEEEeCCcccccccc-----c-chHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 41 -----------GVIE---YKGANIQLLDLPGIIEGAAQ-----G-KGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 41 -----------~~~~---~~~~~~~~~DtpG~~~~~~~-----~-~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
-.+. .....+++|||||+...... . ..+...+..+++.+|++++|+|+++.
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~ 185 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ 185 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC
Confidence 0111 12457899999998765221 1 12334456688999999999998654
No 149
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.56 E-value=4.2e-14 Score=105.39 Aligned_cols=83 Identities=18% Similarity=0.154 Sum_probs=64.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc-------------------------------CCCCCceeeeeeeEEEECCeeE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA-------------------------------ASYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 50 (119)
++|+++|.+|+|||||+|+|.+....+ ...++.|.+.....+..++..+
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~ 97 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHF 97 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEE
Confidence 589999999999999999996432211 1124567777777788888999
Q ss_pred EEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.+|||||..+ +...+...+.++|++++|+|+++.
T Consensus 98 ~iiDTPGh~~-------f~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 98 TILDAPGHKS-------FVPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred EEEECCChHH-------HHHHHHhhHhhCCEEEEEEECCCC
Confidence 9999999532 345566678899999999999985
No 150
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.55 E-value=4.4e-14 Score=106.42 Aligned_cols=83 Identities=23% Similarity=0.245 Sum_probs=59.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCC-------cccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQ-------SEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIA 74 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~-------~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 74 (119)
++|+++|.+++|||||+|+|++.. ......++.|.......+.+++..+.+|||||.. .+...+..
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-------~~~~~~~~ 92 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIRAVVS 92 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------HHHHHHHH
Confidence 589999999999999999999866 1223345667776667778888999999999953 23455667
Q ss_pred HhcCCCEEEEEEeCCCC
Q psy6249 75 VARTADLVLMMLDATKQ 91 (119)
Q Consensus 75 ~~~~~d~il~Vvd~~~~ 91 (119)
.+..+|++++|+|+++.
T Consensus 93 ~~~~aD~~ilVvda~~g 109 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEG 109 (482)
T ss_dssp HTTSCCEEEEEEETTTC
T ss_pred HHhhCCEEEEEEecCCC
Confidence 88999999999999874
No 151
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.54 E-value=3.5e-14 Score=100.89 Aligned_cols=82 Identities=15% Similarity=0.124 Sum_probs=59.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCee--EEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGAN--IQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++++... ...+..++.......+..++.. +.+|||||....... ...+++.+
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 227 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL-------RPLSYPQT 227 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTT-------GGGGCTTC
T ss_pred eEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHH-------HHHhccCC
Confidence 5899999999999999999986654 2333444444444455666655 459999996543221 22467899
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 228 d~~i~v~d~~~~ 239 (332)
T 2wkq_A 228 DVFLICFSLVSP 239 (332)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEeCCCH
Confidence 999999999986
No 152
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3e-14 Score=110.01 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=65.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCC-------------------------------CCCceeeeeeeEEEECCeeE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAAS-------------------------------YEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~ 50 (119)
++|+++|.+|+|||||+|+|++....+.. .++.|.......+...+..+
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~ 247 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 247 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceE
Confidence 58999999999999999999876443222 14667777777788888999
Q ss_pred EEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCC
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATK 90 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~ 90 (119)
.+|||||+.+ +...+...++.+|++|+|+|+++
T Consensus 248 ~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 248 TIVDAPGHRD-------FVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp EEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSH
T ss_pred EEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCC
Confidence 9999999633 34556667899999999999986
No 153
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.54 E-value=9.3e-15 Score=111.16 Aligned_cols=98 Identities=20% Similarity=0.137 Sum_probs=69.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc----------------cC------CCCCceeeeeeeEEEECCeeEEEEeCCccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE----------------AA------SYEFTTLTCIPGVIEYKGANIQLLDLPGII 59 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~----------------~~------~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~ 59 (119)
.+|+|+|.+|||||||+|+|++.... .. ..++.|.......+.+++..+.+|||||+.
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 48999999999999999999621110 00 123456666677788889999999999975
Q ss_pred ccccccchHHHHHHHHhcCCCEEEEEEeCCCCc-hhHHHHHHHHHHcC
Q psy6249 60 EGAAQGKGRGRQVIAVARTADLVLMMLDATKQD-VQRGLLEKELESVG 106 (119)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~~-~~~~~~~~~l~~~~ 106 (119)
+.. ..+.++++.+|++++|+|+++.. .+...+...+...+
T Consensus 94 df~-------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~ 134 (528)
T 3tr5_A 94 DFT-------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRH 134 (528)
T ss_dssp TCC-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTT
T ss_pred hHH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcC
Confidence 532 34667889999999999999852 23333444444443
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.54 E-value=4.6e-14 Score=106.17 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc-------------------------------cCCCCCceeeeeeeEEEECCeeE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE-------------------------------AASYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~ 50 (119)
++|+++|.+|+|||||+|+|++.... ....++.|.......+...+..+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~ 113 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 113 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceE
Confidence 58999999999999999999754211 11123556666666677778899
Q ss_pred EEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.+|||||..+ +.......+..+|++++|+|+++.
T Consensus 114 ~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 114 TIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp EEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC-
T ss_pred EEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCCC
Confidence 9999999633 355667788999999999999984
No 155
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.53 E-value=2.1e-14 Score=96.83 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=51.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccC-CCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHH-HHhcC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAA-SYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVI-AVART 78 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~-~~~~~ 78 (119)
.++|+++|++|||||||+|+|.+...... ....++.... +....+.+|||||...... ....++ .....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~~ 82 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRY----KLSDYLKTRAKF 82 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-----GGGSSCEEEECCCCGGGTH----HHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-----eeCceEEEEECCCcHHHHH----HHHHHHHhcccc
Confidence 36899999999999999999997653211 0111111111 1456889999999754321 112222 12334
Q ss_pred CCEEEEEEeCC
Q psy6249 79 ADLVLMMLDAT 89 (119)
Q Consensus 79 ~d~il~Vvd~~ 89 (119)
+|++++|+|++
T Consensus 83 ~~~~i~v~D~~ 93 (218)
T 1nrj_B 83 VKGLIFMVDST 93 (218)
T ss_dssp EEEEEEEEETT
T ss_pred CCEEEEEEECC
Confidence 89999999999
No 156
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=1.4e-13 Score=93.52 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=54.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc-cCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE-AASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
++|+++|.+|||||||+|++.+.... ...++.++.......+.+++. .+.+|||+|.... .......+++.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~------~~~l~~~~~~~ 111 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE------NEWLHDHCMQV 111 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH------HHHHHHCCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch------hhhHHHHHHhh
Confidence 58999999999999999999975432 222333322333344566665 4578999984321 01111224678
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|.+++
T Consensus 112 a~~~ilVydvt~~ 124 (211)
T 2g3y_A 112 GDAYLIVYSITDR 124 (211)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 9999999999986
No 157
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.27 E-value=9.4e-16 Score=102.62 Aligned_cols=82 Identities=17% Similarity=0.145 Sum_probs=55.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
++|+++|.+|||||||+|++++.... ..+..++.......+..++ ..+.+|||||..+.. .....+++++
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 102 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQT 102 (204)
Confidence 58999999999999999999865542 2222222222223333333 456699999964321 2233467889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|++++
T Consensus 103 d~iilv~D~~~~ 114 (204)
T 3th5_A 103 DVFLICFSLVSP 114 (204)
Confidence 999999999886
No 158
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.51 E-value=1.3e-14 Score=113.36 Aligned_cols=86 Identities=24% Similarity=0.337 Sum_probs=58.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCc--------------eeeeee----e---------------------
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFT--------------TLTCIP----G--------------------- 41 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~--------------t~~~~~----~--------------------- 41 (119)
++|+++|.+|||||||+|+|++... .++..|.+ |+.... .
T Consensus 70 ~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l 149 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKL 149 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHH
Confidence 5899999999999999999998775 34444443 111000 0
Q ss_pred --------------EEEECC----eeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 42 --------------VIEYKG----ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 42 --------------~~~~~~----~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.+.+.. ..+.+|||||+..... ....+..+++++|++++|+|++++
T Consensus 150 ~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~ 213 (695)
T 2j69_A 150 EQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQP 213 (695)
T ss_dssp HTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTST
T ss_pred hhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCc
Confidence 000000 4689999999865321 133455688999999999999876
No 159
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.51 E-value=1.3e-13 Score=91.81 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=53.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc-cCCCCCceeeeeeeEEEECCe--eEEEEeCCcccccccccchHHHHHHHHhcC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE-AASYEFTTLTCIPGVIEYKGA--NIQLLDLPGIIEGAAQGKGRGRQVIAVART 78 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (119)
++|+++|.+|||||||+|++.+.... ...++.++.......+.+++. .+.+|||+|..... ..+ ...+++.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~---~~~---~~~~~~~ 80 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN---EWL---HDHCMQV 80 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------CTT---GGGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh---hhH---HHhhccc
Confidence 58999999999999999999864321 222333322333344566665 45789999954310 001 1124577
Q ss_pred CCEEEEEEeCCCC
Q psy6249 79 ADLVLMMLDATKQ 91 (119)
Q Consensus 79 ~d~il~Vvd~~~~ 91 (119)
+|++++|+|.+++
T Consensus 81 ~~~~i~v~dv~~~ 93 (192)
T 2cjw_A 81 GDAYLIVYSITDR 93 (192)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 9999999999986
No 160
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.50 E-value=8.3e-14 Score=106.41 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=58.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc---cCCCCCceeeeee--e----------------------------------E
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE---AASYEFTTLTCIP--G----------------------------------V 42 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~---~~~~~~~t~~~~~--~----------------------------------~ 42 (119)
++|+++|.+|||||||+|+|++.+.. ++..+.++..... + .
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~ 145 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMC 145 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceE
Confidence 58999999999999999999988752 4555554321100 0 0
Q ss_pred EEECC---eeEEEEeCCcccccccc--cc--hHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 43 IEYKG---ANIQLLDLPGIIEGAAQ--GK--GRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 43 ~~~~~---~~~~~~DtpG~~~~~~~--~~--~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+.+.+ .++.+|||||+...... .+ .+......++..+|++++|+|+++.
T Consensus 146 ~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~ 201 (550)
T 2qpt_A 146 AQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL 201 (550)
T ss_dssp EECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC
T ss_pred EeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC
Confidence 00000 36899999998763221 11 1334455677899999999999874
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.50 E-value=1e-13 Score=102.19 Aligned_cols=98 Identities=16% Similarity=0.094 Sum_probs=66.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc------------C-----CCCCceeeeeeeEEEECCeeEEEEeCCcccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA------------A-----SYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ 64 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~------------~-----~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 64 (119)
++|+++|.+|+|||||+|+|++..... . ...+.|.......+...+..+.+|||||+.+
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~---- 87 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD---- 87 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG----
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH----
Confidence 589999999999999999998631000 0 0123444444444555678999999999653
Q ss_pred cchHHHHHHHHhcCCCEEEEEEeCCCCc-hhHHHHHHHHHHcC
Q psy6249 65 GKGRGRQVIAVARTADLVLMMLDATKQD-VQRGLLEKELESVG 106 (119)
Q Consensus 65 ~~~~~~~~~~~~~~~d~il~Vvd~~~~~-~~~~~~~~~l~~~~ 106 (119)
+.......+..+|++++|+|+++.. .+...+...+...+
T Consensus 88 ---f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ 127 (405)
T 2c78_A 88 ---YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127 (405)
T ss_dssp ---GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 2445667789999999999999862 33333334444433
No 162
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.49 E-value=1.6e-14 Score=105.54 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCC------CcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHT------QSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAV 75 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~ 75 (119)
.+|+++|.+|+|||||+|+|++. ...+++.+++|.......+ +..+.++||||+.........+..+.+.+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe---CCCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 46999999999999999999976 4467788888877655433 23589999999976543332333344455
Q ss_pred h---cCCCEEEEEEeC
Q psy6249 76 A---RTADLVLMMLDA 88 (119)
Q Consensus 76 ~---~~~d~il~Vvd~ 88 (119)
+ +..|+++|++|+
T Consensus 240 ~~~~~~i~~~~~~l~~ 255 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNE 255 (369)
T ss_dssp HSCSSCCCCEEEEECT
T ss_pred HhcccccCceEEEEcC
Confidence 4 788999999998
No 163
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.48 E-value=1.7e-13 Score=104.23 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=59.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc----------------C------CCCCceeeeeeeEEEECCeeEEEEeCCccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA----------------A------SYEFTTLTCIPGVIEYKGANIQLLDLPGII 59 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~----------------~------~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~ 59 (119)
.+|+++|.+|+|||||+++|++....+ . ...+.|.......+.+++..+.+|||||..
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHE 93 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCCh
Confidence 489999999999999999998532211 0 012233334445567788999999999975
Q ss_pred ccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 60 EGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+.. ..+.++++.+|++++|+|+++.
T Consensus 94 df~-------~~~~~~l~~aD~~IlVvDa~~g 118 (529)
T 2h5e_A 94 DFS-------EDTYRTLTAVDCCLMVIDAAKG 118 (529)
T ss_dssp TCC-------HHHHHGGGGCSEEEEEEETTTC
T ss_pred hHH-------HHHHHHHHHCCEEEEEEeCCcc
Confidence 432 3456688999999999999986
No 164
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.48 E-value=4.7e-14 Score=107.18 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=59.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeee--------EEEE----CCeeEEEEeCCcccccccccchHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPG--------VIEY----KGANIQLLDLPGIIEGAAQGKGRG 69 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~--------~~~~----~~~~~~~~DtpG~~~~~~~~~~~~ 69 (119)
++|+++|.+|||||||+|+|++....... ..|...... .+.. .+..+.+|||||........
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~--~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~---- 115 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKE--SQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH---- 115 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC----
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH----
Confidence 58999999999999999999987642111 111111111 1111 25789999999954322211
Q ss_pred HHHHHHhcCCCEEEEEEeCCCCchhHHHHHHHHHHcC
Q psy6249 70 RQVIAVARTADLVLMMLDATKQDVQRGLLEKELESVG 106 (119)
Q Consensus 70 ~~~~~~~~~~d~il~Vvd~~~~~~~~~~~~~~l~~~~ 106 (119)
..+++.+|++++|+|+++. +....+..++..+.
T Consensus 116 ---~~~l~~~d~ii~V~D~s~~-~~~~~~~~~l~~~~ 148 (535)
T 3dpu_A 116 ---QFFMTRSSVYMLLLDSRTD-SNKHYWLRHIEKYG 148 (535)
T ss_dssp ---HHHHHSSEEEEEEECGGGG-GGHHHHHHHHHHHS
T ss_pred ---HHHccCCcEEEEEEeCCCc-hhHHHHHHHHHHhC
Confidence 2345789999999999876 55666767776654
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.48 E-value=5.7e-13 Score=99.04 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=58.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc-----------CCCC----------------------CceeeeeeeEEEECCe
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA-----------ASYE----------------------FTTLTCIPGVIEYKGA 48 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~-----------~~~~----------------------~~t~~~~~~~~~~~~~ 48 (119)
++|+++|.+|+|||||+|+|++....+ +..+ +.|.......+..++.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 589999999999999999997543111 0111 2233333344555678
Q ss_pred eEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 49 NIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 49 ~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.+.+|||||..+ +......++..+|++++|+|+++.
T Consensus 105 ~~~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g 140 (434)
T 1zun_B 105 KFIIADTPGHEQ-------YTRNMATGASTCDLAIILVDARYG 140 (434)
T ss_dssp EEEEEECCCSGG-------GHHHHHHHHTTCSEEEEEEETTTC
T ss_pred eEEEEECCChHH-------HHHHHHHHHhhCCEEEEEEECCCC
Confidence 899999999543 234556678999999999999986
No 166
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.47 E-value=2.5e-13 Score=100.05 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc-CCCCCceeeee-------------------eeEEEECCeeEEEEeCCccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA-ASYEFTTLTCI-------------------PGVIEYKGANIQLLDLPGIIEG 61 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~-~~~~~~t~~~~-------------------~~~~~~~~~~~~~~DtpG~~~~ 61 (119)
++|+++|.+|+|||||+|+|++..... ..+...+.... ..........+.+|||||..
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~-- 86 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE-- 86 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG--
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH--
Confidence 689999999999999999999754311 11111111000 00000112678999999942
Q ss_pred ccccchHHHHHHHHhcCCCEEEEEEeCCCC--chhHHHHHHHHHHcC
Q psy6249 62 AAQGKGRGRQVIAVARTADLVLMMLDATKQ--DVQRGLLEKELESVG 106 (119)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~--~~~~~~~~~~l~~~~ 106 (119)
.+...+...+..+|++++|+|+++. ..+.......+...+
T Consensus 87 -----~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~ 128 (403)
T 3sjy_A 87 -----VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG 128 (403)
T ss_dssp -----GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC
Confidence 3455677788999999999999986 334444444444444
No 167
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.47 E-value=1.5e-13 Score=100.58 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=63.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLV 82 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 82 (119)
+|+++|.+|+|||||+++|+ ..+.|.+.....+..++..+.+|||||..+. .......++.+|++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f-------~~~~~~~~~~aD~a 87 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT-------LKSLITALNISDIA 87 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTC-------HHHHHHHHHTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHH-------HHHHHHHHHHCCEE
Confidence 79999999999999999998 1234555555556667888999999996442 34556677999999
Q ss_pred EEEEeCCCC-chhHHHHHHHHHHcC
Q psy6249 83 LMMLDATKQ-DVQRGLLEKELESVG 106 (119)
Q Consensus 83 l~Vvd~~~~-~~~~~~~~~~l~~~~ 106 (119)
++|+| +.. ..+.......+...+
T Consensus 88 ilVvd-~~g~~~qt~e~~~~~~~~~ 111 (370)
T 2elf_A 88 VLCIP-PQGLDAHTGECIIALDLLG 111 (370)
T ss_dssp EEEEC-TTCCCHHHHHHHHHHHHTT
T ss_pred EEEEc-CCCCcHHHHHHHHHHHHcC
Confidence 99999 543 334444444444444
No 168
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.47 E-value=6.3e-15 Score=112.21 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=64.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE-CCeeEEEEeCCcccccccccchHHHHHHHHhcCC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY-KGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTA 79 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
.++|+++|.+|+|||||+|+|++........++.|.+.....+.+ ++..+++|||||........ .+.++.+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~-------~~~~~~a 76 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR-------ARGTQVT 76 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSB-------BSSSBSB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHH-------HHHHccC
Confidence 368999999999999999999976655555666666655555555 46689999999975543322 2456889
Q ss_pred CEEEEEEeCCCC
Q psy6249 80 DLVLMMLDATKQ 91 (119)
Q Consensus 80 d~il~Vvd~~~~ 91 (119)
|++++|+|+++.
T Consensus 77 D~vILVVDa~dg 88 (537)
T 3izy_P 77 DIVILVVAADDG 88 (537)
T ss_dssp SSCEEECBSSSC
T ss_pred CEEEEEEECCCC
Confidence 999999999985
No 169
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.47 E-value=2.6e-13 Score=90.82 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=57.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc--ccCCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc--c-hHH---HHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS--EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG--K-GRG---RQVI 73 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~--~-~~~---~~~~ 73 (119)
.+|+++|++|||||||+|+|++... .+.+.++++.. .+.+.+++ .+.+|||||+....... . .+. ..+.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~--~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 103 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL--INLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYL 103 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-------------CC--EEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee--eEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHH
Confidence 4799999999999999999998762 22334444432 23344444 78899999975421111 0 111 1233
Q ss_pred HHhcCCCEEEEEEeCCCCchhH-HHHHHHHHHcCC
Q psy6249 74 AVARTADLVLMMLDATKQDVQR-GLLEKELESVGI 107 (119)
Q Consensus 74 ~~~~~~d~il~Vvd~~~~~~~~-~~~~~~l~~~~~ 107 (119)
+....+|++++++|++++.... ..+.+.+...+.
T Consensus 104 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~ 138 (210)
T 1pui_A 104 EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNI 138 (210)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTC
T ss_pred HhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCC
Confidence 3336789999999998863322 234444444443
No 170
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.47 E-value=1.6e-13 Score=107.17 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=59.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc------------cCC------CCCceeeeeeeEEEECCeeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE------------AAS------YEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~------------~~~------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 63 (119)
.+|+++|.+|+|||||+|+|++.... +.. .++.|.......+.+++..+.+|||||+.+..
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~- 89 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT- 89 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH-
Confidence 48999999999999999999842110 111 23556666667788889999999999986532
Q ss_pred ccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 64 QGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 64 ~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
..+.++++.+|++++|+|+++.
T Consensus 90 ------~~~~~~l~~aD~~llVvDa~~g 111 (693)
T 2xex_A 90 ------VEVERSLRVLDGAVTVLDAQSG 111 (693)
T ss_dssp ------HHHHHHHHHCSEEEEEEETTTB
T ss_pred ------HHHHHHHHHCCEEEEEECCCCC
Confidence 3456677889999999999985
No 171
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.46 E-value=5.7e-13 Score=98.05 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=59.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc-----------C-----CCCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA-----------A-----SYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~-----------~-----~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
++|+++|.+++|||||+++|++..... . ...+.|.......+..++..+.+|||||..+
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~----- 78 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD----- 78 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH-----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH-----
Confidence 589999999999999999998631100 0 0223444443333455678999999999643
Q ss_pred chHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 66 KGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 66 ~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+.......+..+|++++|+|+++.
T Consensus 79 --f~~~~~~~~~~aD~~ilVvda~~g 102 (397)
T 1d2e_A 79 --YVKNMITGTAPLDGCILVVAANDG 102 (397)
T ss_dssp --HHHHHHHTSSCCSEEEEEEETTTC
T ss_pred --HHHHHHhhHhhCCEEEEEEECCCC
Confidence 234556678999999999999985
No 172
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.45 E-value=1.5e-12 Score=94.47 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
++|+++|.+|||||||+|+|++...
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCc
Confidence 6899999999999999999998764
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.44 E-value=5.5e-13 Score=104.19 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=58.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc------ccC------C------CCCceeeeeeeEEEECCeeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS------EAA------S------YEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~------~~~------~------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 63 (119)
.+|+++|.+|+|||||+++|..... .+. . ..+.|.......+.+++..+.+|||||..+.
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df-- 90 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF-- 90 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC--
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch--
Confidence 4799999999999999999973110 000 0 2345556666677788899999999997542
Q ss_pred ccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 64 QGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 64 ~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
...+.++++.+|++++|+|+++.
T Consensus 91 -----~~~~~~~l~~aD~~ilVvDa~~g 113 (691)
T 1dar_A 91 -----TIEVERSMRVLDGAIVVFDSSQG 113 (691)
T ss_dssp -----HHHHHHHHHHCSEEEEEEETTTC
T ss_pred -----HHHHHHHHHHCCEEEEEEECCCC
Confidence 34566778899999999999986
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.44 E-value=2.9e-13 Score=101.38 Aligned_cols=83 Identities=16% Similarity=0.090 Sum_probs=62.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC-------------------------------CCCCceeeeeeeEEEECCeeE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA-------------------------------SYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~ 50 (119)
++|+++|.+|+|||||+|+|++...... ...+.|.......+...+..+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~ 87 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 87 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceE
Confidence 5899999999999999999975311000 013456665556677778899
Q ss_pred EEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.+|||||.. .+.......+..+|++++|+|+++.
T Consensus 88 ~iiDtPGh~-------~f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 88 TVIDAPGHR-------DFIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp EEEECCCCT-------THHHHHHHSSSCCSEEEEEEECSHH
T ss_pred EEEECCCcH-------HHHHHHHhhhhhCCEEEEEEeCCcC
Confidence 999999953 2345566778999999999999974
No 175
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.43 E-value=3.9e-13 Score=100.00 Aligned_cols=83 Identities=22% Similarity=0.175 Sum_probs=57.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC-------------------------------CCCCceeeeeeeEEEECCeeE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA-------------------------------SYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~ 50 (119)
++|+++|.+|+|||||+++|++...... ..++.|.......+...+..+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~ 86 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 86 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEE
Confidence 5899999999999999999975311110 123456666666677778899
Q ss_pred EEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.+|||||..+ +...+..++..+|++++|+|+++.
T Consensus 87 ~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvDa~~g 120 (435)
T 1jny_A 87 TIIDAPGHRD-------FVKNMITGASQADAAILVVSAKKG 120 (435)
T ss_dssp EECCCSSSTT-------HHHHHHHTSSCCSEEEEEEECSTT
T ss_pred EEEECCCcHH-------HHHHHHhhhhhcCEEEEEEECCCC
Confidence 9999999643 344566788999999999999984
No 176
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.43 E-value=2.1e-12 Score=95.33 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=57.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc---cCCCCCceeeeeeeEEEE---------------C--------CeeEEEEeC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE---AASYEFTTLTCIPGVIEY---------------K--------GANIQLLDL 55 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~---~~~~~~~t~~~~~~~~~~---------------~--------~~~~~~~Dt 55 (119)
++|+++|.+++|||||+++|++.... ....++.|.........+ . ...+.+|||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 58999999999999999999965431 111234454433222222 0 157999999
Q ss_pred CcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 56 PGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 56 pG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
||..+ +...+.+.+..+|++++|+|+++.
T Consensus 91 PGh~~-------f~~~~~~~~~~~D~~ilVvda~~g 119 (410)
T 1kk1_A 91 PGHEA-------LMTTMLAGASLMDGAILVIAANEP 119 (410)
T ss_dssp SSHHH-------HHHHHHHCGGGCSEEEEEEETTSC
T ss_pred CChHH-------HHHHHHhhhhhCCEEEEEEECCCC
Confidence 99532 344566677889999999999975
No 177
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.43 E-value=3.4e-14 Score=107.44 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=62.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTAD 80 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (119)
.++|+++|.+++|||||+++|++........++.|.......+.+++..+++|||||..+..... .+.+..+|
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~-------~~~~~~aD 76 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR-------ARGAQATD 76 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB-------CSSSBSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH-------HHHHhhCC
Confidence 36899999999999999999986544334444555544444455567889999999976554332 24568899
Q ss_pred EEEEEEeCCCC
Q psy6249 81 LVLMMLDATKQ 91 (119)
Q Consensus 81 ~il~Vvd~~~~ 91 (119)
++++|+|+++.
T Consensus 77 ~aILVVda~~g 87 (501)
T 1zo1_I 77 IVVLVVAADDG 87 (501)
T ss_dssp SEEEEEETTTB
T ss_pred EEEEEeecccC
Confidence 99999999874
No 178
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.42 E-value=3.7e-13 Score=100.99 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=51.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc-------------------------------CCCCCceeeeeeeEEEECCeeE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA-------------------------------ASYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 50 (119)
++|+++|.+++|||||+++|++..... ....+.|+......+.+++..+
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~ 123 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 123 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEE
Confidence 479999999999999999996422100 0123445555555677788899
Q ss_pred EEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.+|||||..+. ...+...+..+|++++|+|+++.
T Consensus 124 ~iiDtPGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 124 SLLDAPGHKGY-------VTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp EECCCCC------------------TTSCSEEEEEEECSTT
T ss_pred EEEECCCcHHH-------HHHHHhhcccCCEEEEEEeCCcC
Confidence 99999996432 33455677899999999999986
No 179
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.40 E-value=1.9e-13 Score=99.92 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=56.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCC-------CcccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHT-------QSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIA 74 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~-------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 74 (119)
.+|+++|.+|+|||||+|+|++. ...++..+++|.......+ . ..+.++||||+.........+..+.+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL--D-EESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES--S-SSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe--c-CCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 47899999999999999999875 2245778888876655433 2 248999999997654322223334443
Q ss_pred H---hcCCCEEEEEEeC
Q psy6249 75 V---ARTADLVLMMLDA 88 (119)
Q Consensus 75 ~---~~~~d~il~Vvd~ 88 (119)
+ .+..+.+++++|+
T Consensus 238 ~~~~~~~i~~~~~~l~~ 254 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNE 254 (368)
T ss_dssp HHSCSSCCCCEEEEECT
T ss_pred HhccccccCceEEEEcC
Confidence 3 3678888999988
No 180
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.40 E-value=5.4e-13 Score=94.34 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=38.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ 64 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 64 (119)
.+|+++|.||||||||+|+|++.+. .+++.+++|+..+. +.. +..+.++||||+......
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~~~~ 181 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGILWPKFE 181 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCCCSCCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcCCCCCC
Confidence 4799999999999999999998774 77788888877653 333 458999999999765433
No 181
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.39 E-value=5.3e-12 Score=93.14 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=55.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc---cCCCCCceeeeeeeEEEE---------------C--------CeeEEEEeC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE---AASYEFTTLTCIPGVIEY---------------K--------GANIQLLDL 55 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~---~~~~~~~t~~~~~~~~~~---------------~--------~~~~~~~Dt 55 (119)
++|+++|..++|||||+++|++.... ....++.|.........+ . ...+.+|||
T Consensus 9 ~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 88 (408)
T 1s0u_A 9 VNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDS 88 (408)
T ss_dssp EEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEEC
Confidence 58999999999999999999965431 111233344332222111 1 157999999
Q ss_pred CcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 56 PGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 56 pG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
||..+ +...+.+.+..+|++++|+|+++.
T Consensus 89 PGh~~-------f~~~~~~~~~~~D~~ilVvda~~g 117 (408)
T 1s0u_A 89 PGHET-------LMATMLSGASLMDGAILVIAANEP 117 (408)
T ss_dssp SSHHH-------HHHHHHTTCSCCSEEEEEEETTSC
T ss_pred CCHHH-------HHHHHHHhHhhCCEEEEEEECCCC
Confidence 99532 334455667788999999999975
No 182
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.39 E-value=7.5e-13 Score=95.41 Aligned_cols=84 Identities=10% Similarity=0.169 Sum_probs=57.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccc-CCCCCceeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEA-ASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADL 81 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (119)
||+++|.+|||||||++++.+..... .....+|.......+. ...++++|||||..+..... + ....+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~--l--~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPS--Y--DSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCS--H--HHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchh--h--hhhhhccCCCE
Confidence 68999999999999999987554321 1122344444443332 34689999999976542110 0 22456799999
Q ss_pred EEEEEeCCCC
Q psy6249 82 VLMMLDATKQ 91 (119)
Q Consensus 82 il~Vvd~~~~ 91 (119)
+++|+|+++.
T Consensus 76 ~IlV~Ditd~ 85 (331)
T 3r7w_B 76 LVYVIDSQDE 85 (331)
T ss_dssp EEEECCCSSC
T ss_pred EEEEEECCch
Confidence 9999999986
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.39 E-value=5.1e-12 Score=98.94 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=60.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc------cC------C------CCCceeeeeeeEEEECC-------eeEEEEeCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE------AA------S------YEFTTLTCIPGVIEYKG-------ANIQLLDLP 56 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~------~~------~------~~~~t~~~~~~~~~~~~-------~~~~~~Dtp 56 (119)
.+|+++|..|+|||||+++|...... +. . ..+.|.......+.+++ ..+.+||||
T Consensus 11 ~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTP 90 (704)
T 2rdo_7 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTP 90 (704)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCC
Confidence 58999999999999999999643210 00 0 12345545555566666 889999999
Q ss_pred cccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 57 GIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 57 G~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
|..+. ...+.+.++.+|++|+|+|+++.
T Consensus 91 G~~df-------~~~~~~~l~~aD~aIlVvDa~~g 118 (704)
T 2rdo_7 91 GHVDF-------TIEVERSMRVLDGAVMVYCAVGG 118 (704)
T ss_pred Cccch-------HHHHHHHHHHCCEEEEEEeCCCC
Confidence 97543 34456678899999999999976
No 184
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.37 E-value=3.3e-12 Score=98.37 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=54.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC---------------CCCCceeeeeeeEEEEC-----CeeEEEEeCCccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA---------------SYEFTTLTCIPGVIEYK-----GANIQLLDLPGIIEG 61 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~---------------~~~~~t~~~~~~~~~~~-----~~~~~~~DtpG~~~~ 61 (119)
.+|+++|..++|||||+++|+.....+. ...+.|.......+.+. ...+++|||||+.+.
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 4799999999999999999975221110 01233444444445453 257889999997653
Q ss_pred ccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 62 AAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
...+.+.++.||++++|+|+++.
T Consensus 87 -------~~ev~r~l~~aD~aILVVDa~~g 109 (600)
T 2ywe_A 87 -------SYEVSRALAACEGALLLIDASQG 109 (600)
T ss_dssp -------HHHHHHHHHTCSEEEEEEETTTB
T ss_pred -------HHHHHHHHHhCCEEEEEEECCCC
Confidence 34556678899999999999986
No 185
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.37 E-value=4.9e-12 Score=99.57 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
++|+++|.+|+|||||+|+|++...
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCc
Confidence 6899999999999999999998765
No 186
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.36 E-value=4.7e-12 Score=97.35 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=46.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE-------CCeeEEEEeCCcccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY-------KGANIQLLDLPGIIEGA 62 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~~~DtpG~~~~~ 62 (119)
..|+++|.||||||||+|+|++..... ..+++|..++.+...+ .+..+.++||||+....
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 468999999999999999999876433 4555565666666543 46789999999997653
No 187
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.35 E-value=1.3e-13 Score=106.11 Aligned_cols=83 Identities=22% Similarity=0.200 Sum_probs=39.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCccc-------------------------------CCCCCceeeeeeeEEEECCeeE
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEA-------------------------------ASYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 50 (119)
++|+++|.+|+|||||+|+|++....+ ...++.|+......+..++..+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i 257 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIY 257 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEE
Confidence 479999999999999999996321100 0124556666666677778899
Q ss_pred EEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 51 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.+|||||+.+..... ...+..+|++|+|+|+++.
T Consensus 258 ~iiDTPGh~~f~~~~-------~~~~~~aD~alLVVDa~~g 291 (592)
T 3mca_A 258 EIGDAPGHRDFISGM-------IAGASSADFAVLVVDSSQN 291 (592)
T ss_dssp -CCEEESSSEEEEEC-------CC-------CCSEEEEEEC
T ss_pred EEEECCChHHHHHHH-------HHHHhhCCEEEEEEECCCC
Confidence 999999986543322 2355789999999999863
No 188
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.35 E-value=2.7e-12 Score=98.85 Aligned_cols=83 Identities=18% Similarity=0.122 Sum_probs=53.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEE------------------CCeeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEY------------------KGANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~~~~~DtpG~~~~~~ 63 (119)
++|+++|.+|+|||||+++|++.........+.|.......+.+ ....+++|||||..+...
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~ 85 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT 85 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHH
Confidence 68999999999999999999865321111112221111111111 112589999999866544
Q ss_pred ccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 64 QGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 64 ~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
... +.++.+|++++|+|+++.
T Consensus 86 ~~~-------r~~~~aD~aILVvDa~~G 106 (594)
T 1g7s_A 86 LRK-------RGGALADLAILIVDINEG 106 (594)
T ss_dssp SBC-------SSSBSCSEEEEEEETTTC
T ss_pred HHH-------HHHhhCCEEEEEEECCCC
Confidence 331 356889999999999985
No 189
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.34 E-value=3e-12 Score=101.89 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=58.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC----------------CCCCceeeeeeeEEEEC----------------Cee
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA----------------SYEFTTLTCIPGVIEYK----------------GAN 49 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~----------------~~~ 49 (119)
.+|+++|.+|+|||||+++|++....+. ...+.|+......+.+. +..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 4799999999999999999985421110 01233444444444443 578
Q ss_pred EEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 50 IQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 50 ~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+++|||||..+.. ..+.++++.+|++|+|+|+++.
T Consensus 100 i~liDTPG~~df~-------~~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 100 INLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp EEEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETTTB
T ss_pred EEEEECcCchhhH-------HHHHHHHHhCCEEEEEEeCCCC
Confidence 9999999976643 3456678999999999999986
No 190
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.31 E-value=6.9e-12 Score=96.66 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=51.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccC---------------CCCCceeeeeeeEEEEC-----CeeEEEEeCCccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAA---------------SYEFTTLTCIPGVIEYK-----GANIQLLDLPGIIEG 61 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~---------------~~~~~t~~~~~~~~~~~-----~~~~~~~DtpG~~~~ 61 (119)
.+|+++|.+++|||||+++|+.....+. ...+.|.......+.+. +..+++|||||+.+.
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 4799999999999999999975322111 01233444444445553 267899999997543
Q ss_pred ccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 62 AAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
...+.+.++.+|++++|+|+++.
T Consensus 85 -------~~ev~~~l~~aD~aILVVDa~~g 107 (599)
T 3cb4_D 85 -------SYEVSRSLAACEGALLVVDAGQG 107 (599)
T ss_dssp -------HHHHHHHHHHCSEEEEEEETTTC
T ss_pred -------HHHHHHHHHHCCEEEEEEECCCC
Confidence 34556678899999999999885
No 191
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.31 E-value=1.5e-11 Score=89.60 Aligned_cols=60 Identities=27% Similarity=0.295 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCC-C------Cceeeeeee--EEEECCe--eEEEEeCCccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASY-E------FTTLTCIPG--VIEYKGA--NIQLLDLPGIIEG 61 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~-~------~~t~~~~~~--~~~~~~~--~~~~~DtpG~~~~ 61 (119)
++|+++|.+|+|||||+|+|.+.......+ + .+|...... .+...+. .+++|||||+.+.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 579999999999999999998664422221 0 122222211 1223343 6899999998543
No 192
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.31 E-value=2e-11 Score=93.28 Aligned_cols=99 Identities=19% Similarity=0.188 Sum_probs=71.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcc----------------cC------CCCCceeeeeeeEEEECCeeEEEEeCCcccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSE----------------AA------SYEFTTLTCIPGVIEYKGANIQLLDLPGIIE 60 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~----------------~~------~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~ 60 (119)
.|+|+|..++|||||.-+|...... +. ...+-|+......+.|++..++++||||..+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 6999999999999999998522111 11 1234455556667889999999999999877
Q ss_pred cccccchHHHHHHHHhcCCCEEEEEEeCCCC-chhHHHHHHHHHHcCCc
Q psy6249 61 GAAQGKGRGRQVIAVARTADLVLMMLDATKQ-DVQRGLLEKELESVGIR 108 (119)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~~~~ 108 (119)
+. .+..+.++-+|++|+|+||... ..+-..+++.+..++.+
T Consensus 113 F~-------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp 154 (548)
T 3vqt_A 113 FS-------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATP 154 (548)
T ss_dssp CS-------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC
T ss_pred HH-------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCc
Confidence 64 4566788999999999999986 44666677777666654
No 193
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.30 E-value=3.5e-11 Score=93.72 Aligned_cols=97 Identities=20% Similarity=0.158 Sum_probs=66.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc------c------CC------CCCceeeeeeeEEEECCeeEEEEeCCccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE------A------AS------YEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAA 63 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~------~------~~------~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 63 (119)
.+|+++|.+|+|||||+++|++.... + .. ..+.|...+...+.+.+..+++|||||..+.
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f-- 87 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF-- 87 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG--
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch--
Confidence 37999999999999999999843221 1 00 1133444555566677889999999996542
Q ss_pred ccchHHHHHHHHhcCCCEEEEEEeCCCCc-hhHHHHHHHHHHc
Q psy6249 64 QGKGRGRQVIAVARTADLVLMMLDATKQD-VQRGLLEKELESV 105 (119)
Q Consensus 64 ~~~~~~~~~~~~~~~~d~il~Vvd~~~~~-~~~~~~~~~l~~~ 105 (119)
...+.++++.+|++++|+|+++.. .+...+...+...
T Consensus 88 -----~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~ 125 (665)
T 2dy1_A 88 -----VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL 125 (665)
T ss_dssp -----HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc
Confidence 345667888999999999998752 3334444444443
No 194
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.29 E-value=1.7e-11 Score=99.87 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=56.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc-----------c-----CCCCCceeeeeeeEEEECCeeEEEEeCCccccccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE-----------A-----ASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~-----------~-----~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 65 (119)
++|+++|.+++|||||+++|++.... . ....+.|.......+...+..+.+|||||..+
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed----- 371 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD----- 371 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH-----
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH-----
Confidence 57999999999999999999863110 0 01123333333333455678999999999643
Q ss_pred chHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 66 KGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 66 ~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
+.......+..+|++|+|+|+++.
T Consensus 372 --F~~~mi~gas~AD~aILVVDAtdG 395 (1289)
T 3avx_A 372 --YVKNMITGAAQMDGAILVVAATDG 395 (1289)
T ss_dssp --HHHHHHHTSCCCSEEEEEEETTTC
T ss_pred --HHHHHHHHHhhCCEEEEEEcCCcc
Confidence 334556678999999999999985
No 195
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.23 E-value=6.7e-12 Score=87.89 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=38.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCCceeeeeeeEEEECCeeEEEEeCCcccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGA 62 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~ 62 (119)
.+++++|.||+|||||+|+|++... .+++.+++|...+ .+.. +..+.+|||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL-ENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC-TTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe-CCCEEEEECCCcccCc
Confidence 4899999999999999999998765 5666777776543 2322 4578999999997654
No 196
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.22 E-value=2.3e-12 Score=89.56 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=21.5
Q ss_pred ceEEEEcCC---------CCCHHHHHHHHhCC
Q psy6249 2 FTLRVLDLK---------CSHESTLLSTLTHT 24 (119)
Q Consensus 2 ~~v~iiG~~---------~~GKStlin~l~~~ 24 (119)
++|+++|.+ |||||||+|++++.
T Consensus 20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp EEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred eEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 589999999 99999999999974
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.21 E-value=3.7e-12 Score=92.44 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|+++|+||||||||+|+|++
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999985
No 198
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.12 E-value=4.7e-11 Score=92.62 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=71.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcc------cC------CC------CCceeeeeeeEEEECCeeEEEEeCCcccccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSE------AA------SY------EFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQ 64 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~------~~------~~------~~~t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 64 (119)
.|+|+|...+|||||..+|...... +. .+ .+-|+......+.+++..++++||||..++
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF--- 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF--- 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST---
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH---
Confidence 5899999999999999998521111 11 00 134455555567788999999999997765
Q ss_pred cchHHHHHHHHhcCCCEEEEEEeCCCC-chhHHHHHHHHHHcCCc
Q psy6249 65 GKGRGRQVIAVARTADLVLMMLDATKQ-DVQRGLLEKELESVGIR 108 (119)
Q Consensus 65 ~~~~~~~~~~~~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~~~~ 108 (119)
..+..+.++.+|++|+|+||... ..+-..+...+..++.+
T Consensus 81 ----~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp 121 (638)
T 3j25_A 81 ----LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 121 (638)
T ss_dssp ----HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCS
T ss_pred ----HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC
Confidence 45667888999999999999976 34556666666665543
No 199
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.02 E-value=5e-10 Score=81.24 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=26.2
Q ss_pred CCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCC
Q psy6249 46 KGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATK 90 (119)
Q Consensus 46 ~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~ 90 (119)
.+..+.+|||||+.. .....+..+|++++|+|+..
T Consensus 170 ~~~~~iiiDTpGi~~----------~~~~~~~~aD~vl~V~d~~~ 204 (355)
T 3p32_A 170 AGFDVILIETVGVGQ----------SEVAVANMVDTFVLLTLART 204 (355)
T ss_dssp TTCCEEEEEECSCSS----------HHHHHHTTCSEEEEEEESST
T ss_pred CCCCEEEEeCCCCCc----------HHHHHHHhCCEEEEEECCCC
Confidence 467899999999633 11223588999999999864
No 200
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.01 E-value=5.8e-10 Score=80.54 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=25.4
Q ss_pred CCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 46 KGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 46 ~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
.+..+.++||||+.... . .....+|++++|+|++..
T Consensus 147 ~~~~i~liDTpG~~~~~-------~---~~~~~aD~vl~Vvd~~~~ 182 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSE-------T---EVARMVDCFISLQIAGGG 182 (341)
T ss_dssp TTCSEEEEEEECCTTHH-------H---HHHTTCSEEEEEECC---
T ss_pred cCCCEEEEeCCCccchH-------H---HHHHhCCEEEEEEeCCcc
Confidence 46789999999975421 1 134899999999999753
No 201
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=99.00 E-value=1.4e-09 Score=81.31 Aligned_cols=95 Identities=12% Similarity=0.087 Sum_probs=56.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC---------------CcccCCCCCceeeeeeeEEEEC-----------CeeEEEEeCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT---------------QSEAASYEFTTLTCIPGVIEYK-----------GANIQLLDLP 56 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~---------------~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~~Dtp 56 (119)
-|+|+|++++|||||+|.|.+. +...-...+++..++.|...+. ...+.++|||
T Consensus 69 vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTe 148 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQ 148 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcCC
Confidence 3889999999999999999863 1222223335666777776653 2568999999
Q ss_pred cccccccccchHHHH-HHHHhcCCCEEEEEEeCCCCchhHHHH
Q psy6249 57 GIIEGAAQGKGRGRQ-VIAVARTADLVLMMLDATKQDVQRGLL 98 (119)
Q Consensus 57 G~~~~~~~~~~~~~~-~~~~~~~~d~il~Vvd~~~~~~~~~~~ 98 (119)
|+.+.... .+.... +.-.+--++.+||=+...-...+++.+
T Consensus 149 G~~~~~~~-~~~d~~ifal~~lLSs~~IyN~~~~i~~~~l~~L 190 (447)
T 3q5d_A 149 GTFDSQST-LRDSATVFALSTMISSIQVYNLSQNVQEDDLQHL 190 (447)
T ss_dssp CCCSSHHH-HHHHHHHHHHHHHHCSEEEEEESSSCCHHHHHHH
T ss_pred cccccccc-hhhhHHHHHHHHHHhhHHHHhhcccccHHHHHHH
Confidence 98654321 111111 111222366777766555444444443
No 202
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.99 E-value=5.1e-09 Score=82.07 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=64.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc------ccC------------CCCCceeeeeeeEEEEC-------CeeEEEEeCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS------EAA------------SYEFTTLTCIPGVIEYK-------GANIQLLDLPG 57 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~------~~~------------~~~~~t~~~~~~~~~~~-------~~~~~~~DtpG 57 (119)
.|+|+|...+|||||.-+|..... .+. ...+-|+......+.|. +..++++||||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG 94 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG 94 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence 699999999999999998852211 010 01233444444445553 46899999999
Q ss_pred ccccccccchHHHHHHHHhcCCCEEEEEEeCCCC-chhHHHHHHHHHHcCC
Q psy6249 58 IIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ-DVQRGLLEKELESVGI 107 (119)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~-~~~~~~~~~~l~~~~~ 107 (119)
..++ ..+..+.++-||++|+|+|+... ..+-+.+.......+.
T Consensus 95 HvDF-------~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~l 138 (709)
T 4fn5_A 95 HVDF-------TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGV 138 (709)
T ss_dssp CTTC-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTC
T ss_pred Cccc-------HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCC
Confidence 8775 44667788999999999999976 3455555555555443
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.91 E-value=1.1e-08 Score=75.90 Aligned_cols=60 Identities=28% Similarity=0.345 Sum_probs=32.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCCCC------Cceeee-eeeE-EEECC--eeEEEEeCCccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAASYE------FTTLTC-IPGV-IEYKG--ANIQLLDLPGIIEG 61 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~~~------~~t~~~-~~~~-~~~~~--~~~~~~DtpG~~~~ 61 (119)
++|+++|++|||||||+|.|++......... ..|... ..+. +...+ ..+++||+||+...
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 5799999999999999999998764211111 111111 1111 11122 36899999998653
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.90 E-value=3e-09 Score=76.80 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++++|+||||||||+|.|.+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999973
No 205
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.87 E-value=5.1e-09 Score=79.31 Aligned_cols=92 Identities=13% Similarity=0.128 Sum_probs=53.7
Q ss_pred eEEEEcCCCCCHHHHHHHHh------CCCcc-cCC--CCCcee--------eeeeeEE-------------------EEC
Q psy6249 3 TLRVLDLKCSHESTLLSTLT------HTQSE-AAS--YEFTTL--------TCIPGVI-------------------EYK 46 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~------~~~~~-~~~--~~~~t~--------~~~~~~~-------------------~~~ 46 (119)
.|+++|++||||||+++.|. +.+.. ++. +..... ......+ ...
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~~ 182 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNE 182 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999998 55431 111 100000 0000001 115
Q ss_pred CeeEEEEeCCcccccccccchHHHHHHH--HhcCCCEEEEEEeCCCCchhHHH
Q psy6249 47 GANIQLLDLPGIIEGAAQGKGRGRQVIA--VARTADLVLMMLDATKQDVQRGL 97 (119)
Q Consensus 47 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~--~~~~~d~il~Vvd~~~~~~~~~~ 97 (119)
+..+.+|||||...... .+...... ....+|.+++|+|++.....++.
T Consensus 183 ~~DvvIIDTpG~~~~~~---~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~ 232 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQED---SLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ 232 (504)
T ss_dssp TCCEEEEEECCCCTTCH---HHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH
T ss_pred CCcEEEEeCCCCcccch---hHHHHHHHHHhhhcCceEEEEEeccccccHHHH
Confidence 67899999999764311 11222111 12379999999999876444333
No 206
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.85 E-value=2.9e-08 Score=73.77 Aligned_cols=59 Identities=19% Similarity=0.128 Sum_probs=37.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcc---cCC-CCCceeeeeeeEEEEC-C--eeEEEEeCCccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSE---AAS-YEFTTLTCIPGVIEYK-G--ANIQLLDLPGIIEG 61 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~---~~~-~~~~t~~~~~~~~~~~-~--~~~~~~DtpG~~~~ 61 (119)
++++++|++|||||||+|.|.|.... ... .+..+.. ..+.+... + ..++++|+||+...
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCccccccchhhhhhhhhc
Confidence 35899999999999999999987531 111 1222322 23333222 2 26899999998653
No 207
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.82 E-value=6.6e-09 Score=73.88 Aligned_cols=58 Identities=26% Similarity=0.239 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCc-ccCCCC------Cceeee-eeeEE-EEC--CeeEEEEeCCccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQS-EAASYE------FTTLTC-IPGVI-EYK--GANIQLLDLPGII 59 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~-~~~~~~------~~t~~~-~~~~~-~~~--~~~~~~~DtpG~~ 59 (119)
++|+++|++|||||||+|+|.+... ..+..+ ..|... ..+.. +.. ...+++|||||+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 6899999999999999999987522 221110 011111 11111 111 3578999999984
No 208
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.76 E-value=1.1e-07 Score=68.76 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=35.3
Q ss_pred eeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCC
Q psy6249 36 LTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDAT 89 (119)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~ 89 (119)
.+.....+.+++..+.+|||+|. +..+..+..++++++++|+|+|.+
T Consensus 149 iGi~~~~~~~~~v~l~iwDtaGQ-------e~~R~~w~~yy~~a~~iIfV~diS 195 (340)
T 4fid_A 149 TGIHEYDFVVKDIPFHLIDVGGQ-------RSERKXWVSFFSDVDCAIFVTSLA 195 (340)
T ss_dssp CSCEEEEEESSSCEEEEEECCSC-------HHHHHHHHTTSCSCSEEEEEEEGG
T ss_pred eeeEEEEEEeeeeeeccccCCCc-------ccccccHHHHhccCCEEEEEEECC
Confidence 33344456667889999999994 233445667889999999999998
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.67 E-value=2.9e-07 Score=68.17 Aligned_cols=94 Identities=18% Similarity=0.149 Sum_probs=51.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccC-C----CCCceeeeeeeEEEECC--eeEEEEeCCcccccccccchHHHHHHHH
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAA-S----YEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAV 75 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~-~----~~~~t~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~ 75 (119)
.++++|++|||||||+|.|.|...... . ...+|. .+.+.... .+++++|+||+..... ....++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~---~~~v~q~~~~~~ltv~D~~g~~~~~~----~~~~~L~~ 143 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM---ERHPYKHPNIPNVVFWDLPGIGSTNF----PPDTYLEK 143 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C---CCEEEECSSCTTEEEEECCCGGGSSC----CHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce---eEEeccccccCCeeehHhhcccchHH----HHHHHHHH
Confidence 689999999999999999998543211 1 111111 13332222 3689999999864211 12333332
Q ss_pred --hcCCCEEEEEEeCCCCchhHHHHHHHHHH
Q psy6249 76 --ARTADLVLMMLDATKQDVQRGLLEKELES 104 (119)
Q Consensus 76 --~~~~d~il~Vvd~~~~~~~~~~~~~~l~~ 104 (119)
+...+..++ ++.....++.-.+...+..
T Consensus 144 ~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 144 MKFYEYDFFII-ISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp TTGGGCSEEEE-EESSCCCHHHHHHHHHHHH
T ss_pred cCCCccCCeEE-eCCCCccHHHHHHHHHHHh
Confidence 344566665 7776333333334444433
No 210
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.66 E-value=8.8e-09 Score=72.27 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=34.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCCcccCC--------CCCceeeeeeeEEEEC---CeeEEEEeCCccccc
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQSEAAS--------YEFTTLTCIPGVIEYK---GANIQLLDLPGIIEG 61 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~~~~~~--------~~~~t~~~~~~~~~~~---~~~~~~~DtpG~~~~ 61 (119)
++++++|++|||||||+|.|++.....+. .+.+......+.+... ...++++|+||+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence 68999999999999999999875432111 1111111122222111 237899999998653
No 211
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.63 E-value=1.1e-07 Score=65.46 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=27.8
Q ss_pred eeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 48 ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 48 ~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
..+.+|||||..+.... ..+......++.. +++++|+|++..
T Consensus 109 ~d~iiiDtpG~~~~~~~-~~l~~~~~~~~~~-~~iv~vvD~~~~ 150 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLF-HEFGVRLMENLPY-PLVVYISDPEIL 150 (262)
T ss_dssp CSEEEEECCSSHHHHHH-SHHHHHHHHTSSS-CEEEEEECGGGC
T ss_pred CCEEEEeCCCccchhhh-hhhHHHHHHHHhh-ceEEeccchhhh
Confidence 47899999997653221 1123334455666 999999998754
No 212
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.58 E-value=2.4e-08 Score=67.05 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~ 24 (119)
+.|+++|.+|||||||+|+|.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999854
No 213
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.56 E-value=8.4e-07 Score=63.88 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=33.4
Q ss_pred eeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCC
Q psy6249 37 TCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDAT 89 (119)
Q Consensus 37 ~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~ 89 (119)
+.....+..++..+.+|||+|....+ ..+..++++++++++|+|.+
T Consensus 156 Gi~~~~~~~~~v~l~iwDtgGQe~~R-------~~w~~yf~~~~~iIfV~dls 201 (327)
T 3ohm_A 156 GIIEYPFDLQSVIFRMVDVGGQRSER-------RKWIHCFENVTSIMFLVALS 201 (327)
T ss_dssp SEEEEEEEETTEEEEEEEECCSHHHH-------TTGGGGCSSCSEEEEEEEGG
T ss_pred eEEEEEEEeeceeeEEEEcCCchhHH-------HHHHHHhCCCCEEEEEEECc
Confidence 33444566678899999999954332 23456889999999999776
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.42 E-value=1.9e-07 Score=69.48 Aligned_cols=87 Identities=18% Similarity=0.295 Sum_probs=50.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC------Ccc-cCC--C--------------------CC--ceeeee----eeEEEECC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT------QSE-AAS--Y--------------------EF--TTLTCI----PGVIEYKG 47 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~------~~~-~~~--~--------------------~~--~t~~~~----~~~~~~~~ 47 (119)
.|+++|++||||||+.+.|... +.. ++. + +. ++.++. .+.-...+
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~~ 180 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKK 180 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhhC
Confidence 5899999999999999999752 221 000 0 00 111110 00001146
Q ss_pred eeEEEEeCCcccccccccchHHHHHH--HHhcCCCEEEEEEeCCCCc
Q psy6249 48 ANIQLLDLPGIIEGAAQGKGRGRQVI--AVARTADLVLMMLDATKQD 92 (119)
Q Consensus 48 ~~~~~~DtpG~~~~~~~~~~~~~~~~--~~~~~~d~il~Vvd~~~~~ 92 (119)
..+.++||||.... ...+..... ..+..+|.+++|+|++...
T Consensus 181 ~D~vIIDT~G~~~~---~~~l~~~l~~i~~~~~~d~vllVvda~~g~ 224 (432)
T 2v3c_C 181 ADVLIIDTAGRHKE---EKGLLEEMKQIKEITNPDEIILVIDGTIGQ 224 (432)
T ss_dssp CSEEEEECCCSCSS---HHHHHHHHHHTTSSSCCSEEEEEEEGGGGG
T ss_pred CCEEEEcCCCCccc---cHHHHHHHHHHHHHhcCcceeEEeeccccH
Confidence 78999999997642 111122221 1234689999999998754
No 215
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.40 E-value=1.6e-07 Score=68.34 Aligned_cols=56 Identities=20% Similarity=0.056 Sum_probs=34.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-c-cCCCC---C----ceeeeeeeEEEECCeeEEEEeCCccccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS-E-AASYE---F----TTLTCIPGVIEYKGANIQLLDLPGIIEG 61 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~-~-~~~~~---~----~t~~~~~~~~~~~~~~~~~~DtpG~~~~ 61 (119)
.++++|++|||||||+|.|.+... . .+... + +|.....+.+. ....++|+||+.+.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~---q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP---HGGDVIDSPGVREF 281 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT---TSCEEEECHHHHTC
T ss_pred EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC---CCCEecCcccHHHh
Confidence 589999999999999999997653 2 22111 1 22222222221 22367999998553
No 216
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.36 E-value=1.4e-07 Score=67.33 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=31.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-ccCCCC-------CceeeeeeeEEEECCeeEEEEeCCcccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS-EAASYE-------FTTLTCIPGVIEYKGANIQLLDLPGIIE 60 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~-~~~~~~-------~~t~~~~~~~~~~~~~~~~~~DtpG~~~ 60 (119)
.++++|++|||||||+|.|.+... .++... ++|... ..+... .-.++|+||+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~--~~~~~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV--ELIHTS--GGLVADTPGFSS 236 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-------------------CCCC--CEEEET--TEEEESSCSCSS
T ss_pred EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH--HHhhcC--CEEEecCCCccc
Confidence 689999999999999999987543 222221 233222 122222 347899999865
No 217
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.34 E-value=9.5e-07 Score=68.23 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~ 25 (119)
+.++++|++|||||||++.|.|..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 469999999999999999999874
No 218
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.32 E-value=7.1e-07 Score=63.38 Aligned_cols=53 Identities=21% Similarity=0.175 Sum_probs=32.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-ccCCCCC-------ceeeeeeeEEEECCeeEEEEeCCccc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS-EAASYEF-------TTLTCIPGVIEYKGANIQLLDLPGII 59 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~-~~~~~~~-------~t~~~~~~~~~~~~~~~~~~DtpG~~ 59 (119)
.++++|++|||||||+|.|. ... ..+.... +|... ..+... ..-.++|+||+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~--~~~~~~-~~g~v~d~pg~~ 227 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV--RLIPFG-KGSFVGDTPGFS 227 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE--EEEEET-TTEEEESSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE--EEEEcC-CCcEEEECcCcC
Confidence 57999999999999999998 543 2222221 22222 122221 234689999975
No 219
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.28 E-value=3e-06 Score=63.27 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=29.5
Q ss_pred CeeEEEEeCCcccccccccchHHHH--HHHHhcCCCEEEEEEeCCCCchhHH
Q psy6249 47 GANIQLLDLPGIIEGAAQGKGRGRQ--VIAVARTADLVLMMLDATKQDVQRG 96 (119)
Q Consensus 47 ~~~~~~~DtpG~~~~~~~~~~~~~~--~~~~~~~~d~il~Vvd~~~~~~~~~ 96 (119)
+..+.++||||...... ....+ .+.....+|.+++|+|++......+
T Consensus 182 ~~DvVIIDTaGrl~~d~---~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~ 230 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDK---ALIEEMKQISNVIHPHEVILVIDGTIGQQAYN 230 (443)
T ss_dssp TCSEEEEECCCCSSCCH---HHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH
T ss_pred CCCEEEEECCCcccchH---HHHHHHHHHHHhhcCceEEEEEeCCCchhHHH
Confidence 47899999999654221 11222 1223456899999999987544333
No 220
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.24 E-value=8e-07 Score=63.04 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||+|.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999997654
No 221
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.23 E-value=1.2e-06 Score=60.12 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999765
No 222
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.21 E-value=3.4e-07 Score=61.56 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=33.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc--ccCCCCCceeeeeeeEEEECCeeEEEEeCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS--EAASYEFTTLTCIPGVIEYKGANIQLLDLP 56 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~Dtp 56 (119)
.|+|+|++|||||||++.|.+... -....+.+|+.+..+. .+|..+.++|..
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~ 74 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTE 74 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHH
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHH
Confidence 589999999999999999986543 1223344565565554 344444444443
No 223
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.19 E-value=1.5e-06 Score=59.20 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999764
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.19 E-value=4.2e-06 Score=62.31 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
.|+++|++||||||+++.|.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999886
No 225
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.18 E-value=3.2e-06 Score=63.91 Aligned_cols=21 Identities=10% Similarity=0.235 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++|+|++|||||||++.|.+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHH
Confidence 589999999999999999964
No 226
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.17 E-value=1.9e-06 Score=59.37 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 227
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.17 E-value=1.9e-06 Score=60.57 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 228
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.16 E-value=2e-06 Score=59.94 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 229
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.15 E-value=5.7e-06 Score=59.53 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
-++++|++||||||+++.|.+.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 230
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.15 E-value=2.1e-06 Score=59.67 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 231
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.14 E-value=1.2e-06 Score=57.77 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~~ 25 (119)
++++++|++|||||||++.|.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998643
No 232
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.14 E-value=2.4e-06 Score=58.80 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 233
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.13 E-value=1.8e-05 Score=56.30 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++++|++||||||+++.|.+
T Consensus 104 vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999974
No 234
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.12 E-value=2.4e-06 Score=59.65 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999999764
No 235
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.11 E-value=2e-06 Score=60.17 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999865
No 236
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.11 E-value=2.7e-06 Score=58.78 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999865
No 237
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.10 E-value=3.8e-06 Score=57.00 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 238
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.10 E-value=4.7e-06 Score=57.23 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999865
No 239
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.09 E-value=4.9e-06 Score=57.54 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=27.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCe
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGA 48 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~ 48 (119)
.++++|++|||||||++.|.|... ..+..|.+.++|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~ 67 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGDPE---------YTVERGEILLDGE 67 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---------CCCCceEEEECCE
Confidence 478999999999999999998510 1345566666654
No 240
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.08 E-value=3.5e-06 Score=59.32 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999864
No 241
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.08 E-value=4.3e-06 Score=58.17 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 242
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.07 E-value=3.6e-06 Score=58.96 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999865
No 243
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.07 E-value=3.9e-06 Score=58.58 Aligned_cols=23 Identities=30% Similarity=0.159 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999764
No 244
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.07 E-value=2.6e-06 Score=58.67 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999997653
No 245
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.05 E-value=5.5e-06 Score=57.38 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999864
No 246
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.05 E-value=8.9e-06 Score=55.55 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 247
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.03 E-value=2.7e-06 Score=60.65 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 68999999999999999999764
No 248
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.02 E-value=9.2e-06 Score=57.92 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++++|++||||||++..|.+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHH
Confidence 588999999999999998863
No 249
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.02 E-value=6.4e-06 Score=59.97 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=27.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 50 (119)
.++++|++|||||||++.|.|... +..|.+.++|..+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~-----------p~~G~I~i~G~~i 68 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ-----------PDSGEISLSGKTI 68 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC-----------CSEEEEEETTEEE
T ss_pred EEEEECCCCchHHHHHHHHhcCCC-----------CCCcEEEECCEEC
Confidence 478999999999999999998653 3345665555443
No 250
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.02 E-value=5.6e-06 Score=60.45 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47999999999999999999865
No 251
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.00 E-value=7.9e-06 Score=57.08 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|||||||++.|.|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 252
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.99 E-value=9.1e-06 Score=59.43 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=28.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 50 (119)
.++++|++|||||||++.|.|... +..|.+.++|..+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~-----------p~~G~I~i~g~~~ 67 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE-----------PSRGQIYIGDKLV 67 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC-----------CSEEEEEETTEEE
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC-----------CCccEEEECCEEC
Confidence 478999999999999999998652 3456666666544
No 253
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.97 E-value=3.2e-06 Score=56.31 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++|+|++|||||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 254
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.95 E-value=3.8e-06 Score=56.16 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998654
No 255
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.95 E-value=8.5e-06 Score=59.25 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999865
No 256
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.95 E-value=8.7e-06 Score=59.26 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999999865
No 257
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.94 E-value=9.3e-06 Score=59.19 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999865
No 258
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.94 E-value=4.3e-05 Score=57.21 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=49.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhC-------CCcc------cCC--CCCceeeeeeeEEEE---------CC--eeEEEEeCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH-------TQSE------AAS--YEFTTLTCIPGVIEY---------KG--ANIQLLDLP 56 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~-------~~~~------~~~--~~~~t~~~~~~~~~~---------~~--~~~~~~Dtp 56 (119)
-|+++|++++|||+|+|.|.+ ..+. ... ..++...++.|...+ ++ ..+-++||.
T Consensus 69 vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTE 148 (457)
T 4ido_A 69 AVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQ 148 (457)
T ss_dssp EEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEEC
T ss_pred EEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEecc
Confidence 378999999999999996642 1000 000 111122234444332 22 468899999
Q ss_pred cccccccccchHHHH-HHHHhcCCCEEEEEEeCCCCchhHHHH
Q psy6249 57 GIIEGAAQGKGRGRQ-VIAVARTADLVLMMLDATKQDVQRGLL 98 (119)
Q Consensus 57 G~~~~~~~~~~~~~~-~~~~~~~~d~il~Vvd~~~~~~~~~~~ 98 (119)
|+.+..... +.... +.-.+--++.+||=....-...+++.+
T Consensus 149 G~~d~~~~~-~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~~L 190 (457)
T 4ido_A 149 GTFDSQSTL-RDSATVFALSTMISSIQVYNLSQNVQEDDLQHL 190 (457)
T ss_dssp CBTCTTCCH-HHHHHHHHHHHHHCSEEEEEEESSCCHHHHHHH
T ss_pred CCCCcccCc-cccHHHHHHHHHHhhheeecccccCCHHHHHHH
Confidence 986543321 11111 211223356666665555443444433
No 259
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.94 E-value=2.5e-05 Score=55.38 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=30.5
Q ss_pred CCeeEEEEeCCcccccccccchHHHH--HHHHhcCCCEEEEEEeCCCCchhHHHH
Q psy6249 46 KGANIQLLDLPGIIEGAAQGKGRGRQ--VIAVARTADLVLMMLDATKQDVQRGLL 98 (119)
Q Consensus 46 ~~~~~~~~DtpG~~~~~~~~~~~~~~--~~~~~~~~d~il~Vvd~~~~~~~~~~~ 98 (119)
.+..+.++||||...... ...+..+ .......+|.+++|+|+....+.++.+
T Consensus 179 ~~~D~ViIDTpg~~~~~~-~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~ 232 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGE-EAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLA 232 (297)
T ss_dssp TTCSEEEEECCCSCCTTC-HHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH
T ss_pred CCCCEEEEeCCCCccccc-HHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHH
Confidence 456899999999765100 1111111 112345799999999998653343333
No 260
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.94 E-value=9.5e-06 Score=59.53 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999999865
No 261
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.93 E-value=4.5e-06 Score=54.69 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 262
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.92 E-value=6.7e-06 Score=59.71 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=27.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccCCCCCceeeeeeeEEEECCeeE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANI 50 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 50 (119)
.++++|++|||||||++.|.|... +..|.+.++|..+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~-----------p~~G~I~i~g~~i 69 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV-----------PSTGELYFDDRLV 69 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC-----------CSEEEEEETTEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC-----------CCceEEEECCEEC
Confidence 478999999999999999998652 3346666655443
No 263
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.91 E-value=1.1e-05 Score=59.00 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999999865
No 264
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.91 E-value=2.1e-06 Score=57.10 Aligned_cols=40 Identities=25% Similarity=0.134 Sum_probs=27.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcc--cCCCCCceeeeeeeE
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQSE--AASYEFTTLTCIPGV 42 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~~--~~~~~~~t~~~~~~~ 42 (119)
-|+|+|++|||||||++.|...... .-..+.||+.+..+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE 44 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC
Confidence 3789999999999999999754321 123345666555553
No 265
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.91 E-value=5.1e-06 Score=54.92 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 266
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.90 E-value=1.2e-05 Score=55.97 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999764
No 267
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.89 E-value=6.6e-06 Score=53.86 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++||||||+++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999864
No 268
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.89 E-value=1.4e-05 Score=56.60 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999999865
No 269
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.89 E-value=6.9e-06 Score=54.41 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHhC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~ 23 (119)
|+.|+++|.+||||||+.+.|.+
T Consensus 1 m~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHHH
Confidence 67899999999999999999976
No 270
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.88 E-value=3.1e-05 Score=56.18 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=37.4
Q ss_pred eeeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC
Q psy6249 35 TLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ 91 (119)
Q Consensus 35 t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~ 91 (119)
|.+.....+.+++..+.+|||+|.-..+.. +..++++++++|+|+|.++.
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~-------w~~yf~~a~~iIfV~dls~~ 229 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERKK-------WIHCFEGVTAIIFCVALSDY 229 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGG-------GGGGCTTCSEEEEEEEGGGG
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhHH-------HHHHHhcCCEEEEEEECccc
Confidence 334444556778899999999996544333 34578999999999999983
No 271
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.88 E-value=8.4e-06 Score=59.13 Aligned_cols=23 Identities=9% Similarity=0.119 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999865
No 272
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.88 E-value=6.1e-06 Score=54.25 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999998643
No 273
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.86 E-value=6.8e-06 Score=55.54 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++|+|++|||||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998644
No 274
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.84 E-value=7.7e-06 Score=55.57 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
-++++|++|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998754
No 275
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.84 E-value=6.9e-06 Score=54.91 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.|+|+|++|||||||++.|.+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 276
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.83 E-value=2.3e-06 Score=56.17 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~ 24 (119)
..++|+|++|||||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
No 277
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.83 E-value=3.6e-05 Score=56.05 Aligned_cols=48 Identities=10% Similarity=0.162 Sum_probs=33.1
Q ss_pred eeeeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCC
Q psy6249 36 LTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATK 90 (119)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~ 90 (119)
.+.....+.+++..+.+|||+|.-..+ ..+..++++++++|+|+|.++
T Consensus 189 ~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r-------~~w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 189 KGIHEYDFEIKNVPFKMVDVGGQRSER-------KRWFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp SSEEEEEEEETTEEEEEEEECC--------------CTTSCTTCCEEEEEEETTC
T ss_pred cceEEEEeeeCCeEEEEEeccchhhhh-------hhHHHHhCCCCEEEEEEECcc
Confidence 344444567788999999999964332 233457789999999999998
No 278
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.82 E-value=1.2e-05 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~ 23 (119)
|+.|+++|++||||||+.+.|..
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999963
No 279
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.82 E-value=1.1e-05 Score=52.53 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=17.4
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999543
No 280
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.80 E-value=4.2e-05 Score=56.91 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=29.6
Q ss_pred CCeeEEEEeCCcccccccccchHHHH--HHHHhcCCCEEEEEEeCCCCchhH
Q psy6249 46 KGANIQLLDLPGIIEGAAQGKGRGRQ--VIAVARTADLVLMMLDATKQDVQR 95 (119)
Q Consensus 46 ~~~~~~~~DtpG~~~~~~~~~~~~~~--~~~~~~~~d~il~Vvd~~~~~~~~ 95 (119)
.+..+.++||||...... ..... ....+..+|.+++|+|+......+
T Consensus 182 ~~~D~VIIDTpG~l~~~~---~l~~~L~~~~~~~~p~~vllVvda~~g~~~~ 230 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDE---AMMDEIKQVHASINPVETLFVVDAMTGQDAA 230 (433)
T ss_dssp TTCSEEEEECCCCCTTCH---HHHHHHHHHHHHSCCSEEEEEEETTBCTTHH
T ss_pred CCCCEEEEECCCcccccH---HHHHHHHHHHHhhcCcceeEEeecchhHHHH
Confidence 367899999999654211 11222 122355789999999998653333
No 281
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.80 E-value=8.9e-05 Score=53.07 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=18.0
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
.|+++|++|+||||++..|.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999998885
No 282
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.80 E-value=1.2e-05 Score=53.79 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~ 24 (119)
++|+++|.+|||||||+++|...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999854
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.78 E-value=1.2e-05 Score=52.07 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999998754
No 284
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.77 E-value=1.3e-05 Score=55.54 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999865
No 285
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.77 E-value=1.8e-05 Score=54.14 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHh---CCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT---HTQ 25 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~---~~~ 25 (119)
..|+++|++||||||+++.|. +..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 469999999999999999998 654
No 286
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.77 E-value=2.1e-05 Score=60.31 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999999765
No 287
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.76 E-value=1.6e-05 Score=51.74 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~ 23 (119)
|+.|++.|+|||||||+.+.|..
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999863
No 288
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.75 E-value=2.3e-05 Score=60.08 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.+...
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999997653
No 289
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.75 E-value=0.00015 Score=53.45 Aligned_cols=74 Identities=11% Similarity=0.146 Sum_probs=47.0
Q ss_pred eeeeEEEECCeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCC---------chhHHHHHHHHHHc-CC
Q psy6249 38 CIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQ---------DVQRGLLEKELESV-GI 107 (119)
Q Consensus 38 ~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~---------~~~~~~~~~~l~~~-~~ 107 (119)
.....+.+++..+.+|||+|....+.. +..++++++++|+|+|.++- ...++.+..+++.. ..
T Consensus 207 i~~~~~~~~~v~l~iwDtaGQe~~r~~-------w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 207 IFETKFQVDKVNFHMFDVGGQRDERRK-------WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp EEEEEEEETTEEEEEEEECCSGGGGGG-------GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eEEEEeecCCccceecccchhhhhhhh-------hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 333446677889999999996544333 34578999999999999971 23444444444332 22
Q ss_pred cccCCCCceee
Q psy6249 108 RLNKKKPNIYF 118 (119)
Q Consensus 108 ~~~~~~~~v~~ 118 (119)
+...+.+.+++
T Consensus 280 ~~~~~~piiLv 290 (402)
T 1azs_C 280 RWLRTISVILF 290 (402)
T ss_dssp TTCSSCCEEEE
T ss_pred ccCCCCeEEEE
Confidence 23345555554
No 290
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.73 E-value=1.5e-05 Score=53.03 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.|+++|++|||||||++.|.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 291
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.73 E-value=1.7e-05 Score=51.11 Aligned_cols=23 Identities=13% Similarity=0.067 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~ 24 (119)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999753
No 292
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.72 E-value=1.1e-05 Score=54.51 Aligned_cols=22 Identities=14% Similarity=-0.085 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|||||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999986
No 293
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.72 E-value=2.2e-05 Score=52.11 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 294
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.72 E-value=2e-05 Score=60.40 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999998765
No 295
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.72 E-value=2e-05 Score=54.94 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 296
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.71 E-value=1.7e-05 Score=51.99 Aligned_cols=21 Identities=14% Similarity=-0.031 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++++|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999974
No 297
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.71 E-value=1.6e-05 Score=52.83 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|||||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999864
No 298
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.70 E-value=1.8e-05 Score=56.43 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++|+|++|||||||++.|.+.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999999853
No 299
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.69 E-value=2.1e-05 Score=60.54 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.|..
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999864
No 300
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.69 E-value=2e-05 Score=52.77 Aligned_cols=23 Identities=4% Similarity=-0.038 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
-|+++|++||||||+++.|.+..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48999999999999999998654
No 301
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.69 E-value=1.9e-05 Score=52.18 Aligned_cols=23 Identities=4% Similarity=-0.039 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.|+++|++||||||+++.|.+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999998654
No 302
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.68 E-value=1.9e-05 Score=54.98 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|||||||++.|.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999764
No 303
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.68 E-value=2.4e-05 Score=60.21 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999999765
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.67 E-value=2.1e-05 Score=52.13 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+++|++||||||+++.|.+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 305
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.64 E-value=4.8e-05 Score=55.94 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 47999999999999999999764
No 306
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.64 E-value=2.9e-05 Score=52.07 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|+++|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 307
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.64 E-value=3.1e-05 Score=59.56 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999998764
No 308
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.63 E-value=3.1e-05 Score=51.23 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|+++|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999963
No 309
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.62 E-value=3.2e-05 Score=52.35 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
-++++|++|||||||++.|.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 310
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.61 E-value=2.7e-05 Score=55.57 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+|+|++|||||||++.|.+
T Consensus 92 ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHh
Confidence 589999999999999999975
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.61 E-value=1.8e-05 Score=53.56 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=15.0
Q ss_pred eEEEEcCCCCCHHHHHHHHh-CCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLT-HTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~-~~~ 25 (119)
.++++|++||||||+++.|. +..
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 58999999999999999999 653
No 312
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.60 E-value=4.2e-05 Score=48.77 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCCHHHHHHHH
Q psy6249 2 FTLRVLDLKCSHESTLLSTL 21 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l 21 (119)
+-|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999
No 313
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.60 E-value=4.6e-05 Score=50.03 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~ 24 (119)
..++++|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999753
No 314
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.59 E-value=2.9e-05 Score=51.91 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-++++|++|||||||++.|.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 315
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.59 E-value=3.6e-05 Score=49.69 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+++|++||||||+.+.|.+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 316
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.59 E-value=3.8e-05 Score=51.04 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.|+++|++||||||+.+.|...
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999743
No 317
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.58 E-value=5.1e-05 Score=48.85 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|++.|+|||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 318
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.58 E-value=2.8e-05 Score=56.25 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
+++|+|++|||||||++.|.+..
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998653
No 319
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.57 E-value=0.00024 Score=52.77 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCeeEEEEeCCcccccccccchHHHHH--HHHhcCCCEEEEEEeCCCCchhHH
Q psy6249 46 KGANIQLLDLPGIIEGAAQGKGRGRQV--IAVARTADLVLMMLDATKQDVQRG 96 (119)
Q Consensus 46 ~~~~~~~~DtpG~~~~~~~~~~~~~~~--~~~~~~~d~il~Vvd~~~~~~~~~ 96 (119)
.+..+.++||||..... .....+. ......+|.+++|+|+....+.++
T Consensus 179 ~~~DvVIIDTaG~l~~d---~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~ 228 (425)
T 2ffh_A 179 EARDLILVDTAGRLQID---EPLMGELARLKEVLGPDEVLLVLDAMTGQEALS 228 (425)
T ss_dssp TTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHH
T ss_pred CCCCEEEEcCCCccccc---HHHHHHHHHhhhccCCceEEEEEeccchHHHHH
Confidence 35678999999965431 1112221 122346899999999986533333
No 320
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.57 E-value=4.9e-05 Score=49.90 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|++.|.+||||||+.+.|..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 4689999999999999999974
No 321
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.57 E-value=4.4e-05 Score=49.38 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=19.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHh
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~ 22 (119)
|+.|+++|+|||||||+.+.|.
T Consensus 4 m~~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3479999999999999998885
No 322
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.56 E-value=3.7e-05 Score=50.93 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+++|++||||||+.+.|.+
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 323
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.55 E-value=3.8e-05 Score=52.56 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+++|++|||||||++.|.+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 324
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.54 E-value=5.5e-05 Score=50.45 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
|+|++.|+|||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
No 325
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=6.2e-05 Score=49.83 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
..|+++|++||||||+.+.|.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999986
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.51 E-value=6.3e-05 Score=50.19 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
|+|+|+|+|||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
No 327
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.51 E-value=3.2e-05 Score=64.43 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
+|+++|++|||||||++.|.+..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 79999999999999999998754
No 328
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.48 E-value=5.2e-05 Score=54.47 Aligned_cols=23 Identities=13% Similarity=0.067 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 329
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.47 E-value=5.2e-05 Score=55.06 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|||||||+++|.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999753
No 330
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.47 E-value=7.7e-05 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~ 24 (119)
..|+++|.+||||||+.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999875
No 331
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.47 E-value=6e-05 Score=54.71 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998754
No 332
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.46 E-value=8.1e-05 Score=50.18 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHh
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~ 22 (119)
++.|+|+|++||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999886
No 333
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.46 E-value=9e-05 Score=48.12 Aligned_cols=22 Identities=9% Similarity=-0.103 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 334
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.46 E-value=8.2e-05 Score=47.71 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=20.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~ 23 (119)
|+.|++.|.+||||||+.+.|..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 335
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.46 E-value=5.8e-05 Score=53.61 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++++|++||||||+++.|.+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 336
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.45 E-value=0.00011 Score=56.08 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999998654
No 337
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.45 E-value=9.2e-05 Score=50.99 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
..|+|+|++||||||+.+.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999998
No 338
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.44 E-value=5.8e-05 Score=53.51 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+|+|++|||||||++.|.+
T Consensus 82 iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 339
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.43 E-value=9.8e-05 Score=47.19 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
|.|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 340
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.43 E-value=8.9e-05 Score=48.15 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
.|+++|.+||||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
No 341
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.43 E-value=7.3e-05 Score=57.04 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
-++++|++|||||||++.|+|...
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999998643
No 342
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.42 E-value=8.9e-05 Score=49.54 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
++|+|.|.|||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
No 343
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.42 E-value=0.00011 Score=49.30 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHhC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~ 23 (119)
++.|+++|.|||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998853
No 344
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.42 E-value=6.1e-05 Score=48.92 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|+|||||++++.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
No 345
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.41 E-value=8.5e-05 Score=49.85 Aligned_cols=22 Identities=9% Similarity=0.051 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHh
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~ 22 (119)
++.|+|+|+|||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999885
No 346
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.41 E-value=8.9e-05 Score=56.54 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998643
No 347
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.41 E-value=0.00012 Score=61.10 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
+++++|++|||||||++.|.+..
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSS
T ss_pred EEEEEecCCCcHHHHHHHhcccc
Confidence 68999999999999999999765
No 348
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.40 E-value=6.9e-05 Score=50.83 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
-|+|.|++||||||+++.|.+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999865
No 349
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.40 E-value=0.00012 Score=47.57 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=19.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
..|+++|++||||||+.+.|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999885
No 350
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.39 E-value=8e-05 Score=54.31 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++||||||+++.|.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999753
No 351
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.39 E-value=0.00012 Score=47.25 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-|.++|++||||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 352
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.39 E-value=0.00011 Score=49.20 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHh
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~ 22 (119)
++.|+|+|.|||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999985
No 353
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.38 E-value=0.00013 Score=47.69 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHhC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~ 23 (119)
|+.++++|++|||||||++.|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 354
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.38 E-value=0.00011 Score=50.70 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHhC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~ 23 (119)
|+.|+++|.|||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 355
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.37 E-value=0.00013 Score=60.64 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
+++++|++|||||||++.|.+..
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998765
No 356
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00013 Score=56.39 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 479999999999999999998654
No 357
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.35 E-value=0.00013 Score=48.17 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|++.|+|||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999963
No 358
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.35 E-value=8.9e-05 Score=54.96 Aligned_cols=22 Identities=23% Similarity=0.025 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++||||||++++|.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4799999999999999999764
No 359
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.34 E-value=0.00014 Score=47.34 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|++.|.+||||||+.+.|..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 360
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.34 E-value=0.00014 Score=50.23 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHh
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~ 22 (119)
|.-|+++|++|||||||-+.|.
T Consensus 1 M~li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHH
Confidence 4568999999999999999986
No 361
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.34 E-value=0.00013 Score=47.47 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
.|+++|+|||||||+.+.|.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 362
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.33 E-value=0.0001 Score=48.93 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+++|++||||||+++.|.+
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 363
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.33 E-value=0.00014 Score=47.93 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
+.|+|.|.+||||||+.+.|.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999886
No 364
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.33 E-value=0.0001 Score=51.49 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q psy6249 4 LRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~~ 24 (119)
++++|+||+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999864
No 365
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.32 E-value=0.00011 Score=55.80 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++||||||++|+|.+.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998654
No 366
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.31 E-value=0.00016 Score=47.21 Aligned_cols=21 Identities=14% Similarity=-0.012 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
+.|+++|.+||||||+.+.|.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999886
No 367
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.31 E-value=0.00011 Score=53.52 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++++|++||||||+++.|.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHh
Confidence 488999999999999999975
No 368
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.31 E-value=0.00016 Score=47.51 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~ 24 (119)
+.|++.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 369
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.31 E-value=9.6e-05 Score=55.40 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|.+..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999998654
No 370
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.31 E-value=0.00014 Score=47.21 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-.+|+|++|||||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999863
No 371
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.30 E-value=0.00016 Score=48.76 Aligned_cols=21 Identities=10% Similarity=0.078 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
+.|+|.|+|||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999986
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.30 E-value=5.4e-05 Score=50.20 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 373
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.30 E-value=0.00017 Score=47.14 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+-|++.|.+||||||+.+.|..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999964
No 374
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.30 E-value=0.00014 Score=56.28 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 579999999999999999998643
No 375
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.29 E-value=0.00018 Score=47.01 Aligned_cols=23 Identities=0% Similarity=0.120 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~ 24 (119)
+.|+++|.+||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999998754
No 376
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.29 E-value=0.00014 Score=52.24 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-|+++|++|||||||++.|.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 377
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.28 E-value=0.00018 Score=47.43 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|+++|.|||||||+.+.|..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 378
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.27 E-value=0.00011 Score=47.46 Aligned_cols=21 Identities=10% Similarity=-0.110 Sum_probs=15.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
+.|++.|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999986
No 379
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.27 E-value=0.0002 Score=48.53 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=19.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHh
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~ 22 (119)
++.|+|+|.+||||||+.+.|.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999886
No 380
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.27 E-value=0.00019 Score=48.28 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
|.|.|+|+|||||+|.-..|.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999998886
No 381
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.26 E-value=0.00018 Score=46.67 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
+.|++.|.+||||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999886
No 382
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.25 E-value=0.0002 Score=46.81 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|++.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998863
No 383
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.25 E-value=0.00017 Score=59.99 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
+++++|++|||||||++.|.+..
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999764
No 384
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.25 E-value=0.00019 Score=47.47 Aligned_cols=22 Identities=23% Similarity=0.021 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|++.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 385
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.25 E-value=0.00017 Score=58.51 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
.++++|++|||||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 386
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.25 E-value=0.00022 Score=54.36 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998654
No 387
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.25 E-value=0.00014 Score=54.91 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|||||||++.|.+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999753
No 388
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.25 E-value=0.00015 Score=52.51 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
+++++|++|+|||||++.|.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 389
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.25 E-value=0.00021 Score=46.41 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
+.|++.|.|||||||+.+.|.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998885
No 390
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.24 E-value=0.00015 Score=49.50 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q psy6249 4 LRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~~ 24 (119)
++++|+||+|||||++++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 391
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.24 E-value=0.00019 Score=46.57 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=19.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
+.|+++|.|||||||+-+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998885
No 392
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.23 E-value=0.00021 Score=46.31 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
.|+++|++||||||+.+.|.
T Consensus 13 ~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHH
Confidence 58999999999999999996
No 393
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.22 E-value=0.00021 Score=47.26 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
+.|++.|.+||||||+.+.|.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999986
No 394
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.22 E-value=9.2e-05 Score=47.21 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|+|||||++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 395
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.22 E-value=0.00022 Score=46.81 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~ 24 (119)
+.|+++|.+||||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46999999999999999999754
No 396
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.22 E-value=0.00018 Score=52.19 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy6249 4 LRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~ 22 (119)
.+|+|++|||||||+++|+
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999987
No 397
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.21 E-value=0.00021 Score=46.54 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+++|.+||||||+.+.|..
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 398
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.20 E-value=0.00023 Score=48.67 Aligned_cols=21 Identities=19% Similarity=-0.056 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
+.|++.|+|||||||+.+.|.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999986
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.20 E-value=0.00023 Score=46.14 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+++|.+||||||+.+.|..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 400
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.19 E-value=0.00021 Score=47.55 Aligned_cols=21 Identities=0% Similarity=-0.069 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-++++|++|+|||||++.+.+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999873
No 401
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.19 E-value=0.0001 Score=52.52 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
-++++|..|||||||+|.|.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999999653
No 402
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.19 E-value=0.00027 Score=54.63 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998653
No 403
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.19 E-value=0.00027 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=19.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHhC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~ 23 (119)
|..|++.|.+||||||+-+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998853
No 404
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.16 E-value=0.00019 Score=50.25 Aligned_cols=21 Identities=14% Similarity=0.022 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-++++|+||+|||||++.|.+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 405
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.16 E-value=0.00027 Score=45.03 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy6249 4 LRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~ 22 (119)
.+|+|++|+||||++.+|.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999985
No 406
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.15 E-value=0.0002 Score=51.14 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|+||+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999854
No 407
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.14 E-value=0.00022 Score=49.47 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q psy6249 4 LRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~~ 24 (119)
++++|+||+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 799999999999999999854
No 408
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0003 Score=54.42 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQS 26 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~~ 26 (119)
.++++|++|||||||++.|.|...
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 379999999999999999998654
No 409
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.14 E-value=0.00031 Score=46.91 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 410
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.11 E-value=0.00026 Score=49.95 Aligned_cols=21 Identities=10% Similarity=-0.118 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
..|+|+|++|||||||.+.|.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998875
No 411
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.10 E-value=0.00025 Score=52.83 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHTQ 25 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~~ 25 (119)
+++++|++|+|||||++.|.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998754
No 412
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.05 E-value=0.00028 Score=49.63 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-|++.|+|||||||+.+.|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999963
No 413
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.02 E-value=0.00034 Score=47.03 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-++++|++|+|||||+..+.+
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999986
No 414
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.02 E-value=0.0005 Score=47.17 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
+.|++.|++||||||+.+.|.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999886
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.02 E-value=0.00038 Score=48.18 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+++|++||||||+.+.|.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 416
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.01 E-value=0.00042 Score=48.46 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
+.|+|.|.+||||||+.+.|.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999886
No 417
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.01 E-value=0.00042 Score=47.14 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-|+|.|++||||||+.+.|..
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 418
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.00 E-value=0.00042 Score=46.13 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+++|.+||||||+.+.|..
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998863
No 419
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.00 E-value=0.0011 Score=48.15 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=27.1
Q ss_pred CeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCC
Q psy6249 47 GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDAT 89 (119)
Q Consensus 47 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~ 89 (119)
...+.+|||+|....+.. +..++++++++++|+|.+
T Consensus 182 ~v~l~iwDtaGQe~~r~~-------~~~y~~~~~~iI~v~dis 217 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRK-------WIHLFEGVTAVIFCAAIS 217 (354)
T ss_dssp --EEEEEEECCSTTGGGG-------TGGGCTTEEEEEEEEEGG
T ss_pred ceeeEEEECCCchhhhHH-------HHHHhCCCCEEEEEEECc
Confidence 467999999996544333 345779999999999997
No 420
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.99 E-value=0.00038 Score=46.12 Aligned_cols=21 Identities=19% Similarity=0.017 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++++|+||+|||||+..+.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 421
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.98 E-value=0.00036 Score=51.07 Aligned_cols=21 Identities=19% Similarity=-0.009 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++++|++|+|||||++.|.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 422
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.98 E-value=0.00027 Score=48.60 Aligned_cols=22 Identities=5% Similarity=-0.002 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
..|+++|+|||||||+.+.|..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 423
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.97 E-value=0.00051 Score=47.03 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|+|.|.+||||||+-+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 424
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.88 E-value=0.0006 Score=47.60 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|.++|+|||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 425
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.86 E-value=0.00043 Score=53.87 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=17.6
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
.++|+|++|||||||++.+.
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 47999999999999998753
No 426
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.85 E-value=0.00071 Score=43.24 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.+.+.|++|+|||++++.+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 427
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.85 E-value=6.6e-05 Score=51.34 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q psy6249 4 LRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~~ 24 (119)
++|+|++|||||||+++|.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 367899999999999999754
No 428
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.85 E-value=0.00053 Score=48.50 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
.++++|++||||||++..|.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
No 429
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.84 E-value=0.0088 Score=39.01 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=32.7
Q ss_pred CeeEEEEeCCcccccccccchHHHHHHHHhcCCCEEEEEEeCCCCchhHHHHHHHHHHcC
Q psy6249 47 GANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQDVQRGLLEKELESVG 106 (119)
Q Consensus 47 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~Vvd~~~~~~~~~~~~~~l~~~~ 106 (119)
...+.++|+|+... ......+..+|.++++++.+........+.+.++..+
T Consensus 75 ~yD~viiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~ 125 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS---------VITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQ 125 (206)
T ss_dssp TSSEEEEECCSSSS---------HHHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCC---------HHHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 46889999998542 1233455678999999998764334444555555443
No 430
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.83 E-value=0.00074 Score=45.03 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy6249 4 LRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~ 22 (119)
.+|+|++|+||||++.+|.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5789999999999999884
No 431
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0029 Score=47.20 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-|.+.|+||+|||+|.+++.+
T Consensus 217 GvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999985
No 432
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.82 E-value=0.00089 Score=45.34 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
..|+++|.+||||||+.+.|..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999874
No 433
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.81 E-value=0.0006 Score=55.41 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|||||||++.|.+.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999854
No 434
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0023 Score=47.60 Aligned_cols=21 Identities=5% Similarity=0.126 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-|++.|+||+|||+|.+++.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999975
No 435
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.81 E-value=0.00064 Score=46.44 Aligned_cols=21 Identities=5% Similarity=0.067 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++++|+||+||||+.+++.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 588999999999999999974
No 436
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.81 E-value=0.00077 Score=49.02 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHh
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~ 22 (119)
+.||+++|.++||||||++.+.
T Consensus 33 ~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHHH
Confidence 4689999999999999998874
No 437
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.80 E-value=0.00092 Score=43.88 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 438
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.78 E-value=0.00064 Score=47.18 Aligned_cols=21 Identities=14% Similarity=0.014 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-++++|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999988864
No 439
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.78 E-value=0.00064 Score=46.81 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHhCC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~~ 24 (119)
+.|+|.|.+||||||+.+.|...
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999743
No 440
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.77 E-value=0.00093 Score=44.34 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|+++|.+||||||+-+.|..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 441
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.76 E-value=0.001 Score=45.55 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHh
Q psy6249 2 FTLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~ 22 (119)
++.+++|+|||||||+...|.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHH
Confidence 689999999999999998885
No 442
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.75 E-value=0.00092 Score=49.93 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
..|+++|.|||||||+.+.|..
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
No 443
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.74 E-value=0.0045 Score=43.99 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-+.+.|+||+|||+|.+++..
T Consensus 47 ~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 488999999999999999975
No 444
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.74 E-value=0.0021 Score=43.79 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=19.3
Q ss_pred HHHHHHhcCCCEEEEEEeCCCCc
Q psy6249 70 RQVIAVARTADLVLMMLDATKQD 92 (119)
Q Consensus 70 ~~~~~~~~~~d~il~Vvd~~~~~ 92 (119)
..|..|+.++|++|||||++|..
T Consensus 117 plWr~Yy~~TdglIfVVDSsD~~ 139 (227)
T 3l82_B 117 PQIQKVCEVVDGFIYVANAEAHK 139 (227)
T ss_dssp CCHHHHHHHCSEEEEEEECBTTC
T ss_pred HHHHHHhcCCCEEEEEeccccHh
Confidence 33667889999999999999873
No 445
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.73 E-value=0.00098 Score=45.18 Aligned_cols=19 Identities=26% Similarity=0.111 Sum_probs=16.7
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy6249 4 LRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~ 22 (119)
|.++|+|||||+|.-..|.
T Consensus 32 I~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEECCTTCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5678999999999988875
No 446
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.73 E-value=0.00046 Score=52.85 Aligned_cols=22 Identities=27% Similarity=0.221 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|||||||.+.|.+.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 5899999999999999999753
No 447
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.68 E-value=0.001 Score=47.60 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy6249 4 LRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~ 22 (119)
.+|+|++|+||||++.++.
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999874
No 448
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0037 Score=46.59 Aligned_cols=21 Identities=5% Similarity=-0.072 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-|.+.|+||+|||+|.+++.+
T Consensus 217 GvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 449
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.64 E-value=0.0012 Score=43.97 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.+.+.|++|+|||++.+.+..
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998863
No 450
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.63 E-value=0.00029 Score=51.41 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
.++|+|++|||||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 57899999999999998884
No 451
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0041 Score=45.93 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-|.+.|+||+|||+|.+++.+
T Consensus 184 GvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 452
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.61 E-value=0.001 Score=49.10 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-++|+|++|+|||||++++.+
T Consensus 28 ~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999974
No 453
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.56 E-value=0.0013 Score=48.48 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-|+++|+|||||||+.+.|..
T Consensus 260 lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 454
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.55 E-value=0.0011 Score=50.25 Aligned_cols=19 Identities=5% Similarity=-0.036 Sum_probs=17.2
Q ss_pred eEEEEcCCCCCHHHHHHHH
Q psy6249 3 TLRVLDLKCSHESTLLSTL 21 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l 21 (119)
.++++|++|||||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999993
No 455
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.54 E-value=0.0016 Score=42.77 Aligned_cols=22 Identities=14% Similarity=0.049 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
..+.+.|++|+|||+|..++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998864
No 456
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.0011 Score=47.11 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q psy6249 4 LRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~ 23 (119)
++|.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999876
No 457
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.52 E-value=0.0015 Score=47.43 Aligned_cols=21 Identities=10% Similarity=0.060 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-.+++|++|+||||+++++..
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 368999999999999999863
No 458
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.51 E-value=0.0011 Score=42.29 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.+.+.|++|+|||++...+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998864
No 459
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.50 E-value=0.0013 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.101 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|+|||||++.+.+.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999854
No 460
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.49 E-value=0.00097 Score=47.40 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
-.+|+|++|||||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 36899999999999999997
No 461
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.48 E-value=0.0019 Score=43.77 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+-|++.|.+||||||+.+.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 462
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.47 E-value=0.0017 Score=43.58 Aligned_cols=20 Identities=0% Similarity=-0.074 Sum_probs=16.7
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
-++++|+||+|||||...+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999966553
No 463
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0079 Score=44.81 Aligned_cols=21 Identities=5% Similarity=0.082 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-|.+.|+||+|||+|.+++.+
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHH
Confidence 488999999999999999985
No 464
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.43 E-value=0.0015 Score=45.35 Aligned_cols=21 Identities=10% Similarity=0.096 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-+.+.|+||+|||++.+++.+
T Consensus 56 ~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 588999999999999999975
No 465
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.43 E-value=0.002 Score=42.55 Aligned_cols=21 Identities=5% Similarity=0.050 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-+.+.|++|+||||+++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998863
No 466
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.41 E-value=0.0014 Score=44.33 Aligned_cols=21 Identities=14% Similarity=0.040 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.+++.|+||+||||+..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999887763
No 467
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0062 Score=45.76 Aligned_cols=21 Identities=0% Similarity=-0.009 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-|.+.|+||+|||+|.+++.+
T Consensus 245 GILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHh
Confidence 488999999999999999975
No 468
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.38 E-value=0.0022 Score=45.86 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++|.|++|+||||+++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 469
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.36 E-value=0.0023 Score=41.76 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.+.+.|++|+|||++.+.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 470
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.36 E-value=0.0023 Score=43.08 Aligned_cols=20 Identities=15% Similarity=-0.014 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
-|+|-|++||||||+.+.|.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58899999999999999985
No 471
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.34 E-value=0.0018 Score=46.00 Aligned_cols=21 Identities=5% Similarity=0.170 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-+++.|++|+|||||++.+.+
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 472
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.33 E-value=0.0018 Score=51.43 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|+|||||++.+.+.
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhh
Confidence 4789999999999999998754
No 473
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.33 E-value=0.0027 Score=42.16 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHhC
Q psy6249 2 FTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 2 ~~v~iiG~~~~GKStlin~l~~ 23 (119)
+.|+++|.+||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 474
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.32 E-value=0.0023 Score=44.11 Aligned_cols=21 Identities=5% Similarity=0.059 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-+.+.|+||+|||++.+++..
T Consensus 53 ~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999974
No 475
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.31 E-value=0.0024 Score=44.89 Aligned_cols=22 Identities=5% Similarity=0.031 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
-+.+.|+||+|||++.+++.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 4889999999999999999753
No 476
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.30 E-value=0.0026 Score=43.17 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-+.+.|+||+|||++.+++..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
No 477
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.30 E-value=0.0019 Score=51.43 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|+|||||++.+.+.
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4789999999999999998753
No 478
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.0021 Score=45.77 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q psy6249 4 LRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 4 v~iiG~~~~GKStlin~l~~ 23 (119)
++|.|++|+||||+++.+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999875
No 479
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.28 E-value=0.0023 Score=46.53 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+++|++|+||||+...|.+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999987753
No 480
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.22 E-value=0.0022 Score=48.85 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-++++|+||+|||||.+++.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999974
No 481
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.20 E-value=0.0029 Score=44.40 Aligned_cols=21 Identities=14% Similarity=-0.034 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-+.+.|+||+|||+|.+++..
T Consensus 38 ~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 366779999999999999974
No 482
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.19 E-value=0.002 Score=43.95 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=15.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
-|+|-|++||||||+.+.|.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp EEEEECCC---CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999885
No 483
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.18 E-value=0.003 Score=43.28 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
-|+|.|++||||||+.+.|.
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
No 484
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.16 E-value=0.0031 Score=44.48 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-+.+.|+||+|||||++++.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999874
No 485
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.14 E-value=0.0026 Score=48.12 Aligned_cols=22 Identities=5% Similarity=0.024 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
-++++|+||+|||+|++++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999999854
No 486
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.14 E-value=0.0034 Score=43.73 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++|.|+||+|||++.+++..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 489999999999999998864
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.13 E-value=0.0034 Score=45.37 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
-|+|+|++|||||||-..|..
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 589999999999999998864
No 488
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.12 E-value=0.0027 Score=49.41 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=14.8
Q ss_pred eEEEEcCCCCCHHHHH
Q psy6249 3 TLRVLDLKCSHESTLL 18 (119)
Q Consensus 3 ~v~iiG~~~~GKStli 18 (119)
.++++|++|||||||+
T Consensus 46 ~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHh
Confidence 5899999999999996
No 489
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.11 E-value=0.012 Score=42.60 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++|.|+||+|||++..++..
T Consensus 150 ~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 490
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.10 E-value=0.0028 Score=48.00 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.++++|++|+|||||++.+.+.
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 491
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.10 E-value=0.0039 Score=39.03 Aligned_cols=22 Identities=9% Similarity=-0.065 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
.|.+.|+||+|||++..++...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999753
No 492
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.09 E-value=0.0037 Score=44.86 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.|+++|++|||||||-..|..
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 493
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.09 E-value=0.0036 Score=45.46 Aligned_cols=21 Identities=14% Similarity=0.009 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.++++|++|+||||+++.+..
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 494
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.09 E-value=0.0037 Score=42.11 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
-|+|-|.+||||||.++.|.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~ 24 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVV 24 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999885
No 495
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.08 E-value=0.005 Score=41.55 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHhC
Q psy6249 1 MFTLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 1 ~~~v~iiG~~~~GKStlin~l~~ 23 (119)
|+-|++.|..||||||+.+.|..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998864
No 496
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.07 E-value=0.0036 Score=43.57 Aligned_cols=21 Identities=5% Similarity=0.026 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.+.|.|+||+|||++.+++..
T Consensus 69 ~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999987753
No 497
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.07 E-value=0.0039 Score=43.22 Aligned_cols=21 Identities=5% Similarity=0.129 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTH 23 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~ 23 (119)
.+.+.|+||+|||++.+++..
T Consensus 52 ~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999863
No 498
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.07 E-value=0.004 Score=42.34 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
-|+|.|.+||||||+.+.|.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999886
No 499
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.06 E-value=0.0038 Score=42.01 Aligned_cols=22 Identities=9% Similarity=-0.062 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy6249 3 TLRVLDLKCSHESTLLSTLTHT 24 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~~~ 24 (119)
-|+|+|++|+|||||...|...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999743
No 500
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.05 E-value=0.0036 Score=46.11 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=17.5
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q psy6249 3 TLRVLDLKCSHESTLLSTLT 22 (119)
Q Consensus 3 ~v~iiG~~~~GKStlin~l~ 22 (119)
-++|+|+||+|||||+..|.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999664
Done!