Query psy6258
Match_columns 136
No_of_seqs 206 out of 1616
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 21:45:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 2.4E-30 5.1E-35 207.1 7.6 93 41-135 142-252 (310)
2 KOG1591|consensus 100.0 8.3E-29 1.8E-33 196.4 6.1 94 41-135 186-284 (289)
3 PLN00052 prolyl 4-hydroxylase; 99.8 1.7E-21 3.6E-26 156.2 6.4 75 2-76 163-255 (310)
4 KOG1591|consensus 99.8 2.3E-20 5.1E-25 148.2 5.7 74 2-75 211-286 (289)
5 smart00702 P4Hc Prolyl 4-hydro 99.8 9.3E-19 2E-23 129.2 6.7 81 42-134 94-178 (178)
6 smart00702 P4Hc Prolyl 4-hydro 99.5 6.8E-14 1.5E-18 103.2 5.9 63 2-70 110-176 (178)
7 PRK05467 Fe(II)-dependent oxyg 99.4 1.6E-13 3.4E-18 106.0 6.5 83 41-134 90-177 (226)
8 PF13640 2OG-FeII_Oxy_3: 2OG-F 98.9 1.2E-09 2.7E-14 73.2 4.4 74 50-133 11-99 (100)
9 PRK05467 Fe(II)-dependent oxyg 98.8 3.1E-09 6.7E-14 82.1 4.4 60 2-70 112-175 (226)
10 PHA02869 C4L/C10L-like gene fa 98.8 7.4E-09 1.6E-13 85.2 4.8 71 49-131 114-187 (418)
11 PHA02813 hypothetical protein; 98.6 3.3E-08 7.1E-13 80.2 4.4 55 64-130 122-177 (354)
12 PF13640 2OG-FeII_Oxy_3: 2OG-F 98.3 9.7E-07 2.1E-11 59.0 3.6 61 2-70 23-98 (100)
13 PHA02813 hypothetical protein; 97.7 5.5E-05 1.2E-09 61.7 4.3 52 5-67 124-176 (354)
14 PHA02869 C4L/C10L-like gene fa 97.6 6.3E-05 1.4E-09 62.3 4.3 50 5-65 133-183 (418)
15 COG3128 PiuC Uncharacterized i 96.5 0.0071 1.5E-07 45.9 5.3 54 72-134 123-180 (229)
16 PF03171 2OG-FeII_Oxy: 2OG-Fe( 95.5 0.017 3.6E-07 38.1 3.3 67 63-134 26-97 (98)
17 COG3128 PiuC Uncharacterized i 95.1 0.034 7.3E-07 42.2 4.0 58 7-74 120-181 (229)
18 PF13661 2OG-FeII_Oxy_4: 2OG-F 94.8 0.029 6.2E-07 35.4 2.5 23 2-24 38-64 (70)
19 PF12851 Tet_JBP: Oxygenase do 94.2 0.16 3.5E-06 37.6 5.9 56 65-129 99-165 (171)
20 KOG3710|consensus 94.0 0.15 3.2E-06 39.9 5.4 63 63-134 168-238 (280)
21 PF03336 Pox_C4_C10: Poxvirus 93.9 0.055 1.2E-06 44.3 3.1 70 49-130 90-164 (339)
22 PF09859 Oxygenase-NA: Oxygena 93.8 0.14 3.1E-06 38.0 4.8 80 47-130 71-167 (173)
23 PF13759 2OG-FeII_Oxy_5: Putat 93.8 0.16 3.5E-06 33.9 4.8 28 88-124 65-92 (101)
24 PHA02866 Hypothetical protein; 93.3 0.079 1.7E-06 42.8 3.0 55 65-130 110-164 (333)
25 TIGR02466 conserved hypothetic 93.0 0.32 7E-06 37.0 5.8 69 38-123 98-187 (201)
26 PF09859 Oxygenase-NA: Oxygena 92.5 0.26 5.6E-06 36.6 4.4 64 7-70 91-169 (173)
27 PHA02923 hypothetical protein; 91.6 0.21 4.5E-06 40.3 3.4 56 64-131 87-142 (315)
28 PF13661 2OG-FeII_Oxy_4: 2OG-F 90.3 0.18 3.9E-06 31.7 1.5 37 49-86 22-64 (70)
29 PF03171 2OG-FeII_Oxy: 2OG-Fe( 88.9 0.63 1.4E-05 30.4 3.5 65 2-70 26-95 (98)
30 KOG3710|consensus 87.3 1.8 3.9E-05 34.0 5.5 64 3-75 169-240 (280)
31 TIGR02408 ectoine_ThpD ectoine 82.9 2.3 4.9E-05 33.6 4.4 25 91-124 213-237 (277)
32 COG3751 EGL-9 Predicted prolin 79.2 5.4 0.00012 31.5 5.3 67 61-134 159-239 (252)
33 PF12851 Tet_JBP: Oxygenase do 79.1 6 0.00013 29.2 5.3 57 5-69 100-167 (171)
34 PHA02866 Hypothetical protein; 78.1 3.6 7.8E-05 33.5 4.0 51 5-65 111-161 (333)
35 PHA02923 hypothetical protein; 76.2 4.3 9.4E-05 32.9 4.0 52 5-67 89-140 (315)
36 PF02668 TauD: Taurine catabol 73.5 5.4 0.00012 30.0 3.9 37 88-132 220-258 (258)
37 cd00250 CAS_like Clavaminic ac 71.8 5.6 0.00012 30.7 3.7 42 85-134 216-260 (262)
38 COG4340 Uncharacterized protei 71.7 4.2 9.1E-05 31.0 2.8 55 61-123 143-201 (226)
39 PF03336 Pox_C4_C10: Poxvirus 70.7 7.1 0.00015 32.1 4.1 51 5-66 109-162 (339)
40 PF05721 PhyH: Phytanoyl-CoA d 68.9 4.6 0.0001 28.9 2.5 27 89-124 180-206 (211)
41 TIGR02408 ectoine_ThpD ectoine 57.1 36 0.00077 26.7 5.7 21 3-23 144-166 (277)
42 PF08489 DUF1743: Domain of un 39.3 10 0.00022 26.2 0.1 26 100-125 56-81 (118)
43 TIGR02410 carnitine_TMLD trime 38.2 52 0.0011 26.9 4.1 39 85-132 309-347 (362)
44 TIGR01762 chlorin-enz chlorina 36.8 34 0.00074 27.2 2.7 28 89-125 209-236 (288)
45 PF11191 DUF2782: Protein of u 35.5 71 0.0015 21.4 3.8 54 73-132 51-105 (105)
46 KOG3889|consensus 31.3 44 0.00095 27.3 2.4 24 88-119 319-342 (371)
47 PF06153 DUF970: Protein of un 31.2 13 0.00028 25.7 -0.5 13 72-84 87-99 (109)
48 COG3826 Uncharacterized protei 30.7 1E+02 0.0023 23.6 4.3 64 7-70 153-231 (236)
49 COG3751 EGL-9 Predicted prolin 29.3 1.5E+02 0.0033 23.4 5.2 69 2-77 161-243 (252)
50 TIGR02409 carnitine_bodg gamma 29.2 89 0.0019 25.5 4.1 36 87-130 312-349 (366)
51 PF07350 DUF1479: Protein of u 28.9 34 0.00074 29.0 1.6 32 93-133 324-355 (416)
52 PRK09553 tauD taurine dioxygen 26.9 53 0.0012 25.7 2.3 29 85-121 230-258 (277)
53 KOG3290|consensus 26.3 2E+02 0.0044 23.1 5.4 117 8-133 136-272 (286)
54 PF06415 iPGM_N: BPG-independe 23.1 50 0.0011 25.6 1.4 14 94-107 167-180 (223)
55 COG3870 Uncharacterized protei 22.8 28 0.0006 23.9 -0.0 13 72-84 87-99 (109)
56 PRK09965 3-phenylpropionate di 21.2 97 0.0021 20.4 2.4 43 72-123 8-51 (106)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=99.96 E-value=2.4e-30 Score=207.14 Aligned_cols=93 Identities=29% Similarity=0.545 Sum_probs=84.1
Q ss_pred ecccCccccccccCcCCccccCcccceeeeeccccccccCcccCCCC------------------ceEEecccCeEEEEE
Q psy6258 41 NAHANTLLDYWMYHSGCPVALGNKWGKLLLSGLTDVELGGATIFPSL------------------NLTVFPEKGSAVFWY 102 (136)
Q Consensus 41 n~~~~~h~D~~s~H~~~pv~~G~R~aT~l~~yLnd~~~GG~t~Fp~~------------------~~~v~p~~G~al~~~ 102 (136)
+++|+.|.|++..-. .....|+|++|+++ ||||+++||+|+||++ +++|+|+||+||+|+
T Consensus 142 Gq~Y~~H~D~~~~~~-~~~~gg~R~aTvL~-YLndv~~GGeT~FP~~~~~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~ 219 (310)
T PLN00052 142 GQKYEPHFDYFHDKI-NQALGGHRYATVLM-YLSTVDKGGETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFF 219 (310)
T ss_pred CCCCCCCCCcccccc-ccccCCceeEEEEE-EeccCCCCCceecCCcccccccccccchhhhhcCCeEeccCcceEEEEe
Confidence 678999999976421 12357899999999 9999999999999998 799999999999999
Q ss_pred ecCCCCCCCccceeccCccccCcEEEEEecccc
Q psy6258 103 NAHANTLLDYRMYHSGCPVALGNKWGKLLLSGV 135 (136)
Q Consensus 103 ~~~~~~~~d~~~~H~~~pv~~G~K~~~~~w~~~ 135 (136)
|+++||..|++|+|+||||++|+||++|+|+.+
T Consensus 220 nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~ 252 (310)
T PLN00052 220 SLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHI 252 (310)
T ss_pred ccCCCCCCCcccccCCCeeecCeEEEEEEeeec
Confidence 999999999999999999999999999999964
No 2
>KOG1591|consensus
Probab=99.95 E-value=8.3e-29 Score=196.39 Aligned_cols=94 Identities=37% Similarity=0.669 Sum_probs=86.1
Q ss_pred ecccCcccccccc---CcCCccccCcccceeeeeccccccccCcccCCCCce--EEecccCeEEEEEecCCCCCCCccce
Q psy6258 41 NAHANTLLDYWMY---HSGCPVALGNKWGKLLLSGLTDVELGGATIFPSLNL--TVFPEKGSAVFWYNAHANTLLDYRMY 115 (136)
Q Consensus 41 n~~~~~h~D~~s~---H~~~pv~~G~R~aT~l~~yLnd~~~GG~t~Fp~~~~--~v~p~~G~al~~~~~~~~~~~d~~~~ 115 (136)
+++|+.|.||+.. +...-...|+|++|+++ ||+++++||+|+||.++. +|+|+||+|++|+|+++|+..|++|.
T Consensus 186 Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~-yls~v~~GG~TvFP~~~~~~~V~PkkGdal~wfnl~~~~~~d~~S~ 264 (289)
T KOG1591|consen 186 GGHYEPHYDYFLPEEDETFNGLNGGNRIATVLM-YLSDVEQGGETVFPNLGMKPAVKPKKGDALFWFNLHPDGEGDPRSL 264 (289)
T ss_pred CccccccccccccccchhhhhcccCCcceeEEE-EecccCCCCcccCCCCCCcccccCCCCCeeEEEEccCCCCCCcccc
Confidence 6899999999864 11222368999999999 999999999999999999 99999999999999999999999999
Q ss_pred eccCccccCcEEEEEecccc
Q psy6258 116 HSGCPVALGNKWGKLLLSGV 135 (136)
Q Consensus 116 H~~~pv~~G~K~~~~~w~~~ 135 (136)
|++|||+.|+||++|+|+.+
T Consensus 265 H~~CPv~~G~kw~~~~wi~~ 284 (289)
T KOG1591|consen 265 HGGCPVLVGSKWIATKWIHE 284 (289)
T ss_pred ccCCCeeeccceeeeeeeee
Confidence 99999999999999999975
No 3
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=99.84 E-value=1.7e-21 Score=156.21 Aligned_cols=75 Identities=32% Similarity=0.548 Sum_probs=68.6
Q ss_pred ccceEEeeeecCCCCCCeeecCCC------------------CceecccccceeEeeecccCccccccccCcCCccccCc
Q psy6258 2 NRAEMSSVELTDVELGGATIFPSL------------------NLTVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVALGN 63 (136)
Q Consensus 2 ~R~~T~~iyLnd~~~GG~T~Fp~l------------------~l~v~p~kG~al~~~n~~~~~h~D~~s~H~~~pv~~G~ 63 (136)
||++|+++||||+++||+|.||++ +++|+|+||+||+|+|.+.++..|..++|++|||..|.
T Consensus 163 ~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~ 242 (310)
T PLN00052 163 HRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGE 242 (310)
T ss_pred ceeEEEEEEeccCCCCCceecCCcccccccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCe
Confidence 799999999999999999999998 69999999999999999999999999999999999999
Q ss_pred ccceeeeeccccc
Q psy6258 64 KWGKLLLSGLTDV 76 (136)
Q Consensus 64 R~aT~l~~yLnd~ 76 (136)
||+...|++.+..
T Consensus 243 Kw~atkWi~~~~~ 255 (310)
T PLN00052 243 KWSAPKWIHIRSY 255 (310)
T ss_pred EEEEEEeeecccc
Confidence 9977666355443
No 4
>KOG1591|consensus
Probab=99.81 E-value=2.3e-20 Score=148.20 Aligned_cols=74 Identities=41% Similarity=0.698 Sum_probs=68.9
Q ss_pred ccceEEeeeecCCCCCCeeecCCCCc--eecccccceeEeeecccCccccccccCcCCccccCcccceeeeecccc
Q psy6258 2 NRAEMSSVELTDVELGGATIFPSLNL--TVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVALGNKWGKLLLSGLTD 75 (136)
Q Consensus 2 ~R~~T~~iyLnd~~~GG~T~Fp~l~l--~v~p~kG~al~~~n~~~~~h~D~~s~H~~~pv~~G~R~aT~l~~yLnd 75 (136)
||+||+++||+|+++||+|+||.+++ +|+|+||+|++|+|.+.++..|.+|.|++||+..|+||..+.|++.++
T Consensus 211 ~RiaT~l~yls~v~~GG~TvFP~~~~~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi~~~~ 286 (289)
T KOG1591|consen 211 NRIATVLMYLSDVEQGGETVFPNLGMKPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWIHEKN 286 (289)
T ss_pred CcceeEEEEecccCCCCcccCCCCCCcccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeeeeecc
Confidence 79999999999999999999999999 999999999999999999999999999999999999987766636543
No 5
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.76 E-value=9.3e-19 Score=129.25 Aligned_cols=81 Identities=35% Similarity=0.581 Sum_probs=67.9
Q ss_pred cccCccccccccCcCCccccCcccceeeeeccccccccCcccCCCCce----EEecccCeEEEEEecCCCCCCCccceec
Q psy6258 42 AHANTLLDYWMYHSGCPVALGNKWGKLLLSGLTDVELGGATIFPSLNL----TVFPEKGSAVFWYNAHANTLLDYRMYHS 117 (136)
Q Consensus 42 ~~~~~h~D~~s~H~~~pv~~G~R~aT~l~~yLnd~~~GG~t~Fp~~~~----~v~p~~G~al~~~~~~~~~~~d~~~~H~ 117 (136)
+++..|.|..... ..++|.+|+++ |||++++||+|.||..+. +|+|++|++|+|++.. .++.|+
T Consensus 94 ~~~~~H~D~~~~~-----~~~~r~~T~~~-yLn~~~~GG~~~f~~~~~~~~~~v~P~~G~~v~f~~~~------~~~~H~ 161 (178)
T smart00702 94 GHYGPHVDNFEDD-----ENGDRIATFLL-YLNDVEEGGELVFPGLGLMVCATVKPKKGDLLFFPSGR------GRSLHG 161 (178)
T ss_pred CcccCcCCCCCCC-----CCCCeEEEEEE-EeccCCcCceEEecCCCCccceEEeCCCCcEEEEeCCC------CCcccc
Confidence 4445555553322 12689999999 999999999999999988 9999999999999853 389999
Q ss_pred cCccccCcEEEEEeccc
Q psy6258 118 GCPVALGNKWGKLLLSG 134 (136)
Q Consensus 118 ~~pv~~G~K~~~~~w~~ 134 (136)
+|||.+|+||++++|+.
T Consensus 162 v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 162 VCPVTRGSRWAITGWIR 178 (178)
T ss_pred CCcceeCCEEEEEEEEC
Confidence 99999999999999974
No 6
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.47 E-value=6.8e-14 Score=103.20 Aligned_cols=63 Identities=37% Similarity=0.652 Sum_probs=57.9
Q ss_pred ccceEEeeeecCCCCCCeeecCCCCc----eecccccceeEeeecccCccccccccCcCCccccCcccceeee
Q psy6258 2 NRAEMSSVELTDVELGGATIFPSLNL----TVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVALGNKWGKLLL 70 (136)
Q Consensus 2 ~R~~T~~iyLnd~~~GG~T~Fp~l~l----~v~p~kG~al~~~n~~~~~h~D~~s~H~~~pv~~G~R~aT~l~ 70 (136)
+|.+|+++||||++.||+|.||..+. +|+|++|++++|++.+. .+.|++||+.+|.|++...|
T Consensus 110 ~r~~T~~~yLn~~~~GG~~~f~~~~~~~~~~v~P~~G~~v~f~~~~~------~~~H~v~pv~~G~r~~~~~W 176 (178)
T smart00702 110 DRIATFLLYLNDVEEGGELVFPGLGLMVCATVKPKKGDLLFFPSGRG------RSLHGVCPVTRGSRWAITGW 176 (178)
T ss_pred CeEEEEEEEeccCCcCceEEecCCCCccceEEeCCCCcEEEEeCCCC------CccccCCcceeCCEEEEEEE
Confidence 79999999999999999999999988 99999999999997632 67999999999999988777
No 7
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.45 E-value=1.6e-13 Score=105.96 Aligned_cols=83 Identities=16% Similarity=0.072 Sum_probs=63.1
Q ss_pred ecccCccccccccCcCCccccC-cccceeeeecccccc--ccCcccCCCC--ceEEecccCeEEEEEecCCCCCCCccce
Q psy6258 41 NAHANTLLDYWMYHSGCPVALG-NKWGKLLLSGLTDVE--LGGATIFPSL--NLTVFPEKGSAVFWYNAHANTLLDYRMY 115 (136)
Q Consensus 41 n~~~~~h~D~~s~H~~~pv~~G-~R~aT~l~~yLnd~~--~GG~t~Fp~~--~~~v~p~~G~al~~~~~~~~~~~d~~~~ 115 (136)
++++..|.|.......- ...+ .+..|+.+ |||+++ +||||.|+.. ..+|+|++|++|+|++ .++
T Consensus 90 G~~y~~H~D~~~~~~~~-~~~~~rs~lS~~l-yLnd~~~yeGGEl~~~~~~g~~~Vkp~aG~~vlfps---------~~l 158 (226)
T PRK05467 90 GMSYGFHVDNAVRSLPG-TGGRVRTDLSATL-FLSDPDDYDGGELVIEDTYGEHRVKLPAGDLVLYPS---------TSL 158 (226)
T ss_pred CCccCccccCCcccCCC-CCcceeEEEEEEE-EeCCCCCCcCCceEEecCCCcEEEecCCCeEEEECC---------CCc
Confidence 45566666664332100 0011 23578888 999876 7999999864 5899999999999997 599
Q ss_pred eccCccccCcEEEEEeccc
Q psy6258 116 HSGCPVALGNKWGKLLLSG 134 (136)
Q Consensus 116 H~~~pv~~G~K~~~~~w~~ 134 (136)
|+++||.+|+||+++.|+.
T Consensus 159 H~v~pVt~G~R~~~~~Wi~ 177 (226)
T PRK05467 159 HRVTPVTRGVRVASFFWIQ 177 (226)
T ss_pred eeeeeccCccEEEEEecHH
Confidence 9999999999999999985
No 8
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=98.93 E-value=1.2e-09 Score=73.17 Aligned_cols=74 Identities=24% Similarity=0.290 Sum_probs=54.9
Q ss_pred ccccCcCCccccCcccceeeeecccccc---ccCcccCCC------CceEEe-----cccCeEEEEEecCCCCCCCccce
Q psy6258 50 YWMYHSGCPVALGNKWGKLLLSGLTDVE---LGGATIFPS------LNLTVF-----PEKGSAVFWYNAHANTLLDYRMY 115 (136)
Q Consensus 50 ~~s~H~~~pv~~G~R~aT~l~~yLnd~~---~GG~t~Fp~------~~~~v~-----p~~G~al~~~~~~~~~~~d~~~~ 115 (136)
+...|.+... ...+..|.++ |||+.+ +||+|.|.. ....+. |+.|++++|.+ .+++
T Consensus 11 ~~~~H~D~~~-~~~~~~t~ll-yL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~--------~~~~ 80 (100)
T PF13640_consen 11 FFGPHTDNSY-DPHRRVTLLL-YLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPS--------DNSL 80 (100)
T ss_dssp EEEEEESSSC-CCSEEEEEEE-ESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEES--------CTCE
T ss_pred EEeeeECCCC-CCcceEEEEE-EECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeC--------CCCe
Confidence 3344544321 4567889999 999887 999999985 234555 99999999987 4799
Q ss_pred eccCcc-ccCcEEEEEecc
Q psy6258 116 HSGCPV-ALGNKWGKLLLS 133 (136)
Q Consensus 116 H~~~pv-~~G~K~~~~~w~ 133 (136)
|+..|| ..|.+++++.|+
T Consensus 81 H~v~~v~~~~~R~~l~~~~ 99 (100)
T PF13640_consen 81 HGVTPVGEGGRRYSLTFWF 99 (100)
T ss_dssp EEEEEE-EESEEEEEEEEE
T ss_pred ecCcccCCCCCEEEEEEEE
Confidence 999999 889999999997
No 9
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=98.84 E-value=3.1e-09 Score=82.14 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=52.9
Q ss_pred ccceEEeeeecCCC--CCCeeecCCC--CceecccccceeEeeecccCccccccccCcCCccccCcccceeee
Q psy6258 2 NRAEMSSVELTDVE--LGGATIFPSL--NLTVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVALGNKWGKLLL 70 (136)
Q Consensus 2 ~R~~T~~iyLnd~~--~GG~T~Fp~l--~l~v~p~kG~al~~~n~~~~~h~D~~s~H~~~pv~~G~R~aT~l~ 70 (136)
+|..|+++||||++ +||+|.|+.. ..+|+|++|++++|++. ++|.++||..|.|++.+.|
T Consensus 112 rs~lS~~lyLnd~~~yeGGEl~~~~~~g~~~Vkp~aG~~vlfps~---------~lH~v~pVt~G~R~~~~~W 175 (226)
T PRK05467 112 RTDLSATLFLSDPDDYDGGELVIEDTYGEHRVKLPAGDLVLYPST---------SLHRVTPVTRGVRVASFFW 175 (226)
T ss_pred eEEEEEEEEeCCCCCCcCCceEEecCCCcEEEecCCCeEEEECCC---------CceeeeeccCccEEEEEec
Confidence 45788999999876 6999999865 48999999999999863 6899999999999999887
No 10
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=98.78 E-value=7.4e-09 Score=85.17 Aligned_cols=71 Identities=28% Similarity=0.286 Sum_probs=56.4
Q ss_pred cccccCcC-CccccCcc-cceeeeeccccccccCcccCCC-CceEEecccCeEEEEEecCCCCCCCccceeccCccccCc
Q psy6258 49 DYWMYHSG-CPVALGNK-WGKLLLSGLTDVELGGATIFPS-LNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGN 125 (136)
Q Consensus 49 D~~s~H~~-~pv~~G~R-~aT~l~~yLnd~~~GG~t~Fp~-~~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~G~ 125 (136)
|++..|.+ +....+++ ..|+++ |||++++||+|.|.. -..+|+|++| |+|. ....|.|++|.+|.
T Consensus 114 q~F~~H~Dg~~~rs~e~s~~tLLL-YLNd~~~GGET~f~~~~~~sI~pksg--LLFd---------h~l~Heg~~V~sG~ 181 (418)
T PHA02869 114 DYFARHRDFSTVFSKNIICVHLLL-YLEQPETGGETVIYIDNNTSVKLKTD--HLFD---------KTIEHESITVESGR 181 (418)
T ss_pred CcccccccCceecCCCEEEEEEEE-EEeccCCCCceEEEeCCCceEecCCC--eEec---------cccccCCcEeecCe
Confidence 45555532 33344565 578899 999999999999986 5688999999 7775 58999999999999
Q ss_pred EEEEEe
Q psy6258 126 KWGKLL 131 (136)
Q Consensus 126 K~~~~~ 131 (136)
|+|+..
T Consensus 182 KyVart 187 (418)
T PHA02869 182 KCVALF 187 (418)
T ss_pred EEEEEE
Confidence 999863
No 11
>PHA02813 hypothetical protein; Provisional
Probab=98.63 E-value=3.3e-08 Score=80.23 Aligned_cols=55 Identities=22% Similarity=0.147 Sum_probs=47.6
Q ss_pred ccceeeeeccccccccCcccCCCCc-eEEecccCeEEEEEecCCCCCCCccceeccCccccCcEEEEE
Q psy6258 64 KWGKLLLSGLTDVELGGATIFPSLN-LTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKL 130 (136)
Q Consensus 64 R~aT~l~~yLnd~~~GG~t~Fp~~~-~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~G~K~~~~ 130 (136)
...|+++ |||++++||+|.|..-+ -+|+ .|++|+|. ....|.|+||.+|.|+|+-
T Consensus 122 s~~tLLL-YLN~~~~GGeT~f~~~~~tsI~--~g~dlLFd---------h~l~Heg~~V~sG~KyVa~ 177 (354)
T PHA02813 122 YCYHLVL-YLNNTSKGGNTNIHIKDNTIFS--TKNDVLFD---------KTLNHSSDIITDGEKNIAL 177 (354)
T ss_pred eEEEEEE-EEeccCCCCceEEEcCCCceEe--ecceEEEe---------cccccCCcEeccCeEEEEE
Confidence 5678999 99999999999998652 3455 99999996 4899999999999999875
No 12
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=98.26 E-value=9.7e-07 Score=58.95 Aligned_cols=61 Identities=25% Similarity=0.296 Sum_probs=45.2
Q ss_pred ccceEEeeeecCCC---CCCeeecCC------CCceec-----ccccceeEeeecccCccccccccCcCCcc-ccCcccc
Q psy6258 2 NRAEMSSVELTDVE---LGGATIFPS------LNLTVF-----PEKGSAVFWHNAHANTLLDYWMYHSGCPV-ALGNKWG 66 (136)
Q Consensus 2 ~R~~T~~iyLnd~~---~GG~T~Fp~------l~l~v~-----p~kG~al~~~n~~~~~h~D~~s~H~~~pv-~~G~R~a 66 (136)
.|..|+++|||+.+ .||+|.|.. ....+. |+.|++++|.+ ..+.|+..|+ ..+.|++
T Consensus 23 ~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~--------~~~~H~v~~v~~~~~R~~ 94 (100)
T PF13640_consen 23 HRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPS--------DNSLHGVTPVGEGGRRYS 94 (100)
T ss_dssp SEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEES--------CTCEEEEEEE-EESEEEE
T ss_pred cceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeC--------CCCeecCcccCCCCCEEE
Confidence 57899999999887 899999885 234444 99999999987 1469999999 7888877
Q ss_pred eeee
Q psy6258 67 KLLL 70 (136)
Q Consensus 67 T~l~ 70 (136)
...|
T Consensus 95 l~~~ 98 (100)
T PF13640_consen 95 LTFW 98 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 13
>PHA02813 hypothetical protein; Provisional
Probab=97.66 E-value=5.5e-05 Score=61.68 Aligned_cols=52 Identities=17% Similarity=0.090 Sum_probs=42.1
Q ss_pred eEEeeeecCCCCCCeeecCCCCc-eecccccceeEeeecccCccccccccCcCCccccCcccce
Q psy6258 5 EMSSVELTDVELGGATIFPSLNL-TVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVALGNKWGK 67 (136)
Q Consensus 5 ~T~~iyLnd~~~GG~T~Fp~l~l-~v~p~kG~al~~~n~~~~~h~D~~s~H~~~pv~~G~R~aT 67 (136)
.|+++|||++++||+|.|..-+. ++. .|++++|.. ...|.+++|.+|.|++.
T Consensus 124 ~tLLLYLN~~~~GGeT~f~~~~~tsI~--~g~dlLFdh---------~l~Heg~~V~sG~KyVa 176 (354)
T PHA02813 124 YHLVLYLNNTSKGGNTNIHIKDNTIFS--TKNDVLFDK---------TLNHSSDIITDGEKNIA 176 (354)
T ss_pred EEEEEEEeccCCCCceEEEcCCCceEe--ecceEEEec---------ccccCCcEeccCeEEEE
Confidence 58999999999999999987633 343 889998843 45899999999999644
No 14
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=97.63 E-value=6.3e-05 Score=62.31 Aligned_cols=50 Identities=22% Similarity=0.177 Sum_probs=42.1
Q ss_pred eEEeeeecCCCCCCeeecCC-CCceecccccceeEeeecccCccccccccCcCCccccCccc
Q psy6258 5 EMSSVELTDVELGGATIFPS-LNLTVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVALGNKW 65 (136)
Q Consensus 5 ~T~~iyLnd~~~GG~T~Fp~-l~l~v~p~kG~al~~~n~~~~~h~D~~s~H~~~pv~~G~R~ 65 (136)
.|+++|||++++||+|.|.. -+.+|.|++| ++|. ....|.+++|.+|.|+
T Consensus 133 ~tLLLYLNd~~~GGET~f~~~~~~sI~pksg--LLFd---------h~l~Heg~~V~sG~Ky 183 (418)
T PHA02869 133 VHLLLYLEQPETGGETVIYIDNNTSVKLKTD--HLFD---------KTIEHESITVESGRKC 183 (418)
T ss_pred EEEEEEEeccCCCCceEEEeCCCceEecCCC--eEec---------cccccCCcEeecCeEE
Confidence 48999999999999999987 4688999999 6653 2458999999999994
No 15
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=96.46 E-value=0.0071 Score=45.87 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=47.5
Q ss_pred cccccc--ccCcccCCC--CceEEecccCeEEEEEecCCCCCCCccceeccCccccCcEEEEEeccc
Q psy6258 72 GLTDVE--LGGATIFPS--LNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLSG 134 (136)
Q Consensus 72 yLnd~~--~GG~t~Fp~--~~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~G~K~~~~~w~~ 134 (136)
+++|++ .||+-+.-+ -+..||=..|++++|++ .|+|...||..|+.+..-.|+.
T Consensus 123 fl~DPedYdGGeLVv~dtYg~h~VklPAGdLVlypS---------tSlH~VtPVTRg~R~asffW~q 180 (229)
T COG3128 123 FLSDPEDYDGGELVVNDTYGNHRVKLPAGDLVLYPS---------TSLHEVTPVTRGERFASFFWIQ 180 (229)
T ss_pred ecCCccccCCceEEEeccccceEEeccCCCEEEccc---------ccceeccccccCceEEEeeehH
Confidence 688887 699988844 47889988999999987 6999999999999999999985
No 16
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=95.54 E-value=0.017 Score=38.08 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=38.1
Q ss_pred cccceeeeeccccccccCcccCCCCc--eEEecccCeEEE-EEecC--CCCCCCccceeccCccccCcEEEEEeccc
Q psy6258 63 NKWGKLLLSGLTDVELGGATIFPSLN--LTVFPEKGSAVF-WYNAH--ANTLLDYRMYHSGCPVALGNKWGKLLLSG 134 (136)
Q Consensus 63 ~R~aT~l~~yLnd~~~GG~t~Fp~~~--~~v~p~~G~al~-~~~~~--~~~~~d~~~~H~~~pv~~G~K~~~~~w~~ 134 (136)
++++|+++ + +.+|+..|...+ +.|.|..+..++ +.+.. -.+.....+.|..||+.+|.++.++.|++
T Consensus 26 ~~~~Til~-~----~~~~gL~~~~~~~~~~v~~~~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 26 DGLLTILF-Q----DEVGGLQVRDDGEWVDVPPPPGGFIVNFGDALEILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp -SSEEEEE-E----TSTS-EEEEETTEEEE----TTCEEEEEBHHHHHHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred CCeEEEEe-c----ccchheeccccccccCccCccceeeeeceeeeecccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 46788887 5 777888887663 666666664433 33311 24566789999999999999999999974
No 17
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=95.08 E-value=0.034 Score=42.24 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=47.9
Q ss_pred EeeeecCCCC--CCeeecCCC--CceecccccceeEeeecccCccccccccCcCCccccCcccceeeeeccc
Q psy6258 7 SSVELTDVEL--GGATIFPSL--NLTVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVALGNKWGKLLLSGLT 74 (136)
Q Consensus 7 ~~iyLnd~~~--GG~T~Fp~l--~l~v~p~kG~al~~~n~~~~~h~D~~s~H~~~pv~~G~R~aT~l~~yLn 74 (136)
+-++|+|++. ||+-+.... +..|+-..|+.++|++. ++|.-.||..|.|++.++| |-.
T Consensus 120 ~tlfl~DPedYdGGeLVv~dtYg~h~VklPAGdLVlypSt---------SlH~VtPVTRg~R~asffW-~qs 181 (229)
T COG3128 120 CTLFLSDPEDYDGGELVVNDTYGNHRVKLPAGDLVLYPST---------SLHEVTPVTRGERFASFFW-IQS 181 (229)
T ss_pred eeeecCCccccCCceEEEeccccceEEeccCCCEEEcccc---------cceeccccccCceEEEeee-hHH
Confidence 5678999875 999876654 67788788999999863 6898899999999999999 743
No 18
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=94.75 E-value=0.029 Score=35.37 Aligned_cols=23 Identities=22% Similarity=0.145 Sum_probs=18.5
Q ss_pred ccceEEeeeec----CCCCCCeeecCC
Q psy6258 2 NRAEMSSVELT----DVELGGATIFPS 24 (136)
Q Consensus 2 ~R~~T~~iyLn----d~~~GG~T~Fp~ 24 (136)
+|..|++|||| +...||++.|+.
T Consensus 38 ~r~~t~llYLn~~w~~d~~Gg~~~f~~ 64 (70)
T PF13661_consen 38 RRFLTLLLYLNEDWDEDFGGGELFFDD 64 (70)
T ss_pred ceeEEEEEEecccccCccCCcEEEEeC
Confidence 68899999999 455588888865
No 19
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=94.21 E-value=0.16 Score=37.59 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=44.2
Q ss_pred cceeeeecccc-ccccCcccCCC-----CceEEecccCeEEEEEecCCCCCCCccceeccCcccc-----CcEEEE
Q psy6258 65 WGKLLLSGLTD-VELGGATIFPS-----LNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVAL-----GNKWGK 129 (136)
Q Consensus 65 ~aT~l~~yLnd-~~~GG~t~Fp~-----~~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~-----G~K~~~ 129 (136)
..++++ -+.. ...||.-++|. +|++|.|..|++|++-. ....|+-.||.. |+.+.+
T Consensus 99 ~~~~~~-t~~~gd~~~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~--------~~~~Hgvtpv~~~~~~~~~R~sl 165 (171)
T PF12851_consen 99 GYDVLC-TLGRGDYDGGRLELPGLDPNILGVAFAYQPGTVLIFCA--------KRELHGVTPVESPNRNHGTRISL 165 (171)
T ss_pred CeEEEE-ecCCccccCceEeccccccccCCEEEecCCCcEEEEcc--------cceeeecCcccCCCCCCCeEEEE
Confidence 345555 4433 37899999999 99999999999999865 469999999997 666654
No 20
>KOG3710|consensus
Probab=93.99 E-value=0.15 Score=39.93 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=49.3
Q ss_pred cccceeeeecccc---cc--ccCcccCCCCc---eEEecccCeEEEEEecCCCCCCCccceeccCccccCcEEEEEeccc
Q psy6258 63 NKWGKLLLSGLTD---VE--LGGATIFPSLN---LTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLSG 134 (136)
Q Consensus 63 ~R~aT~l~~yLnd---~~--~GG~t~Fp~~~---~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~G~K~~~~~w~~ 134 (136)
-|.+|.+. |||. +. -|+--.||.-. ..|.|+-+..|||++ |.+--|...|+. -.+|.++.|..
T Consensus 168 GRcITcIY-YlNqNWD~kv~Gg~Lri~pe~~~~~adieP~fdrLlffwS-------drrnPhev~Pa~-~tryaitvwyf 238 (280)
T KOG3710|consen 168 GRCITCIY-YLNQNWDVKVHGGILRIFPEGSTTFADIEPKFDRLLFFWS-------DRRNPHEVQPAY-ATRYAITVWYF 238 (280)
T ss_pred ceEEEEEE-EcccCcceeeccceeEeccCCCCcccccCcCCCeEEEEEe-------cCCCcccccccc-ccceEEEEEEe
Confidence 36788888 9996 22 35555777753 568899999999998 678889999999 46899999974
No 21
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=93.92 E-value=0.055 Score=44.26 Aligned_cols=70 Identities=24% Similarity=0.210 Sum_probs=46.1
Q ss_pred cccccCcCC-ccccC-cccceeeeeccccccccCcccCC---CCceEEecccCeEEEEEecCCCCCCCccceeccCcccc
Q psy6258 49 DYWMYHSGC-PVALG-NKWGKLLLSGLTDVELGGATIFP---SLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVAL 123 (136)
Q Consensus 49 D~~s~H~~~-pv~~G-~R~aT~l~~yLnd~~~GG~t~Fp---~~~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~ 123 (136)
|++..|... ..... ..-.++++ ||+.++.||+|.+- .-.--+++ .+-++| |....|.+.+|.+
T Consensus 90 d~f~~~~d~~~~~~~n~~~y~LvL-yL~~~~~GGktkiyi~~~~~tvI~~--~~DvLF---------dKsl~h~s~~V~~ 157 (339)
T PF03336_consen 90 DFFDNHRDFIKRDSKNCLEYHLVL-YLNNPENGGKTKIYIDPNDNTVIST--SEDVLF---------DKSLNHESIIVEE 157 (339)
T ss_pred cchhhhcccceeccCCceEEEEEE-EEeccCCCceEEEEECCCCceeeec--cccEEE---------eccccccceEecc
Confidence 555555531 11222 23567788 99999999999952 22212333 334555 5789999999999
Q ss_pred CcEEEEE
Q psy6258 124 GNKWGKL 130 (136)
Q Consensus 124 G~K~~~~ 130 (136)
|+|.||-
T Consensus 158 G~K~VAl 164 (339)
T PF03336_consen 158 GRKIVAL 164 (339)
T ss_pred CeEEEEE
Confidence 9999964
No 22
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=93.84 E-value=0.14 Score=37.99 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=55.5
Q ss_pred cccccccCcCCccccCccc--ceeeeecccccc---ccCcccCC----CC---ceEEecccCeEEEEEecCCC-----CC
Q psy6258 47 LLDYWMYHSGCPVALGNKW--GKLLLSGLTDVE---LGGATIFP----SL---NLTVFPEKGSAVFWYNAHAN-----TL 109 (136)
Q Consensus 47 h~D~~s~H~~~pv~~G~R~--aT~l~~yLnd~~---~GG~t~Fp----~~---~~~v~p~~G~al~~~~~~~~-----~~ 109 (136)
..||..+|.+. .|+.. .-+.+ .|++.. .|||-+.- +. ...+.+++|+|++|..-..- |-
T Consensus 71 ~gdyn~LHqdl---yGe~vFPlQvv~-lLs~Pg~DftGGEFVltEQrPR~QSR~~V~~L~qGda~if~t~~RPv~G~rG~ 146 (173)
T PF09859_consen 71 PGDYNCLHQDL---YGEHVFPLQVVI-LLSEPGEDFTGGEFVLTEQRPRMQSRAMVLPLRQGDALIFATNHRPVRGARGY 146 (173)
T ss_pred CCCccccccCC---CCCcccCeEEEE-EcCCCCCcccCceEEEEEecCCccCccccCCcCCCCEEEEecCCCCcCCCccc
Confidence 34777788664 45543 23334 577754 79998873 33 68899999999999765421 23
Q ss_pred CCccceeccCccccCcEEEEE
Q psy6258 110 LDYRMYHSGCPVALGNKWGKL 130 (136)
Q Consensus 110 ~d~~~~H~~~pv~~G~K~~~~ 130 (136)
......|+..+|.+|+.+.+-
T Consensus 147 yRv~~RHgVS~vrsG~R~tLg 167 (173)
T PF09859_consen 147 YRVNMRHGVSRVRSGERHTLG 167 (173)
T ss_pred eecccccccccccccceEEEE
Confidence 334689999999999988654
No 23
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=93.80 E-value=0.16 Score=33.92 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=17.8
Q ss_pred ceEEecccCeEEEEEecCCCCCCCccceeccCccccC
Q psy6258 88 NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 124 (136)
Q Consensus 88 ~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~G 124 (136)
...++|+.|+.++|++ ...|+..|-.+.
T Consensus 65 ~~~~~p~~G~lvlFPs---------~l~H~v~p~~~~ 92 (101)
T PF13759_consen 65 YYIVEPEEGDLVLFPS---------WLWHGVPPNNSD 92 (101)
T ss_dssp EEEE---TTEEEEEET---------TSEEEE----SS
T ss_pred eEEeCCCCCEEEEeCC---------CCEEeccCcCCC
Confidence 5789999999999997 788988887764
No 24
>PHA02866 Hypothetical protein; Provisional
Probab=93.35 E-value=0.079 Score=42.77 Aligned_cols=55 Identities=22% Similarity=0.076 Sum_probs=40.3
Q ss_pred cceeeeeccccccccCcccCCCCceEEecccCeEEEEEecCCCCCCCccceeccCccccCcEEEEE
Q psy6258 65 WGKLLLSGLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKL 130 (136)
Q Consensus 65 ~aT~l~~yLnd~~~GG~t~Fp~~~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~G~K~~~~ 130 (136)
-.++++ ||+.++.||+|.++--+.++--.+-+.| | |....|...-|.+|+|.||-
T Consensus 110 ~Y~LvL-yL~~p~~GGkt~iyv~~~t~i~~~~DvL-F---------DKsl~h~S~~V~~G~K~Val 164 (333)
T PHA02866 110 EYTLVL-HLSSPKNGGKTDVCVGDKTVISTADDFL-L---------EKRSEQLSNVVQEGEKIVVA 164 (333)
T ss_pred EEEEEE-EEeccccCCceEEEeCCCceEeecccee-e---------eccccccceeeecCcEEEEE
Confidence 356778 9999999999999743333322233333 3 67899999999999999874
No 25
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=92.96 E-value=0.32 Score=37.00 Aligned_cols=69 Identities=22% Similarity=0.188 Sum_probs=46.1
Q ss_pred EeeecccCccccccccCcCCccccCcccceeeeeccccccccCcccC--CCC-------------------ceEEecccC
Q psy6258 38 FWHNAHANTLLDYWMYHSGCPVALGNKWGKLLLSGLTDVELGGATIF--PSL-------------------NLTVFPEKG 96 (136)
Q Consensus 38 ~~~n~~~~~h~D~~s~H~~~pv~~G~R~aT~l~~yLnd~~~GG~t~F--p~~-------------------~~~v~p~~G 96 (136)
.|.|....+.....-.|.. -+.+-.. |++..+.+|...| |.. .+.|+|+.|
T Consensus 98 ~W~ni~~~Gg~h~~H~Hp~-------~~lSgvy-Yl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G 169 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLHPG-------SVISGTY-YVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEG 169 (201)
T ss_pred EeEEEcCCCCccCceECCC-------ceEEEEE-EEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCC
Confidence 6777665553333223332 2455556 8887777777766 332 235899999
Q ss_pred eEEEEEecCCCCCCCccceeccCcccc
Q psy6258 97 SAVFWYNAHANTLLDYRMYHSGCPVAL 123 (136)
Q Consensus 97 ~al~~~~~~~~~~~d~~~~H~~~pv~~ 123 (136)
+.++|++ ...|+..|...
T Consensus 170 ~lvlFPS---------~L~H~v~p~~~ 187 (201)
T TIGR02466 170 RVLLFES---------WLRHEVPPNES 187 (201)
T ss_pred eEEEECC---------CCceecCCCCC
Confidence 9999997 68898888875
No 26
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=92.47 E-value=0.26 Score=36.61 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=44.7
Q ss_pred EeeeecCCC---CCCeeecCCC-------CceecccccceeEeeecc-c-Cc-cccc--cccCcCCccccCcccceeee
Q psy6258 7 SSVELTDVE---LGGATIFPSL-------NLTVFPEKGSAVFWHNAH-A-NT-LLDY--WMYHSGCPVALGNKWGKLLL 70 (136)
Q Consensus 7 ~~iyLnd~~---~GG~T~Fp~l-------~l~v~p~kG~al~~~n~~-~-~~-h~D~--~s~H~~~pv~~G~R~aT~l~ 70 (136)
+.+-||+.. +|||.+.-.. ...+.+++|+|++|...+ + .+ ..+| ...|+-++|.+|+|...-++
T Consensus 91 vv~lLs~Pg~DftGGEFVltEQrPR~QSR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgli 169 (173)
T PF09859_consen 91 VVILLSEPGEDFTGGEFVLTEQRPRMQSRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLGLI 169 (173)
T ss_pred EEEEcCCCCCcccCceEEEEEecCCccCccccCCcCCCCEEEEecCCCCcCCCccceecccccccccccccceEEEEEE
Confidence 567788855 4999876433 588899999999996322 1 11 2233 34688889999999766555
No 27
>PHA02923 hypothetical protein; Provisional
Probab=91.63 E-value=0.21 Score=40.29 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=42.7
Q ss_pred ccceeeeeccccccccCcccCCCCceEEecccCeEEEEEecCCCCCCCccceeccCccccCcEEEEEe
Q psy6258 64 KWGKLLLSGLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLL 131 (136)
Q Consensus 64 R~aT~l~~yLnd~~~GG~t~Fp~~~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~G~K~~~~~ 131 (136)
+-..+++ ||+.++.||.|.++.-+-.++ -+-+ ++| |....|...-|.+|+|.||-.
T Consensus 87 ~~y~LvL-yL~~p~~GGt~i~~~~~t~i~-~~~D-vLF---------dKsl~h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 87 MGYYLVI-YLNRPKSGKTLIYPTPETVIT-SSED-IMF---------SKSLNFRFENVKRGYKLVMCS 142 (315)
T ss_pred eEEEEEE-EEeccCCCCeEEEecCCCeEe-eccc-eee---------ecccccceeeeecCcEEEEEE
Confidence 4456778 999999999999987663333 2233 333 678999999999999999865
No 28
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=90.25 E-value=0.18 Score=31.68 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=23.9
Q ss_pred cccccCcCCcc-c-cCcccceeeeeccc----cccccCcccCCC
Q psy6258 49 DYWMYHSGCPV-A-LGNKWGKLLLSGLT----DVELGGATIFPS 86 (136)
Q Consensus 49 D~~s~H~~~pv-~-~G~R~aT~l~~yLn----d~~~GG~t~Fp~ 86 (136)
|.+..|.+... . ...|..+.++ ||| +...||++.|+.
T Consensus 22 ~~~~~H~D~~~~~~~~~r~~t~ll-YLn~~w~~d~~Gg~~~f~~ 64 (70)
T PF13661_consen 22 DFFGWHVDADPSSSGKRRFLTLLL-YLNEDWDEDFGGGELFFDD 64 (70)
T ss_pred CEeeeeEcCCccccccceeEEEEE-EecccccCccCCcEEEEeC
Confidence 44455544432 1 2456889999 999 455688888865
No 29
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=88.90 E-value=0.63 Score=30.39 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=32.6
Q ss_pred ccceEEeeeecCCCCCCeeecCCCC--ceecccccceeEeeec-c--cCccccccccCcCCccccCcccceeee
Q psy6258 2 NRAEMSSVELTDVELGGATIFPSLN--LTVFPEKGSAVFWHNA-H--ANTLLDYWMYHSGCPVALGNKWGKLLL 70 (136)
Q Consensus 2 ~R~~T~~iyLnd~~~GG~T~Fp~l~--l~v~p~kG~al~~~n~-~--~~~h~D~~s~H~~~pv~~G~R~aT~l~ 70 (136)
+++.|++++ +.+|+..|+..+ +.+.+..+..++.... . -....+....|..++...+.|+....+
T Consensus 26 ~~~~Til~~----~~~~gL~~~~~~~~~~v~~~~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~~~~~R~s~~~f 95 (98)
T PF03171_consen 26 DGLLTILFQ----DEVGGLQVRDDGEWVDVPPPPGGFIVNFGDALEILTNGRYPATLHRVVPPTEGERYSLTFF 95 (98)
T ss_dssp -SSEEEEEE----TSTS-EEEEETTEEEE----TTCEEEEEBHHHHHHTTTSS----EEEE--STS-EEEEEEE
T ss_pred CCeEEEEec----ccchheeccccccccCccCccceeeeeceeeeecccCCccCCceeeeEcCCCCCEEEEEEE
Confidence 367899988 667777777653 5566666644433321 1 123345667899998888999877665
No 30
>KOG3710|consensus
Probab=87.33 E-value=1.8 Score=34.01 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=44.9
Q ss_pred cceEEeeeecC---CCC--CCeeecCCCC---ceecccccceeEeeecccCccccccccCcCCccccCcccceeeeeccc
Q psy6258 3 RAEMSSVELTD---VEL--GGATIFPSLN---LTVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVALGNKWGKLLLSGLT 74 (136)
Q Consensus 3 R~~T~~iyLnd---~~~--GG~T~Fp~l~---l~v~p~kG~al~~~n~~~~~h~D~~s~H~~~pv~~G~R~aT~l~~yLn 74 (136)
|-.|.+.|||. +.. |+--+||.-. ..+.|+-+..|||++.+ +..|..+|. .-.||+..+| |..
T Consensus 169 RcITcIYYlNqNWD~kv~Gg~Lri~pe~~~~~adieP~fdrLlffwSdr-------rnPhev~Pa-~~tryaitvw-yfd 239 (280)
T KOG3710|consen 169 RCITCIYYLNQNWDVKVHGGILRIFPEGSTTFADIEPKFDRLLFFWSDR-------RNPHEVQPA-YATRYAITVW-YFD 239 (280)
T ss_pred eEEEEEEEcccCcceeeccceeEeccCCCCcccccCcCCCeEEEEEecC-------CCccccccc-cccceEEEEE-Eec
Confidence 77899999996 333 4445888864 56788888999888744 445666663 3568888888 754
Q ss_pred c
Q psy6258 75 D 75 (136)
Q Consensus 75 d 75 (136)
.
T Consensus 240 a 240 (280)
T KOG3710|consen 240 A 240 (280)
T ss_pred c
Confidence 3
No 31
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=82.89 E-value=2.3 Score=33.55 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=20.0
Q ss_pred EecccCeEEEEEecCCCCCCCccceeccCccccC
Q psy6258 91 VFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 124 (136)
Q Consensus 91 v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~G 124 (136)
+.-++|++++|.. +++|++-|..+.
T Consensus 213 ~~~~aGDvl~f~~---------~~~H~S~~N~s~ 237 (277)
T TIGR02408 213 FTGKAGSAVWFDC---------NTMHGSGSNITP 237 (277)
T ss_pred eccCCceEEEEcc---------ccccCCCCCCCC
Confidence 4458899999975 789999888764
No 32
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=79.21 E-value=5.4 Score=31.54 Aligned_cols=67 Identities=22% Similarity=0.146 Sum_probs=47.3
Q ss_pred cCcccceeeeecccc---ccccCcc-cCCCC---------ceEEecccCeEEEEEecCCCCCCCccceeccCccc-cCcE
Q psy6258 61 LGNKWGKLLLSGLTD---VELGGAT-IFPSL---------NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVA-LGNK 126 (136)
Q Consensus 61 ~G~R~aT~l~~yLnd---~~~GG~t-~Fp~~---------~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~-~G~K 126 (136)
...|.++..+ |+++ .+-||+- .|+++ --++.|.=++.++|.... ..+.|...+|. +...
T Consensus 159 ~~~R~~~yv~-y~~r~wkpe~GGeL~l~~s~~~~~~~~~~~~ti~P~fn~lv~F~s~~------~Hs~h~V~~~~~~~~R 231 (252)
T COG3751 159 KDIRLATYVY-YLTREWKPEYGGELRLFHSLQKNNTAADSFKTIAPVFNSLVFFKSRP------SHSVHSVEEPYAAADR 231 (252)
T ss_pred ccceEEEEEe-ccCCCCCcCCCCceeecccccccccccccccccCCCCceEEEEEecC------Cccceeccccccccce
Confidence 5678899999 9998 4469998 78775 357888888877776521 23677666644 3677
Q ss_pred EEEEeccc
Q psy6258 127 WGKLLLSG 134 (136)
Q Consensus 127 ~~~~~w~~ 134 (136)
...+-|+.
T Consensus 232 lsV~GW~r 239 (252)
T COG3751 232 LSVTGWFR 239 (252)
T ss_pred EEEeeEEe
Confidence 77888864
No 33
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=79.07 E-value=6 Score=29.20 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=41.7
Q ss_pred eEEeeeecCC-CCCCeeecCC-----CCceecccccceeEeeecccCccccccccCcCCcccc-----Ccccceee
Q psy6258 5 EMSSVELTDV-ELGGATIFPS-----LNLTVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVAL-----GNKWGKLL 69 (136)
Q Consensus 5 ~T~~iyLnd~-~~GG~T~Fp~-----l~l~v~p~kG~al~~~n~~~~~h~D~~s~H~~~pv~~-----G~R~aT~l 69 (136)
.++++-+.-. ..||.-.+|. +++++.+..|+.|++... .-.|+-.|+.. |.|+....
T Consensus 100 ~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~~--------~~~Hgvtpv~~~~~~~~~R~slvf 167 (171)
T PF12851_consen 100 YDVLCTLGRGDYDGGRLELPGLDPNILGVAFAYQPGTVLIFCAK--------RELHGVTPVESPNRNHGTRISLVF 167 (171)
T ss_pred eEEEEecCCccccCceEeccccccccCCEEEecCCCcEEEEccc--------ceeeecCcccCCCCCCCeEEEEEE
Confidence 4555555443 7899999999 999999999999998643 23677777664 77765443
No 34
>PHA02866 Hypothetical protein; Provisional
Probab=78.13 E-value=3.6 Score=33.46 Aligned_cols=51 Identities=22% Similarity=0.098 Sum_probs=33.2
Q ss_pred eEEeeeecCCCCCCeeecCCCCceecccccceeEeeecccCccccccccCcCCccccCccc
Q psy6258 5 EMSSVELTDVELGGATIFPSLNLTVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVALGNKW 65 (136)
Q Consensus 5 ~T~~iyLnd~~~GG~T~Fp~l~l~v~p~kG~al~~~n~~~~~h~D~~s~H~~~pv~~G~R~ 65 (136)
..+++||+.++.||+|.++--+-++-..+-+- -.|....|...-|.+|.|.
T Consensus 111 Y~LvLyL~~p~~GGkt~iyv~~~t~i~~~~Dv----------LFDKsl~h~S~~V~~G~K~ 161 (333)
T PHA02866 111 YTLVLHLSSPKNGGKTDVCVGDKTVISTADDF----------LLEKRSEQLSNVVQEGEKI 161 (333)
T ss_pred EEEEEEEeccccCCceEEEeCCCceEeeccce----------eeeccccccceeeecCcEE
Confidence 46899999999999998773322222122222 2355667776667888883
No 35
>PHA02923 hypothetical protein; Provisional
Probab=76.15 E-value=4.3 Score=32.90 Aligned_cols=52 Identities=13% Similarity=0.071 Sum_probs=35.4
Q ss_pred eEEeeeecCCCCCCeeecCCCCceecccccceeEeeecccCccccccccCcCCccccCcccce
Q psy6258 5 EMSSVELTDVELGGATIFPSLNLTVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVALGNKWGK 67 (136)
Q Consensus 5 ~T~~iyLnd~~~GG~T~Fp~l~l~v~p~kG~al~~~n~~~~~h~D~~s~H~~~pv~~G~R~aT 67 (136)
..+++||+..+.||.+.++.-+-++. .+-+-| .|....|...-+.+|.|...
T Consensus 89 y~LvLyL~~p~~GGt~i~~~~~t~i~-~~~DvL----------FdKsl~h~s~~V~~G~K~VA 140 (315)
T PHA02923 89 YYLVIYLNRPKSGKTLIYPTPETVIT-SSEDIM----------FSKSLNFRFENVKRGYKLVM 140 (315)
T ss_pred EEEEEEEeccCCCCeEEEecCCCeEe-ecccee----------eecccccceeeeecCcEEEE
Confidence 35899999999999999987773332 232332 35555676666788888643
No 36
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=73.47 E-value=5.4 Score=30.04 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=28.0
Q ss_pred ceEEecccCeEEEEEecCCCCCCCccceeccCcc--ccCcEEEEEec
Q psy6258 88 NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPV--ALGNKWGKLLL 132 (136)
Q Consensus 88 ~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv--~~G~K~~~~~w 132 (136)
.++++=++|+.++|.| .+.+|+..+. -.|..++...|
T Consensus 220 ~~~~~~~~GDlli~dN--------~~~lHgR~~~~~~~~~R~L~R~~ 258 (258)
T PF02668_consen 220 TYRHRWQPGDLLIWDN--------HRVLHGRTAFDDPDGDRHLLRVW 258 (258)
T ss_dssp EEEEE--TTEEEEEET--------TTEEEEE--E-STTSSEEEEEEE
T ss_pred cccccCCCceEEEEcC--------CeeEecCCCCCCCCCCEEEEEeC
Confidence 5778888999999998 5899999999 56788887776
No 37
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=71.79 E-value=5.6 Score=30.69 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=33.8
Q ss_pred CCCceEEecccCeEEEEEecCCCCCCCccceeccCcccc---CcEEEEEeccc
Q psy6258 85 PSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVAL---GNKWGKLLLSG 134 (136)
Q Consensus 85 p~~~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~---G~K~~~~~w~~ 134 (136)
|...++++-++|+.++|.| .+++|+..+-.. +..|....|+.
T Consensus 216 ~~~~~~~~l~~Gdivi~DN--------~r~lHgR~~f~~~~~~~R~L~r~~i~ 260 (262)
T cd00250 216 PDNQLTVKLEPGDLLIFDN--------RRVLHGRTAFSPRYGGDRWLKGCYVD 260 (262)
T ss_pred hhhEEEEEcCCCCEEEEec--------hhhhcCCCCCCCCCCCceEEEEEEec
Confidence 3346888999999999998 589999988664 56888888864
No 38
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.69 E-value=4.2 Score=31.03 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=39.1
Q ss_pred cCcccceeeeeccccccccCcccCCCCceEEecccCeEEEEEecCCCCCC----CccceeccCcccc
Q psy6258 61 LGNKWGKLLLSGLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLL----DYRMYHSGCPVAL 123 (136)
Q Consensus 61 ~G~R~aT~l~~yLnd~~~GG~t~Fp~~~~~v~p~~G~al~~~~~~~~~~~----d~~~~H~~~pv~~ 123 (136)
.|.-|+.++. --+.--.||+|.. .-.+|.+.+|+.+.++|+. |.+.+|..||+.-
T Consensus 143 DG~D~I~I~~-vDR~NI~gGet~l-------Y~~~~~~p~f~kvl~pGe~~~l~Dh~~~H~~tpi~p 201 (226)
T COG4340 143 DGVDWIIIML-VDRQNIDGGETDL-------YAPDGASPGFFKVLAPGEAVFLDDHRVLHGVTPIVP 201 (226)
T ss_pred cCccEEEEEE-eeeccccCceEEE-------EccCCCCcceEEeccCCcEEEeccchhcccccceec
Confidence 4555666555 4455557998865 3446677888888888743 7899999999874
No 39
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=70.68 E-value=7.1 Score=32.14 Aligned_cols=51 Identities=24% Similarity=0.173 Sum_probs=32.9
Q ss_pred eEEeeeecCCCCCCeeecC---CCCceecccccceeEeeecccCccccccccCcCCccccCcccc
Q psy6258 5 EMSSVELTDVELGGATIFP---SLNLTVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVALGNKWG 66 (136)
Q Consensus 5 ~T~~iyLnd~~~GG~T~Fp---~l~l~v~p~kG~al~~~n~~~~~h~D~~s~H~~~pv~~G~R~a 66 (136)
.++++||+.++.||+|.+- .-+-.+. ...+--.|....|...+|.+|.|.+
T Consensus 109 y~LvLyL~~~~~GGktkiyi~~~~~tvI~-----------~~~DvLFdKsl~h~s~~V~~G~K~V 162 (339)
T PF03336_consen 109 YHLVLYLNNPENGGKTKIYIDPNDNTVIS-----------TSEDVLFDKSLNHESIIVEEGRKIV 162 (339)
T ss_pred EEEEEEEeccCCCceEEEEECCCCceeee-----------ccccEEEeccccccceEeccCeEEE
Confidence 4689999999999999642 1121121 1122223555678888889999865
No 40
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=68.91 E-value=4.6 Score=28.86 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=20.1
Q ss_pred eEEecccCeEEEEEecCCCCCCCccceeccCccccC
Q psy6258 89 LTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 124 (136)
Q Consensus 89 ~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~G 124 (136)
+.+..++|++|+|.. +++|++-|..+.
T Consensus 180 ~~~~~~~Gdvl~~~~---------~~~H~s~~N~s~ 206 (211)
T PF05721_consen 180 VPVPMKAGDVLFFHS---------RLIHGSGPNTSD 206 (211)
T ss_dssp EEE-BSTTEEEEEET---------TSEEEEE-B-SS
T ss_pred EEeecCCCeEEEEcC---------CccccCCCCCCc
Confidence 577789999999974 899999987754
No 41
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=57.11 E-value=36 Score=26.73 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=14.5
Q ss_pred cceEEeeeecCCCC--CCeeecC
Q psy6258 3 RAEMSSVELTDVEL--GGATIFP 23 (136)
Q Consensus 3 R~~T~~iyLnd~~~--GG~T~Fp 23 (136)
+..|+.++|.|+.. |+-.+.|
T Consensus 144 ~~vt~wiaLdD~t~eNG~l~vIP 166 (277)
T TIGR02408 144 RAVSCSIALTDNNETNGPLMLVP 166 (277)
T ss_pred CeEEEEEEcccCCCCCCCEEEec
Confidence 46799999999775 4333444
No 42
>PF08489 DUF1743: Domain of unknown function (DUF1743); InterPro: IPR013696 This domain of unknown function is found in many hypothetical proteins and predicted DNA-binding proteins such as transcription-associated proteins. It is found in bacteria and archaea. ; PDB: 3AU7_A 3AMU_A 3AMT_A 3U02_D.
Probab=39.33 E-value=10 Score=26.22 Aligned_cols=26 Identities=19% Similarity=0.018 Sum_probs=14.3
Q ss_pred EEEecCCCCCCCccceeccCccccCc
Q psy6258 100 FWYNAHANTLLDYRMYHSGCPVALGN 125 (136)
Q Consensus 100 ~~~~~~~~~~~d~~~~H~~~pv~~G~ 125 (136)
.|.|.+........+-|++|||+.|-
T Consensus 56 t~~~vd~~~~~~~isp~t~~pVl~Gi 81 (118)
T PF08489_consen 56 TFDNVDYANKRVTISPHTPDPVLYGI 81 (118)
T ss_dssp ECTSEBTTTTCECCS--TTSSEEEEE
T ss_pred HHHHHHHhcceeeecCCCCCceEEec
Confidence 44555444444456778888887764
No 43
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=38.19 E-value=52 Score=26.91 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=30.4
Q ss_pred CCCceEEecccCeEEEEEecCCCCCCCccceeccCccccCcEEEEEec
Q psy6258 85 PSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLL 132 (136)
Q Consensus 85 p~~~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~G~K~~~~~w 132 (136)
|+..+.++=++|+.++|.| .+++|+...-. |..|..-.+
T Consensus 309 p~~~~~~~l~pGd~vi~DN--------~rvLHgRtaf~-g~R~L~G~Y 347 (362)
T TIGR02410 309 PDNEIEFKLRPGTVLIFDN--------WRVLHSRTSFT-GYRRMCGCY 347 (362)
T ss_pred hhcEEEEEcCCccEEEEee--------EEEeecCCCcC-CceEEEEEE
Confidence 3346788888999999999 58999998875 777765443
No 44
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=36.85 E-value=34 Score=27.21 Aligned_cols=28 Identities=11% Similarity=0.336 Sum_probs=22.6
Q ss_pred eEEecccCeEEEEEecCCCCCCCccceeccCccccCc
Q psy6258 89 LTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGN 125 (136)
Q Consensus 89 ~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~G~ 125 (136)
+.+.-++|++++|.. +++|++.|..+..
T Consensus 209 v~~~lkaGd~~~f~~---------~t~HgS~~N~S~~ 236 (288)
T TIGR01762 209 VPMQMKAGQFIIFWS---------TLMHASYPNSGES 236 (288)
T ss_pred eeeeeCCceEEEECC---------CceecCCCCCCCC
Confidence 455668899999964 8999999998854
No 45
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=35.53 E-value=71 Score=21.42 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=30.5
Q ss_pred cccccccCcccCCCCceEEecccCeEEEEEecCCCCCCCccceec-cCccccCcEEEEEec
Q psy6258 73 LTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHS-GCPVALGNKWGKLLL 132 (136)
Q Consensus 73 Lnd~~~GG~t~Fp~~~~~v~p~~G~al~~~~~~~~~~~d~~~~H~-~~pv~~G~K~~~~~w 132 (136)
..+...+|.+.= ++|+|+.|. =|+-+.++|..+...... .-+-..--.|+.-.|
T Consensus 51 ieEyRv~G~l~~----IkV~P~~G~--~Yyl~d~dg~g~~~~~~~~~~~~~~~p~W~i~~w 105 (105)
T PF11191_consen 51 IEEYRVNGQLYM----IKVQPKAGP--PYYLVDPDGDGNFSRSDANSDSDVSPPQWVIFSW 105 (105)
T ss_pred EEEEEECCeEee----EEEEeCCCC--CEEEECCCCCCcccccccccCCCCCCcEEEEeeC
Confidence 345556776654 899999993 333444555433322222 333444567877766
No 46
>KOG3889|consensus
Probab=31.29 E-value=44 Score=27.26 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.1
Q ss_pred ceEEecccCeEEEEEecCCCCCCCccceeccC
Q psy6258 88 NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGC 119 (136)
Q Consensus 88 ~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~ 119 (136)
.+.|+-+.|+.+|+.| +|.+|+-.
T Consensus 319 ~~~ikL~PGsvifiDN--------wRvLHgRe 342 (371)
T KOG3889|consen 319 SIEIKLRPGSVIFIDN--------WRVLHGRE 342 (371)
T ss_pred eEEEEecCceEEEEec--------eeEecCcc
Confidence 6889999999999988 68888643
No 47
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=31.20 E-value=13 Score=25.72 Aligned_cols=13 Identities=54% Similarity=0.856 Sum_probs=8.0
Q ss_pred ccccccccCcccC
Q psy6258 72 GLTDVELGGATIF 84 (136)
Q Consensus 72 yLnd~~~GG~t~F 84 (136)
+.-+++.||+|+|
T Consensus 87 ~pveV~vGGATVF 99 (109)
T PF06153_consen 87 YPVEVEVGGATVF 99 (109)
T ss_dssp --EEEEE--EEEE
T ss_pred cceEEEEcccEEE
Confidence 4558899999999
No 48
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.71 E-value=1e+02 Score=23.57 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=38.7
Q ss_pred EeeeecCCCC---CCeeecCC----C---CceecccccceeEeeec-c-c---CccccccccCcCCccccCcccceeee
Q psy6258 7 SSVELTDVEL---GGATIFPS----L---NLTVFPEKGSAVFWHNA-H-A---NTLLDYWMYHSGCPVALGNKWGKLLL 70 (136)
Q Consensus 7 ~~iyLnd~~~---GG~T~Fp~----l---~l~v~p~kG~al~~~n~-~-~---~~h~D~~s~H~~~pv~~G~R~aT~l~ 70 (136)
+-|-|+|+.. |||.+.-. . .-.+.-.+|++++|--. . - .+-.-.-..|+-+.+.+|+|...-++
T Consensus 153 vailLsePg~DfTGGEF~lvEQRPR~QSr~~vvpLrqG~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiI 231 (236)
T COG3826 153 VAILLSEPGTDFTGGEFVLVEQRPRMQSRPTVVPLRQGDGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGII 231 (236)
T ss_pred EEEeccCCCCcccCceEEEEecccccccCCceeeccCCceEEEEeecCcccCccCccccchhcchhhhhcccceeeEEE
Confidence 5567888664 99886533 2 35566689999999521 1 1 11122223576666788998766555
No 49
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=29.26 E-value=1.5e+02 Score=23.44 Aligned_cols=69 Identities=26% Similarity=0.181 Sum_probs=43.2
Q ss_pred ccceEEeeeecC---CCCCCee-ecCCCC---------ceecccccceeEeeecccCccccccccCcCC-ccccCcccce
Q psy6258 2 NRAEMSSVELTD---VELGGAT-IFPSLN---------LTVFPEKGSAVFWHNAHANTLLDYWMYHSGC-PVALGNKWGK 67 (136)
Q Consensus 2 ~R~~T~~iyLnd---~~~GG~T-~Fp~l~---------l~v~p~kG~al~~~n~~~~~h~D~~s~H~~~-pv~~G~R~aT 67 (136)
-|.+|.+.|++. .+-||+- .|+.+. -++.|.-+..++|.... ..+.|+-. |-....|++.
T Consensus 161 ~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~~~~~~~~~ti~P~fn~lv~F~s~~------~Hs~h~V~~~~~~~~RlsV 234 (252)
T COG3751 161 IRLATYVYYLTREWKPEYGGELRLFHSLQKNNTAADSFKTIAPVFNSLVFFKSRP------SHSVHSVEEPYAAADRLSV 234 (252)
T ss_pred ceEEEEEeccCCCCCcCCCCceeecccccccccccccccccCCCCceEEEEEecC------CccceeccccccccceEEE
Confidence 388999999998 4458888 777763 45666666666664321 01344333 3356778766
Q ss_pred eeeecccccc
Q psy6258 68 LLLSGLTDVE 77 (136)
Q Consensus 68 ~l~~yLnd~~ 77 (136)
.=| |+++-.
T Consensus 235 ~GW-~r~~~~ 243 (252)
T COG3751 235 TGW-FRRPGP 243 (252)
T ss_pred eeE-EecCCC
Confidence 667 666544
No 50
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=29.24 E-value=89 Score=25.50 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=27.8
Q ss_pred CceEEecccCeEEEEEecCCCCCCCccceeccCccc--cCcEEEEE
Q psy6258 87 LNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVA--LGNKWGKL 130 (136)
Q Consensus 87 ~~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~--~G~K~~~~ 130 (136)
..++.+=++|+.++|.| .+++|+..+-. .|..|..-
T Consensus 312 ~~~~~~l~pGd~vi~DN--------~rvlH~R~af~~~~~~R~L~g 349 (366)
T TIGR02409 312 FKFTFKLEPGDLVLFDN--------TRLLHARDAFSNPEGKRHLQG 349 (366)
T ss_pred cEEEEEcCCCcEEEEec--------eEEeecCCCcCCCCCceEEEE
Confidence 35777888999999998 58999988765 46666543
No 51
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=28.86 E-value=34 Score=29.02 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=16.5
Q ss_pred cccCeEEEEEecCCCCCCCccceeccCccccCcEEEEEecc
Q psy6258 93 PEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLS 133 (136)
Q Consensus 93 p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~G~K~~~~~w~ 133 (136)
-++||.|+|+. ++.|+.-++..|..+-...-|
T Consensus 324 v~PGD~V~WHc---------D~iH~Vd~~h~g~~~ssV~Yi 355 (416)
T PF07350_consen 324 VEPGDYVFWHC---------DLIHAVDPEHNGKGDSSVMYI 355 (416)
T ss_dssp B-TT-EEEEET---------T--EEE--BSS-SS---EEE-
T ss_pred CCCCCeEEEeC---------CccccccccCCCCCCCCeeEe
Confidence 46899999985 799999998888776554433
No 52
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=26.92 E-value=53 Score=25.70 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=22.5
Q ss_pred CCCceEEecccCeEEEEEecCCCCCCCccceeccCcc
Q psy6258 85 PSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPV 121 (136)
Q Consensus 85 p~~~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv 121 (136)
|..-++.+=+.|+.++|.| .+++|.+.+-
T Consensus 230 p~~~~~~~w~~GD~viwDN--------r~~~H~a~~~ 258 (277)
T PRK09553 230 PEFQVRWRWQPNDVAIWDN--------RVTQHYANAD 258 (277)
T ss_pred cCeEEEEecCCCCEEEEcC--------cceeEecccC
Confidence 4446888899999999999 4788877543
No 53
>KOG3290|consensus
Probab=26.34 E-value=2e+02 Score=23.14 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=61.9
Q ss_pred eeeecCCCCCCeeecCCCCceecccccc-ee--EeeecccCccccccccCcCCc-cccCcccceeeeeccccccccCccc
Q psy6258 8 SVELTDVELGGATIFPSLNLTVFPEKGS-AV--FWHNAHANTLLDYWMYHSGCP-VALGNKWGKLLLSGLTDVELGGATI 83 (136)
Q Consensus 8 ~iyLnd~~~GG~T~Fp~l~l~v~p~kG~-al--~~~n~~~~~h~D~~s~H~~~p-v~~G~R~aT~l~~yLnd~~~GG~t~ 83 (136)
+|| ..+..||+|. |..++...|-+.. +. +|.-. +..+.-.||- +.-|....-++. +..-..+||.+.
T Consensus 136 yi~-K~P~iGg~vt-~HqD~~~~p~~P~d~~~~~W~Am------e~~t~~NGCL~~iPGshk~~l~~-~~yp~~sgg~~~ 206 (286)
T KOG3290|consen 136 YIF-KPPDIGGEVT-PHQDLTFFPWDPCDSCVGAWTAM------EDITLVNGCLQVIPGSHKGPLLF-HRYPDWSGGVNM 206 (286)
T ss_pred EEe-cCCCCCCccC-CcccceecccCchhhhhhhhhhh------hhhhhcCCceEeccccccCccee-eccCCccccccc
Confidence 344 6777888886 5577777766665 21 44322 3345555663 234444344444 444444666543
Q ss_pred C--------CCC-ceEEecccCeEEEEEecCCCC---CCCccceeccCcccc--C-cEEEEEe-cc
Q psy6258 84 F--------PSL-NLTVFPEKGSAVFWYNAHANT---LLDYRMYHSGCPVAL--G-NKWGKLL-LS 133 (136)
Q Consensus 84 F--------p~~-~~~v~p~~G~al~~~~~~~~~---~~d~~~~H~~~pv~~--G-~K~~~~~-w~ 133 (136)
= |+. ...|.=+||+.++|+.+.-.+ ..-..+.|+.-+=.. + .||+... |+
T Consensus 207 ~~~~~~~~~~q~~~~~v~mekg~tv~~h~~lvh~S~~NrSe~~R~a~s~h~~~~~~~ky~~~~g~~ 272 (286)
T KOG3290|consen 207 AYIGIQDYYPQSPRGHVEMEKGDTVFFHPLLVHGSGANRSEGFRKAISCHVAETDNTKYSEVNGTL 272 (286)
T ss_pred ceeecccCCccCCccceeecCCcEEEEeeeeeecCCCCcccccccccccceeecCCceeecCCccc
Confidence 1 211 344556899999998764332 112234454433222 3 5676655 53
No 54
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=23.06 E-value=50 Score=25.61 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=8.3
Q ss_pred ccCeEEEEEecCCC
Q psy6258 94 EKGSAVFWYNAHAN 107 (136)
Q Consensus 94 ~~G~al~~~~~~~~ 107 (136)
+.|++++|+|.++|
T Consensus 167 ~dgD~vif~NFR~D 180 (223)
T PF06415_consen 167 KDGDAVIFFNFRPD 180 (223)
T ss_dssp -TT-EEEE--S-ST
T ss_pred cCCCEEEEEecChh
Confidence 58999999999987
No 55
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.79 E-value=28 Score=23.89 Aligned_cols=13 Identities=54% Similarity=0.856 Sum_probs=11.4
Q ss_pred ccccccccCcccC
Q psy6258 72 GLTDVELGGATIF 84 (136)
Q Consensus 72 yLnd~~~GG~t~F 84 (136)
|+=|++.||+|+|
T Consensus 87 ypveV~vggatvf 99 (109)
T COG3870 87 YPVEVEVGGATVF 99 (109)
T ss_pred ccEEEecCceEEE
Confidence 7779999999998
No 56
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=21.15 E-value=97 Score=20.44 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=22.6
Q ss_pred ccccccccCcccCCC-CceEEecccCeEEEEEecCCCCCCCccceeccCcccc
Q psy6258 72 GLTDVELGGATIFPS-LNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVAL 123 (136)
Q Consensus 72 yLnd~~~GG~t~Fp~-~~~~v~p~~G~al~~~~~~~~~~~d~~~~H~~~pv~~ 123 (136)
.++|+.+|+...|.. ..+.|.-..|....+. ..--|.++|+..
T Consensus 8 ~~~~l~~g~~~~~~~~~~i~v~~~~g~~~A~~---------~~CpH~g~~L~~ 51 (106)
T PRK09965 8 PVADLPEGEALRVDTSPVIALFNVGGEFYAID---------DRCSHGNASLSE 51 (106)
T ss_pred eHHHcCCCCeEEEeCCCeEEEEEECCEEEEEe---------CcCCCCCCCCCc
Confidence 466777777655532 1233333344433333 356688888743
Done!