BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6258
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 49 DYWMYHSGCPVALGNKWGKLLLSGLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANT 108
DY+ HS + N L+ L DVE GG T FP LNL+V P KG AV++ + +
Sbjct: 129 DYFAEHSR---SAANNRISTLVXYLNDVEEGGETFFPKLNLSVHPRKGXAVYFEYFYQDQ 185
Query: 109 LLDYRMYHSGCPVALGNKW 127
L+ H G PV G KW
Sbjct: 186 SLNELTLHGGAPVTKGEKW 204
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%)
Query: 11 LTDVELGGATIFPSLNLTVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVALGNKW 65
L DVE GG T FP LNL+V P KG AV++ + + L+ H G PV G KW
Sbjct: 150 LNDVEEGGETFFPKLNLSVHPRKGXAVYFEYFYQDQSLNELTLHGGAPVTKGEKW 204
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 69 LLSGLTDVELGGATIFPSLN---------------LTVFPEKGSAVFWYNAHANTLLDYR 113
+L LT VE GG T+ P+ L V P KG A+ +Y+ + D
Sbjct: 145 MLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPA 204
Query: 114 MYHSGCPVALGNKW 127
H CP G+KW
Sbjct: 205 SLHGSCPTLKGDKW 218
Score = 33.1 bits (74), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 11 LTDVELGGATIFPSLN---------------LTVFPEKGSAVFWHNAHANTLLDYWMYHS 55
LT VE GG T+ P+ L V P KG A+ +++ + D H
Sbjct: 149 LTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHG 208
Query: 56 GCPVALGNKW 65
CP G+KW
Sbjct: 209 SCPTLKGDKW 218
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 69 LLSGLTDVELGGATIFPSLN---------------LTVFPEKGSAVFWYNAHANTLLDYR 113
+L LT VE GG T+ P+ L V P KG A+ +Y+ + D
Sbjct: 137 MLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPA 196
Query: 114 MYHSGCPVALGNKW 127
H CP G+KW
Sbjct: 197 SLHGSCPTLKGDKW 210
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 11 LTDVELGGATIFPSLN---------------LTVFPEKGSAVFWHNAHANTLLDYWMYHS 55
LT VE GG T+ P+ L V P KG A+ +++ + D H
Sbjct: 141 LTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHG 200
Query: 56 GCPVALGNKW 65
CP G+KW
Sbjct: 201 SCPTLKGDKW 210
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 69 LLSGLTDVELGGATIFPSLN---------------LTVFPEKGSAVFWYNAHANTLLDYR 113
+L LT VE GG T+ P+ L V P KG A+ +Y+ + D
Sbjct: 136 MLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPA 195
Query: 114 MYHSGCPVALGNKW 127
H CP G+KW
Sbjct: 196 SLHGSCPTLKGDKW 209
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 11 LTDVELGGATIFPSLN---------------LTVFPEKGSAVFWHNAHANTLLDYWMYHS 55
LT VE GG T+ P+ L V P KG A+ +++ + D H
Sbjct: 140 LTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHG 199
Query: 56 GCPVALGNKW 65
CP G+KW
Sbjct: 200 SCPTLKGDKW 209
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 73 LTDVELGGATIFPSLN---------------LTVFPEKGSAVFWYNAHANTLLDYRMYHS 117
LT VE GG T+ P+ L V P KG A+ +Y+ + D H
Sbjct: 149 LTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALXFYSLKPDGSNDPASLHG 208
Query: 118 GCPVALGNKW 127
CP G+KW
Sbjct: 209 SCPTLKGDKW 218
Score = 32.3 bits (72), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 11 LTDVELGGATIFPSLN---------------LTVFPEKGSAVFWHNAHANTLLDYWMYHS 55
LT VE GG T+ P+ L V P KG A+ +++ + D H
Sbjct: 149 LTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALXFYSLKPDGSNDPASLHG 208
Query: 56 GCPVALGNKW 65
CP G+KW
Sbjct: 209 SCPTLKGDKW 218
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
pdb|1W1J|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
Length = 560
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 49 DYWMYHSGCPVALGNKWGKLLLSGL 73
D+WM HSG V L N G+LL +G+
Sbjct: 192 DHWMMHSGMEVVLAN--GELLRTGM 214
>pdb|1W1K|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
pdb|1W1K|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
Length = 560
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 49 DYWMYHSGCPVALGNKWGKLLLSGL 73
D+WM HSG V L N G+LL +G+
Sbjct: 192 DHWMMHSGMEVVLAN--GELLRTGM 214
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
pdb|1W1L|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
Length = 560
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 49 DYWMYHSGCPVALGNKWGKLLLSGL 73
D+WM HSG V L N G+LL +G+
Sbjct: 192 DHWMMHSGMEVVLAN--GELLRTGM 214
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
pdb|1W1M|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
Length = 560
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 49 DYWMYHSGCPVALGNKWGKLLLSGL 73
D+WM HSG V L N G+LL +G+
Sbjct: 192 DHWMMHSGMEVVLAN--GELLRTGM 214
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
Length = 560
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 49 DYWMYHSGCPVALGNKWGKLLLSGL 73
D+WM HSG V L N G+LL +G+
Sbjct: 192 DHWMMHSGMEVVLAN--GELLRTGM 214
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
Length = 560
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 49 DYWMYHSGCPVALGNKWGKLLLSGL 73
D+WM HSG V L N G+LL +G+
Sbjct: 192 DHWMMHSGMEVVLAN--GELLRTGM 214
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
Length = 560
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 49 DYWMYHSGCPVALGNKWGKLLLSGL 73
D+WM HSG V L N G+LL +G+
Sbjct: 192 DHWMMHSGMEVVLAN--GELLRTGM 214
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 49 DYWMYHSGCPVALGNKWGKLLLSGL 73
D+WM HSG V L N G+LL +G+
Sbjct: 192 DHWMMHSGMEVVLAN--GELLRTGM 214
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 49 DYWMYHSGCPVALGNKWGKLLLSGL 73
D+WM HSG V L N G+LL +G+
Sbjct: 192 DHWMMHSGMEVVLAN--GELLRTGM 214
>pdb|3D89|A Chain A, Crystal Structure Of A Soluble Rieske Ferredoxin From Mus
Musculus
Length = 157
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 83 IFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGN 125
I S +T V +Y+ +D R YHSG P+ LG
Sbjct: 26 IRKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGE 68
>pdb|3OYO|A Chain A, Crystal Structure Of Hemopexin Fold Protein Cp4 From Cow
Pea
pdb|3OYO|B Chain B, Crystal Structure Of Hemopexin Fold Protein Cp4 From Cow
Pea
Length = 225
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 22 FPSLNLTVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVALGNKWGKLLLSGLTDVELGGA 81
FPSL T F E G +H + + + + A G K+L+ T E+
Sbjct: 49 FPSLAGTPFAEPGIDCSFHTEASEAYVFSGNHSAYIDYAPGTTNDKILVGPTTIAEM--- 105
Query: 82 TIFPSLNLTVFPEKGSAVF 100
FP LN TVF + + F
Sbjct: 106 --FPVLNNTVFEDSIDSAF 122
>pdb|1ZNP|A Chain A, X-Ray Crystal Structure Of Protein Q8u9w0 From
Agrobacterium Tumefaciens. Northeast Structural
Genomics Consortium Target Atr55.
pdb|1ZNP|B Chain B, X-Ray Crystal Structure Of Protein Q8u9w0 From
Agrobacterium Tumefaciens. Northeast Structural
Genomics Consortium Target Atr55.
pdb|1ZNP|C Chain C, X-Ray Crystal Structure Of Protein Q8u9w0 From
Agrobacterium Tumefaciens. Northeast Structural
Genomics Consortium Target Atr55.
pdb|1ZNP|D Chain D, X-Ray Crystal Structure Of Protein Q8u9w0 From
Agrobacterium Tumefaciens. Northeast Structural
Genomics Consortium Target Atr55.
pdb|1ZNP|E Chain E, X-Ray Crystal Structure Of Protein Q8u9w0 From
Agrobacterium Tumefaciens. Northeast Structural
Genomics Consortium Target Atr55.
pdb|1ZNP|F Chain F, X-Ray Crystal Structure Of Protein Q8u9w0 From
Agrobacterium Tumefaciens. Northeast Structural
Genomics Consortium Target Atr55.
pdb|1ZNP|G Chain G, X-Ray Crystal Structure Of Protein Q8u9w0 From
Agrobacterium Tumefaciens. Northeast Structural
Genomics Consortium Target Atr55
Length = 154
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 32 EKGSAVFWHNAHANTLLDYWMYHSGCPVAL 61
EKG WH ++ W Y++G P+AL
Sbjct: 48 EKGVRSHWHRV--TDAVEVWHYYAGAPIAL 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,188,001
Number of Sequences: 62578
Number of extensions: 163887
Number of successful extensions: 338
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 23
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)