RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6249
(119 letters)
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 58.8 bits (142), Expect = 4e-12
Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 34/139 (24%)
Query: 15 STLLSTLTHTQSEAASYEFTTLTCIPGVIE------------YKG-----ANIQLLDLPG 57
STL + LT EAA+Y F T+ GV+ K ++ +D+ G
Sbjct: 16 STLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAG 75
Query: 58 IIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQD-----------------VQRGLLEK 100
++ GA++G+G G + +A R D + ++ + D + L
Sbjct: 76 LVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALA 135
Query: 101 ELESVGIRLNKKKPNIYFK 119
+L+S + + +
Sbjct: 136 DLDSCERAIQRLQKRAKGG 154
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 56.5 bits (135), Expect = 1e-11
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 15 STLLSTLTHTQSEAASYEFTTLTCIPGVIEY-KGANIQLLDLPGIIEGAAQGKGRGRQVI 73
STLLS ++ + + A Y FTTL G++E G + + DLPG+IEGA QG G G Q +
Sbjct: 15 STLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFL 74
Query: 74 AVARTADLVLMMLDATKQD 92
+++ ++D + +
Sbjct: 75 RHIERTRVIVHVIDMSGLE 93
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 55.7 bits (133), Expect = 6e-11
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 37/142 (26%)
Query: 15 STLLSTLTHTQSEAASYEFTTLTCIPGVI------------------------EYKGANI 50
ST S T E A+Y FTT+ GV +
Sbjct: 14 STFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPV 73
Query: 51 QLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQDVQRGL------------- 97
+++D+ G++ GA +G+G G + + R A ++ ++DAT + G
Sbjct: 74 KMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEF 133
Query: 98 LEKELESVGIRLNKKKPNIYFK 119
LE+E++ + K + + K
Sbjct: 134 LEREIDYWIYGILSKGWDKFAK 155
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 52.7 bits (125), Expect = 3e-10
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 15 STLLSTLTHTQSEAASYEFTTLTCIPG-VIEYKGANIQLLDLPGIIEGAAQGKGRGRQVI 73
S+LL+ +T + A Y FTTL+ G V + L D+PGIIEGA++GKG G + +
Sbjct: 15 SSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFL 74
Query: 74 AVARTADLVLMMLD 87
++L +LD
Sbjct: 75 RHIARTRVLLYVLD 88
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 47.5 bits (112), Expect = 4e-08
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 18/96 (18%)
Query: 15 STLLSTLTHTQ-SEAASYEFTTLTCIPGVIE-----------------YKGANIQLLDLP 56
ST +T + A+Y + T+ + A + + D+
Sbjct: 24 STFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA 83
Query: 57 GIIEGAAQGKGRGRQVIAVARTADLVLMMLDATKQD 92
G+ +GA+ G G G ++ R D + ++ A
Sbjct: 84 GLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDA 119
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 28.3 bits (61), Expect = 0.22
Identities = 15/69 (21%), Positives = 19/69 (27%), Gaps = 2/69 (2%)
Query: 31 YEFTTLTCIPGVIEYKG--ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDA 88
L + GV G ANI L + A G G +
Sbjct: 270 RLAQGLEGLGGVEVLGGTEANILFCRLDSAMIDALLKAGFGFYHDRWGPNVVRFVTSFAT 329
Query: 89 TKQDVQRGL 97
T +DV L
Sbjct: 330 TAEDVDHLL 338
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 26.7 bits (58), Expect = 0.72
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 70 RQVIAVARTADLVLMMLDA 88
R+V + D+V ++DA
Sbjct: 7 REVTEKLKLIDIVYELVDA 25
>d1pm4a_ b.135.1.1 (A:) Superantigen (mitogen) Ypm {Yersinia
pseudotuberculosis [TaxId: 633]}
Length = 117
Score = 25.8 bits (56), Expect = 1.0
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 59 IEGAAQGKGRGRQVIAVART----ADLVLMMLDATKQD----VQRGLLEKELE 103
I G +GK RG ++ AV + AD+ L++L + ++R ++K L+
Sbjct: 19 IIGNKEGKTRGGELYAVLHSTNVNADMTLILLRNVGGNGWGEIKRNDIDKPLK 71
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 26.2 bits (57), Expect = 1.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 83 LMMLDATKQDVQRGLLEKELESVGIRLNK 111
L+++D + G EK LE+ I NK
Sbjct: 344 LILVDLRSKGTDGGRAEKVLEACSIACNK 372
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 25.3 bits (55), Expect = 1.8
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 7/48 (14%)
Query: 43 IEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATK 90
E + +D PG + +I A D ++++ A
Sbjct: 62 YETAKRHYSHVDCPG-------HADYIKNMITGAAQMDGAILVVSAAD 102
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 25.0 bits (54), Expect = 2.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 80 DLVLMMLDATKQDVQRGLLEKELESVGIRLNK 111
D L+++D Q + EK L+ VGI +NK
Sbjct: 309 DNHLLLVDLRPQQLTGKTAEKVLDEVGITVNK 340
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396,
C-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 81
Score = 24.0 bits (52), Expect = 3.1
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 6 VLDLKCSHESTLLSTLTHTQSEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQG 65
L + S E L+TL++ A +T ++ G I+++D + + A G
Sbjct: 25 TLSIYLSREE--LATLSNMTVSNAIRTLSTFVSE-RMLALDGKRIKIIDCDRLQKTARSG 81
>d1bcoa1 b.48.1.1 (A:481-560) mu transposase, C-terminal domain
{Bacteriophage mu [TaxId: 10677]}
Length = 80
Score = 24.0 bits (52), Expect = 3.1
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 79 ADLVLMMLDATKQDVQRGLLEKELESVGIRLNKKKPNIYF 118
+++L A +V R ++ K N+Y+
Sbjct: 3 EQKRMLLLPAEAVNVSRKGEFTLKVGGSLKGAK---NVYY 39
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 24.2 bits (52), Expect = 4.9
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 33 FTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATK 90
T+ E + ++D PG + + +I AD ++++
Sbjct: 69 GITIDIALWKFETPKYQVTVIDAPG-------HRDFIKNMITGTSQADCAILIIAGGV 119
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 23.5 bits (49), Expect = 7.0
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 15 STLLSTLTHTQSEAASYEFTTLTC 38
STL+ LT + T
Sbjct: 14 STLIYRLTGKKVRRGKRPGVTRKI 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.373
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 385,825
Number of extensions: 14985
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 22
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)