RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6250
         (778 letters)



>d1lkia_ a.26.1.1 (A:) Leukemia inhibitory factor (LIF) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 172

 Score = 30.3 bits (68), Expect = 0.60
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 123 LFQGNEIYKTVFVAFF--QGEQLKSRVKKVCSGFHASFYPCPSAHQERTDMVQGVKTRLE 180
           L Q N     +F++++  QGE   + V+K+C+     F        E+T +V+  +  + 
Sbjct: 22  LAQLNGSANALFISYYTAQGEPFPNNVEKLCAPNMTDFPSFHGNGTEKTKLVELYRM-VA 80

Query: 181 DLNMVL-NQTRDHRQRVLVSVAKELHA 206
            L+  L N TRD  Q+VL   A  L  
Sbjct: 81  YLSASLTNITRD--QKVLNPTAVSLQV 105


>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 386

 Score = 28.2 bits (62), Expect = 4.3
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 416 DYDQIPYPFGLDPVWQVAENKIIFLNSYK----MKLSIIFGVVHMIFGVTLSVINHVHFR 471
           DYD++   FG   + +   N+I      +    ++  I F   H      L    +   +
Sbjct: 18  DYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFS--HRDMNQVLDAYEN---K 72

Query: 472 KPVNILLEFLPQLIFLVLLFGYMVTLMFMKWIMYAPQNP 510
           KP  +     P    + +  G+++  +F KW+      P
Sbjct: 73  KPFYLYTGRGPSSEAMHV--GHLIPFIFTKWLQDVFNVP 109


>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 186

 Score = 26.7 bits (58), Expect = 9.4
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 632 IFFASKNKHKHQQVSNNGDLQGGIELHSNDEVLPSSPEGPEEEHEEPAEILIHQSIH 688
           IFF + N  K ++V+   +  G   +    E++    E PE + E+  +++      
Sbjct: 3   IFFITSNPGKVREVA---NFLGTFGI----EIVQLKHEYPEIQAEKLEDVVDFGISW 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,853,594
Number of extensions: 133668
Number of successful extensions: 386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 9
Length of query: 778
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 686
Effective length of database: 1,144,436
Effective search space: 785083096
Effective search space used: 785083096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.3 bits)