RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6250
(778 letters)
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 471 bits (1213), Expect = e-156
Identities = 222/587 (37%), Positives = 317/587 (54%), Gaps = 79/587 (13%)
Query: 3 LERTESEILELSQNAINLKSNYLELTELKHVLEKTQTFF------HEIW-NIFFGGRYII 55
+ E+EI E+ +N +L+ EL E +VL++ ++F N+ +Y+
Sbjct: 76 ILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLDIDFKYLR 135
Query: 56 LLMGLFSIY-TGLIYNDFFSKSISVFGSAWKNNYNLSTIMENRDLILDPATSDYDQIPYP 114
GL + G+I + W+ E + + DP
Sbjct: 136 GAEGLKLGFVAGVINREKLEAFEREL---WRACRGYIRQAEIEEPLEDPK---------- 182
Query: 115 FVKFDYSLLFQGNEIYKTVFVAFFQGEQLKSRVKKVCSGFHASFYPCPSAHQERTDMVQG 174
KTVF+ FF G++ +VKK+ F Y P ER++++
Sbjct: 183 ----------------KTVFIIFFVGKEDLDKVKKILDSFGFELYDVPETEGERSELISK 226
Query: 175 VKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVMVRKMKAIYHTLNSFNMDVTKKCLI 234
V R+E+L VL QT H ++VLV +A EL AW V K KA+Y TLN FN K LI
Sbjct: 227 VNKRIEELQRVLEQTESHLEKVLVKIADELLAWDEQVSKEKAVYETLNLFN--YDTKTLI 284
Query: 235 GECWVPVKHLTFVRLTLAEGSKAVGSSIPSFLNVIETNEMPPTFNQTNRFTQGFQNLIDS 294
E WVP K L ++ L ++ GS +PS N IETNE PPT+ + N+FT FQ ++D+
Sbjct: 285 AEGWVPAKDLEKLKAALENATEGSGS-VPSIENDIETNEEPPTYLKNNKFTAPFQMIVDA 343
Query: 295 YGIATYRELNPGLYTIVTFPFLFGIMFGDAGHGIILTLFGAFMVIWEQKLMKKKTTNEIW 354
YGI YRE++P +TI+TFPF FG+MFGDAG+G+++ L +V+ E+KL KKK
Sbjct: 344 YGIPKYREIDPTPFTIITFPFFFGMMFGDAGYGLLMFLIALLLVLLEKKLGKKK------ 397
Query: 355 NIFFGGRYIILLMGLFSIYTGLIYNDFFSKSISVFGSAWKNNYNLSTIMENRDLILDPAT 414
F GRYI+LLMG+FSIYTG IYND F KS+++FGS W + + L L P
Sbjct: 398 ---FKGRYILLLMGVFSIYTGFIYNDCFGKSLNIFGSGWLWPVMIKSGET---LTLAPHE 451
Query: 415 SDYDQIPYPFGLDPVWQVAENKIIFLNSYKMKLSIIFGVVHMIFGVTLSVINHVHFRKPV 474
PYPFG+DP W ENK++FLNSYKMKLSII GV+HM FG+ L NHV F+ +
Sbjct: 452 G-----PYPFGIDPEWNGVENKLLFLNSYKMKLSIILGVIHMTFGLFLGFFNHVKFKSKI 506
Query: 475 NILLEFLPQLIFLVLLFGYMVTLMFMKWIMYAPQNPLLTSPRCAPSVLILFINMMLFKHS 534
+I F+PQL +L+++FGY+V L+ KW++ + + + APS+LI INM LF
Sbjct: 507 DIKDAFIPQLSWLIIIFGYLVILIIYKWLVDWAK-----TSKPAPSLLIGLINMFLFPG- 560
Query: 535 IPFPGCEEYMYESQHQVQTVLVLISLACIPVMLLGKPIYLIFFASKN 581
VQ LV+++L C+P++LL KP++L+ K
Sbjct: 561 ----------------VQVFLVVLALVCVPILLLLKPLFLMREGKKG 591
Score = 149 bits (377), Expect = 3e-37
Identities = 72/171 (42%), Positives = 94/171 (54%), Gaps = 41/171 (23%)
Query: 608 VQTVLVLISLACIPVMLLGKPIYLIFFASKNKHKHQQVSNNGDLQGGIELHSNDEVLPSS 667
VQ LV+++L C+P++LL KP++L+ E
Sbjct: 561 VQVFLVVLALVCVPILLLLKPLFLMRE-----------------------GKKGE----- 592
Query: 668 PEGPEEEHEEPAEILIHQSIHTIEYVLSTISHTASYLRLWALSLAHAQLSEVLWNMVLKL 727
E E++IHQ IHTIE+ L +SHTASYLRLWALSLAHAQLS VL MV+ +
Sbjct: 593 --------FEFGEVMIHQVIHTIEFCLGCVSHTASYLRLWALSLAHAQLSAVLNTMVILI 644
Query: 728 GLQSESHAGAIMLYISFALWAMFTLAILVMMEGLSAFLHTLRLHWKERVFF 778
G +S G I L + F + + AI ++MEGLSAFLH LRLH+ E FF
Sbjct: 645 GFES---IGVIALVVVFIIVFVLGHAINLIMEGLSAFLHALRLHYVE--FF 690
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 187 bits (478), Expect = 1e-50
Identities = 89/437 (20%), Positives = 184/437 (42%), Gaps = 54/437 (12%)
Query: 99 LILDPATSDYDQIPYPFVKFDYSLLFQGNEIYKTVFVAFFQGEQLKSRVKKVCSGFHASF 158
L++ +++ + + G + +V + G + +V K+ +
Sbjct: 158 LLVRLGLVRREKLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKVSKILNELGFEL 217
Query: 159 YPCPSAHQERTDMVQGVKTRLEDLNMVLNQTRDHRQRVLVSVAKELHAWSVMVRKMKAIY 218
Y P ++++ ++ + ++ L R + + +A+EL A ++ KA+
Sbjct: 218 YEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIEKALG 277
Query: 219 HTLNSFNMDVTKKCLIGECWVPVKHLTFVRLTLAEGSKAVGSSIPSFLNVIETN---EMP 275
L+ T+ L E WVP + ++ + ++A G + + V ET+ E
Sbjct: 278 DVLSKLAR--TEYTLAIEGWVPADEVEKLKKII---NRATGGAA--YFEVSETDEDKEEV 330
Query: 276 PTFNQTNRFTQGFQNLIDSYGIATYRELNPGLYTIVTFPFLFGIMFGDAGHGIILTLFGA 335
PT + +F F++L + YGI Y E++P + + FP FGIMFGD G+G++L L
Sbjct: 331 PTKLRNPKFISPFESLTEMYGIPKYGEIDPTPFLALFFPLFFGIMFGDLGYGLLLFLISL 390
Query: 336 FMVIWEQKLMKKKTTNEIWNIFFGGRYIILLMGLFSIYTGLIYNDFFSKSISVFGSAWKN 395
++ + K + ++ I L +G+ +I G +Y +FF ++ +
Sbjct: 391 LLLRYF-KKRLPEGLKKLGKIL-------LYLGISTIIWGFLYGEFFGPAVLLST----- 437
Query: 396 NYNLSTIMENRDLILDPATSDYDQIPYPFGLDPVWQVAENKIIFLNSYKMKLSIIFGVVH 455
P GL V+ + ++F S + LS++ GV+H
Sbjct: 438 --------------------------LPIGLLFVYHGLDEGLLF--SNILILSLLIGVLH 469
Query: 456 MIFGVTLSVINHVHFRKPVNILLEFLPQLIFLVLLFGYMVTLMFMKWIMYAPQNPLLTSP 515
+ G+ L IN V + +I LPQL++L+++ G ++ ++ KW + +
Sbjct: 470 LSLGLLLGFINRV---RSGDIKGAILPQLLWLLIILGLLLLILGYKWSVPELLGMVGAMF 526
Query: 516 RCAPSVLILFINMMLFK 532
+ +L + ++L
Sbjct: 527 GAFGILGLLVVGLILVP 543
Score = 89.3 bits (222), Expect = 3e-18
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 678 PAEILIHQSIHTIEYVLSTISHTASYLRLWALSLAHAQLSEVLWNMVLKLGLQSESHAGA 737
P + I Q I E VLS +S SYLRL AL LA A ++ V+ M L G
Sbjct: 543 PGLVAIGQGILGFEGVLSLLSDVLSYLRLLALGLAGASIASVVNLMTGLLI--GSVPFGI 600
Query: 738 IMLYISFALWAMFTLAILVMMEGLSAFLHTLRLHWKERVFF 778
I+ I + +A + L A +H LRLH+ E FF
Sbjct: 601 ILGIIILIFGHLLNIA----LSILGAGVHGLRLHYVE--FF 635
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 104 bits (261), Expect = 5e-23
Identities = 60/280 (21%), Positives = 108/280 (38%), Gaps = 53/280 (18%)
Query: 238 WVPVKHLTFVRLTLAEGSKAVGSSIPSFLNVIETNEMPPTFNQTNRFTQGFQNLIDSYGI 297
WVP + +L GS+ F+ E E PT + +F + F++L + Y +
Sbjct: 281 WVPEDRVK--KLKELIDKATGGSAYVEFVEPDEEEEEVPTKLKNPKFIKPFESLTEMYSL 338
Query: 298 ATYRELNPGLYTIVTFPFLFGIMFGDAGHGIILTLFGAFMVIWEQKLMKKKTTNEIWNIF 357
Y E++P + + FP FG+M GDAG+G++L L G + + K + + I
Sbjct: 339 PKYNEIDPTPFLAIFFPLFFGMMLGDAGYGLLLLLIGLL--LSFKLKKKSEGLKRLLKIL 396
Query: 358 FGGRYIILLMGLFSIYTGLIYNDFFSKSISVFGSAWKNNYNLSTIMENRDLILDPATSDY 417
+G+ +I GL+ FF S+ +F L
Sbjct: 397 I-------YLGISTIIWGLLTGSFFGFSLPIF------------------LPGGYLEL-- 429
Query: 418 DQIPYPFGLDPVWQVAENKIIFLNSYKMKLSIIFGVVHMIFGVTLSVINHVHFRKPVNIL 477
L V I+ +S++ GV+H+ G+ L IN+V +
Sbjct: 430 --PEGYPSLSTENDV--MTILI-------ISLLIGVIHLFLGLLLGFINNVRKGDYKDAF 478
Query: 478 LEFLPQLIFL----VLLFGYMVTLMFM-------KWIMYA 506
L L L+ L +++ G ++ + K+++
Sbjct: 479 LAQLGWLLILLGILLIVLGGFGLVVGLGPLGLIGKYLIIG 518
Score = 53.8 bits (130), Expect = 3e-07
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 693 VLSTISHTASYLRLWALSLAHAQLSEVLWNMVLKLGLQSESHAGAIMLYISFALWAMFTL 752
+ + SY RL AL LA A ++ N++ L S G I+ I F + +
Sbjct: 546 ITGYLGDVLSYARLMALGLAGAGIAMAF-NLMAGLLPPSIGVIGIIVGIIIFIFGHLLNI 604
Query: 753 AILVMMEGLSAFLHTLRLHWKERVFF 778
A + L AF+H LRLH+ E FF
Sbjct: 605 A----LSILGAFVHGLRLHYVE--FF 624
>gnl|CDD|217843 pfam04012, PspA_IM30, PspA/IM30 family. This family includes PspA
a protein that suppresses sigma54-dependent
transcription. The PspA protein, a negative regulator of
the Escherichia coli phage shock psp operon, is produced
when virulence factors are exported through secretins in
many Gram-negative pathogenic bacteria and its homologue
in plants, VIPP1, plays a critical role in thylakoid
biogenesis, essential for photosynthesis. Activation of
transcription by the enhancer-dependent bacterial
sigma(54) containing RNA polymerase occurs through ATP
hydrolysis-driven protein conformational changes enabled
by activator proteins that belong to the large AAA(+)
mechanochemical protein family. It has been shown that
PspA directly and specifically acts upon and binds to
the AAA(+) domain of the PspF transcription activator.
Length = 220
Score = 32.0 bits (73), Expect = 0.97
Identities = 6/59 (10%), Positives = 18/59 (30%), Gaps = 9/59 (15%)
Query: 165 HQERTDMVQGVKTRLEDLNMVLNQTRDHRQRVLV--SVAKELHAWSVMVRKMKAIYHTL 221
++ V+ ++ +L L + Q + + + AK + +
Sbjct: 107 LTQQRSAVEQLRKQLAALETKIQQLKAKKTALKARLKAAK-------AQEAVNTSLGSA 158
>gnl|CDD|225375 COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily
[General function prediction only].
Length = 264
Score = 31.2 bits (71), Expect = 1.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 59 GLFSIYTGLIYNDFFSKSISVFGSAWKNN 87
GLF ++ L Y D F + + S W +N
Sbjct: 148 GLFVLFALLTYPDCFGRYGLISPSLWWHN 176
Score = 31.2 bits (71), Expect = 1.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 368 GLFSIYTGLIYNDFFSKSISVFGSAWKNN 396
GLF ++ L Y D F + + S W +N
Sbjct: 148 GLFVLFALLTYPDCFGRYGLISPSLWWHN 176
>gnl|CDD|214430 MTH00140, COX2, cytochrome c oxidase subunit II; Provisional.
Length = 228
Score = 31.1 bits (71), Expect = 1.8
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 195 RVLVSVAKELHAWSV--MVRKMKAIYHTLNSFNMDVTKKCLI-GEC 237
RVLV+ A +H+W+V + K+ AI LN + + + + G+C
Sbjct: 151 RVLVTSADVIHSWTVPSLGVKVDAIPGRLNQLSFEPKRPGVFYGQC 196
>gnl|CDD|223205 COG0127, COG0127, Xanthosine triphosphate pyrophosphatase
[Nucleotide transport and metabolism].
Length = 194
Score = 30.3 bits (69), Expect = 2.7
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 14/79 (17%)
Query: 632 IFFASKNKHKHQQVSNNGDLQGGIELHSNDEVLPSSPEGPEEEHEEPAEILIHQSIHTIE 691
I A+ NK K +++ + GGI E+ G E E EE E
Sbjct: 4 IVLATGNKGKLRELKSILA-PGGI------EIESLKELGVEIEVEETGL-------TFEE 49
Query: 692 YVLSTISHTASYLRLWALS 710
L A L ++
Sbjct: 50 NALLKARAAAKATGLPVIA 68
>gnl|CDD|239654 cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins.
This ClC family presents in bacteria, where it
facilitates acid resistance in acidic soil. Mutation of
this gene (sycA) in Rhizobium tropici CIAT899 causes
serious deficiencies in nodule development, nodulation
competitiveness, and N2 fixation on Phaseolus vulgaris
plants, due to its reduced ability for acid resistance.
This family is part of the ClC chloride channel
superfamiy. These proteins catalyse the selective flow
of Cl- ions across cell membranes and Cl-/H+ exchange
transport. These proteins share two characteristics that
are apparently inherent to the entire ClC chloride
channel superfamily: a unique double-barreled
architecture and voltage-dependent gating mechanism. The
gating is conferred by the permeating anion itself,
acting as the gating charge.
Length = 378
Score = 29.9 bits (68), Expect = 5.0
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Query: 294 SYGIATYRELNPGLYTIVTFPFLFGIMFGDAGHGIILTLFGAFMVIWEQKLMKKKTTNEI 353
Y I L+P L+ V L GI+FG AG LF A ++ + +KL+KK+ N
Sbjct: 186 HYHIVFIPTLDPLLFVKV---ILAGIIFGLAG-----RLF-AELLHFLKKLLKKRIKNPY 236
Query: 354 WNIFFGGRYIILLMGLFSI--YTGL----IYNDFFSKSISVFGSAWK 394
F GG IILL+ L Y GL I + FF ++ + K
Sbjct: 237 LRPFVGGLLIILLVYLLGSRRYLGLGTPLIEDSFFGGTVYPYDWLLK 283
>gnl|CDD|217745 pfam03814, KdpA, Potassium-transporting ATPase A subunit.
Length = 552
Score = 29.6 bits (67), Expect = 8.1
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 315 FLFGIMFGDAGHGIILTLFGAFMVIW 340
F FG M G+ G +F A VI+
Sbjct: 264 FTFGRMVGNRRQGWA--IFWAMFVIF 287
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 29.5 bits (67), Expect = 9.4
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 9/108 (8%)
Query: 672 EEEHEEPAEILIHQSIHTIEYVLSTISHTASYLRLWALSLAHAQLSEVLWNMVLKLGLQS 731
EE + PA+I+ ++ Y + A L E+L +++ L
Sbjct: 47 PEEVDLPADIV--AAVEKAGYSARLTAALA-----DPAEAEARLLRELLRRLIIAGLLTL 99
Query: 732 ESHAGAIMLYISFAL--WAMFTLAILVMMEGLSAFLHTLRLHWKERVF 777
++ L + L W F LA V+ G F +
Sbjct: 100 PLLLLSLGLLLGAFLLPWVSFLLATPVLFYGGWPFYRGAWRALRRGRL 147
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.425
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 40,059,676
Number of extensions: 4036476
Number of successful extensions: 5588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5552
Number of HSP's successfully gapped: 106
Length of query: 778
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 674
Effective length of database: 6,324,786
Effective search space: 4262905764
Effective search space used: 4262905764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.0 bits)