Query psy6250
Match_columns 778
No_of_seqs 274 out of 1039
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 21:35:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrk_A V-type ATPase 116 kDa s 100.0 6.9E-32 2.3E-36 296.3 18.9 248 3-304 101-357 (357)
2 2nvj_A 25MER peptide from vacu 99.7 5.5E-19 1.9E-23 116.4 0.2 26 691-716 1-26 (26)
3 2jtw_A Transmembrane helix 7 o 99.4 8E-14 2.7E-18 91.3 1.9 21 697-717 2-22 (26)
4 2akf_A Coronin-1A; coiled coil 61.6 9.9 0.00034 26.0 3.7 27 4-30 2-28 (32)
5 3onj_A T-snare VTI1; helix, HA 49.8 1.2E+02 0.0043 26.2 10.2 55 165-219 29-90 (97)
6 3rrk_A V-type ATPase 116 kDa s 48.6 88 0.003 33.2 10.9 142 141-301 66-214 (357)
7 2qyw_A Vesicle transport throu 36.8 71 0.0024 28.1 6.5 52 165-216 44-99 (102)
8 2yko_A LINE-1 ORF1P; RNA-bindi 36.3 1.2E+02 0.0041 30.8 8.8 63 174-244 3-65 (233)
9 3ghg_A Fibrinogen alpha chain; 30.9 69 0.0024 36.1 6.5 76 174-256 114-190 (562)
10 2pnv_A Small conductance calci 29.8 1.2E+02 0.0039 22.8 5.5 31 168-198 7-37 (43)
11 1gk6_A Vimentin; intermediate 27.6 1.9E+02 0.0063 22.9 6.9 47 174-221 4-50 (59)
12 2xv5_A Lamin-A/C; structural p 26.6 2.8E+02 0.0094 23.0 8.9 49 172-221 7-55 (74)
13 2l5g_B Putative uncharacterize 24.1 2.2E+02 0.0076 21.2 6.0 30 167-196 6-35 (42)
14 1deq_A Fibrinogen (alpha chain 22.5 3.2E+02 0.011 29.7 9.5 82 168-256 111-193 (390)
15 1m1j_A Fibrinogen alpha subuni 22.1 6.6E+02 0.023 27.9 12.0 51 203-256 140-191 (491)
16 3twe_A Alpha4H; unknown functi 21.9 1.1E+02 0.0037 20.0 3.5 22 3-24 3-24 (27)
17 2oqq_A Transcription factor HY 20.9 2.5E+02 0.0085 20.9 5.7 35 3-37 5-39 (42)
18 1x8y_A Lamin A/C; structural p 20.5 3.9E+02 0.013 22.6 9.3 51 170-221 28-78 (86)
19 1vcs_A Vesicle transport throu 20.4 1.5E+02 0.0051 25.9 5.6 54 166-219 34-91 (102)
No 1
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=99.97 E-value=6.9e-32 Score=296.32 Aligned_cols=248 Identities=13% Similarity=0.081 Sum_probs=172.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhchhhhhhhcccccchHHHhhccccceEeeee-ecCcccccccccc
Q psy6250 3 LERTESEILELSQNAINLKSNYLELTELKHVLEKTQTFFHEIWNIFFGGRYIILLMGLFSIYTGLI-YNDFFSKSISVFG 81 (778)
Q Consensus 3 ~~~~e~el~e~~~n~~~L~~~~~~L~E~k~VL~k~~~~~~e~~~~~~~~r~li~~m~~fs~~tG~I-~~~~~s~s~~~F~ 81 (778)
+++++++++++.++.++|+++..+|.+.+.+++....|-.. .+ ....|++++|+| .++. ...|+
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~~-----ld------~~~~~g~~~g~ip~~~~----~~~~~ 165 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHG-----LD------ESPRLGVIPFLVAKPEE----LEAVR 165 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----TT------TCTTEEEEEEEESCHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcc-----CC------ccceeeeeeEEecChhh----HHHHH
Confidence 67888999999999999999999999998888876654311 11 234789999999 7888 88888
Q ss_pred -cccc--ccccccccccccccccCCCCCCCCCCCcccccccccccccCcccccEEEEEEEeChhhHHHHHHhhcccccee
Q psy6250 82 -SAWK--NNYNLSTIMENRDLILDPATSDYDQIPYPFVKFDYSLLFQGNEIYKTVFVAFFQGEQLKSRVKKVCSGFHASF 158 (778)
Q Consensus 82 -~~wr--gn~~~~~~~~~~~~~lDP~~~~~~~~Pypf~~~d~~~~~tg~~~~k~vfii~~~g~~~~~kv~kI~~~f~~~~ 158 (778)
.+|+ ..+++.. .++...+++|+++++ +...++|++||+++|++.
T Consensus 166 ~~l~~~~~~~~~~~--------------------------------~~~~~~~~~~vv~~~-~~~~~~v~~il~s~~f~~ 212 (357)
T 3rrk_A 166 KALQEALADRFVLE--------------------------------AEPLENQLAALVVVK-RSELEAARSSLSRLGLAE 212 (357)
T ss_dssp HHHHHHHTTSCEEE--------------------------------EEECSSSEEEEEEEE-GGGHHHHHHHHHTTTCCB
T ss_pred HHHHHhcCCeEEEE--------------------------------eecCCCcEEEEEEEE-HHHHHHHHHHHHHCCCee
Confidence 8886 2222111 233345777877775 567889999999999999
Q ss_pred cCCCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcEEEEE
Q psy6250 159 YPCPSAHQ--ERTDMVQGVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVMVRKMKAIYHTLNSFNMDVTKKCLIGE 236 (778)
Q Consensus 159 ~~~p~~~~--~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~~~l~~w~~~v~k~k~iy~~LN~~~~~~t~~~~i~e 236 (778)
+++|+..+ .+.+.++++++|+++++++++++++++.++.......+..|...+++++++|+++|++ +.|++|++++
T Consensus 213 ~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~ 290 (357)
T 3rrk_A 213 LRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADM--AAGKYGAALM 290 (357)
T ss_dssp CCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCSEEEE
T ss_pred ccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccCcEEEEE
Confidence 99998777 8999999999999999999999999999999998899999999999999999999966 5789999999
Q ss_pred EeeecCCHHHHHHHHHccccccCCccceeeeccCCC---CCCCccccCCccchhHHHHHHhhcCCCCCccC
Q psy6250 237 CWVPVKHLTFVRLTLAEGSKAVGSSIPSFLNVIETN---EMPPTFNQTNRFTQGFQNLIDSYGIATYRELN 304 (778)
Q Consensus 237 GWvP~~~~~~i~~~L~~~~~~~~~~v~~~~~~~~~~---~~PPT~lknnkft~pFq~Ivd~YGiP~Y~EiD 304 (778)
||||++++++++++|++ ++ ..+...+.+++++ ++|||+++||+|++|||.||+|||+|+|+|+|
T Consensus 291 gWvp~~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~~fe~iv~~Yg~p~Y~EiD 357 (357)
T 3rrk_A 291 GWVPQKAKGKVEEALGR-LR---DQIVYTFEPVDEHHESHQVPVTLENPAWAKPFELLHGFLNTPAYGSHD 357 (357)
T ss_dssp EEECTTTHHHHHHTCCS-SC---EEEEC-------------------------------------------
T ss_pred EEeeHHHHHHHHHHHHh-cC---CceEEEEecCCccccCCCcCEeccCCchhhHHHHHHHhcCCCCCCCCC
Confidence 99999999999999998 42 2456667777666 58999999999999999999999999999998
No 2
>2nvj_A 25MER peptide from vacuolar ATP synthase subunit A, vacuolar isoform; ALFA helix, 3,10 helix, PI helix, hydrolase; NMR {Synthetic}
Probab=99.71 E-value=5.5e-19 Score=116.39 Aligned_cols=26 Identities=77% Similarity=1.177 Sum_probs=24.6
Q ss_pred ccccccccchhHHHHHhHhhcchhHH
Q psy6250 691 EYVLSTISHTASYLRLWALSLAHAQL 716 (778)
Q Consensus 691 Ef~Lg~iSnTASYLRLWALSLAH~qL 716 (778)
|||||||||||||||||||||||+||
T Consensus 1 e~~l~~is~tasylRlwaLsLah~~l 26 (26)
T 2nvj_A 1 EFCLNCVSHTASYLRLWALSLAHAQX 26 (26)
T ss_dssp CCSSSTTTTTCHHHHGGGSCSSCCC-
T ss_pred CeEEEEeCCchHHHHHHhhhcccccC
Confidence 89999999999999999999999986
No 3
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=99.39 E-value=8e-14 Score=91.30 Aligned_cols=21 Identities=95% Similarity=1.271 Sum_probs=20.5
Q ss_pred ccchhHHHHHhHhhcchhHHH
Q psy6250 697 ISHTASYLRLWALSLAHAQLS 717 (778)
Q Consensus 697 iSnTASYLRLWALSLAH~qLs 717 (778)
|||||||||||||||||+|+|
T Consensus 2 ~s~tasylRlwaLsLaH~~ls 22 (26)
T 2jtw_A 2 KSHTASYLRLWALSLAHAQLS 22 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHhhhhHHHHh
Confidence 899999999999999999998
No 4
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=61.60 E-value=9.9 Score=26.01 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy6250 4 ERTESEILELSQNAINLKSNYLELTEL 30 (778)
Q Consensus 4 ~~~e~el~e~~~n~~~L~~~~~~L~E~ 30 (778)
.++|++++.++.-.+.|+++...|.|-
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999988764
No 5
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=49.75 E-value=1.2e+02 Score=26.23 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHH-HHHHHH
Q psy6250 165 HQERTDMVQGVKTRLEDLNMVLNQTRDHRQRV--LV----SVAKELHAWSVMVRK-MKAIYH 219 (778)
Q Consensus 165 ~~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~--l~----~~~~~l~~w~~~v~k-~k~iy~ 219 (778)
.++++..+.++++.+++++..|.+++-+.+.+ =. .....++.|+..+.+ .|.-+.
T Consensus 29 ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk 90 (97)
T 3onj_A 29 LSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQ 90 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999888776 21 122345666666666 555443
No 6
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=48.58 E-value=88 Score=33.17 Aligned_cols=142 Identities=16% Similarity=0.140 Sum_probs=70.9
Q ss_pred hhhHHHHHHhhccccceec----CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q psy6250 141 EQLKSRVKKVCSGFHASFY----PCPSAHQERTDMVQGVKTRLEDLNMVLNQTRDHRQRVLVSV--AKELHAWSVMVRKM 214 (778)
Q Consensus 141 ~~~~~kv~kI~~~f~~~~~----~~p~~~~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~--~~~l~~w~~~v~k~ 214 (778)
++...+++.+.+.++...- +.+.+..+..+.+.++.+++.++++.++++++++.++.... .+.+..|..
T Consensus 66 ~~~~~k~~~~~~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~----- 140 (357)
T 3rrk_A 66 EAVVSQAEQSLTVVGLATVPSSKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAH----- 140 (357)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhc-----
Confidence 3456677777766653221 11111223344455666666666666666655554433220 112222210
Q ss_pred HHHHHHHhccccccCCcEEEEEEee-ecCCHHHHHHHHHccccccCCccceeeeccCCCCCCCccccCCccchhHHHHHH
Q psy6250 215 KAIYHTLNSFNMDVTKKCLIGECWV-PVKHLTFVRLTLAEGSKAVGSSIPSFLNVIETNEMPPTFNQTNRFTQGFQNLID 293 (778)
Q Consensus 215 k~iy~~LN~~~~~~t~~~~i~eGWv-P~~~~~~i~~~L~~~~~~~~~~v~~~~~~~~~~~~PPT~lknnkft~pFq~Ivd 293 (778)
+++.+..+-++-|-| |.+..++++++|.+.+.. ..+ ..+... .....=.++-......-...|.+
T Consensus 141 ----------~ld~~~~~g~~~g~ip~~~~~~~~~~~l~~~~~~--~~~-~~~~~~-~~~~~~vv~~~~~~~~~v~~il~ 206 (357)
T 3rrk_A 141 ----------GLDESPRLGVIPFLVAKPEELEAVRKALQEALAD--RFV-LEAEPL-ENQLAALVVVKRSELEAARSSLS 206 (357)
T ss_dssp ----------TTTTCTTEEEEEEEESCHHHHHHHHHHHHHHHTT--SCE-EEEEEC-SSSEEEEEEEEGGGHHHHHHHHH
T ss_pred ----------cCCccceeeeeeEEecChhhHHHHHHHHHHhcCC--eEE-EEeecC-CCcEEEEEEEEHHHHHHHHHHHH
Confidence 122345566677899 688899999999876432 111 111111 11111111222334456778888
Q ss_pred hhcCCCCC
Q psy6250 294 SYGIATYR 301 (778)
Q Consensus 294 ~YGiP~Y~ 301 (778)
.+|.-+|.
T Consensus 207 s~~f~~~~ 214 (357)
T 3rrk_A 207 RLGLAELR 214 (357)
T ss_dssp TTTCCBCC
T ss_pred HCCCeecc
Confidence 88877664
No 7
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=36.78 E-value=71 Score=28.11 Aligned_cols=52 Identities=12% Similarity=0.242 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy6250 165 HQERTDMVQGVKTRLEDLNMVLNQTRDHRQRVL----VSVAKELHAWSVMVRKMKA 216 (778)
Q Consensus 165 ~~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l----~~~~~~l~~w~~~v~k~k~ 216 (778)
.+++++.+.++++.+++.+..|++.+-+.+.+= ......++.|+..+.+.|.
T Consensus 44 ~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 44 TEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999999999999999987765432 1122335556666555443
No 8
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=36.28 E-value=1.2e+02 Score=30.82 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcEEEEEEeeecCCH
Q psy6250 174 GVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVMVRKMKAIYHTLNSFNMDVTKKCLIGECWVPVKHL 244 (778)
Q Consensus 174 ~l~~~i~~l~~~l~~~~~~~~~~l~~~~~~l~~w~~~v~k~k~iy~~LN~~~~~~t~~~~i~eGWvP~~~~ 244 (778)
++++|++++++.++.+++.+.++.++....-...+..-.+...+.+....++ ..+-| ||+.+.
T Consensus 3 ~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~N-------IRIiG-VPEgee 65 (233)
T 2yko_A 3 SLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPN-------LRLIG-VPESDV 65 (233)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE-------EEEES-CCCCTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------eeEee-cCCCcc
Confidence 4455555555555555555554443332211111111223334444433332 44556 898654
No 9
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.95 E-value=69 Score=36.14 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccccCCcEEEEEEeeecCCHHHHHHHHH
Q psy6250 174 GVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVMVRKM-KAIYHTLNSFNMDVTKKCLIGECWVPVKHLTFVRLTLA 252 (778)
Q Consensus 174 ~l~~~i~~l~~~l~~~~~~~~~~l~~~~~~l~~w~~~v~k~-k~iy~~LN~~~~~~t~~~~i~eGWvP~~~~~~i~~~L~ 252 (778)
+|+++|+.|+.++......+ ++|+ ..|+..+.+++|+ .+|-..+..|+...++.. +-=|..++.+.+|+.|+
T Consensus 114 ELRRrIqyLKekVdnQlsnI-rvLQ---snLedq~~kIQRLEvDIdiqirsCKgsCsr~~---~~~vd~~sY~~~QKQLe 186 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHI-QLLQ---KNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL---AREVDLKDYEDQQKQLE 186 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCC---CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHhccccccchh---eeecchHHHHHHHHHHH
Confidence 45555555555554444222 2232 3445555555553 445555666765444433 22266677788999998
Q ss_pred cccc
Q psy6250 253 EGSK 256 (778)
Q Consensus 253 ~~~~ 256 (778)
++..
T Consensus 187 Qv~a 190 (562)
T 3ghg_A 187 QVIA 190 (562)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8653
No 10
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.79 E-value=1.2e+02 Score=22.83 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 168 RTDMVQGVKTRLEDLNMVLNQTRDHRQRVLV 198 (778)
Q Consensus 168 ~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l~ 198 (778)
.-+...++++|-+++++.|..++.++..+..
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888888888888877766543
No 11
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=27.56 E-value=1.9e+02 Score=22.86 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 174 GVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVMVRKMKAIYHTL 221 (778)
Q Consensus 174 ~l~~~i~~l~~~l~~~~~~~~~~l~~~~~~l~~w~~~v~k~k~iy~~L 221 (778)
+.+..+.+++..+.+++.+..+.+.+. +.+..-+..+..+-+.|..|
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eY-q~LlniK~~Le~EIatYRkL 50 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLV-GDLLNVKMALDIEIATYRKL 50 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHH
Confidence 344555555666666655555444433 22333444555565666643
No 12
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=26.60 E-value=2.8e+02 Score=23.05 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 172 VQGVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVMVRKMKAIYHTL 221 (778)
Q Consensus 172 l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~~~l~~w~~~v~k~k~iy~~L 221 (778)
..+.+..|.+++..+.+++.+..+.+.+. +.+..-+..+..+-+.|..|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EY-q~LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEY-QELLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665555444 23333455566666777644
No 13
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.10 E-value=2.2e+02 Score=21.18 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 167 ERTDMVQGVKTRLEDLNMVLNQTRDHRQRV 196 (778)
Q Consensus 167 ~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~ 196 (778)
+.-+.+..+.++|+..++.|.+.+.+++++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777666666666555543
No 14
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.55 E-value=3.2e+02 Score=29.68 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcEEEEEEe-eecCCHHH
Q psy6250 168 RTDMVQGVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVMVRKMKAIYHTLNSFNMDVTKKCLIGECW-VPVKHLTF 246 (778)
Q Consensus 168 ~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~~~l~~w~~~v~k~k~iy~~LN~~~~~~t~~~~i~eGW-vP~~~~~~ 246 (778)
..+...+|+++|+.++..+...-..+ ++|+ ..|+..+.+++|++.-. ..|.-..+..|-+.--+ |..++.++
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~~i-r~Lq---~~l~~q~~kiqRLE~~I---d~c~~~C~~sC~~~l~~~vD~e~ye~ 183 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQRI-NLLQ---KNVRDQLVDMKRLEVDI---DIKIRSCKGSCSRALEHKVDLEDYKN 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH-HHHH---HHHHHHHHHHHHHHHHH---HHHhcccccccchhhhhhccHHHHHH
Confidence 34445556666666555554443322 2222 23333344444433221 22322223333322222 24556667
Q ss_pred HHHHHHcccc
Q psy6250 247 VRLTLAEGSK 256 (778)
Q Consensus 247 i~~~L~~~~~ 256 (778)
.++.|.++..
T Consensus 184 qqKQL~qv~a 193 (390)
T 1deq_A 184 QQKQLEQVIA 193 (390)
T ss_pred HHHHHHhhhh
Confidence 7777777643
No 15
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.08 E-value=6.6e+02 Score=27.89 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=32.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHhccccccCCcEEEEEEeeecCCHHHHHHHHHcccc
Q psy6250 203 ELHAWSVMVRK-MKAIYHTLNSFNMDVTKKCLIGECWVPVKHLTFVRLTLAEGSK 256 (778)
Q Consensus 203 ~l~~w~~~v~k-~k~iy~~LN~~~~~~t~~~~i~eGWvP~~~~~~i~~~L~~~~~ 256 (778)
+|+..+.+++| |.+|-..+..|+...++.+ +==|..++.+.+++.|+++..
T Consensus 140 ~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~---~y~VD~~~Ye~~QKqLeQv~a 191 (491)
T 1m1j_A 140 SIQEQVVEMKRLEVDIDIKIRACKGSCARSF---DYQVDKEGYDNIQKHLTQASS 191 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTBSSCC---CCCCCTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhhH---HhhhcHHHHHHHHHHHHHhhc
Confidence 34445555555 4456556667765544433 333778889999999998754
No 16
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.90 E-value=1.1e+02 Score=20.00 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHH
Q psy6250 3 LERTESEILELSQNAINLKSNY 24 (778)
Q Consensus 3 ~~~~e~el~e~~~n~~~L~~~~ 24 (778)
-+++++||.++.+....|++.+
T Consensus 3 adelykeledlqerlrklrkkl 24 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677666666665555543
No 17
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.87 E-value=2.5e+02 Score=20.88 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy6250 3 LERTESEILELSQNAINLKSNYLELTELKHVLEKT 37 (778)
Q Consensus 3 ~~~~e~el~e~~~n~~~L~~~~~~L~E~k~VL~k~ 37 (778)
+.++|++-+++......|..+...|.-.-+.|++.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 56888888998888888888888887776666643
No 18
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=20.50 E-value=3.9e+02 Score=22.56 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 170 DMVQGVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVMVRKMKAIYHTL 221 (778)
Q Consensus 170 ~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~~~~l~~w~~~v~k~k~iy~~L 221 (778)
..++..+..|.+++..+.+++.+..+.+.+. +.+..-+..+..+-+.|..|
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~ql~EY-q~LlnvK~~Le~EIatYRkL 78 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQQLDEY-QELLDIKLALDMEIHAYRKL 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHH
Confidence 3455666666667777777666665555544 22333445555565666543
No 19
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.41 E-value=1.5e+02 Score=25.94 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy6250 166 QERTDMVQGVKTRLEDLNMVLNQTRDHRQRVL----VSVAKELHAWSVMVRKMKAIYH 219 (778)
Q Consensus 166 ~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l----~~~~~~l~~w~~~v~k~k~iy~ 219 (778)
+++++.+.+++..+++.+..|++++-+.+.+= ......++.|+..+.+.|.-+.
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk 91 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFK 91 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999987654321 1222345566666666655443
Done!