Query psy6250
Match_columns 778
No_of_seqs 274 out of 1039
Neff 6.2
Searched_HMMs 13730
Date Fri Aug 16 21:35:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6250.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6250hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 49.3 70 0.0051 26.7 13.4 34 2-35 2-35 (133)
2 d1vcsa1 a.47.2.1 (A:8-96) Vesi 24.9 66 0.0048 25.6 6.1 30 166-195 27-56 (89)
3 d1x6ea2 g.37.1.1 (A:41-66) Zin 16.6 12 0.00089 23.5 -0.3 12 678-689 15-26 (26)
4 d1yf2a2 d.287.1.2 (A:221-425) 15.6 82 0.006 26.9 5.3 29 169-197 165-193 (205)
5 d1ykhb1 a.252.1.1 (B:2-130) RN 14.8 2E+02 0.015 24.1 7.4 36 165-200 86-121 (129)
6 d1rkla_ f.23.30.1 (A:) Oligosa 13.5 86 0.0062 20.4 3.3 21 446-466 9-29 (36)
7 d1ydxa1 d.287.1.2 (A:1-193) Bi 13.0 1.5E+02 0.011 25.1 6.3 33 168-200 149-181 (193)
8 d2q07a2 c.18.1.4 (A:244-393) U 12.4 39 0.0028 29.8 1.8 69 110-180 62-147 (150)
9 d1ciia1 f.1.1.1 (A:451-624) Co 12.4 42 0.0031 30.3 2.1 32 306-337 131-162 (174)
10 d2clyb1 f.53.1.1 (B:4-123) ATP 12.2 2.3E+02 0.016 23.6 6.8 49 145-196 64-118 (120)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=49.27 E-value=70 Score=26.73 Aligned_cols=34 Identities=9% Similarity=0.026 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy6250 2 HLERTESEILELSQNAINLKSNYLELTELKHVLE 35 (778)
Q Consensus 2 ~~~~~e~el~e~~~n~~~L~~~~~~L~E~k~VL~ 35 (778)
.++++..++.++.+..+.|++++.++.....=+.
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~ 35 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELE 35 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444444333333
No 2
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.94 E-value=66 Score=25.62 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 166 QERTDMVQGVKTRLEDLNMVLNQTRDHRQR 195 (778)
Q Consensus 166 ~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~ 195 (778)
+++++.+.+++..+++.+..|++++-+.+.
T Consensus 27 eerk~~l~~ie~~leEA~ell~qMelEvr~ 56 (89)
T d1vcsa1 27 DEKKQMVANVEKQLEEARELLEQMDLEVRE 56 (89)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999876543
No 3
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.65 E-value=12 Score=23.50 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=10.1
Q ss_pred hhhhhhhhheee
Q psy6250 678 PAEILIHQSIHT 689 (778)
Q Consensus 678 ~~ei~ihq~IhT 689 (778)
-+.+..||.|||
T Consensus 15 ~s~L~~HqriHT 26 (26)
T d1x6ea2 15 NSGLINHQRIHT 26 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred CcccccCccCCC
Confidence 468889999997
No 4
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=15.57 E-value=82 Score=26.91 Aligned_cols=29 Identities=7% Similarity=0.230 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 169 TDMVQGVKTRLEDLNMVLNQTRDHRQRVL 197 (778)
Q Consensus 169 ~~~l~~l~~~i~~l~~~l~~~~~~~~~~l 197 (778)
.+.+..+.++++..++.++++++.++.++
T Consensus 165 ~~~l~~id~~i~~~~~~~~~l~~~k~~Ll 193 (205)
T d1yf2a2 165 AKILSSVDKSIELKKQKKEKLQRMKKKIM 193 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444443333
No 5
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.83 E-value=2e+02 Score=24.14 Aligned_cols=36 Identities=8% Similarity=0.198 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 165 HQERTDMVQGVKTRLEDLNMVLNQTRDHRQRVLVSV 200 (778)
Q Consensus 165 ~~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~ 200 (778)
++...+.+++++++.++.++++.+.-++.++++..+
T Consensus 86 ee~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i 121 (129)
T d1ykhb1 86 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHV 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566555555555555444444444433
No 6
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.53 E-value=86 Score=20.37 Aligned_cols=21 Identities=33% Similarity=0.581 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6250 446 KLSIIFGVVHMIFGVTLSVIN 466 (778)
Q Consensus 446 klSIiiGvihm~~G~iL~~~N 466 (778)
.++|+||+..|++=++..+..
T Consensus 9 ~~~i~fgi~mmtliviyh~~~ 29 (36)
T d1rkla_ 9 SLAITFGIVMMTLIVIYHAVD 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEeehhHHHHHHHHHHhhhc
Confidence 578999999999987765544
No 7
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=12.98 E-value=1.5e+02 Score=25.14 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 168 RTDMVQGVKTRLEDLNMVLNQTRDHRQRVLVSV 200 (778)
Q Consensus 168 ~~~~l~~l~~~i~~l~~~l~~~~~~~~~~l~~~ 200 (778)
..+.+..+.++++.+++.++..++.++.++++.
T Consensus 149 I~~~l~~ld~~i~~~~~~i~~l~~~~~~ll~~l 181 (193)
T d1ydxa1 149 IANTLSVFDERLENLASLIEINRKLRDEYAHKL 181 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888777777666654
No 8
>d2q07a2 c.18.1.4 (A:244-393) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=12.45 E-value=39 Score=29.85 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=30.3
Q ss_pred CCCcccccccccccccCc-----------------ccccEEEEEEEeChhhHHHHHHhhccccceecCCCCChhhHHHHH
Q psy6250 110 QIPYPFVKFDYSLLFQGN-----------------EIYKTVFVAFFQGEQLKSRVKKVCSGFHASFYPCPSAHQERTDMV 172 (778)
Q Consensus 110 ~~Pypf~~~d~~~~~tg~-----------------~~~k~vfii~~~g~~~~~kv~kI~~~f~~~~~~~p~~~~~~~~~l 172 (778)
+..||+..+|..| ||+ ..++.--+|.+.+...++-+.++.+..|.......++...-.+.+
T Consensus 62 E~~yPa~~YD~pv--tg~w~~~E~~~i~~~l~~~l~r~~y~~iIah~~~~~~~i~~~~~e~~~~~i~~T~~~~~ts~esL 139 (150)
T d2q07a2 62 ELLYPAVNYDTPV--TGHWSEEEVSFVAGWLKRFIEKGGFRKVVAHVTGGYRKVVERVEDEVEAEVVYTAEKDVLSDESI 139 (150)
T ss_dssp TTC--------------CCCHHHHHHHHHHHHHHHHHHTCSEEEECCCTHHHHHHHHHHTTCSSEEEECCSSCTTSHHHH
T ss_pred HhhchhhhCCCCc--cccccHHHHHHHHHHHHHHHHhCCCcEEEEECCccHHHHHHHHhhhcCCeeeeccCCCCCCHHHH
Confidence 3578999999876 553 111233456666667777777777777777543333323334455
Q ss_pred HHHHHHHH
Q psy6250 173 QGVKTRLE 180 (778)
Q Consensus 173 ~~l~~~i~ 180 (778)
+.|++.++
T Consensus 140 ~~L~~al~ 147 (150)
T d2q07a2 140 ERLKQEIE 147 (150)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 55554443
No 9
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=12.38 E-value=42 Score=30.28 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=29.0
Q ss_pred cchhHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q psy6250 306 GLYTIVTFPFLFGIMFGDAGHGIILTLFGAFM 337 (778)
Q Consensus 306 t~~~~itFPffFG~MfGDvGhGlllll~~l~l 337 (778)
+..++.+||++.|-..|=+|+++++.++|.+.
T Consensus 131 sav~a~~fs~~~g~~lgi~g~ali~~~v~a~I 162 (174)
T d1ciia1 131 TALVALVFSILTGSALGIIGYGLLMAVTGALI 162 (174)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999999999999865
No 10
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.20 E-value=2.3e+02 Score=23.56 Aligned_cols=49 Identities=12% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHhhccccceecCCCCC------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6250 145 SRVKKVCSGFHASFYPCPSA------HQERTDMVQGVKTRLEDLNMVLNQTRDHRQRV 196 (778)
Q Consensus 145 ~kv~kI~~~f~~~~~~~p~~------~~~~~~~l~~l~~~i~~l~~~l~~~~~~~~~~ 196 (778)
++++|-.+++. +|+|.+ ..+..+..++..+-+++.+.+|.++++++..+
T Consensus 64 D~fek~y~alk---vp~p~d~~t~~ida~e~e~~~~~~~~~~~s~~rI~~lekeLe~i 118 (120)
T d2clyb1 64 DDFEKKFNALK---VPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKM 118 (120)
T ss_dssp HHHHHHHTTCC---CCCCCCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccc---CCCChhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!