RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6258
         (136 letters)



>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 79

 Score = 25.1 bits (55), Expect = 1.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 112 YRMYHSGCPVALGNKWGKLLLSGVF 136
            R+Y S CP++  + W      G F
Sbjct: 51  RRVYKSLCPISWVSTWDDRRAEGTF 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.445 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 512,576
Number of extensions: 20431
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)