RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6258
(136 letters)
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded
beta helix, alpha-keto dependent non-heme iron
oxygenase; 1.40A {Bacillus anthracis str}
Length = 216
Score = 92.9 bits (231), Expect = 1e-24
Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 69 LLSGLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWG 128
L+ L DVE GG T FP LNL+V P KG AV++ + + L+ H G PV G KW
Sbjct: 146 LVMYLNDVEEGGETFFPKLNLSVHPRKGMAVYFEYFYQDQSLNELTLHGGAPVTKGEKWI 205
Score = 88.7 bits (220), Expect = 4e-23
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 9 VELTDVELGGATIFPSLNLTVFPEKGSAVFWHNAHANTLLDYWMYHSGCPVALGNKWG 66
+ L DVE GG T FP LNL+V P KG AV++ + + L+ H G PV G KW
Sbjct: 148 MYLNDVEEGGETFFPKLNLSVHPRKGMAVYFEYFYQDQSLNELTLHGGAPVTKGEKWI 205
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas
reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Length = 224
Score = 83.0 bits (205), Expect = 8e-21
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
Query: 48 LDYWMYHSGCPVALGNKWGKLLLSGLTDVELGGATIFPSLN---------------LTVF 92
DY+ G + +L LT VE GG T+ P+ L V
Sbjct: 115 YDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVK 174
Query: 93 PEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWG 128
P KG A+ +Y+ + D H CP G+KW
Sbjct: 175 PIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWS 210
Score = 78.4 bits (193), Expect = 4e-19
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 11 LTDVELGGATIFPSLN---------------LTVFPEKGSAVFWHNAHANTLLDYWMYHS 55
LT VE GG T+ P+ L V P KG A+ +++ + D H
Sbjct: 140 LTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHG 199
Query: 56 GCPVALGNKWG 66
CP G+KW
Sbjct: 200 SCPTLKGDKWS 210
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna
unguiculata}
Length = 225
Score = 30.0 bits (67), Expect = 0.20
Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 17/94 (18%)
Query: 19 ATIFPSLNLTVFPEKGSAVFWHNAHANTLL----DYWMYHSGCPVALGNKWGKLLLSGLT 74
A +FP LN TVF + + F L Y K L+ +
Sbjct: 103 AEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGNKYVRI---------AYDSKQLVGNIR 153
Query: 75 DVELGGATIFPSLNLTVFPEKGSAVFWYNAHANT 108
++ FP LN T F A F +
Sbjct: 154 NI----GDGFPVLNGTEFESGIDACFASHKEPEA 183
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.22
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 29/88 (32%)
Query: 39 WHNAHANTLLDYW----MYHSGCPVALGNKWGKLLLSGLTDVELGG-ATIFPS--LNLTV 91
+ L Y+ +H L ++E T+F L+
Sbjct: 461 SDDLIPPYLDQYFYSHIGHH------------------LKNIEHPERMTLFRMVFLDFRF 502
Query: 92 FPEK----GSAVFWYNAHANTLLDYRMY 115
+K +A + NTL + Y
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFY 530
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural
genomics, PSI-2, shewanella one MR-1, protein structure
initiative; 2.30A {Shewanella oneidensis}
Length = 370
Score = 28.7 bits (65), Expect = 0.57
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 8/38 (21%)
Query: 26 NLTVFPEKGSAVFWHNAH----ANTLLDYWM-YHSGCP 58
N+T P V NTL+D W+
Sbjct: 174 NITYLPGNSEEVL---GFDTGPGNTLIDAWVQQVKNES 208
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus
sativus} PDB: 3s0l_A 3v6n_A 3s18_A
Length = 227
Score = 25.8 bits (56), Expect = 4.7
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 16/94 (17%)
Query: 19 ATIFPSLNLTVFPEKGSAVFWHNAHANTLL----DYWMYHSGCPVALGNKWGKLLLSGLT 74
A +FP TVF A + L Y G + + +
Sbjct: 105 ADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKGDQYARIDYGSNSMVNKEIKSI------ 158
Query: 75 DVELGGATIFPSLNLTVFPEKGSAVFWYNAHANT 108
++ +P T+F A F +
Sbjct: 159 ------SSGYPCFRNTIFESGADAAFASHKTNEV 186
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME
TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H*
1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H*
2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H*
3ag1_H* 3ag2_H* ...
Length = 85
Score = 24.9 bits (54), Expect = 5.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 112 YRMYHSGCPVALGNKWGKLLLSGVF 136
R+Y S CP++ + W G F
Sbjct: 57 RRVYKSLCPISWVSTWDDRRAEGTF 81
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 25.6 bits (57), Expect = 6.6
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 12/36 (33%)
Query: 73 LTDVELGGATIFPSLNLTVFPEKGSAVF-WYNAHAN 107
V+LG TI E+G V W + AN
Sbjct: 262 KERVKLGDQTI----------EEGEYVRVWIAS-AN 286
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 25.2 bits (56), Expect = 7.3
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 12/36 (33%)
Query: 73 LTDVELGGATIFPSLNLTVFPEKGSAVF-WYNAHAN 107
V++ I ++G V W + AN
Sbjct: 262 KEKVKIRDQVI----------DEGELVRVWIAS-AN 286
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 25.0 bits (55), Expect = 9.9
Identities = 11/36 (30%), Positives = 12/36 (33%), Gaps = 12/36 (33%)
Query: 73 LTDVELGGATIFPSLNLTVFPEKGSAVF-WYNAHAN 107
TD EL G I G + Y A AN
Sbjct: 344 ATDTELCGQKI----------AAGDWLMLNYVA-AN 368
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.445
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,072,583
Number of extensions: 108966
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 19
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.7 bits)