Query psy6250
Match_columns 778
No_of_seqs 274 out of 1039
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 21:34:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2189|consensus 100.0 3E-205 6E-210 1713.5 56.1 688 1-777 99-805 (829)
2 PF01496 V_ATPase_I: V-type AT 100.0 3E-136 7E-141 1225.2 9.6 656 2-777 75-743 (759)
3 PRK05771 V-type ATP synthase s 100.0 7.4E-73 1.6E-77 667.4 48.7 401 3-495 95-496 (646)
4 COG1269 NtpI Archaeal/vacuolar 100.0 5E-73 1.1E-77 665.8 46.0 448 127-777 186-636 (660)
5 KOG2189|consensus 99.0 1.8E-10 4E-15 133.2 2.1 94 24-122 427-521 (829)
6 PF01496 V_ATPase_I: V-type AT 77.6 0.73 1.6E-05 56.8 0.0 41 45-85 410-450 (759)
7 PF05767 Pox_A14: Poxvirus vir 68.1 24 0.00053 31.8 7.2 56 447-502 13-68 (92)
8 PF05377 FlaC_arch: Flagella a 47.0 1E+02 0.0023 25.4 6.9 46 172-221 2-47 (55)
9 PRK01203 prefoldin subunit alp 42.3 3.3E+02 0.0072 26.4 11.4 31 171-201 88-118 (130)
10 PF15192 TMEM213: TMEM213 fami 38.1 39 0.00084 29.3 3.3 25 735-761 45-69 (82)
11 KOG0728|consensus 37.2 3.9E+02 0.0086 29.0 11.3 65 2-72 25-92 (404)
12 PF12325 TMF_TATA_bd: TATA ele 34.1 2.5E+02 0.0055 26.8 8.5 46 175-220 66-114 (120)
13 PF12725 DUF3810: Protein of u 32.6 93 0.002 34.5 6.2 58 319-380 23-81 (318)
14 COG3352 FlaC Putative archaeal 32.4 4.3E+02 0.0094 26.3 9.9 80 141-220 47-133 (157)
15 PF06103 DUF948: Bacterial pro 32.4 3.4E+02 0.0074 23.9 8.8 30 170-199 26-55 (90)
16 PF07666 MpPF26: M penetrans p 32.1 2.1E+02 0.0045 27.8 7.7 78 296-378 42-120 (130)
17 PF01102 Glycophorin_A: Glycop 27.9 58 0.0013 31.2 3.1 13 313-325 67-79 (122)
18 KOG4551|consensus 27.5 86 0.0019 31.3 4.2 28 689-721 26-53 (184)
19 PF11068 YlqD: YlqD protein; 27.4 3.9E+02 0.0084 25.9 8.7 52 165-216 15-70 (131)
20 PHA02898 virion envelope prote 26.5 2.6E+02 0.0056 25.4 6.6 56 447-502 13-68 (92)
21 PF11348 DUF3150: Protein of u 26.1 2.1E+02 0.0045 30.9 7.3 64 141-210 55-118 (257)
22 PRK10692 hypothetical protein; 25.9 2.2E+02 0.0048 25.7 6.0 37 449-493 14-50 (92)
23 COG1173 DppC ABC-type dipeptid 25.7 4.2E+02 0.0092 29.0 9.8 48 421-477 65-120 (289)
24 PF02183 HALZ: Homeobox associ 24.8 1.7E+02 0.0036 23.1 4.6 32 5-36 2-33 (45)
25 PF00509 Hemagglutinin: Haemag 24.6 3.6E+02 0.0077 32.2 9.2 56 141-196 374-429 (550)
26 COG2383 Uncharacterized conser 24.6 1.2E+02 0.0026 28.1 4.3 24 317-340 15-38 (109)
27 PF06156 DUF972: Protein of un 24.5 1.4E+02 0.0029 28.0 4.8 40 2-41 9-48 (107)
28 KOG2264|consensus 23.9 1.3E+02 0.0027 35.8 5.3 54 144-197 81-134 (907)
29 COG1377 FlhB Flagellar biosynt 23.8 9.3E+02 0.02 27.4 12.0 36 445-480 151-186 (363)
30 PF06103 DUF948: Bacterial pro 22.9 5.3E+02 0.011 22.7 8.9 53 167-219 30-82 (90)
31 PF15290 Syntaphilin: Golgi-lo 22.9 4.2E+02 0.0091 29.0 8.6 53 170-222 75-137 (305)
32 PF08946 Osmo_CC: Osmosensory 22.0 1.8E+02 0.0038 23.1 4.1 28 172-199 14-41 (46)
33 PRK15406 oligopeptide ABC tran 21.5 3.7E+02 0.0081 29.5 8.4 52 421-481 81-140 (302)
34 PF10762 DUF2583: Protein of u 20.2 3E+02 0.0065 24.7 5.7 36 449-492 14-49 (89)
No 1
>KOG2189|consensus
Probab=100.00 E-value=2.8e-205 Score=1713.51 Aligned_cols=688 Identities=51% Similarity=0.878 Sum_probs=606.6
Q ss_pred CchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhchhhhhhhcccc-------cc-hHHHh-h-----ccccceEee
Q psy6250 1 NHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQTFFHEIWNIFF-------GG-RYIIL-L-----MGLFSIYTG 66 (778)
Q Consensus 1 ~~~~~~e~el~e~~~n~~~L~~~~~~L~E~k~VL~k~~~~~~e~~~~~~-------~~-r~li~-~-----m~~fs~~tG 66 (778)
++++++|+|++|+|+|.++|++|+++|+|+|+||+|+++||+....... .+ ..+.. . ..++.|+||
T Consensus 99 ~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~t~~Ff~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~FvaG 178 (829)
T KOG2189|consen 99 EQLEKLESELRELNANKEALKANYNELLELKYVLEKTDEFFSTSVQESFEDDETADLGEGPLESAEKGPFDGLKLGFVAG 178 (829)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhcchhhhhhcccccchhccCCCCcccceeEEe
Confidence 3689999999999999999999999999999999999999986221111 11 11111 1 236679999
Q ss_pred eeecCcccccccccc-cccc---ccccccccccccccccCCCCCCCCCCCcccccccccccccCcccccEEEEEEEeChh
Q psy6250 67 LIYNDFFSKSISVFG-SAWK---NNYNLSTIMENRDLILDPATSDYDQIPYPFVKFDYSLLFQGNEIYKTVFVAFFQGEQ 142 (778)
Q Consensus 67 ~I~~~~~s~s~~~F~-~~wr---gn~~~~~~~~~~~~~lDP~~~~~~~~Pypf~~~d~~~~~tg~~~~k~vfii~~~g~~ 142 (778)
+|.+++ ...|+ ++|| ||++.++. +++++..||. ||+.++|+||||||+|++
T Consensus 179 vI~r~k----~~~fER~LWRa~Rgn~f~r~~-~ie~~l~dp~--------------------Tge~~~K~vFivF~~Geq 233 (829)
T KOG2189|consen 179 VINREK----VFAFERMLWRACRGNLFIRQS-DIEEPLEDPK--------------------TGEPVEKNVFIVFFQGEQ 233 (829)
T ss_pred eechhH----HHHHHHHHHHHhccceEEEee-cccccccCCc--------------------cCCcceeEEEEEEeecHH
Confidence 999999 99999 9999 99999999 9999999998 999999999999999999
Q ss_pred hHHHHHHhhccccceecCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6250 143 LKSRVKKVCSGFHASFYPCPSAHQERTDMVQGVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVMVRKMKAIYHTLN 222 (778)
Q Consensus 143 ~~~kv~kI~~~f~~~~~~~p~~~~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~~~l~~w~~~v~k~k~iy~~LN 222 (778)
+++||+|||++|+|+.||||++++++++++.+++.|++|++.++++|++++.++|.++++++..|..+|+|+|+|||+||
T Consensus 234 l~~kIkKIcd~f~a~~yp~p~~~~er~~~~~~v~~ri~DL~~Vl~~t~~~r~~vL~~~~~~l~~W~~~v~K~KaIyhtLN 313 (829)
T KOG2189|consen 234 LKQKIKKICDGFGATLYPCPESPEERKEMLLEVNTRISDLQTVLDQTEDHRSRVLQAAAKNLPSWLIKVRKEKAIYHTLN 313 (829)
T ss_pred HHHHHHHHHhccCcEeecCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcEEEEEEeeecCCHHHHHHHHHccccccCCccceeeeccCCCCCCCccccCCccchhHHHHHHhhcCCCCCc
Q psy6250 223 SFNMDVTKKCLIGECWVPVKHLTFVRLTLAEGSKAVGSSIPSFLNVIETNEMPPTFNQTNRFTQGFQNLIDSYGIATYRE 302 (778)
Q Consensus 223 ~~~~~~t~~~~i~eGWvP~~~~~~i~~~L~~~~~~~~~~v~~~~~~~~~~~~PPT~lknnkft~pFq~Ivd~YGiP~Y~E 302 (778)
+|++|+|+||+++|||||+.|++.+|++|++++..+|++|+++++.+++++.||||+||||||++||+|||+||+++|+|
T Consensus 314 ~fn~Dvt~KCLIaE~W~P~~dl~~vq~aL~~~~~~sgS~v~~i~nv~~T~e~PPTy~RTNKFT~~FQ~IvDaYGVa~YrE 393 (829)
T KOG2189|consen 314 MFNFDVTQKCLIAEGWCPVADLPDLQRALERGSEESGSQVPSILNVMETNEMPPTYFRTNKFTAGFQNIVDAYGVASYRE 393 (829)
T ss_pred ccCccccCceEEEEeecchhhHHHHHHHHHHhhhhcCCcchhhHhheecCCCCCcchhcchhhHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhhcccchhhHHhhhhhHHHHHHHhHHHHHHHHHhcccc
Q psy6250 303 LNPGLYTIVTFPFLFGIMFGDAGHGIILTLFGAFMVIWEQKLMKKKTTNEIWNIFFGGRYIILLMGLFSIYTGLIYNDFF 382 (778)
Q Consensus 303 iDPt~~~~itFPffFG~MfGDvGhGlllll~~l~l~~k~kkl~~~k~~~e~~~~lf~gRyiillmGi~Si~~G~lYgd~F 382 (778)
+||+|+|+|||||+||+||||+|||++|+++|+|++++|||+.++|..+|+|+|+|+|||||++||+||||+||||||||
T Consensus 394 vNPa~yTiITFPFLFAVMFGD~GHG~imlL~al~~Vl~Ekkl~~~k~~~EI~~mfF~GRYIIlLMGlFSiYTGliYND~F 473 (829)
T KOG2189|consen 394 VNPAPYTIITFPFLFAVMFGDLGHGLIMLLAALWMVLNEKKLASQKIGDEIFNMFFGGRYIILLMGLFSIYTGLIYNDFF 473 (829)
T ss_pred cCCCceeEeehHHHHHHHhcccchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred cCccccccccccccCcccccccCcceeecCCCCC-CCCCCccCCCCchhhhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q psy6250 383 SKSISVFGSAWKNNYNLSTIMENRDLILDPATSD-YDQIPYPFGLDPVWQVAENKIIFLNSYKMKLSIIFGVVHMIFGVT 461 (778)
Q Consensus 383 G~~i~iFgs~w~~~~~~~~~~~~~~l~l~p~~~~-~~~~pypfGiDPiW~~a~N~L~FlNS~kMklSIiiGvihm~~G~i 461 (778)
|+++|+|||+|.+.++.+.......+. .|..++ ..+.|||||+||+||.|.|+|.|+||||||||||+||+||+||++
T Consensus 474 Sks~niFgS~W~~~~~~~~~~~~e~~~-~p~~~~~~~~gpYPfGvDPiW~~a~N~L~FLNS~KMKmSIIlGi~hM~fGv~ 552 (829)
T KOG2189|consen 474 SKSMNIFGSSWSNPYNVTAVLCSEALL-TPEIGGAKFGGPYPFGVDPIWHLADNKLSFLNSMKMKMSIILGIIHMTFGVI 552 (829)
T ss_pred ccccccccCcccCccccchhccccccc-cCCCCcccccCCCCCcCChhhhcccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999997654322221122221 143332 245699999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCChHHHHHHHhhhcCCCCCCCCCc
Q psy6250 462 LSVINHVHFRKPVNILLEFLPQLIFLVLLFGYMVTLMFMKWIMYAPQNPLLTSPRCAPSVLILFINMMLFKHSIPFPGCE 541 (778)
Q Consensus 462 L~~~N~i~~~~~~d~~~e~ip~llfl~~lfgYl~~lI~~KW~~~~~~~~~~~~~~~aPSll~~lInm~l~~~~~~~~~~~ 541 (778)
++++|+++||++.|++++||||++||.|+|||||++||||||.+|+. ++.||||||+++|||||+|++.+ +
T Consensus 553 lS~~N~~~Fk~~~~I~~~FIPq~iFl~~iFgYL~~~IiyKW~~~~~~-----~~~~aPslLi~lInMFl~~~~~~----~ 623 (829)
T KOG2189|consen 553 LSVFNHIYFKSKLDIILVFIPQLIFLLSLFGYLVFLIIYKWLVFWAK-----TSNCAPSLLIMLINMFLFPGTDA----G 623 (829)
T ss_pred HHHHHHHHhccchheeeeccHHHHHHHHHHHHHHHHHHHHHhhcccc-----cCCCCchHHHHHHHHHhCCCCCC----c
Confidence 99999999999999999999999999999999999999999999987 34689999999999999999875 2
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHhhccccchhhhhhchhhhhccccccCCCCCCccccCCCccchhhHHHHHhhhhcch
Q psy6250 542 EYMYESQHQVQTVLVLISLACIPVMLLGKPIYLIFFASKNKHKHQQVSNNGDLQGGIELHSNDEHQVQTVLVLISLACIP 621 (778)
Q Consensus 542 ~~ly~gQ~~vq~~l~~ia~~~vP~MLl~kPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (778)
.+|||||+.||.+|+++|++|||||||+||++++++ ++++.+ ..+ . ....+..+ .+
T Consensus 624 ~~lyp~Q~~vQ~~ll~~Al~cVPwmLl~KPl~l~~~--~~~r~~--e~~--~-~~~~~~~~--~~--------------- 679 (829)
T KOG2189|consen 624 FQLYPGQKQVQLILLVLALVCVPWMLLGKPLYLRRR--HKNRLR--ERH--Q-GQSAGRLD--ST--------------- 679 (829)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHhcchHHHHHH--hhhccc--ccc--c-cchhcccc--cc---------------
Confidence 499999999999999999999999999999999862 111100 000 0 00000000 00
Q ss_pred hhccCCchhhhhhhcccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCChhhhhhhhheeeeccccccccchh
Q psy6250 622 VMLLGKPIYLIFFASKNKHKHQQVSNNGDLQGGIELHSNDEVLPSSPEGPEEEHEEPAEILIHQSIHTIEYVLSTISHTA 701 (778)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~ihq~IhTIEf~Lg~iSnTA 701 (778)
.....+..+ .+++..+.+++++++|+||||||||+|||||||||||||||
T Consensus 680 --------------------------~~~~~~~~~----~~~~~~~~~~~~~~e~~fseI~iHQaIHTIEf~LgcVShTA 729 (829)
T KOG2189|consen 680 --------------------------DGSVHGPTS----DAEDGGGVGDGEEEEFEFSEIFIHQAIHTIEFVLGCVSHTA 729 (829)
T ss_pred --------------------------cccccCCcc----ccccCCCCCCCCcCccchhhHHhhhhhhhhhhhhccccchH
Confidence 000000000 00000011234566889999999999999999999999999
Q ss_pred HHHHHhHhhcchhHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccceeeccc
Q psy6250 702 SYLRLWALSLAHAQLSEVLWNMVLKLGLQSESHAGAIMLYISFALWAMFTLAILVMMEGLSAFLHTLRLHWKERVF 777 (778)
Q Consensus 702 SYLRLWALSLAH~qLs~V~~~~~~~~~l~~~~~~g~i~~~~~f~~~a~~T~~iL~~Me~lsafLHaLRLhWVEfq~ 777 (778)
||||||||||||||||+|||+||+.+|+..+++.|.++++++|++||++|++||++|||||||||||||||||||+
T Consensus 730 SYLRLWALSLAHAQLSeVLW~Mvl~~g~~~~~~~g~i~~~~if~~f~~lTv~ILv~MEGLSAfLHaLRLHWVEFqs 805 (829)
T KOG2189|consen 730 SYLRLWALSLAHAQLSEVLWTMVLRIGLGLGGYVGVIGLVALFGVFAVLTVAILVLMEGLSAFLHALRLHWVEFQS 805 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999988889899999999999999999999999999999999999997
No 2
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=100.00 E-value=3e-136 Score=1225.23 Aligned_cols=656 Identities=42% Similarity=0.700 Sum_probs=151.1
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhchhhhhhh-cc-------cccchHHHh-hccccceEeeeeecCc
Q psy6250 2 HLERTESEILELSQNAINLKSNYLELTELKHVLEKTQTFFHEIW-NI-------FFGGRYIIL-LMGLFSIYTGLIYNDF 72 (778)
Q Consensus 2 ~~~~~e~el~e~~~n~~~L~~~~~~L~E~k~VL~k~~~~~~e~~-~~-------~~~~r~li~-~m~~fs~~tG~I~~~~ 72 (778)
+++++|+++++++++.++|+++++++.|.+++|++..+.+++.. .. ..+...+-. ...++++++|+|.+++
T Consensus 75 ~l~~le~~l~e~~~~~e~L~~~~~~L~E~~~~L~~~~~~l~~~~~~~l~~~~~l~~~~~~l~~~~~~~~~f~~G~I~~~~ 154 (759)
T PF01496_consen 75 ELEELEEELRELNENLEKLEEELNELEEEKNVLEEEIEFLEELKLEELEPWKNLDIDLEELESSKFLNLGFIAGVIPREK 154 (759)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhhhccccceeeeEEEEEEehhh
Confidence 56788999999999999999999999999999999999887741 11 001111100 1224567899999999
Q ss_pred ccccccccc-cccc---ccccccccccccccccCCCCCCCCCCCcccccccccccccCcccccEEEEEEEeChhhHHHHH
Q psy6250 73 FSKSISVFG-SAWK---NNYNLSTIMENRDLILDPATSDYDQIPYPFVKFDYSLLFQGNEIYKTVFVAFFQGEQLKSRVK 148 (778)
Q Consensus 73 ~s~s~~~F~-~~wr---gn~~~~~~~~~~~~~lDP~~~~~~~~Pypf~~~d~~~~~tg~~~~k~vfii~~~g~~~~~kv~ 148 (778)
...|+ .+|| ||+++++. ++++...|+. +.++|++|++++++++.++|++
T Consensus 155 ----~~~f~~~l~r~~~~N~fi~~~-~Ie~~~~d~~----------------------e~~~k~v~vv~~~~~~~~~kv~ 207 (759)
T PF01496_consen 155 ----IESFERILWRATRGNIFIRFS-EIEEILEDPK----------------------EEVEKEVFVVFFSGKELEEKVK 207 (759)
T ss_dssp ----HHHHHHHHHHHHTT-----S-------EEEE-----------------------EE-SSSEEEEEEEEGGGHHHHH
T ss_pred ----HHHHHHHHHHhccCCeEEEEE-eeeccccccc----------------------ceeeeeeEEEEEEchhhHHHHH
Confidence 99999 9998 89999888 7766555552 4567999999999999999999
Q ss_pred HhhccccceecCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy6250 149 KVCSGFHASFYPCPSAHQERTDMVQGVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVMVRKMKAIYHTLNSFNMDV 228 (778)
Q Consensus 149 kI~~~f~~~~~~~p~~~~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~~~l~~w~~~v~k~k~iy~~LN~~~~~~ 228 (778)
|||+++|++++++|+.++++++.++++++|+++++++++++++++++.+++..+.+..|+..+++++++|+++|++..+.
T Consensus 208 ~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 287 (759)
T PF01496_consen 208 KILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEALNKFASTE 287 (759)
T ss_dssp HHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999887554
Q ss_pred CCcEEEEEEeeecCCHHHHHHHHHccccccCCccceeeeccCCCCCCCccccCCccchhHHHHHHhhcCCCCCccCCcch
Q psy6250 229 TKKCLIGECWVPVKHLTFVRLTLAEGSKAVGSSIPSFLNVIETNEMPPTFNQTNRFTQGFQNLIDSYGIATYRELNPGLY 308 (778)
Q Consensus 229 t~~~~i~eGWvP~~~~~~i~~~L~~~~~~~~~~v~~~~~~~~~~~~PPT~lknnkft~pFq~Ivd~YGiP~Y~EiDPt~~ 308 (778)
+ ++++++||||++++++++++|++.+......+....++++++++|||++|||+|++|||.||++||+|+|+|+||||+
T Consensus 288 ~-~~~~~~GWvP~~~~~~l~~~l~~~~~~~~~~v~~~~~~~~~~~~pPt~lknn~~~~pFe~iv~~Yg~P~Y~EiDPt~~ 366 (759)
T PF01496_consen 288 T-NVFILEGWVPEKDVEELKKALEEATDGSEYSVPSIEEEPEEEEEPPTKLKNNKFTKPFEMIVDMYGLPKYREIDPTPF 366 (759)
T ss_dssp ---SEEEEEEE-TTTHHHHHHT--SS-EEEE-------------------------------------------------
T ss_pred c-cEEEEEEeccHHHHHHHHHHHHhhccccccccccccccccccCCCCeeecCchhhhHHHHHHHhcCCCCCCccccchH
Confidence 4 899999999999999999999998765433334445556678899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhhcccchhhHHhhhhhHHHHHHHhHHHHHHHHHhcccccCcccc
Q psy6250 309 TIVTFPFLFGIMFGDAGHGIILTLFGAFMVIWEQKLMKKKTTNEIWNIFFGGRYIILLMGLFSIYTGLIYNDFFSKSISV 388 (778)
Q Consensus 309 ~~itFPffFG~MfGDvGhGlllll~~l~l~~k~kkl~~~k~~~e~~~~lf~gRyiillmGi~Si~~G~lYgd~FG~~i~i 388 (778)
+++||||||||||||+|||++|+++|++++++.++.++++ +|++++++++||++++||++|||||+|||||||.++++
T Consensus 367 ~ai~fp~fFG~MfGD~GyGlll~l~~l~l~~~~~~~~~~~--~e~~~~~~~~~~il~~~gi~si~~G~iyg~~FG~~~~~ 444 (759)
T PF01496_consen 367 MAITFPFFFGMMFGDAGYGLLLLLFGLLLIKKFKKLKKMK--NEIFNMLFKLRYILLLMGISSIIFGFIYGSFFGDSLNI 444 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCcchh
Confidence 9999999999999999999999999999998887776433 89999999999999999999999999999999999999
Q ss_pred ccccccccCcccccccCcceeecCCCCCCCCCCccCCCCchhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy6250 389 FGSAWKNNYNLSTIMENRDLILDPATSDYDQIPYPFGLDPVWQVAENKIIFLNSYKMKLSIIFGVVHMIFGVTLSVINHV 468 (778)
Q Consensus 389 Fgs~w~~~~~~~~~~~~~~l~l~p~~~~~~~~pypfGiDPiW~~a~N~L~FlNS~kMklSIiiGvihm~~G~iL~~~N~i 468 (778)
|+++|..... ..+...+...|. .+|||||+||.|+.+.|+|+|+||+|||+||++|++||++|++++++|++
T Consensus 445 f~~~~~~~~~---~~~~~~~~~~~~-----~~~yp~g~dp~~~~~~n~l~f~ns~~m~~SiiiGvi~m~~G~~l~~~n~i 516 (759)
T PF01496_consen 445 FGSGWNWPMN---IKEGESITLAPS-----VGPYPFGIDPIWNPATNELLFLNSFKMKLSIIIGVIHMLFGLILKIINNI 516 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcccccccc---ccCCceeeccCc-----cccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999854210 011112223332 23899999999999999999999999999999999999999999999999
Q ss_pred hcCCchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCChHHHHHHHhhhcCCCCCCCCCcccccCch
Q psy6250 469 HFRKPVNILLEFLPQLIFLVLLFGYMVTLMFMKWIMYAPQNPLLTSPRCAPSVLILFINMMLFKHSIPFPGCEEYMYESQ 548 (778)
Q Consensus 469 ~~~~~~d~~~e~ip~llfl~~lfgYl~~lI~~KW~~~~~~~~~~~~~~~aPSll~~lInm~l~~~~~~~~~~~~~ly~gQ 548 (778)
++|++.|++++++|+++|++|+||||+++|+|||++++.. ++.+|||+++++|||+|++|.. +++||||
T Consensus 517 ~~~~~~d~~~~~~~~~~~~~~l~Gyl~~li~~kw~~~~~~-----~~~~~p~il~~li~m~l~~~~~------~~~~~~q 585 (759)
T PF01496_consen 517 RFKDKIDIFFAFIPQLLFLISLFGYLVFLIIYKWLTPWFA-----DSICAPSILIGLINMFLFPGTV------QPLYPGQ 585 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HcCCcchhhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhh-----cccCCchHHHHHHHhhcCCCCh------hhhccCc
Confidence 9999999999999999999999999999999999999875 2357999999999999999763 7899999
Q ss_pred hHHHHHHHHHHHHHHHHhhccccchhhhhhchhhhhccccccCCCCCCccccCCCccchhhHHHHHhhhhcchhhccCCc
Q psy6250 549 HQVQTVLVLISLACIPVMLLGKPIYLIFFASKNKHKHQQVSNNGDLQGGIELHSNDEHQVQTVLVLISLACIPVMLLGKP 628 (778)
Q Consensus 549 ~~vq~~l~~ia~~~vP~MLl~kPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (778)
..+|.+|+++|++||||||++||++++++ ++++++ ... .. .+ + +.+
T Consensus 586 ~~~~~~l~~~~~~~vp~~l~~~p~~~~~~--~~~~~~--~~~-------~~--~~-~--~~~------------------ 631 (759)
T PF01496_consen 586 STVQVILLLIALISVPWMLLPKPLILKRK--HKKKQE--KED-------LL--EE-E--EEE------------------ 631 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhcc--ccc-------cc--cc-c--ccc------------------
Confidence 99999999999999999999999999862 111100 000 00 00 0 000
Q ss_pred hhhhhhhcccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCChhhhhhhhheeeeccccccccchhHHHHHhH
Q psy6250 629 IYLIFFASKNKHKHQQVSNNGDLQGGIELHSNDEVLPSSPEGPEEEHEEPAEILIHQSIHTIEYVLSTISHTASYLRLWA 708 (778)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~ihq~IhTIEf~Lg~iSnTASYLRLWA 708 (778)
.. . ..++++++++++||++|||.|||||+||||+||||||+||||
T Consensus 632 --------------------------~~--------~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~sy~Rl~a 676 (759)
T PF01496_consen 632 --------------------------SE--------S-QEDEEEHEEFDFGEIFIHQGIETIEFVLGCISNTLSYLRLWA 676 (759)
T ss_dssp ----------------------------------------------------------------SSSTTTTCHHHHHCHH
T ss_pred --------------------------cc--------c-ccccccccchhHHHHHHHHHHHHHHHHHhhhcchHhHHHHHH
Confidence 00 0 111233667899999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccceeeccc
Q psy6250 709 LSLAHAQLSEVLWNMVLKLGLQSESHAGAIMLYISFALWAMFTLAILVMMEGLSAFLHTLRLHWKERVF 777 (778)
Q Consensus 709 LSLAH~qLs~V~~~~~~~~~l~~~~~~g~i~~~~~f~~~a~~T~~iL~~Me~lsafLHaLRLhWVEfq~ 777 (778)
|||||+|||+|+|.|+...+...+|. +++.++++++|+++|.++++||||||||||||||||||||+
T Consensus 677 ~~la~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lRL~~~E~~~ 743 (759)
T PF01496_consen 677 LSLAHAQLSEVFNEMALMLGLSSGGV--PIAGIIGFIIIAILGHAILIGMEGLSAFLHALRLHWVEFFS 743 (759)
T ss_dssp HHCHHHHCCS-----------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHhccccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988876653 67788889999999999999999999999999999999986
No 3
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=100.00 E-value=7.4e-73 Score=667.36 Aligned_cols=401 Identities=22% Similarity=0.305 Sum_probs=307.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhchhhhhhhcccccchHHHhhccccceEeeeeecCccccccccccc
Q psy6250 3 LERTESEILELSQNAINLKSNYLELTELKHVLEKTQTFFHEIWNIFFGGRYIILLMGLFSIYTGLIYNDFFSKSISVFGS 82 (778)
Q Consensus 3 ~~~~e~el~e~~~n~~~L~~~~~~L~E~k~VL~k~~~~~~e~~~~~~~~r~li~~m~~fs~~tG~I~~~~~s~s~~~F~~ 82 (778)
++++++++.++.+..++|+++..++.+.+..|+.-..+ + . +-.. +.....+.+..|.+.++.+.+ ..
T Consensus 95 ~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~~l-d----~--~l~~-~~~~~~~~~~~G~i~~~~~~~----~~- 161 (646)
T PRK05771 95 LEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNF-D----L--DLSL-LLGFKYVSVFVGTVPEDKLEE----LK- 161 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-C----C--CHHH-hCCCCcEEEEEEEecchhhhh----HH-
Confidence 45566666666666666666666666666655543321 0 0 0000 011235778889999888332 00
Q ss_pred cccccccccccccccccccCCCCCCCCCCCcccccccccccccCcccccEEEEEEEeChhhHHHHHHhhccccceecCCC
Q psy6250 83 AWKNNYNLSTIMENRDLILDPATSDYDQIPYPFVKFDYSLLFQGNEIYKTVFVAFFQGEQLKSRVKKVCSGFHASFYPCP 162 (778)
Q Consensus 83 ~wrgn~~~~~~~~~~~~~lDP~~~~~~~~Pypf~~~d~~~~~tg~~~~k~vfii~~~g~~~~~kv~kI~~~f~~~~~~~p 162 (778)
.+. ++. ... .-...++.++++++..++..+++.++|++++++++++|
T Consensus 162 ~~~----------------~~~---------~~~--------~~~~~~~~~~~vvv~~~~~~~~~~~~l~~~~f~~~~~p 208 (646)
T PRK05771 162 LES----------------DVE---------NVE--------YISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELE 208 (646)
T ss_pred hhc----------------cCc---------eEE--------EEEecCCcEEEEEEEEhhhHHHHHHHHHHCCCEEecCC
Confidence 010 000 000 11233466777777777788999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcEEEEEEeeecC
Q psy6250 163 SAHQERTDMVQGVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVMVRKMKAIYHTLNSFNMDVTKKCLIGECWVPVK 242 (778)
Q Consensus 163 ~~~~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~~~l~~w~~~v~k~k~iy~~LN~~~~~~t~~~~i~eGWvP~~ 242 (778)
+ ++.+++.++++++|++++++++++++++++++.+.....+.+|+..++.++..+++++++ ..|+++++++||||++
T Consensus 209 ~-~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~t~~~~~l~GWvP~~ 285 (646)
T PRK05771 209 E-EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKF--LKTDKTFAIEGWVPED 285 (646)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCcEEEEEEEeehh
Confidence 9 889999999999999999999999999999999888888888999999999999999966 4689999999999999
Q ss_pred CHHHHHHHHHccccccCCccceeeecc-CCCCCCCccccCCccchhHHHHHHhhcCCCCCccCCcchhHHHHHHHHHHHh
Q psy6250 243 HLTFVRLTLAEGSKAVGSSIPSFLNVI-ETNEMPPTFNQTNRFTQGFQNLIDSYGIATYRELNPGLYTIVTFPFLFGIMF 321 (778)
Q Consensus 243 ~~~~i~~~L~~~~~~~~~~v~~~~~~~-~~~~~PPT~lknnkft~pFq~Ivd~YGiP~Y~EiDPt~~~~itFPffFG~Mf 321 (778)
+++++++++++.... .+.....++ +++++|||++|||+|++|||.+|+|||+|+|+|+||||++++|||+||||||
T Consensus 286 ~~~~l~~~l~~~~~~---~~~v~~~~~~~~~~~~Pt~l~N~~~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f~lfFGmM~ 362 (646)
T PRK05771 286 RVKKLKELIDKATGG---SAYVEFVEPDEEEEEVPTKLKNPKFIKPFESLTEMYSLPKYNEIDPTPFLAIFFPLFFGMML 362 (646)
T ss_pred HHHHHHHHHHHhcCC---cEEEEEeCCCCcCCCCCEEeeCCchhhhHHHHHHHcCCCCCCCcCCccHHHHHHHHHHHHHH
Confidence 999999999986532 233344455 4668999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHhhhhcccchhhHHhhhhhHHHHHHHhHHHHHHHHHhcccccCccccccccccccCcccc
Q psy6250 322 GDAGHGIILTLFGAFMVIWEQKLMKKKTTNEIWNIFFGGRYIILLMGLFSIYTGLIYNDFFSKSISVFGSAWKNNYNLST 401 (778)
Q Consensus 322 GDvGhGlllll~~l~l~~k~kkl~~~k~~~e~~~~lf~gRyiillmGi~Si~~G~lYgd~FG~~i~iFgs~w~~~~~~~~ 401 (778)
||+|||++++++|+++++|.++. ++. +...++++++||++||+||++||||||.+++.+++.|..
T Consensus 363 gD~GyGLil~l~~~~l~~~~~k~------~~~---~~~~~~il~~~gi~sii~G~lyG~fFG~~~~~~~~~~~~------ 427 (646)
T PRK05771 363 GDAGYGLLLLLIGLLLSFKLKKK------SEG---LKRLLKILIYLGISTIIWGLLTGSFFGFSLPIFLPGGYL------ 427 (646)
T ss_pred HhHHHHHHHHHHHHHHHHhcccc------cHH---HHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccccccc------
Confidence 99999999999999887653221 222 234578999999999999999999999887665544310
Q ss_pred cccCcceeecCCCCCCCCCCccCCCCchhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhh
Q psy6250 402 IMENRDLILDPATSDYDQIPYPFGLDPVWQVAENKIIFLNSYKMKLSIIFGVVHMIFGVTLSVINHVHFRKPVNILLEFL 481 (778)
Q Consensus 402 ~~~~~~l~l~p~~~~~~~~pypfGiDPiW~~a~N~L~FlNS~kMklSIiiGvihm~~G~iL~~~N~i~~~~~~d~~~e~i 481 (778)
+ ..+.+|.|. ..|... .+|++|+++|++||++|++++++|++++|++.+++++.+
T Consensus 428 ----------~----------~~~~~~~~~-~~~~~~----~~l~lsl~iGvi~i~~g~~l~~~~~~~~~~~~~a~~~~~ 482 (646)
T PRK05771 428 ----------E----------LPEGYPSLS-TENDVM----TILIISLLIGVIHLFLGLLLGFINNVRKGDYKDAFLAQL 482 (646)
T ss_pred ----------c----------ccCCccccC-CCccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0 011122222 222221 249999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy6250 482 PQLIFLVLLFGYMV 495 (778)
Q Consensus 482 p~llfl~~lfgYl~ 495 (778)
||++|++|++.++.
T Consensus 483 ~w~l~~~g~~~~~~ 496 (646)
T PRK05771 483 GWLLILLGILLIVL 496 (646)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877653
No 4
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=100.00 E-value=5e-73 Score=665.78 Aligned_cols=448 Identities=27% Similarity=0.438 Sum_probs=378.5
Q ss_pred cccccEEEEEEEeChhhHHHHHHhhccccceecCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 127 NEIYKTVFVAFFQGEQLKSRVKKVCSGFHASFYPCPSAHQERTDMVQGVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHA 206 (778)
Q Consensus 127 ~~~~k~vfii~~~g~~~~~kv~kI~~~f~~~~~~~p~~~~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~~~l~~ 206 (778)
+...+++++++.++++...++.+++++.+++.++.|+.+..+.+.+.++++++++.+.++++++++++++.+..++.+..
T Consensus 186 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~ 265 (660)
T COG1269 186 ENVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLA 265 (660)
T ss_pred hccccceEEEEEecccchHHHHHHHHhCCcEEeeccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568889999999999999999999999999999998777999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccCCcEEEEEEeeecCCHHHHHHHHHccccccCCccceeeeccCCC---CCCCccccCCc
Q psy6250 207 WSVMVRKMKAIYHTLNSFNMDVTKKCLIGECWVPVKHLTFVRLTLAEGSKAVGSSIPSFLNVIETN---EMPPTFNQTNR 283 (778)
Q Consensus 207 w~~~v~k~k~iy~~LN~~~~~~t~~~~i~eGWvP~~~~~~i~~~L~~~~~~~~~~v~~~~~~~~~~---~~PPT~lknnk 283 (778)
|+..+..++.+++.+|.++ .|++++++|||||+++++++++++++.++. ...++..+++ ++|||++|||+
T Consensus 266 ~~~~l~~e~~~~~~~~~~~--~t~~~~~~eGWvP~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~e~~Pt~l~n~~ 338 (660)
T COG1269 266 VREILEIEKALGDVLSKLA--RTEYTLAIEGWVPADEVEKLKKIINRATGG-----AAYFEVSETDEDKEEVPTKLRNPK 338 (660)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccceEEEEEEeccHHHHHHHHHHHHHhcCC-----ceEEEeecCCCccCCCCEeecCCc
Confidence 9999999999999999775 566899999999999999999999997642 2344444444 79999999999
Q ss_pred cchhHHHHHHhhcCCCCCccCCcchhHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhhcccchhhHHhhhhhHHH
Q psy6250 284 FTQGFQNLIDSYGIATYRELNPGLYTIVTFPFLFGIMFGDAGHGIILTLFGAFMVIWEQKLMKKKTTNEIWNIFFGGRYI 363 (778)
Q Consensus 284 ft~pFq~Ivd~YGiP~Y~EiDPt~~~~itFPffFG~MfGDvGhGlllll~~l~l~~k~kkl~~~k~~~e~~~~lf~gRyi 363 (778)
|++|||.+|+|||+|+|+|||||+++++|||+|||+||||+|||++++++|++++++.++. ..+.++.+. ++
T Consensus 339 ~i~~Fe~l~emY~iPkY~EidPt~~~a~~Fp~fFG~M~gD~gyGlll~l~sl~l~~~~~~~-----~~~~~~~l~---~~ 410 (660)
T COG1269 339 FISPFESLTEMYGIPKYGEIDPTPFLALFFPLFFGIMFGDLGYGLLLFLISLLLLRYFKKR-----LPEGLKKLG---KI 410 (660)
T ss_pred ccchHHHHHHHhcCCCCCCcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccc-----cchhHHHHH---HH
Confidence 9999999999999999999999999999999999999999999999999999998776531 123344443 38
Q ss_pred HHHHhHHHHHHHHHhcccccCccccccccccccCcccccccCcceeecCCCCCCCCCCccCCCCchhhhhhhhhhhcccc
Q psy6250 364 ILLMGLFSIYTGLIYNDFFSKSISVFGSAWKNNYNLSTIMENRDLILDPATSDYDQIPYPFGLDPVWQVAENKIIFLNSY 443 (778)
Q Consensus 364 illmGi~Si~~G~lYgd~FG~~i~iFgs~w~~~~~~~~~~~~~~l~l~p~~~~~~~~pypfGiDPiW~~a~N~L~FlNS~ 443 (778)
++++|++|++||++||+|||.... -..+|++++..|+...+.+.+ ++
T Consensus 411 ~~~~~i~t~i~G~l~g~~fG~~~~-------------------------------~~~~p~~~~~~~~~~~~~~~~--~~ 457 (660)
T COG1269 411 LLYLGISTIIWGFLYGEFFGPAVL-------------------------------LSTLPIGLLFVYHGLDEGLLF--SN 457 (660)
T ss_pred HHHHHHHHHHHHHHhccccCCccc-------------------------------cccCCcccccccccccchhhH--HH
Confidence 899999999999999999994110 014678888889888888777 88
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCChHHH
Q psy6250 444 KMKLSIIFGVVHMIFGVTLSVINHVHFRKPVNILLEFLPQLIFLVLLFGYMVTLMFMKWIMYAPQNPLLTSPRCAPSVLI 523 (778)
Q Consensus 444 kMklSIiiGvihm~~G~iL~~~N~i~~~~~~d~~~e~ip~llfl~~lfgYl~~lI~~KW~~~~~~~~~~~~~~~aPSll~ 523 (778)
+|++|+++|++||++|++++++|.++.+++.+ .++|+++++.+++|++.+++.+||+. |.+++
T Consensus 458 ~m~~sl~iG~~hl~~G~~lg~~~~~~~~~~~~---a~~~~~~w~~~~~G~~~~~~~~~~~~--------------~~l~~ 520 (660)
T COG1269 458 ILILSLLIGVLHLSLGLLLGFINRVRSGDIKG---AILPQLLWLLIILGLLLLILGYKWSV--------------PELLG 520 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH---HhhhhHHHHHHHHHHHHHHHHhhhcc--------------cchhh
Confidence 89999999999999999999999999766665 55788888888999999999999984 67888
Q ss_pred HHHHhhhcCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHhhccccchhhhhhchhhhhccccccCCCCCCccccCCC
Q psy6250 524 LFINMMLFKHSIPFPGCEEYMYESQHQVQTVLVLISLACIPVMLLGKPIYLIFFASKNKHKHQQVSNNGDLQGGIELHSN 603 (778)
Q Consensus 524 ~lInm~l~~~~~~~~~~~~~ly~gQ~~vq~~l~~ia~~~vP~MLl~kPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (778)
+.++|+..+|.. -+++++.+|+|
T Consensus 521 ~~~~~~~~~g~~------------------~llvv~~i~~~--------------------------------------- 543 (660)
T COG1269 521 MVGAMFGAFGIL------------------GLLVVGLILVP--------------------------------------- 543 (660)
T ss_pred HHHHHhhhccHH------------------HHHHHHHHHcc---------------------------------------
Confidence 999988876652 14444444444
Q ss_pred ccchhhHHHHHhhhhcchhhccCCchhhhhhhcccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCChhhhhh
Q psy6250 604 DEHQVQTVLVLISLACIPVMLLGKPIYLIFFASKNKHKHQQVSNNGDLQGGIELHSNDEVLPSSPEGPEEEHEEPAEILI 683 (778)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~i 683 (778)
+.+.+
T Consensus 544 ---------------------------------------------------------------------------~~~~~ 548 (660)
T COG1269 544 ---------------------------------------------------------------------------GLVAI 548 (660)
T ss_pred ---------------------------------------------------------------------------hHHHH
Confidence 23356
Q ss_pred hhheeeeccccccccchhHHHHHhHhhcchhHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy6250 684 HQSIHTIEYVLSTISHTASYLRLWALSLAHAQLSEVLWNMVLKLGLQSESHAGAIMLYISFALWAMFTLAILVMMEGLSA 763 (778)
Q Consensus 684 hq~IhTIEf~Lg~iSnTASYLRLWALSLAH~qLs~V~~~~~~~~~l~~~~~~g~i~~~~~f~~~a~~T~~iL~~Me~lsa 763 (778)
||.||++|+|+||+|||.||+|||||||||++++.|+|.|+....-... .|+++.+++|+++-+++ ++|++|++
T Consensus 549 ~~~i~~~~~~~~~~s~i~SY~RL~Al~La~~~ia~~~n~m~~~~~~~~~--~~~i~giii~i~Gh~~n----~~l~il~~ 622 (660)
T COG1269 549 GQGILGFEGVLSLLSDVLSYLRLLALGLAGASIASVVNLMTGLLIGSVP--FGIILGIIILIFGHLLN----IALSILGA 622 (660)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--chHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 7788999999999999999999999999999999999999987654322 23555556655555544 47888999
Q ss_pred HHHhhccceeeccc
Q psy6250 764 FLHTLRLHWKERVF 777 (778)
Q Consensus 764 fLHaLRLhWVEfq~ 777 (778)
|+||||||||||-+
T Consensus 623 ~vH~lRLh~VEffs 636 (660)
T COG1269 623 GVHGLRLHYVEFFS 636 (660)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999964
No 5
>KOG2189|consensus
Probab=98.96 E-value=1.8e-10 Score=133.23 Aligned_cols=94 Identities=53% Similarity=0.935 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhchhhhhhhcccccchHHHhhccccceEeeeeecCccccccccccccccccccccccccccccccCC
Q psy6250 24 YLELTELKHVLEKTQTFFHEIWNIFFGGRYIILLMGLFSIYTGLIYNDFFSKSISVFGSAWKNNYNLSTIMENRDLILDP 103 (778)
Q Consensus 24 ~~~L~E~k~VL~k~~~~~~e~~~~~~~~r~li~~m~~fs~~tG~I~~~~~s~s~~~F~~~wrgn~~~~~~~~~~~~~lDP 103 (778)
+.-|.|.|.--.|.+ +|+++++|+|||+|++||.||+|||+||||+||||.|+|+|.|...+-...+...+. .+-|
T Consensus 427 ~~Vl~Ekkl~~~k~~---~EI~~mfF~GRYIIlLMGlFSiYTGliYND~FSks~niFgS~W~~~~~~~~~~~~e~-~~~p 502 (829)
T KOG2189|consen 427 WMVLNEKKLASQKIG---DEIFNMFFGGRYIILLMGLFSIYTGLIYNDFFSKSMNIFGSSWSNPYNVTAVLCSEA-LLTP 502 (829)
T ss_pred HHHHhcchhhhhhhH---HHHHHHHhcchHHHHHHHHHHHHHhhhhhhhcccccccccCcccCccccchhccccc-cccC
Confidence 444555555444443 588999999999999999999999999999999999999999984433332212222 2225
Q ss_pred CCC-CCCCCCcccccccccc
Q psy6250 104 ATS-DYDQIPYPFVKFDYSL 122 (778)
Q Consensus 104 ~~~-~~~~~Pypf~~~d~~~ 122 (778)
... .++++||||.. |++-
T Consensus 503 ~~~~~~~~gpYPfGv-DPiW 521 (829)
T KOG2189|consen 503 EIGGAKFGGPYPFGV-DPIW 521 (829)
T ss_pred CCCcccccCCCCCcC-Chhh
Confidence 433 35678999998 6643
No 6
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=77.60 E-value=0.73 Score=56.80 Aligned_cols=41 Identities=51% Similarity=1.067 Sum_probs=0.0
Q ss_pred hcccccchHHHhhccccceEeeeeecCcccccccccccccc
Q psy6250 45 WNIFFGGRYIILLMGLFSIYTGLIYNDFFSKSISVFGSAWK 85 (778)
Q Consensus 45 ~~~~~~~r~li~~m~~fs~~tG~I~~~~~s~s~~~F~~~wr 85 (778)
+++.++.++++..||.+|+|+|+||+|.|+.+.+.|++.|.
T Consensus 410 ~~~~~~~~~il~~~gi~si~~G~iyg~~FG~~~~~f~~~~~ 450 (759)
T PF01496_consen 410 FNMLFKLRYILLLMGISSIIFGFIYGSFFGDSLNIFGSGWN 450 (759)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCcchhcCcccc
Confidence 34445688999999999999999999999999999998885
No 7
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=68.11 E-value=24 Score=31.79 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q psy6250 447 LSIIFGVVHMIFGVTLSVINHVHFRKPVNILLEFLPQLIFLVLLFGYMVTLMFMKW 502 (778)
Q Consensus 447 lSIiiGvihm~~G~iL~~~N~i~~~~~~d~~~e~ip~llfl~~lfgYl~~lI~~KW 502 (778)
-.++.|++.+.+..++.+++.-+.++..+-.+..+.-+-|++|+.--+-.+|+--|
T Consensus 13 ~vli~GiiLL~~aCIfAfidfsK~~~~~~~~wRalSii~FI~giil~lG~~i~s~y 68 (92)
T PF05767_consen 13 GVLIGGIILLIAACIFAFIDFSKNTKPTDYTWRALSIICFILGIILTLGIVIFSMY 68 (92)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998888788888888888888877777776556
No 8
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=46.98 E-value=1e+02 Score=25.42 Aligned_cols=46 Identities=9% Similarity=0.320 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 172 VQGVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVMVRKMKAIYHTL 221 (778)
Q Consensus 172 l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~~~l~~w~~~v~k~k~iy~~L 221 (778)
+.++++++..++..+...+++..++- +.++.....+++.-.+|+..
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~----~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEIS----ESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777776665543 33445566777777888753
No 9
>PRK01203 prefoldin subunit alpha; Provisional
Probab=42.29 E-value=3.3e+02 Score=26.43 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 171 MVQGVKTRLEDLNMVLNQTRDHRQRVLVSVA 201 (778)
Q Consensus 171 ~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~ 201 (778)
+++.+++++++++..+.+..+.++++-+.++
T Consensus 88 kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~ 118 (130)
T PRK01203 88 TIERLKENLEDLKDSIQKLNDQRKTLVDQYN 118 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888777766555443
No 10
>PF15192 TMEM213: TMEM213 family
Probab=38.07 E-value=39 Score=29.32 Aligned_cols=25 Identities=36% Similarity=0.670 Sum_probs=20.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhH
Q psy6250 735 AGAIMLYISFALWAMFTLAILVMMEGL 761 (778)
Q Consensus 735 ~g~i~~~~~f~~~a~~T~~iL~~Me~l 761 (778)
.|.|+..+++.+|++ |+ ||+|||-|
T Consensus 45 yGWIAAAVGWSLwFL-TL-ILLCvdKl 69 (82)
T PF15192_consen 45 YGWIAAAVGWSLWFL-TL-ILLCVDKL 69 (82)
T ss_pred hhHHHHHHhHHHHHH-HH-HHHHHHHH
Confidence 467888888998886 77 89999865
No 11
>KOG0728|consensus
Probab=37.25 E-value=3.9e+02 Score=29.03 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=49.1
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhchhhhhhhcccccchHH---HhhccccceEeeeeecCc
Q psy6250 2 HLERTESEILELSQNAINLKSNYLELTELKHVLEKTQTFFHEIWNIFFGGRYI---ILLMGLFSIYTGLIYNDF 72 (778)
Q Consensus 2 ~~~~~e~el~e~~~n~~~L~~~~~~L~E~k~VL~k~~~~~~e~~~~~~~~r~l---i~~m~~fs~~tG~I~~~~ 72 (778)
++++++.++.+-.+|..+|..+.++|.-.--.|+..-+.++| .|+|+ +..|+.-.+...+-..++
T Consensus 25 ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe------~gsyvgev~k~m~k~kVLVKvhpegK 92 (404)
T KOG0728|consen 25 KIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQE------PGSYVGEVVKAMGKKKVLVKVHPEGK 92 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc------CcchHHHHHHhcCcceEEEEEcCCCc
Confidence 578899999999999999999999998887778776666655 34443 335776666666666666
No 12
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.05 E-value=2.5e+02 Score=26.78 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy6250 175 VKTRLEDLNMVLNQTRDHRQRVLVSVA---KELHAWSVMVRKMKAIYHT 220 (778)
Q Consensus 175 l~~~i~~l~~~l~~~~~~~~~~l~~~~---~~l~~w~~~v~k~k~iy~~ 220 (778)
...++.+++..+++++.+....|+-.. +.+++.+..+...|..|+.
T Consensus 66 ~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 66 LKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555554433 3455677777777777764
No 13
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=32.55 E-value=93 Score=34.54 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=34.3
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHhhhhcccchh-hHHhhhhhHHHHHHHhHHHHHHHHHhcc
Q psy6250 319 IMFGDAGHGIILTLFGAFMVIWEQKLMKKKTTNE-IWNIFFGGRYIILLMGLFSIYTGLIYND 380 (778)
Q Consensus 319 ~MfGDvGhGlllll~~l~l~~k~kkl~~~k~~~e-~~~~lf~gRyiillmGi~Si~~G~lYgd 380 (778)
+=+||+.+-++.+++..++++..++..+++ ... ..+.+ -.+..+.-+|.+.||+-|..
T Consensus 23 FSvgdi~~~~~il~ll~~~~~~~~~~~k~~-~~~~l~~~~---~~~~~~y~~F~~~WGlNY~R 81 (318)
T PF12725_consen 23 FSVGDILYYLLILFLLYYLIRLIRKIFKKK-KRFKLLNIL---FFLSVLYFLFYLLWGLNYYR 81 (318)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHH---HHHHHHHHHHHHHhhhhcCC
Confidence 457999998777776666665544433211 111 12222 23566677888888888753
No 14
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=32.43 E-value=4.3e+02 Score=26.33 Aligned_cols=80 Identities=9% Similarity=0.127 Sum_probs=50.5
Q ss_pred hhhHHHHHHhhccccceecCCCC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q psy6250 141 EQLKSRVKKVCSGFHASFYPCPS---AHQERTDMVQGVKTRLEDLNMVLNQTRDHRQRVLVSVA----KELHAWSVMVRK 213 (778)
Q Consensus 141 ~~~~~kv~kI~~~f~~~~~~~p~---~~~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~----~~l~~w~~~v~k 213 (778)
+++.++..+|-+.++--..+.-. .-+..++.+++++++++++.+..+...++..-+..... ..++....+|++
T Consensus 47 d~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~e 126 (157)
T COG3352 47 DAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNE 126 (157)
T ss_pred HHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHH
Confidence 34556666666666654444432 24556777788888888888877777666544433322 235667788888
Q ss_pred HHHHHHH
Q psy6250 214 MKAIYHT 220 (778)
Q Consensus 214 ~k~iy~~ 220 (778)
++.+|..
T Consensus 127 l~~i~em 133 (157)
T COG3352 127 LKMIVEM 133 (157)
T ss_pred HHHHHHH
Confidence 8888874
No 15
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=32.39 E-value=3.4e+02 Score=23.94 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 170 DMVQGVKTRLEDLNMVLNQTRDHRQRVLVS 199 (778)
Q Consensus 170 ~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~ 199 (778)
+.++++++.++++++.+..+.++..+++..
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~ 55 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHN 55 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 16
>PF07666 MpPF26: M penetrans paralogue family 26; InterPro: IPR011655 These proteins include those ascribed to M penetrans paralogue family 26 in [].
Probab=32.07 E-value=2.1e+02 Score=27.78 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=45.2
Q ss_pred cCCCCCccCCcchhHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhhcccchhhHHhhhhhHHHHHHHhHHH-HHH
Q psy6250 296 GIATYRELNPGLYTIVTFPFLFGIMFGDAGHGIILTLFGAFMVIWEQKLMKKKTTNEIWNIFFGGRYIILLMGLFS-IYT 374 (778)
Q Consensus 296 GiP~Y~EiDPt~~~~itFPffFG~MfGDvGhGlllll~~l~l~~k~kkl~~~k~~~e~~~~lf~gRyiillmGi~S-i~~ 374 (778)
-.+++-|-++++..+..-....-+|+-|+ .+++.++++..+..|.++++++....+-.+. ..++..+|++= -.+
T Consensus 42 ~~~~~~~~~~~~~~~~l~igil~i~~~~i-~~i~~~Il~Ivl~iKis~~k~~~~~~~k~~~----~~iL~IIGi~i~~i~ 116 (130)
T PF07666_consen 42 NTSNNYEEESSMSIGNLVIGILLIIFSGI-FYIVNFILGIVLIIKISSLKNKHPEFKKVTV----HKILLIIGIFISPIC 116 (130)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCcccccchh----hhhhhhhhhHHhhHH
Confidence 34444444555444444444555666666 8999999999998887766542222221111 34677777665 555
Q ss_pred HHHh
Q psy6250 375 GLIY 378 (778)
Q Consensus 375 G~lY 378 (778)
+.++
T Consensus 117 ~ii~ 120 (130)
T PF07666_consen 117 SIID 120 (130)
T ss_pred HHHH
Confidence 5553
No 17
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.89 E-value=58 Score=31.20 Aligned_cols=13 Identities=38% Similarity=0.805 Sum_probs=10.2
Q ss_pred HHHHHHHHhhchh
Q psy6250 313 FPFLFGIMFGDAG 325 (778)
Q Consensus 313 FPffFG~MfGDvG 325 (778)
.-+.||+|.|=+|
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 5678899998776
No 18
>KOG4551|consensus
Probab=27.54 E-value=86 Score=31.28 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=21.8
Q ss_pred eeccccccccchhHHHHHhHhhcchhHHHHHHH
Q psy6250 689 TIEYVLSTISHTASYLRLWALSLAHAQLSEVLW 721 (778)
Q Consensus 689 TIEf~Lg~iSnTASYLRLWALSLAH~qLs~V~~ 721 (778)
.|||++|| +|+|+|.|--+---++.+.|
T Consensus 26 ~ief~~~t-----~~~s~~~l~f~lcf~~~~~y 53 (184)
T KOG4551|consen 26 IIEFSSGT-----GYASRWGLGFFLCFLASSMY 53 (184)
T ss_pred eEEeecCC-----chhcccchhhHHHHHHHHHh
Confidence 69999997 79999998866665555554
No 19
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=27.39 E-value=3.9e+02 Score=25.93 Aligned_cols=52 Identities=12% Similarity=0.284 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q psy6250 165 HQERTDMVQGVKTRLEDLNMVLNQTRDHRQRVLVSVA----KELHAWSVMVRKMKA 216 (778)
Q Consensus 165 ~~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~----~~l~~w~~~v~k~k~ 216 (778)
+....+..+++.+++..++..+.+++-+.++.+.+.. ..+...+.++.++++
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~ 70 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQ 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 3445667788888899999999998888888777655 344444444444433
No 20
>PHA02898 virion envelope protein; Provisional
Probab=26.52 E-value=2.6e+02 Score=25.35 Aligned_cols=56 Identities=16% Similarity=0.357 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q psy6250 447 LSIIFGVVHMIFGVTLSVINHVHFRKPVNILLEFLPQLIFLVLLFGYMVTLMFMKW 502 (778)
Q Consensus 447 lSIiiGvihm~~G~iL~~~N~i~~~~~~d~~~e~ip~llfl~~lfgYl~~lI~~KW 502 (778)
-.++.|++.+..+.+..++..-+.++.-|-.+..+.-+-|++|+.--+-.+++--|
T Consensus 13 ~vli~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii~FIlgivl~lG~~ifs~y 68 (92)
T PHA02898 13 YVVAFGIILLIVACICAYIELSKSEKPADSALRSISIISFILAIILILGIIFFKGY 68 (92)
T ss_pred hHHHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999988887655555666666676666554444444334
No 21
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=26.13 E-value=2.1e+02 Score=30.91 Aligned_cols=64 Identities=20% Similarity=0.384 Sum_probs=38.9
Q ss_pred hhhHHHHHHhhccccceecCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 141 EQLKSRVKKVCSGFHASFYPCPSAHQERTDMVQGVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVM 210 (778)
Q Consensus 141 ~~~~~kv~kI~~~f~~~~~~~p~~~~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~~~l~~w~~~ 210 (778)
..++.+.++.|...|..- .....-+.+.+.++.+++++++.+-.+ +.++++..+.+.++.|...
T Consensus 55 ~~lk~~A~r~~~~~G~rF---lgG~aVP~~~~~~l~~~L~~i~~eF~~---~k~~Fl~~Yd~~i~~w~~~ 118 (257)
T PF11348_consen 55 SKLKKRAERLCLKVGVRF---LGGYAVPEDKAEELAEELEDIKTEFEQ---EKQDFLANYDQAIEEWIDR 118 (257)
T ss_pred HHHHHHHHHHHHHcCCcc---cceeEcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 478899999998877765 233344455566666666666664333 3344555555555555443
No 22
>PRK10692 hypothetical protein; Provisional
Probab=25.93 E-value=2.2e+02 Score=25.72 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhhhHHHHHHHHHHH
Q psy6250 449 IIFGVVHMIFGVTLSVINHVHFRKPVNILLEFLPQLIFLVLLFGY 493 (778)
Q Consensus 449 IiiGvihm~~G~iL~~~N~i~~~~~~d~~~e~ip~llfl~~lfgY 493 (778)
..+|.+-|..|+..++.|++..=+ +||++.-.++|+-
T Consensus 14 MglGmv~Mv~gigysi~~~i~~L~--------Lp~~~~~gal~~I 50 (92)
T PRK10692 14 MGLGLVVMVVGVGYSILNQLPQLN--------LPQFFAHGALLSI 50 (92)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC--------chHHHHhhHHHHH
Confidence 467899999999999999987766 5666654444443
No 23
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=25.72 E-value=4.2e+02 Score=29.00 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=34.6
Q ss_pred CccCCCCch--------hhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhh
Q psy6250 421 PYPFGLDPV--------WQVAENKIIFLNSYKMKLSIIFGVVHMIFGVTLSVINHVHFRKPVNIL 477 (778)
Q Consensus 421 pypfGiDPi--------W~~a~N~L~FlNS~kMklSIiiGvihm~~G~iL~~~N~i~~~~~~d~~ 477 (778)
.|+||-|.. |.++.+.| .++++.+.+-+.+|.+++.+-..+.+. .|-+
T Consensus 65 ~~~lGTD~~GRDi~srli~G~r~SL--------~I~~~~~~~~~~iG~~lG~iaGy~gG~-vD~i 120 (289)
T COG1173 65 AHWLGTDNLGRDILSRLLYGARISL--------LIGLLAVLISLVIGTLLGLLAGYFGGW-VDRV 120 (289)
T ss_pred CCCCcCCCcchHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHcCch-HHHH
Confidence 477887763 55666654 688888888999999999888755544 6644
No 24
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.79 E-value=1.7e+02 Score=23.14 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy6250 5 RTESEILELSQNAINLKSNYLELTELKHVLEK 36 (778)
Q Consensus 5 ~~e~el~e~~~n~~~L~~~~~~L~E~k~VL~k 36 (778)
++|.+-.-+..++++|++++..|...+.-|..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~a 33 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRA 33 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888889999999999988887776664
No 25
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=24.64 E-value=3.6e+02 Score=32.18 Aligned_cols=56 Identities=9% Similarity=0.158 Sum_probs=35.7
Q ss_pred hhhHHHHHHhhccccceecCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 141 EQLKSRVKKVCSGFHASFYPCPSAHQERTDMVQGVKTRLEDLNMVLNQTRDHRQRV 196 (778)
Q Consensus 141 ~~~~~kv~kI~~~f~~~~~~~p~~~~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~ 196 (778)
+++..||.+|.+.++-.--.+.....+..+.+.+++++.+|....+-....++--+
T Consensus 374 d~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVl 429 (550)
T PF00509_consen 374 DQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVL 429 (550)
T ss_dssp HHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHH
Confidence 46778888888877643334554455666667777777777666665555554333
No 26
>COG2383 Uncharacterized conserved protein [Function unknown]
Probab=24.63 E-value=1.2e+02 Score=28.07 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.3
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHH
Q psy6250 317 FGIMFGDAGHGIILTLFGAFMVIW 340 (778)
Q Consensus 317 FG~MfGDvGhGlllll~~l~l~~k 340 (778)
|.=|.+|+|-|.++-.++-|..+|
T Consensus 15 f~g~l~dlG~G~ilGf~~GyAlkk 38 (109)
T COG2383 15 FTGILPDLGIGGILGFAAGYALKK 38 (109)
T ss_pred hhhccccccchhHHHHHHHHHHHH
Confidence 788999999999988888787654
No 27
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.49 E-value=1.4e+02 Score=28.00 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhchhh
Q psy6250 2 HLERTESEILELSQNAINLKSNYLELTELKHVLEKTQTFF 41 (778)
Q Consensus 2 ~~~~~e~el~e~~~n~~~L~~~~~~L~E~k~VL~k~~~~~ 41 (778)
.+.++|+++.++.+..++|+++..+|.|--+-|+.-..-+
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999877777654433
No 28
>KOG2264|consensus
Probab=23.92 E-value=1.3e+02 Score=35.81 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=29.2
Q ss_pred HHHHHHhhccccceecCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 144 KSRVKKVCSGFHASFYPCPSAHQERTDMVQGVKTRLEDLNMVLNQTRDHRQRVL 197 (778)
Q Consensus 144 ~~kv~kI~~~f~~~~~~~p~~~~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l 197 (778)
-.+..+|.++...+.-+....-++....+++++.+|+++++.|.+.+.++.++.
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345666666655554433322333444466666666666666666655554443
No 29
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.82 E-value=9.3e+02 Score=27.44 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhh
Q psy6250 445 MKLSIIFGVVHMIFGVTLSVINHVHFRKPVNILLEF 480 (778)
Q Consensus 445 MklSIiiGvihm~~G~iL~~~N~i~~~~~~d~~~e~ 480 (778)
+|++++.++.-.++-.-++-+...-..++..++..+
T Consensus 151 lKi~~v~~v~~~~l~~~~~~l~~l~~~~~~~~~~~~ 186 (363)
T COG1377 151 LKIVLVGLVAYFVLKNHLSELLSLAGQSPVAALSIF 186 (363)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHH
Confidence 477777777777766666666666667776655443
No 30
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.86 E-value=5.3e+02 Score=22.70 Aligned_cols=53 Identities=9% Similarity=0.201 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 167 ERTDMVQGVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVMVRKMKAIYH 219 (778)
Q Consensus 167 ~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~~~l~~w~~~v~k~k~iy~ 219 (778)
+.++.++.++++++++.++..++-++-+++++.+....+......+..+.+-+
T Consensus 30 ~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~ 82 (90)
T PF06103_consen 30 EVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGE 82 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44556667777777777777777766666666665544444333333333333
No 31
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.85 E-value=4.2e+02 Score=28.98 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHh
Q psy6250 170 DMVQGVKTRLEDLNMVLNQTRDHRQRVLVSVAK----------ELHAWSVMVRKMKAIYHTLN 222 (778)
Q Consensus 170 ~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~~----------~l~~w~~~v~k~k~iy~~LN 222 (778)
-++++-++++.|-+.+|.+++.++.+.-+.+.+ .|.+-+..++.+|.+.+|+.
T Consensus 75 akLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 75 AKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666677766666554443322 13445666777777777766
No 32
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=22.03 E-value=1.8e+02 Score=23.14 Aligned_cols=28 Identities=18% Similarity=0.434 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 172 VQGVKTRLEDLNMVLNQTRDHRQRVLVS 199 (778)
Q Consensus 172 l~~l~~~i~~l~~~l~~~~~~~~~~l~~ 199 (778)
...++++++++...|.+++++++.+...
T Consensus 14 ~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 14 YDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3446677777777777777776665543
No 33
>PRK15406 oligopeptide ABC transporter permease OppC; Provisional
Probab=21.49 E-value=3.7e+02 Score=29.51 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=36.8
Q ss_pred CccCCCCch--------hhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhh
Q psy6250 421 PYPFGLDPV--------WQVAENKIIFLNSYKMKLSIIFGVVHMIFGVTLSVINHVHFRKPVNILLEFL 481 (778)
Q Consensus 421 pypfGiDPi--------W~~a~N~L~FlNS~kMklSIiiGvihm~~G~iL~~~N~i~~~~~~d~~~e~i 481 (778)
.||||-|.. ++++.+.+ .++++-.++-+.+|+.++.+-..+ +.+.|-+...+
T Consensus 81 ~h~lGTD~~GrDv~sr~l~G~r~SL--------~i~l~a~~l~~~iGi~lG~~ag~~-gg~~D~~l~~~ 140 (302)
T PRK15406 81 GHYFGTDSSGRDLLVRVAIGGRISL--------MVGVAAALVAVVVGTLYGSLSGYL-GGKVDSVMMRL 140 (302)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHH
Confidence 377888763 35555554 677788888889999999998876 67777554433
No 34
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=20.25 E-value=3e+02 Score=24.75 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhhhHHHHHHHHHH
Q psy6250 449 IIFGVVHMIFGVTLSVINHVHFRKPVNILLEFLPQLIFLVLLFG 492 (778)
Q Consensus 449 IiiGvihm~~G~iL~~~N~i~~~~~~d~~~e~ip~llfl~~lfg 492 (778)
..+|.+-|..|+..++.|++..=+ +||++.-.++++
T Consensus 14 MglGmv~Mv~gigysi~~~~~~L~--------Lp~~~~~gal~~ 49 (89)
T PF10762_consen 14 MGLGMVVMVGGIGYSILSQIPQLG--------LPQFLAHGALFS 49 (89)
T ss_pred HHHhHHHHHHhHHHHHHHhcccCC--------CcHHHHhhHHHH
Confidence 467889999999999999987766 556655444443
Done!