Query psy6259
Match_columns 227
No_of_seqs 121 out of 1174
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 21:47:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 2E-53 4.4E-58 368.4 19.5 186 34-226 41-250 (310)
2 KOG1591|consensus 100.0 1E-52 2.2E-57 359.9 15.8 216 2-226 53-282 (289)
3 smart00702 P4Hc Prolyl 4-hydro 100.0 1.2E-37 2.5E-42 251.8 17.3 167 47-226 1-177 (178)
4 PRK05467 Fe(II)-dependent oxyg 100.0 1.3E-29 2.8E-34 210.7 13.8 162 48-226 1-176 (226)
5 PHA02813 hypothetical protein; 99.8 3.7E-18 8E-23 147.8 13.3 146 60-224 24-178 (354)
6 PHA02869 C4L/C10L-like gene fa 99.8 2.7E-18 5.8E-23 150.5 11.7 137 71-224 44-187 (418)
7 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.7 2.2E-17 4.7E-22 120.9 7.0 84 132-226 1-99 (100)
8 COG3128 PiuC Uncharacterized i 99.7 4.8E-16 1E-20 123.3 10.5 160 47-226 2-179 (229)
9 KOG3710|consensus 99.2 5.8E-10 1.3E-14 91.5 11.8 160 48-227 54-238 (280)
10 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.8 7.1E-09 1.5E-13 71.1 5.8 51 129-179 10-64 (70)
11 PF03336 Pox_C4_C10: Poxvirus 98.8 6.1E-08 1.3E-12 84.3 11.6 120 87-223 39-164 (339)
12 COG3751 EGL-9 Predicted prolin 98.7 2E-07 4.3E-12 78.6 11.2 91 128-226 134-238 (252)
13 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.6 9E-08 2E-12 69.4 5.3 87 130-226 2-96 (98)
14 PHA02866 Hypothetical protein; 98.4 1.7E-06 3.8E-11 73.8 8.8 130 70-223 30-164 (333)
15 TIGR02408 ectoine_ThpD ectoine 98.4 5.7E-06 1.2E-10 71.4 11.9 161 42-222 24-243 (277)
16 PF09859 Oxygenase-NA: Oxygena 98.1 1.7E-05 3.7E-10 62.4 7.8 90 132-224 64-168 (173)
17 KOG3844|consensus 98.1 1.4E-05 3.1E-10 70.8 8.2 163 37-226 25-215 (476)
18 PF13759 2OG-FeII_Oxy_5: Putat 98.0 2E-05 4.3E-10 57.7 6.8 74 134-223 4-99 (101)
19 TIGR02466 conserved hypothetic 97.7 0.00037 8E-09 57.4 10.5 78 130-223 96-195 (201)
20 PF05721 PhyH: Phytanoyl-CoA d 97.7 2.8E-05 6E-10 62.7 2.6 155 49-217 6-206 (211)
21 TIGR01762 chlorin-enz chlorina 97.5 0.001 2.3E-08 57.8 10.7 158 43-222 11-242 (288)
22 PF13532 2OG-FeII_Oxy_2: 2OG-F 97.3 0.0032 7E-08 50.9 10.8 149 49-217 2-177 (194)
23 PF12851 Tet_JBP: Oxygenase do 97.1 0.0023 5E-08 51.4 7.1 72 141-224 85-167 (171)
24 PHA02923 hypothetical protein; 96.5 0.0087 1.9E-07 51.6 6.9 98 104-224 43-142 (315)
25 COG3826 Uncharacterized protei 95.9 0.065 1.4E-06 43.2 8.6 92 130-224 124-230 (236)
26 PRK15401 alpha-ketoglutarate-d 94.9 0.25 5.4E-06 41.1 9.1 100 106-223 96-209 (213)
27 KOG3200|consensus 94.3 0.11 2.3E-06 41.7 5.3 97 42-152 7-110 (224)
28 COG3145 AlkB Alkylated DNA rep 94.2 0.79 1.7E-05 37.5 10.4 95 105-213 85-182 (194)
29 TIGR00568 alkb DNA alkylation 91.4 1.1 2.3E-05 35.9 7.3 86 105-196 74-160 (169)
30 PF06822 DUF1235: Protein of u 91.3 1.7 3.7E-05 37.2 8.7 98 104-224 32-133 (266)
31 PF14033 DUF4246: Protein of u 85.5 2.4 5.2E-05 39.8 6.4 35 183-226 436-476 (501)
32 KOG3959|consensus 84.8 0.78 1.7E-05 38.6 2.5 95 46-151 71-175 (306)
33 PLN03001 oxidoreductase, 2OG-F 81.8 13 0.00028 31.8 9.0 80 131-224 117-209 (262)
34 PLN00417 oxidoreductase, 2OG-F 80.4 13 0.00029 33.1 9.0 81 131-224 204-297 (348)
35 PLN02984 oxidoreductase, 2OG-F 79.9 16 0.00035 32.5 9.3 83 130-224 200-294 (341)
36 PHA02985 hypothetical protein; 79.4 19 0.00041 30.9 8.9 96 103-223 38-137 (271)
37 PF02668 TauD: Taurine catabol 79.1 2 4.4E-05 35.6 3.2 37 181-225 220-258 (258)
38 PLN02365 2-oxoglutarate-depend 78.9 14 0.00031 32.1 8.5 82 130-224 149-245 (300)
39 KOG4176|consensus 76.4 41 0.0009 29.8 10.6 170 32-223 112-300 (323)
40 COG5285 Protein involved in bi 76.2 6.6 0.00014 34.2 5.4 70 142-220 132-222 (299)
41 PLN02639 oxidoreductase, 2OG-F 75.4 25 0.00053 31.2 9.1 82 130-224 190-284 (337)
42 PLN02904 oxidoreductase 75.1 24 0.00052 31.6 9.0 80 130-224 208-301 (357)
43 PLN02485 oxidoreductase 74.5 15 0.00034 32.3 7.6 83 131-224 185-283 (329)
44 PRK09965 3-phenylpropionate di 74.3 6.1 0.00013 28.7 4.2 49 160-217 3-52 (106)
45 KOG0143|consensus 74.2 27 0.00058 30.9 9.0 80 131-223 177-270 (322)
46 cd00250 CAS_like Clavaminic ac 73.1 4.7 0.0001 34.1 3.8 38 181-226 219-259 (262)
47 PLN02216 protein SRG1 72.5 29 0.00062 31.1 8.9 82 130-224 210-304 (357)
48 PLN02299 1-aminocyclopropane-1 71.9 29 0.00063 30.6 8.6 83 131-224 159-252 (321)
49 PLN02947 oxidoreductase 71.1 37 0.00081 30.6 9.3 81 130-224 225-318 (374)
50 PLN02276 gibberellin 20-oxidas 67.2 51 0.0011 29.5 9.3 83 130-224 206-299 (361)
51 KOG4459|consensus 66.9 0.94 2E-05 41.5 -1.8 64 156-226 364-432 (471)
52 PLN02912 oxidoreductase, 2OG-F 66.8 30 0.00066 30.8 7.8 81 130-224 197-290 (348)
53 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 66.7 12 0.00026 30.5 4.8 95 103-216 69-179 (195)
54 PLN02997 flavonol synthase 66.2 34 0.00074 30.2 7.9 81 131-223 184-275 (325)
55 PLN02254 gibberellin 3-beta-di 65.9 59 0.0013 29.2 9.4 80 131-224 211-304 (358)
56 PLN02758 oxidoreductase, 2OG-F 65.7 60 0.0013 29.1 9.5 83 130-223 211-305 (361)
57 PLN02515 naringenin,2-oxogluta 64.1 33 0.00072 30.7 7.5 80 131-224 196-290 (358)
58 PLN02750 oxidoreductase, 2OG-F 63.2 52 0.0011 29.2 8.5 81 130-224 193-288 (345)
59 PTZ00273 oxidase reductase; Pr 58.5 65 0.0014 28.2 8.3 82 130-224 177-271 (320)
60 COG4340 Uncharacterized protei 54.4 14 0.0003 30.2 2.9 56 144-216 139-201 (226)
61 cd03528 Rieske_RO_ferredoxin R 54.0 22 0.00047 25.0 3.8 47 162-217 3-51 (98)
62 PLN02403 aminocyclopropanecarb 52.8 70 0.0015 27.9 7.4 81 131-224 154-248 (303)
63 PLN03178 leucoanthocyanidin di 52.6 64 0.0014 28.9 7.3 80 131-224 212-304 (360)
64 COG3491 PcbC Isopenicillin N s 52.4 76 0.0016 28.1 7.4 84 128-223 172-267 (322)
65 cd03530 Rieske_NirD_small_Baci 52.4 26 0.00055 24.7 3.9 47 163-218 4-53 (98)
66 PLN02393 leucoanthocyanidin di 51.8 89 0.0019 28.0 8.1 82 131-225 214-308 (362)
67 PLN02704 flavonol synthase 50.9 52 0.0011 29.1 6.4 80 131-224 200-292 (335)
68 PRK09553 tauD taurine dioxygen 50.6 11 0.00025 32.3 2.1 34 144-179 95-128 (277)
69 cd04338 Rieske_RO_Alpha_Tic55 49.8 27 0.00058 26.6 3.9 53 157-218 15-70 (134)
70 cd03474 Rieske_T4moC Toluene-4 49.1 28 0.00061 25.0 3.8 47 163-218 4-53 (108)
71 PLN02156 gibberellin 2-beta-di 48.2 2E+02 0.0043 25.5 10.1 81 130-224 178-274 (335)
72 cd04337 Rieske_RO_Alpha_Cao Ca 45.6 37 0.00079 25.6 4.0 52 157-217 15-69 (129)
73 PF00355 Rieske: Rieske [2Fe-2 45.5 34 0.00073 23.9 3.7 49 161-218 3-54 (97)
74 PF05118 Asp_Arg_Hydrox: Aspar 44.6 1E+02 0.0022 24.1 6.6 78 129-223 79-156 (163)
75 KOG1971|consensus 43.6 18 0.0004 32.9 2.4 62 156-226 280-354 (415)
76 TIGR02410 carnitine_TMLD trime 42.2 33 0.00072 30.7 3.9 36 181-225 312-347 (362)
77 cd03480 Rieske_RO_Alpha_PaO Ri 39.5 48 0.001 25.3 3.9 53 157-218 15-71 (138)
78 TIGR02409 carnitine_bodg gamma 38.2 42 0.00091 30.0 3.8 37 181-225 313-351 (366)
79 cd03535 Rieske_RO_Alpha_NDO Ri 37.6 37 0.00081 25.3 2.9 49 160-217 3-55 (123)
80 PRK09553 tauD taurine dioxygen 36.7 45 0.00097 28.6 3.7 29 181-217 233-261 (277)
81 cd03542 Rieske_RO_Alpha_HBDO R 36.0 49 0.0011 24.8 3.3 48 161-217 2-53 (123)
82 PHA02577 2 DNA end protector p 35.8 9.2 0.0002 30.5 -0.7 65 132-196 35-100 (181)
83 COG5448 Uncharacterized conser 35.8 1.3E+02 0.0028 23.9 5.6 37 128-171 81-119 (184)
84 COG2146 {NirD} Ferredoxin subu 34.0 76 0.0017 23.1 4.0 51 160-217 5-56 (106)
85 cd03478 Rieske_AIFL_N AIFL (ap 33.7 78 0.0017 22.0 4.0 43 166-217 6-50 (95)
86 cd03531 Rieske_RO_Alpha_KSH Th 33.0 80 0.0017 23.1 4.1 47 162-217 4-53 (115)
87 cd03472 Rieske_RO_Alpha_BPDO_l 32.6 44 0.00096 25.2 2.7 52 158-218 7-62 (128)
88 TIGR02377 MocE_fam_FeS Rieske 32.0 91 0.002 22.2 4.1 46 163-217 5-53 (101)
89 cd03548 Rieske_RO_Alpha_OMO_CA 31.2 90 0.002 23.6 4.2 54 156-218 11-66 (136)
90 PF07350 DUF1479: Protein of u 31.2 26 0.00056 32.2 1.3 35 182-225 319-354 (416)
91 PF02668 TauD: Taurine catabol 31.1 52 0.0011 27.1 3.1 36 142-179 96-131 (258)
92 cd00250 CAS_like Clavaminic ac 30.9 55 0.0012 27.5 3.3 37 141-179 94-130 (262)
93 TIGR02409 carnitine_bodg gamma 30.6 42 0.00092 30.0 2.6 36 142-179 186-221 (366)
94 cd03479 Rieske_RO_Alpha_PhDO_l 29.4 94 0.002 23.8 4.1 51 158-217 20-74 (144)
95 cd03477 Rieske_YhfW_C YhfW fam 28.0 91 0.002 21.9 3.5 43 166-217 5-50 (91)
96 cd03536 Rieske_RO_Alpha_DTDO T 27.2 99 0.0021 22.9 3.7 48 161-217 2-53 (123)
97 PF10637 Ofd1_CTDD: Oxoglutara 27.0 86 0.0019 27.0 3.7 59 111-178 123-187 (266)
98 cd03469 Rieske_RO_Alpha_N Ries 26.8 1E+02 0.0022 22.3 3.7 47 163-218 4-54 (118)
99 PRK02963 carbon starvation ind 26.5 87 0.0019 27.7 3.7 34 181-222 266-302 (316)
100 PLN00139 hypothetical protein; 26.0 70 0.0015 28.2 3.1 37 141-179 111-147 (320)
101 PLN03002 oxidoreductase, 2OG-F 24.3 2.8E+02 0.0061 24.4 6.7 81 130-223 182-279 (332)
102 PF11191 DUF2782: Protein of u 23.0 1.9E+02 0.0041 20.9 4.5 42 181-225 62-105 (105)
103 PLN00095 chlorophyllide a oxyg 22.4 1.7E+02 0.0038 26.7 4.9 65 145-218 58-126 (394)
104 cd03532 Rieske_RO_Alpha_VanA_D 21.5 1.5E+02 0.0033 21.6 3.8 49 159-217 5-56 (116)
105 cd03467 Rieske Rieske domain; 21.1 1.9E+02 0.0041 20.0 4.1 13 206-218 41-53 (98)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=2e-53 Score=368.44 Aligned_cols=186 Identities=29% Similarity=0.482 Sum_probs=173.5
Q ss_pred eeCceEEEEeccCCcEEEEccCCCHHHHHHHHHHccCCeeecEEeecCCc--eeeeeeeeEEEEeCCCCCCCcHHHHHHH
Q psy6259 34 KIGPLKVEELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGKVVNYGDT--IYVDTRLSKVYFLYPEIFGDHPFLYKIQ 111 (227)
Q Consensus 34 ~~~P~k~e~ls~~p~I~~~~~fls~~Ec~~li~~~~~~~~~s~~~~~~~~--~~~~~R~s~~~~l~~~~~~~~~~~~~i~ 111 (227)
...|.|+|+||++|+|++|+||||++||++||+++++.+++|++.+...+ ..++.|+|+.+|+.. ..++++++|+
T Consensus 41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~---~~dpvv~~I~ 117 (310)
T PLN00052 41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDK---RQDPVVSRIE 117 (310)
T ss_pred CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecC---CCCHHHHHHH
Confidence 35899999999999999999999999999999999999999998766544 567899999999987 5789999999
Q ss_pred HHHHhccCCCcccccccCCceEEEEeCCCCcceeeeeCCCCC----CCCceEEEEEEeecCCCCCceeeeCCC-------
Q psy6259 112 TRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRD----EGLWRLASFMFYLTDVELGGATIFPSL------- 180 (227)
Q Consensus 112 ~ri~~~~g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~----~~~~R~~T~liYLnd~~~GGeT~Fp~~------- 180 (227)
+||.++++++.. ..|.+||+||++||+|++|+|++... ..++|++|||+||||+++||||+||.+
T Consensus 118 ~Ria~~t~lp~~----~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~ 193 (310)
T PLN00052 118 ERIAAWTFLPEE----NAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQP 193 (310)
T ss_pred HHHHHHhCCCcc----cCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccc
Confidence 999999999988 99999999999999999999998643 258999999999999999999999987
Q ss_pred -----------ceEEecccccEEEEEecCCCCCCCCccccccCCCccCeEEEEEecC
Q psy6259 181 -----------NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLS 226 (227)
Q Consensus 181 -----------~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~~W~ 226 (227)
+++|+|++|+||+|+|+.+||..|++++|+||||++|+||++++|+
T Consensus 194 ~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi 250 (310)
T PLN00052 194 KDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWI 250 (310)
T ss_pred cccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEee
Confidence 6999999999999999999999999999999999999999999997
No 2
>KOG1591|consensus
Probab=100.00 E-value=1e-52 Score=359.91 Aligned_cols=216 Identities=41% Similarity=0.705 Sum_probs=194.7
Q ss_pred cchhccCCCCCCCCCC-CCceEEEEeecCccceeeCceEEEEeccCCcEEEEccCCCHHHHHHHHHHccCCeeecEEe-e
Q psy6259 2 IYPLACQGNLSVPEDI-KSNLKCFYESYNNTFLKIGPLKVEELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGKVV-N 79 (227)
Q Consensus 2 ~~~~~c~~~~~~~~~~-~~~l~c~~~~~~~~~l~~~P~k~e~ls~~p~I~~~~~fls~~Ec~~li~~~~~~~~~s~~~-~ 79 (227)
.++..|++...+.+.. ...+.|++-.+ ||+.++|+|+|++|++|+++++|||+|++||++|+.++++.++++++. +
T Consensus 53 ~~~~~c~g~~~~~~~~~~~~~~~~~~~~--~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~ 130 (289)
T KOG1591|consen 53 VYEQGCRGELPPLTKLTLRRLSCRNRAG--PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVAD 130 (289)
T ss_pred chhhhccCccCccchhHhhhhhcccccC--cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeecc
Confidence 4788999999875542 33356665443 999999999999999999999999999999999999999999999984 4
Q ss_pred cCCc--eeeeeeeeEEEEeCCCCCCCcHHHHHHHHHHHhccCCCcccccccCCceEEEEeCCCCcceeeeeCCCC---C-
Q psy6259 80 YGDT--IYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPR---D- 153 (227)
Q Consensus 80 ~~~~--~~~~~R~s~~~~l~~~~~~~~~~~~~i~~ri~~~~g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~---~- 153 (227)
..++ ..+.+|+|+.+|+.. ..++++++|++||+++++++++ ..|.+||++|+.||+|.+|+|.+.. .
T Consensus 131 ~~~~~~~~~~~R~S~~t~l~~---~~~~~~~~i~~ri~~~T~l~~e----~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~ 203 (289)
T KOG1591|consen 131 KGTGHSTTSAVRTSSGTFLPD---GASPVVSRIEQRIADLTGLPVE----NGESLQVLNYGLGGHYEPHYDYFLPEEDET 203 (289)
T ss_pred CCcccccceeeEecceeEecC---CCCHHHHHHHHHHHhccCCCcc----cCccceEEEecCCccccccccccccccchh
Confidence 4444 445679999999998 6899999999999999999999 9999999999999999999999952 1
Q ss_pred ----CCCceEEEEEEeecCCCCCceeeeCCCce--EEecccccEEEEEecCCCCCCCCccccccCCCccCeEEEEEecC
Q psy6259 154 ----EGLWRLASFMFYLTDVELGGATIFPSLNL--TVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLS 226 (227)
Q Consensus 154 ----~~~~R~~T~liYLnd~~~GGeT~Fp~~~~--~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~~W~ 226 (227)
..++|++|+++||+|+++||+|+||.++. +|+|++|+|++|+|...|+..|+++.|++|||+.|.||+.+.|+
T Consensus 204 ~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~~~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi 282 (289)
T KOG1591|consen 204 FNGLNGGNRIATVLMYLSDVEQGGETVFPNLGMKPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWI 282 (289)
T ss_pred hhhcccCCcceeEEEEecccCCCCcccCCCCCCcccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeee
Confidence 15899999999999999999999999999 99999999999999999999999999999999999999999997
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=100.00 E-value=1.2e-37 Score=251.77 Aligned_cols=167 Identities=33% Similarity=0.491 Sum_probs=148.4
Q ss_pred CcEEEEccCCCHHHHHHHHHHccCCeeecEEeecCCc--eeeeeeeeEEEEeCCCCCCC-cHHHHHHHHHHHhccCCC--
Q psy6259 47 PRVVKIHDAIYDSEINRIIELSKGKVERGKVVNYGDT--IYVDTRLSKVYFLYPEIFGD-HPFLYKIQTRIQDMTNLV-- 121 (227)
Q Consensus 47 p~I~~~~~fls~~Ec~~li~~~~~~~~~s~~~~~~~~--~~~~~R~s~~~~l~~~~~~~-~~~~~~i~~ri~~~~g~~-- 121 (227)
|.|++++||||++||++|++.+++...++.+..+.++ ..+++|+|...|+.. .. +++++.|.+||.++++++
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~---~~~~~~~~~l~~~i~~~~~~~~~ 77 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLEL---LKGDLVIERIRQRLADFLGLLRG 77 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCC---CCCCHHHHHHHHHHHHHHCCCch
Confidence 7899999999999999999999887777877655433 457899999999987 33 789999999999999886
Q ss_pred -cccccccCCceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCCce----EEecccccEEEEEe
Q psy6259 122 -IGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLNL----TVFPEKGSAVFWYN 196 (227)
Q Consensus 122 -~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~----~v~P~~G~al~f~~ 196 (227)
.. ..+.+++++|++|++|.+|+|.......++|.+|+++||||+++||+|.|+..+. +|+|++|++|+|++
T Consensus 78 ~~~----~~~~~~~~~Y~~g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~~~~~~~v~P~~G~~v~f~~ 153 (178)
T smart00702 78 LPL----SAEDAQVARYGPGGHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLGLMVCATVKPKKGDLLFFPS 153 (178)
T ss_pred hhc----cCcceEEEEECCCCcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCCCccceEEeCCCCcEEEEeC
Confidence 45 8999999999999999999999876544689999999999999999999999877 99999999999998
Q ss_pred cCCCCCCCCccccccCCCccCeEEEEEecC
Q psy6259 197 AHANTLLDYRMYHSGCPVALGNKWGKLLLS 226 (227)
Q Consensus 197 ~~~~g~~d~~~~H~g~pV~~G~K~i~~~W~ 226 (227)
.. ++++|++|||++|+||+++.|+
T Consensus 154 ~~------~~~~H~v~pv~~G~r~~~~~W~ 177 (178)
T smart00702 154 GR------GRSLHGVCPVTRGSRWAITGWI 177 (178)
T ss_pred CC------CCccccCCcceeCCEEEEEEEE
Confidence 52 2699999999999999999997
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.96 E-value=1.3e-29 Score=210.74 Aligned_cols=162 Identities=20% Similarity=0.224 Sum_probs=125.4
Q ss_pred cEEEEccCCCHHHHHHHHHHcc-CCeeecEEeecCCceeeeeeeeEEEEeCCCCCCCcHHHHHHHHHHHhccCCCccc--
Q psy6259 48 RVVKIHDAIYDSEINRIIELSK-GKVERGKVVNYGDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVIGR-- 124 (227)
Q Consensus 48 ~I~~~~~fls~~Ec~~li~~~~-~~~~~s~~~~~~~~~~~~~R~s~~~~l~~~~~~~~~~~~~i~~ri~~~~g~~~~~-- 124 (227)
+|++++|+||++||+++++..+ ..+.++.+..+. ..+.+|++... .. +++..+.|.++|.+.+.-++..
T Consensus 1 Mi~~I~~vLs~eec~~~~~~le~~~~~dg~~taG~--~~~~vKnN~ql--~~----d~~~a~~l~~~i~~~L~~~~l~~s 72 (226)
T PRK05467 1 MLLHIPDVLSPEEVAQIRELLDAAEWVDGRVTAGA--QAAQVKNNQQL--PE----DSPLARELGNLILDALTRNPLFFS 72 (226)
T ss_pred CeeeecccCCHHHHHHHHHHHHhcCCccCCcCcCc--cchhccccccc--CC----CCHHHHHHHHHHHHHHhcCchhhh
Confidence 4789999999999999999986 466655543322 34577777664 33 4677788888887754321110
Q ss_pred --ccccCCceEEEEeCCCCcceeeeeCCCCCC--C---CceEEEEEEeecCCC--CCceeeeCCC--ceEEecccccEEE
Q psy6259 125 --EERYKGPLQINNYGLGGHYDLHCDATPRDE--G---LWRLASFMFYLTDVE--LGGATIFPSL--NLTVFPEKGSAVF 193 (227)
Q Consensus 125 --~~~~~e~~~v~rY~~G~~y~~H~D~~~~~~--~---~~R~~T~liYLnd~~--~GGeT~Fp~~--~~~v~P~~G~al~ 193 (227)
.+....++++.||.+|++|++|+|...... . .+|.+|+++||||++ +||||+|+.. ..+|+|++|++|+
T Consensus 73 a~lp~~i~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~g~~~Vkp~aG~~vl 152 (226)
T PRK05467 73 AALPRKIHPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTYGEHRVKLPAGDLVL 152 (226)
T ss_pred hccccccccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCCCcEEEecCCCeEEE
Confidence 111346789999999999999999986542 1 245899999999874 8999999853 5799999999999
Q ss_pred EEecCCCCCCCCccccccCCCccCeEEEEEecC
Q psy6259 194 WYNAHANTLLDYRMYHSGCPVALGNKWGKLLLS 226 (227)
Q Consensus 194 f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~~W~ 226 (227)
|++ .++|+|+||++|+||+++.|+
T Consensus 153 fps---------~~lH~v~pVt~G~R~~~~~Wi 176 (226)
T PRK05467 153 YPS---------TSLHRVTPVTRGVRVASFFWI 176 (226)
T ss_pred ECC---------CCceeeeeccCccEEEEEecH
Confidence 998 599999999999999999997
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.77 E-value=3.7e-18 Score=147.80 Aligned_cols=146 Identities=18% Similarity=0.152 Sum_probs=108.8
Q ss_pred HHHHHHHHccCCeeecEEeecCCc---eeeeeeeeEEEEeCCCCCCCcHHHHHHHHHHHhc-----cCCCcccccccCCc
Q psy6259 60 EINRIIELSKGKVERGKVVNYGDT---IYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDM-----TNLVIGREERYKGP 131 (227)
Q Consensus 60 Ec~~li~~~~~~~~~s~~~~~~~~---~~~~~R~s~~~~l~~~~~~~~~~~~~i~~ri~~~-----~g~~~~~~~~~~e~ 131 (227)
+.-..++...-.+..|.+.+...+ .....|+++++.++. + +.|.+||..+ .|..+-..-+.+|.
T Consensus 24 ~l~~~i~~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~------~--~~L~erIr~~Lp~~l~~~~lv~~V~vner 95 (354)
T PHA02813 24 IIMDMIKYKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRG------L--DDIFKVIRKKLLLSFEFPQKISDIILDNT 95 (354)
T ss_pred HHHHHHhccccCccccceeccccCceEEccccccceEEEEcC------H--HHHHHHHHHhhHHHhcCCccceeEEEcce
Confidence 333444433446778888775443 678899999998865 2 5566666553 23321001237899
Q ss_pred eEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC-ceEEecccccEEEEEecCCCCCCCCccccc
Q psy6259 132 LQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL-NLTVFPEKGSAVFWYNAHANTLLDYRMYHS 210 (227)
Q Consensus 132 ~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~-~~~v~P~~G~al~f~~~~~~g~~d~~~~H~ 210 (227)
++++||.+|++|++|.|+....+.....+|+++|||++++||||.|... .-+|. .|++|+|.. ...|+
T Consensus 96 irfyrY~kGq~F~~H~Dg~~~r~k~~s~~tLLLYLN~~~~GGeT~f~~~~~tsI~--~g~dlLFdh---------~l~He 164 (354)
T PHA02813 96 ITLIKYEKGDFFNNHRDFIHFKSKNCYCYHLVLYLNNTSKGGNTNIHIKDNTIFS--TKNDVLFDK---------TLNHS 164 (354)
T ss_pred EEEEEECCCcccCcccCCceeecCCceEEEEEEEEeccCCCCceEEEcCCCceEe--ecceEEEec---------ccccC
Confidence 9999999999999999987644324489999999999999999999864 22455 999999998 59999
Q ss_pred cCCCccCeEEEEEe
Q psy6259 211 GCPVALGNKWGKLL 224 (227)
Q Consensus 211 g~pV~~G~K~i~~~ 224 (227)
|++|.+|.|||+..
T Consensus 165 g~~V~sG~KyVa~~ 178 (354)
T PHA02813 165 SDIITDGEKNIALI 178 (354)
T ss_pred CcEeccCeEEEEEE
Confidence 99999999998853
No 6
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.77 E-value=2.7e-18 Score=150.54 Aligned_cols=137 Identities=16% Similarity=0.170 Sum_probs=107.7
Q ss_pred CeeecEEeecCCc---eeeeeeeeEEEEeCCCCCCCcHHHHHHHHHHHhccCCCccc---ccccCCceEEEEeCCCCcce
Q psy6259 71 KVERGKVVNYGDT---IYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVIGR---EERYKGPLQINNYGLGGHYD 144 (227)
Q Consensus 71 ~~~~s~~~~~~~~---~~~~~R~s~~~~l~~~~~~~~~~~~~i~~ri~~~~g~~~~~---~~~~~e~~~v~rY~~G~~y~ 144 (227)
-+.+|.+.+...| .....|+|++.-+.. ...+.|.+||..+.-..... .-+.++.++++||.+|++|+
T Consensus 44 ~~~~s~i~~~~~g~e~~~~~~~ksKqii~e~------~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~ 117 (418)
T PHA02869 44 ICEDSKIFFPEKRTELLSIKDRKSKQIVFEN------SLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFA 117 (418)
T ss_pred ccccceeeccccCceeEeeccccceeEEech------HHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCccc
Confidence 3567888776655 556679999987653 56677777777643211110 12388999999999999999
Q ss_pred eeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCC-CceEEecccccEEEEEecCCCCCCCCccccccCCCccCeEEEEE
Q psy6259 145 LHCDATPRDEGLWRLASFMFYLTDVELGGATIFPS-LNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKL 223 (227)
Q Consensus 145 ~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~-~~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~ 223 (227)
+|.|+....+.....+|+++|||++++||||.|.. ....|.|++| |+|.. ...|+|++|.+|.||||.
T Consensus 118 ~H~Dg~~~rs~e~s~~tLLLYLNd~~~GGET~f~~~~~~sI~pksg--LLFdh---------~l~Heg~~V~sG~KyVar 186 (418)
T PHA02869 118 RHRDFSTVFSKNIICVHLLLYLEQPETGGETVIYIDNNTSVKLKTD--HLFDK---------TIEHESITVESGRKCVAL 186 (418)
T ss_pred ccccCceecCCCEEEEEEEEEEeccCCCCceEEEeCCCceEecCCC--eEecc---------ccccCCcEeecCeEEEEE
Confidence 99998765545667899999999999999999986 4578999999 88887 589999999999999986
Q ss_pred e
Q psy6259 224 L 224 (227)
Q Consensus 224 ~ 224 (227)
.
T Consensus 187 t 187 (418)
T PHA02869 187 F 187 (418)
T ss_pred E
Confidence 4
No 7
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.71 E-value=2.2e-17 Score=120.92 Aligned_cols=84 Identities=27% Similarity=0.455 Sum_probs=69.3
Q ss_pred eEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCC---CCceeeeCC------CceEEe-----cccccEEEEEec
Q psy6259 132 LQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVE---LGGATIFPS------LNLTVF-----PEKGSAVFWYNA 197 (227)
Q Consensus 132 ~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~---~GGeT~Fp~------~~~~v~-----P~~G~al~f~~~ 197 (227)
+++.+|.+|++|+||+|.... ..+.+|+++|||+++ +||+|+|.. ....+. |+.|++|+|++
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~~---~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~- 76 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSYD---PHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPS- 76 (100)
T ss_dssp -EEEEEETTEEEEEEESSSCC---CSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEES-
T ss_pred CEEEEECcCCEEeeeECCCCC---CcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeC-
Confidence 589999999999999998652 679999999999876 899999874 234555 99999999998
Q ss_pred CCCCCCCCccccccCCC-ccCeEEEEEecC
Q psy6259 198 HANTLLDYRMYHSGCPV-ALGNKWGKLLLS 226 (227)
Q Consensus 198 ~~~g~~d~~~~H~g~pV-~~G~K~i~~~W~ 226 (227)
. .++|++.|| ..|.|++++.|+
T Consensus 77 ~-------~~~H~v~~v~~~~~R~~l~~~~ 99 (100)
T PF13640_consen 77 D-------NSLHGVTPVGEGGRRYSLTFWF 99 (100)
T ss_dssp C-------TCEEEEEEE-EESEEEEEEEEE
T ss_pred C-------CCeecCcccCCCCCEEEEEEEE
Confidence 2 599999999 999999999997
No 8
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.67 E-value=4.8e-16 Score=123.34 Aligned_cols=160 Identities=19% Similarity=0.255 Sum_probs=114.8
Q ss_pred CcEEEEccCCCHHHHHHHHHHccC-CeeecEEeecCCceeeeeeeeEEEEeCCCCCCCcHHHHHHHHHHHhc-------c
Q psy6259 47 PRVVKIHDAIYDSEINRIIELSKG-KVERGKVVNYGDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDM-------T 118 (227)
Q Consensus 47 p~I~~~~~fls~~Ec~~li~~~~~-~~~~s~~~~~~~~~~~~~R~s~~~~l~~~~~~~~~~~~~i~~ri~~~-------~ 118 (227)
+..+.|+.+||+++|.++.+..+. .+.++....+- .-...|.+.. ++. +++..+.+.+-|.+. +
T Consensus 2 ~m~lhIp~VLs~a~va~iRa~l~~A~w~dGrat~g~--q~a~vk~n~q--lp~----~s~l~~~vg~~il~al~~~plff 73 (229)
T COG3128 2 IMMLHIPEVLSEAQVARIRAALEQAEWVDGRATQGP--QGAQVKNNLQ--LPQ----DSALARELGNEILQALTAHPLFF 73 (229)
T ss_pred ceEEechhhCCHHHHHHHHHHHhhccccccccccCc--chhhhhcccc--CCc----ccHHHHHHHHHHHHHHHhchhHH
Confidence 345689999999999999988753 44443332222 1123444443 232 455566666555432 2
Q ss_pred CCCcccccccCCceEEEEeCCCCcceeeeeCCCCC-C--CCce---EEEEEEeecCCC--CCceeeeCC--CceEEeccc
Q psy6259 119 NLVIGREERYKGPLQINNYGLGGHYDLHCDATPRD-E--GLWR---LASFMFYLTDVE--LGGATIFPS--LNLTVFPEK 188 (227)
Q Consensus 119 g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~-~--~~~R---~~T~liYLnd~~--~GGeT~Fp~--~~~~v~P~~ 188 (227)
+... +...+++++.+|..|++|..|.|+.... . .++| .++..+||+|++ +|||++.-+ .+..||-.+
T Consensus 74 ~aAL---p~t~~~P~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtYg~h~VklPA 150 (229)
T COG3128 74 AAAL---PRTCLPPLFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTYGNHRVKLPA 150 (229)
T ss_pred Hhhc---ccccCCchhhhccCCCcccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEeccccceEEeccC
Confidence 2111 1267889999999999999999998766 2 2334 455778999986 699999754 478899999
Q ss_pred ccEEEEEecCCCCCCCCccccccCCCccCeEEEEEecC
Q psy6259 189 GSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLS 226 (227)
Q Consensus 189 G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~~W~ 226 (227)
|++|+|++ .++|.+.||+.|.|+....|+
T Consensus 151 GdLVlypS---------tSlH~VtPVTRg~R~asffW~ 179 (229)
T COG3128 151 GDLVLYPS---------TSLHEVTPVTRGERFASFFWI 179 (229)
T ss_pred CCEEEccc---------ccceeccccccCceEEEeeeh
Confidence 99999999 599999999999999999997
No 9
>KOG3710|consensus
Probab=99.15 E-value=5.8e-10 Score=91.55 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=108.0
Q ss_pred cEEEEccCCCHHHHHHHHH----Hcc-CCeeecEEeecCCceeeeeeeeEEEEeCCCCCC----------CcHHHHHHHH
Q psy6259 48 RVVKIHDAIYDSEINRIIE----LSK-GKVERGKVVNYGDTIYVDTRLSKVYFLYPEIFG----------DHPFLYKIQT 112 (227)
Q Consensus 48 ~I~~~~~fls~~Ec~~li~----~~~-~~~~~s~~~~~~~~~~~~~R~s~~~~l~~~~~~----------~~~~~~~i~~ 112 (227)
.+.+++|||-.+-=..+.+ +.+ ..+.+..+........++.|.....|+..+... .++++...+.
T Consensus 54 g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~~~~~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h~~~ 133 (280)
T KOG3710|consen 54 GICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSPDAFHSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILHCNG 133 (280)
T ss_pred ceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccCcCCcchhhccCCceEecCCCCCccceeeecccchhhhhhhcc
Confidence 6788999998865544443 333 345555554433333458888899999763210 0111111111
Q ss_pred HHHh-ccCCCcccccccCCceEEEEeC-CCCcceeeeeCCCCCCCCceEEEEEEeec---CCC-CCceee-eCCC---ce
Q psy6259 113 RIQD-MTNLVIGREERYKGPLQINNYG-LGGHYDLHCDATPRDEGLWRLASFMFYLT---DVE-LGGATI-FPSL---NL 182 (227)
Q Consensus 113 ri~~-~~g~~~~~~~~~~e~~~v~rY~-~G~~y~~H~D~~~~~~~~~R~~T~liYLn---d~~-~GGeT~-Fp~~---~~ 182 (227)
|+-. +. .-..-.|+.|. .|-.|-.|+|+... ..|..|.|.||| |+. .||-+. ||.. -.
T Consensus 134 r~~~~~~---------gRtkAMVAcYPGNGtgYVrHVDNP~g---DGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~~~~a 201 (280)
T KOG3710|consen 134 RLGSYII---------GRTKAMVACYPGNGTGYVRHVDNPHG---DGRCITCIYYLNQNWDVKVHGGILRIFPEGSTTFA 201 (280)
T ss_pred ccccccc---------cceeEEEEEecCCCceeeEeccCCCC---CceEEEEEEEcccCcceeeccceeEeccCCCCccc
Confidence 1111 11 12345788895 57799999998775 689999999999 444 466664 8874 34
Q ss_pred EEecccccEEEEEecCCCCCCCCccccccCCCccCeEEEEEecCC
Q psy6259 183 TVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLSG 227 (227)
Q Consensus 183 ~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~~W~~ 227 (227)
.|.|+.+++|||++ |.+-.|++.|+.. +||.++.|++
T Consensus 202 dieP~fdrLlffwS-------drrnPhev~Pa~~-tryaitvwyf 238 (280)
T KOG3710|consen 202 DIEPKFDRLLFFWS-------DRRNPHEVQPAYA-TRYAITVWYF 238 (280)
T ss_pred ccCcCCCeEEEEEe-------cCCCccccccccc-cceEEEEEEe
Confidence 69999999999999 6688999999986 8999999974
No 10
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.84 E-value=7.1e-09 Score=71.12 Aligned_cols=51 Identities=25% Similarity=0.528 Sum_probs=43.7
Q ss_pred CCceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeec----CCCCCceeeeCC
Q psy6259 129 KGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLT----DVELGGATIFPS 179 (227)
Q Consensus 129 ~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLn----d~~~GGeT~Fp~ 179 (227)
.+.+++++|..|++|++|+|........+|.+|++|||| +..+||++.|..
T Consensus 10 ~~~~~~~~~~~g~~~~~H~D~~~~~~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~ 64 (70)
T PF13661_consen 10 RPNFRFYRYRRGDFFGWHVDADPSSSGKRRFLTLLLYLNEDWDEDFGGGELFFDD 64 (70)
T ss_pred CcceeEEEcCCCCEeeeeEcCCccccccceeEEEEEEecccccCccCCcEEEEeC
Confidence 567889999999999999999887645789999999999 455789888875
No 11
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=98.80 E-value=6.1e-08 Score=84.34 Aligned_cols=120 Identities=23% Similarity=0.233 Sum_probs=88.9
Q ss_pred eeeeeEEEEeCCCCCCCcHHHHHHHHHHHhcc-C--CCcccccccCCceEEEEeCCCCcceeeeeCCCCCCCCceEEEEE
Q psy6259 87 DTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMT-N--LVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFM 163 (227)
Q Consensus 87 ~~R~s~~~~l~~~~~~~~~~~~~i~~ri~~~~-g--~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~l 163 (227)
..|.|++.-+... ..+.+.++|.+.|..-+ . -.+. ..+.+.+++|++|++|+-|.|............+++
T Consensus 39 ~~r~sk~iv~~~~--~~~dI~~~ik~~l~~~lk~~v~~V~----V~n~iTfikY~kGd~f~~~~d~~~~~~~n~~~y~Lv 112 (339)
T PF03336_consen 39 EFRKSKQIVIEDS--LNDDIFSKIKNLLYDELKNVVEDVI----VDNTITFIKYEKGDFFDNHRDFIKRDSKNCLEYHLV 112 (339)
T ss_pred cccccceEEEecc--chHHHHHHHHHHHHHHhhcceeEEE----EcceEEEEEEccCcchhhhcccceeccCCceEEEEE
Confidence 4788888766631 24667777777765432 2 1222 667899999999999999999555444567899999
Q ss_pred EeecCCCCCceeeeC---CCceEEecccccEEEEEecCCCCCCCCccccccCCCccCeEEEEE
Q psy6259 164 FYLTDVELGGATIFP---SLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKL 223 (227)
Q Consensus 164 iYLnd~~~GGeT~Fp---~~~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~ 223 (227)
+||+.+.+||+|.+. ...-.|. .++-++|.- ...|...+|.+|.|+||.
T Consensus 113 LyL~~~~~GGktkiyi~~~~~tvI~--~~~DvLFdK---------sl~h~s~~V~~G~K~VAl 164 (339)
T PF03336_consen 113 LYLNNPENGGKTKIYIDPNDNTVIS--TSEDVLFDK---------SLNHESIIVEEGRKIVAL 164 (339)
T ss_pred EEEeccCCCceEEEEECCCCceeee--ccccEEEec---------cccccceEeccCeEEEEE
Confidence 999999999999954 2221243 366777765 589999999999999965
No 12
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2e-07 Score=78.65 Aligned_cols=91 Identities=27% Similarity=0.265 Sum_probs=73.6
Q ss_pred cCCceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecC---CCCCcee-eeCCCc---------eEEecccccEEEE
Q psy6259 128 YKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTD---VELGGAT-IFPSLN---------LTVFPEKGSAVFW 194 (227)
Q Consensus 128 ~~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd---~~~GGeT-~Fp~~~---------~~v~P~~G~al~f 194 (227)
..-+.|+.-|.+|.||..|-|.... ...|.+|.++|+|. ++-|||+ .|+.+. .+|.|.-+++++|
T Consensus 134 ~~ve~~~~~y~~G~~l~~H~D~~~~--~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~~~~~~~~~ti~P~fn~lv~F 211 (252)
T COG3751 134 SEVEGQITVYNPGCFLLKHDDNGRD--KDIRLATYVYYLTREWKPEYGGELRLFHSLQKNNTAADSFKTIAPVFNSLVFF 211 (252)
T ss_pred eeeeeeeeEecCCceeEeecccCCC--ccceEEEEEeccCCCCCcCCCCceeecccccccccccccccccCCCCceEEEE
Confidence 3445899999999999999999876 48899999999997 5679999 687652 5799999999999
Q ss_pred EecCCCCCCCCccccccCCCc-cCeEEEEEecC
Q psy6259 195 YNAHANTLLDYRMYHSGCPVA-LGNKWGKLLLS 226 (227)
Q Consensus 195 ~~~~~~g~~d~~~~H~g~pV~-~G~K~i~~~W~ 226 (227)
.+... .+.|.+.+|. .+.|..+++|+
T Consensus 212 ~s~~~------Hs~h~V~~~~~~~~RlsV~GW~ 238 (252)
T COG3751 212 KSRPS------HSVHSVEEPYAAADRLSVTGWF 238 (252)
T ss_pred EecCC------ccceeccccccccceEEEeeEE
Confidence 98421 2667776643 36899999997
No 13
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.59 E-value=9e-08 Score=69.43 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=55.2
Q ss_pred CceEEEEeC---CCCcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC--ceEEecccccEEEEEec-C--CCC
Q psy6259 130 GPLQINNYG---LGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL--NLTVFPEKGSAVFWYNA-H--ANT 201 (227)
Q Consensus 130 e~~~v~rY~---~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~--~~~v~P~~G~al~f~~~-~--~~g 201 (227)
+.+++.+|. .+..+.+|.|.. .+++|++++ +++|++.|... .+.|.|..+.+++..-. . -.+
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~------~~~~Til~~----~~~~gL~~~~~~~~~~v~~~~~~~~v~~G~~l~~~t~ 71 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE------DGLLTILFQ----DEVGGLQVRDDGEWVDVPPPPGGFIVNFGDALEILTN 71 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES--------SSEEEEEE----TSTS-EEEEETTEEEE----TTCEEEEEBHHHHHHTT
T ss_pred CEEEEEECCCcccCCceeCCCcCC------CCeEEEEec----ccchheeccccccccCccCccceeeeeceeeeecccC
Confidence 468999999 888999999985 467899998 67888888765 36677777666665443 1 134
Q ss_pred CCCCccccccCCCccCeEEEEEecC
Q psy6259 202 LLDYRMYHSGCPVALGNKWGKLLLS 226 (227)
Q Consensus 202 ~~d~~~~H~g~pV~~G~K~i~~~W~ 226 (227)
.......|+++++.+|.|++++.|+
T Consensus 72 g~~~~~~HrV~~~~~~~R~s~~~f~ 96 (98)
T PF03171_consen 72 GRYPATLHRVVPPTEGERYSLTFFL 96 (98)
T ss_dssp TSS----EEEE--STS-EEEEEEEE
T ss_pred CccCCceeeeEcCCCCCEEEEEEEE
Confidence 4556899999999999999999986
No 14
>PHA02866 Hypothetical protein; Provisional
Probab=98.39 E-value=1.7e-06 Score=73.81 Aligned_cols=130 Identities=15% Similarity=0.038 Sum_probs=88.6
Q ss_pred CCeeecEEeecCCc---eeeeeeeeEEEEeCCCCCCCcHHHHHHHHHHHhc--cCCCcccccccCCceEEEEeCCCCcce
Q psy6259 70 GKVERGKVVNYGDT---IYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDM--TNLVIGREERYKGPLQINNYGLGGHYD 144 (227)
Q Consensus 70 ~~~~~s~~~~~~~~---~~~~~R~s~~~~l~~~~~~~~~~~~~i~~ri~~~--~g~~~~~~~~~~e~~~v~rY~~G~~y~ 144 (227)
..+.+|.+.+...+ .+...|.|++. ++++.++. |+.++ ..-++- ..+-+.+.+|.+|.+|.
T Consensus 30 ~~w~~s~i~~~~~~i~~~~~~~~k~k~~---------~~v~~~v~-~~~~~~~~~~dv~----v~~~~t~vk~~kg~~fd 95 (333)
T PHA02866 30 NSWEDSDILRHRQFIPCEILVLEKSERT---------KQVFGAVK-RVLASSLTDYDVY----VCEHLTIVKCFKGVGFD 95 (333)
T ss_pred hccchhhhhhhccCCceeeeehhhhhhh---------HHHHHHHH-HHHhccCCCccEE----EeeeEEEEEEecccccc
Confidence 34888888766555 44455666543 45566555 33332 111222 55667899999999999
Q ss_pred eeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCCceEEecccccEEEEEecCCCCCCCCccccccCCCccCeEEEEE
Q psy6259 145 LHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKL 223 (227)
Q Consensus 145 ~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~ 223 (227)
-|.|.........+-..+++||+.+.+||+|.++--+-++--.+- -++|. -...|+..-|.+|+|.++.
T Consensus 96 n~~~~~~~~~~~~~~Y~LvLyL~~p~~GGkt~iyv~~~t~i~~~~-DvLFD---------Ksl~h~S~~V~~G~K~Val 164 (333)
T PHA02866 96 NRFSILTEDRHRGREYTLVLHLSSPKNGGKTDVCVGDKTVISTAD-DFLLE---------KRSEQLSNVVQEGEKIVVA 164 (333)
T ss_pred cceeEEEeccCCceEEEEEEEEeccccCCceEEEeCCCceEeecc-ceeee---------ccccccceeeecCcEEEEE
Confidence 999986644346678999999999999999998733333322233 34443 3689999999999998764
No 15
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=98.37 E-value=5.7e-06 Score=71.42 Aligned_cols=161 Identities=16% Similarity=0.100 Sum_probs=91.4
Q ss_pred EeccCCcEEEEccCCCHHHHHHHHHHccCCeeecEEeecCCc----eeeeeeeeEEEEeCCCCCCCcHHHHH------HH
Q psy6259 42 ELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGKVVNYGDT----IYVDTRLSKVYFLYPEIFGDHPFLYK------IQ 111 (227)
Q Consensus 42 ~ls~~p~I~~~~~fls~~Ec~~li~~~~~~~~~s~~~~~~~~----~~~~~R~s~~~~l~~~~~~~~~~~~~------i~ 111 (227)
....+.| ++++++||++||+.|.+.++..+........... .....|.....+ ..++.+.. |.
T Consensus 24 ~f~~dGy-vvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------~~~~~~~~l~~~p~l~ 96 (277)
T TIGR02408 24 SYERDGF-LLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAITEPGSNAVRSIFEVH------VLSPILARLVRDPRVA 96 (277)
T ss_pred HHHHCCE-EECcccCCHHHHHHHHHHHHHHHhcccccCCCcceecCCCCceEEEeccc------ccCHHHHHHHcChHHH
Confidence 3455777 5999999999999999877543321111000000 001122111111 12333333 44
Q ss_pred HHHHhccCCCcccccccCCceEEEEeC-CCCcceeeeeCCCCC-C---CCceEEEEEEeecCCCC-Cceeee-CCCc---
Q psy6259 112 TRIQDMTNLVIGREERYKGPLQINNYG-LGGHYDLHCDATPRD-E---GLWRLASFMFYLTDVEL-GGATIF-PSLN--- 181 (227)
Q Consensus 112 ~ri~~~~g~~~~~~~~~~e~~~v~rY~-~G~~y~~H~D~~~~~-~---~~~R~~T~liYLnd~~~-GGeT~F-p~~~--- 181 (227)
..+++++|-+.. .....-+.+.+ .|+.+.||.|...-. . ...+.+|+.|+|.|+.+ .|.+.| |...
T Consensus 97 ~~~~~LlG~~~~----l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~ 172 (277)
T TIGR02408 97 NAARQILGSDVY----VHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTF 172 (277)
T ss_pred HHHHHHcCCCeE----EEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCc
Confidence 555567775543 22211223343 245788999975311 1 12368999999999864 466665 4210
Q ss_pred --------------------------------------eEEecccccEEEEEecCCCCCCCCccccccCCCccC-eEEEE
Q psy6259 182 --------------------------------------LTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG-NKWGK 222 (227)
Q Consensus 182 --------------------------------------~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G-~K~i~ 222 (227)
+.+.-++|++|||.+ +++|++.+-.+. .|+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~~---------~~~H~S~~N~s~~~R~~l 243 (277)
T TIGR02408 173 ISCVGETPRDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFDC---------NTMHGSGSNITPWPRSNV 243 (277)
T ss_pred ccCCccccchhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEcc---------ccccCCCCCCCCCcceeE
Confidence 124558999999988 699999998886 44444
No 16
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=98.09 E-value=1.7e-05 Score=62.44 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=69.3
Q ss_pred eEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCC---CCCceeeeCCC-------ceEEecccccEEEEEecCCC-
Q psy6259 132 LQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDV---ELGGATIFPSL-------NLTVFPEKGSAVFWYNAHAN- 200 (227)
Q Consensus 132 ~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~---~~GGeT~Fp~~-------~~~v~P~~G~al~f~~~~~~- 200 (227)
..+++|++|++=..|.|..-.. -=-+.+++.||++ ++|||.++-.. ...+.++.|+++||.....-
T Consensus 64 plllrY~~gdyn~LHqdlyGe~---vFPlQvv~lLs~Pg~DftGGEFVltEQrPR~QSR~~V~~L~qGda~if~t~~RPv 140 (173)
T PF09859_consen 64 PLLLRYGPGDYNCLHQDLYGEH---VFPLQVVILLSEPGEDFTGGEFVLTEQRPRMQSRAMVLPLRQGDALIFATNHRPV 140 (173)
T ss_pred hhhheeCCCCccccccCCCCCc---ccCeEEEEEcCCCCCcccCceEEEEEecCCccCccccCCcCCCCEEEEecCCCCc
Confidence 6789999999999999976432 1125788999985 58999998543 46789999999999876431
Q ss_pred ----CCCCCccccccCCCccCeEEEEEe
Q psy6259 201 ----TLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 201 ----g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
|-.-..+-|++.+|.+|+++.+-.
T Consensus 141 ~G~rG~yRv~~RHgVS~vrsG~R~tLgl 168 (173)
T PF09859_consen 141 RGARGYYRVNMRHGVSRVRSGERHTLGL 168 (173)
T ss_pred CCCccceecccccccccccccceEEEEE
Confidence 222245889999999999998754
No 17
>KOG3844|consensus
Probab=98.09 E-value=1.4e-05 Score=70.79 Aligned_cols=163 Identities=22% Similarity=0.176 Sum_probs=108.4
Q ss_pred ceEEEEeccCCcE-EEEccCCCHHHHHHHHHHcc--CCeeecEEeecCCceeeeeee---eEEEEeCCCCCCCcH-----
Q psy6259 37 PLKVEELYLDPRV-VKIHDAIYDSEINRIIELSK--GKVERGKVVNYGDTIYVDTRL---SKVYFLYPEIFGDHP----- 105 (227)
Q Consensus 37 P~k~e~ls~~p~I-~~~~~fls~~Ec~~li~~~~--~~~~~s~~~~~~~~~~~~~R~---s~~~~l~~~~~~~~~----- 105 (227)
|+|.+.=...|+- +++++|+++...+.+.+-.. -.++.-.. .-+|. .+.+-++. -+.+
T Consensus 25 ~~kk~~ekngPf~h~~i~~~vnd~~l~~vrkei~~~~~f~~k~t--------Dlyr~~QtgdL~nl~~---le~p~lf~~ 93 (476)
T KOG3844|consen 25 PLKKEYEKNGPFNHFIIRDFVNDSLLRVVRKEIHGSIHFTEKET--------DLYRVLQTGDLANLEG---LEFPALFSF 93 (476)
T ss_pred hHhhhhhccCCCcceeeeccCCHHHHHHHHHHHhhccchhhhcc--------hhhheecccccccccc---ccchhHHHH
Confidence 4555444455644 57999999988888874443 23332111 01111 11222222 1222
Q ss_pred ---HHHHHHHHHHhccCCCcccccccCCceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCC----CCceee-e
Q psy6259 106 ---FLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVE----LGGATI-F 177 (227)
Q Consensus 106 ---~~~~i~~ri~~~~g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~----~GGeT~-F 177 (227)
+......-++.++|.-.. ..-++-+..|..|.+--.|-|.. +.|.++|++||-|.. -||++. |
T Consensus 94 r~~Lyke~r~~~q~vtg~~s~----sk~Dms~s~Y~kgd~LL~HDD~i-----etRriaFilYL~~~Dwds~~GG~L~Lf 164 (476)
T KOG3844|consen 94 RDSLYKEARGEIQDVTGGLST----SKIDMSGSYYRKGDHLLCHDDVI-----ETRRIAFILYLVDPDWDSEYGGELRLF 164 (476)
T ss_pred HHHHHHHHHHHHHhccCcccc----ceeeeceeeeeccceeccccccc-----cceEEEEEEEecCcccccccCceeEec
Confidence 222334445567754433 56678899999999999999875 568899999999866 388887 7
Q ss_pred CCC--------ceEEecccccEEEEEecCCCCCCCCccccccCCCccCeE-EEEEecC
Q psy6259 178 PSL--------NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNK-WGKLLLS 226 (227)
Q Consensus 178 p~~--------~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K-~i~~~W~ 226 (227)
|.. -.++.|+-.+.++|... |-+.|.+..|.+..+ ..+++||
T Consensus 165 ~~d~~~~P~s~~asl~P~~Nql~fFeVs-------p~SFH~V~Ev~sde~RlSIsGWf 215 (476)
T KOG3844|consen 165 PDDCPSQPKSVAASLEPQWNQLVFFEVS-------PISFHDVEEVLSDEPRLSISGWF 215 (476)
T ss_pred ccccccCccchhhccCcccceEEEEEec-------ccchhhHHHHhccCcceeEeeee
Confidence 653 23588999999999985 479999999998755 9999997
No 18
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=98.02 E-value=2e-05 Score=57.71 Aligned_cols=74 Identities=23% Similarity=0.254 Sum_probs=44.7
Q ss_pred EEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC---------------------ceEEecccccEE
Q psy6259 134 INNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL---------------------NLTVFPEKGSAV 192 (227)
Q Consensus 134 v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~---------------------~~~v~P~~G~al 192 (227)
+..+++|++-.+|.= ....+|.++||+-+++.|.+.|.+- ...++|+.|++|
T Consensus 4 ~ni~~~g~~~~~H~H-------~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lv 76 (101)
T PF13759_consen 4 ANIYRKGGYNEPHNH-------PNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLV 76 (101)
T ss_dssp EEEE-TT--EEEE---------TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEE
T ss_pred EEEeCCCCccCceEC-------CCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEE
Confidence 356889998888873 3457999999998887888887531 467999999999
Q ss_pred EEEecCCCCCCCCccccccCCCccC-eEEEEE
Q psy6259 193 FWYNAHANTLLDYRMYHSGCPVALG-NKWGKL 223 (227)
Q Consensus 193 ~f~~~~~~g~~d~~~~H~g~pV~~G-~K~i~~ 223 (227)
|||+ .+.|++.|-.+. .|+++.
T Consensus 77 lFPs---------~l~H~v~p~~~~~~Risis 99 (101)
T PF13759_consen 77 LFPS---------WLWHGVPPNNSDEERISIS 99 (101)
T ss_dssp EEET---------TSEEEE----SSS-EEEEE
T ss_pred EeCC---------CCEEeccCcCCCCCEEEEE
Confidence 9998 699999999886 666653
No 19
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=97.74 E-value=0.00037 Score=57.43 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=60.0
Q ss_pred CceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCC--C-------------------ceEEeccc
Q psy6259 130 GPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPS--L-------------------NLTVFPEK 188 (227)
Q Consensus 130 e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~--~-------------------~~~v~P~~ 188 (227)
...=++++.+|++-..|.= .+-.+|-+.||+.+..+|...|-. . .+.|+|+.
T Consensus 96 ~~~W~ni~~~Gg~h~~H~H-------p~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~ 168 (201)
T TIGR02466 96 QKAWVNILPQGGTHSPHLH-------PGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQE 168 (201)
T ss_pred eeEeEEEcCCCCccCceEC-------CCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCC
Confidence 3445567889998888772 345799999999888788887742 1 23589999
Q ss_pred ccEEEEEecCCCCCCCCccccccCCCcc-CeEEEEE
Q psy6259 189 GSAVFWYNAHANTLLDYRMYHSGCPVAL-GNKWGKL 223 (227)
Q Consensus 189 G~al~f~~~~~~g~~d~~~~H~g~pV~~-G~K~i~~ 223 (227)
|++|+||+ .+.|++.|-.+ ++|.++.
T Consensus 169 G~lvlFPS---------~L~H~v~p~~~~~~RISiS 195 (201)
T TIGR02466 169 GRVLLFES---------WLRHEVPPNESEEERISVS 195 (201)
T ss_pred CeEEEECC---------CCceecCCCCCCCCEEEEE
Confidence 99999999 69999999886 4776553
No 20
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.66 E-value=2.8e-05 Score=62.69 Aligned_cols=155 Identities=16% Similarity=0.069 Sum_probs=80.5
Q ss_pred EEEEccCCCHHHHHHHHHHccCC----e---eecEEeecCCceeeeeeeeEEEEeCCCCCCCcHHH-H-HHHHHHHhccC
Q psy6259 49 VVKIHDAIYDSEINRIIELSKGK----V---ERGKVVNYGDTIYVDTRLSKVYFLYPEIFGDHPFL-Y-KIQTRIQDMTN 119 (227)
Q Consensus 49 I~~~~~fls~~Ec~~li~~~~~~----~---~~s~~~~~~~~~~~~~R~s~~~~l~~~~~~~~~~~-~-~i~~ri~~~~g 119 (227)
.++++++|+++|++.|.+.+... . ........... ......++.........+. . .+...+.+++|
T Consensus 6 yvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (211)
T PF05721_consen 6 YVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFDESF-----FGDYTEQLAKSPNFYDLFLHPPRILDLVRALLG 80 (211)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEESTSC-----CCTCCCCGCCCHHHHHHHHTHHHHHHHHHHHHT
T ss_pred EEEECCcCCHHHHHHHHHHHHHHHhhhhcccccccccccccc-----ccccccccccchhhHHHHhhHHHHHHHHHHhhC
Confidence 36899999999999998877532 1 01111111100 0000011111000001111 2 45555666776
Q ss_pred CCcccccccCCceE-EEEeC-CCCcc-eeeeeCCCCCC-CCceEEEEEEeecCCC-CCceeee-CCC-------------
Q psy6259 120 LVIGREERYKGPLQ-INNYG-LGGHY-DLHCDATPRDE-GLWRLASFMFYLTDVE-LGGATIF-PSL------------- 180 (227)
Q Consensus 120 ~~~~~~~~~~e~~~-v~rY~-~G~~y-~~H~D~~~~~~-~~~R~~T~liYLnd~~-~GGeT~F-p~~------------- 180 (227)
-...........++ +.+-. +|... .||.|...... ...+.+|+.|+|.|+. +.|.+.+ |..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~~~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~~~~~~~ 160 (211)
T PF05721_consen 81 SDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHTDPPENQLTVWIALDDITPENGPLEVVPGSHKWGVEPHEERFP 160 (211)
T ss_dssp SSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTEESSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEEECCCCC
T ss_pred CcchhhhhhHHHHHhhhhccccCCCCCCCCCCCcccccCCccceEEEEEeeccCCcccCceEeecCCcCCCccccccccc
Confidence 65320000011111 22222 36665 99999876542 2678999999999984 4555654 431
Q ss_pred ------------------ceEEecccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 181 ------------------NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 181 ------------------~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
.+.+..++|++|||.. +++|++.|-.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~~---------~~~H~s~~N~s~ 206 (211)
T PF05721_consen 161 EEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFHS---------RLIHGSGPNTSD 206 (211)
T ss_dssp CCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEET---------TSEEEEE-B-SS
T ss_pred ccccccccccccccccCceEEeecCCCeEEEEcC---------CccccCCCCCCc
Confidence 1578889999999987 699999996654
No 21
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=97.53 E-value=0.001 Score=57.79 Aligned_cols=158 Identities=13% Similarity=0.079 Sum_probs=89.5
Q ss_pred eccCCcEEEEccCCCHHHHHHHHHHccCCee-ecEEeecCCceeeeeeeeEEEEeCCCCCCCcHHH------HHHHHHHH
Q psy6259 43 LYLDPRVVKIHDAIYDSEINRIIELSKGKVE-RGKVVNYGDTIYVDTRLSKVYFLYPEIFGDHPFL------YKIQTRIQ 115 (227)
Q Consensus 43 ls~~p~I~~~~~fls~~Ec~~li~~~~~~~~-~s~~~~~~~~~~~~~R~s~~~~l~~~~~~~~~~~------~~i~~ri~ 115 (227)
...+.+ ++++++||++|++.|.+.++..+. ++.......+ ...|.+ |... ..++.+ .+|...++
T Consensus 11 y~e~Gy-v~~~~~~s~eei~~L~~~~~~~l~~~~~~~~~~~~--~~~~~~---~~~~---~~~~~~~~l~~~~~l~~~~~ 81 (288)
T TIGR01762 11 FEKNGF-IGPFTLYSPEEMKETWKRIRLRLLDRSAAPYQDLG--GTNIAN---YDRH---LDDDFLASHICRPEICHRVE 81 (288)
T ss_pred HHhCCE-EeCcCCCCHHHHHHHHHHHHHHhhccccccccCCC--CceeEe---eeec---ccCHHHHHHhcCHHHHHHHH
Confidence 334666 589999999999999987753222 1111000000 011211 1111 112222 33555566
Q ss_pred hccCCCcccccccCCceEEEEeCCCCcceeeeeCCCCCC------------CCceEEEEEEeecCCC-CCceeee-CCC-
Q psy6259 116 DMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDE------------GLWRLASFMFYLTDVE-LGGATIF-PSL- 180 (227)
Q Consensus 116 ~~~g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~~------------~~~R~~T~liYLnd~~-~GGeT~F-p~~- 180 (227)
+++|-++. ..-..-+.+...++.+.||.|...-.. ...+.+|+.|.|.|+. +-|.+.| |..
T Consensus 82 ~llG~~v~----l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~viPGSH 157 (288)
T TIGR01762 82 SILGPNVL----CWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQFIPGTH 157 (288)
T ss_pred HHhCCcEE----eeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEEECCCC
Confidence 67776654 222233445444455899999653221 1247899999999975 3444443 110
Q ss_pred --------------------------------------------------ceEEecccccEEEEEecCCCCCCCCccccc
Q psy6259 181 --------------------------------------------------NLTVFPEKGSAVFWYNAHANTLLDYRMYHS 210 (227)
Q Consensus 181 --------------------------------------------------~~~v~P~~G~al~f~~~~~~g~~d~~~~H~ 210 (227)
.+.+.-++|++++|.. .++|+
T Consensus 158 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~l~~d~~~~~~~~~~v~~~lkaGd~~~f~~---------~t~Hg 228 (288)
T TIGR01762 158 NSMNYDETRRMTFEPDANNSVVKGGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFWS---------TLMHA 228 (288)
T ss_pred CCCCCCcccccccCccccccccccccccccccccchhhcccccCCccccceeeeeeCCceEEEECC---------Cceec
Confidence 1245558899999987 69999
Q ss_pred cCCCccC--eEEEE
Q psy6259 211 GCPVALG--NKWGK 222 (227)
Q Consensus 211 g~pV~~G--~K~i~ 222 (227)
+.|-++. .|+++
T Consensus 229 S~~N~S~~~~R~~~ 242 (288)
T TIGR01762 229 SYPNSGESQMRMGF 242 (288)
T ss_pred CCCCCCCCceEEEE
Confidence 9999885 35543
No 22
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=97.33 E-value=0.0032 Score=50.91 Aligned_cols=149 Identities=16% Similarity=0.135 Sum_probs=74.2
Q ss_pred EEEEccCCCHHHHHHHHHHccC--CeeecEEeecCCceeeeeee--eEEEEeC--------------CCCC-CCcHHHHH
Q psy6259 49 VVKIHDAIYDSEINRIIELSKG--KVERGKVVNYGDTIYVDTRL--SKVYFLY--------------PEIF-GDHPFLYK 109 (227)
Q Consensus 49 I~~~~~fls~~Ec~~li~~~~~--~~~~s~~~~~~~~~~~~~R~--s~~~~l~--------------~~~~-~~~~~~~~ 109 (227)
+++++||||++|.++|++.... .+...+... .......|. ....|.. ...+ -..+.+..
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~~ 79 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYPM--GKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLSR 79 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCC--CCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcC--CCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHHH
Confidence 5789999999999999988752 111111110 000000000 0011110 0000 01234566
Q ss_pred HHHHHHhccC-CCcccccccCCceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeC-------CCc
Q psy6259 110 IQTRIQDMTN-LVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFP-------SLN 181 (227)
Q Consensus 110 i~~ri~~~~g-~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp-------~~~ 181 (227)
+.+++.+..+ .... ......|..|..|+.-.+|.|.... ..+..++|+.+ |+..+|- ...
T Consensus 80 ~~~~~~~~~~~~~~~----~~n~~liN~Y~~g~~i~~H~D~~~~-~~~~~I~slSL-------G~~~~~~f~~~~~~~~~ 147 (194)
T PF13532_consen 80 LLERLVEATGIPPGW----RPNQCLINYYRDGSGIGPHSDDEEY-GFGPPIASLSL-------GSSRVFRFRNKSDDDEP 147 (194)
T ss_dssp HHHHHHHHHT-SHSS------SEEEEEEESSTT-EEEE---TTC--CCSEEEEEEE-------ES-EEEEEEECGGTS-E
T ss_pred HHHHHHHHhccccCC----CCCEEEEEecCCCCCcCCCCCcccc-cCCCcEEEEEE-------ccCceEEEeeccCCCcc
Confidence 6666655443 1111 3345677889999999999999843 23667777665 2222221 134
Q ss_pred eEEecccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 182 LTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 182 ~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
+.|....|+++++.... .... |++.++..+
T Consensus 148 ~~~~L~~gsl~vm~g~~-----r~~~-H~I~~~~~~ 177 (194)
T PF13532_consen 148 IEVPLPPGSLLVMSGEA-----RYDW-HGIPPVKKD 177 (194)
T ss_dssp EEEEE-TTEEEEEETTH-----HHHE-EEE-S-SCE
T ss_pred EEEEcCCCCEEEeChHH-----hhhe-eEcccccCC
Confidence 68899999999998532 2234 999998874
No 23
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=97.07 E-value=0.0023 Score=51.43 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=57.4
Q ss_pred CcceeeeeCCCCCCCCceEEEEEEeecC-CCCCceeeeCC-----CceEEecccccEEEEEecCCCCCCCCccccccCCC
Q psy6259 141 GHYDLHCDATPRDEGLWRLASFMFYLTD-VELGGATIFPS-----LNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPV 214 (227)
Q Consensus 141 ~~y~~H~D~~~~~~~~~R~~T~liYLnd-~~~GGeT~Fp~-----~~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV 214 (227)
--...|.|..... --+++++-|.- .++||..++|. .+++|.|..|++|+|-.. ...|+..||
T Consensus 85 r~t~~HrD~~~~~----~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~~--------~~~Hgvtpv 152 (171)
T PF12851_consen 85 RCTHSHRDTHNMP----NGYDVLCTLGRGDYDGGRLELPGLDPNILGVAFAYQPGTVLIFCAK--------RELHGVTPV 152 (171)
T ss_pred cCccceecCCCCC----CCeEEEEecCCccccCceEeccccccccCCEEEecCCCcEEEEccc--------ceeeecCcc
Confidence 3456788875432 23666666654 37899999999 999999999999999874 589999999
Q ss_pred cc-----CeEEEEEe
Q psy6259 215 AL-----GNKWGKLL 224 (227)
Q Consensus 215 ~~-----G~K~i~~~ 224 (227)
.. |+|+.++.
T Consensus 153 ~~~~~~~~~R~slvf 167 (171)
T PF12851_consen 153 ESPNRNHGTRISLVF 167 (171)
T ss_pred cCCCCCCCeEEEEEE
Confidence 98 99998875
No 24
>PHA02923 hypothetical protein; Provisional
Probab=96.53 E-value=0.0087 Score=51.57 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHhccCC--CcccccccCCceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCCc
Q psy6259 104 HPFLYKIQTRIQDMTNL--VIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLN 181 (227)
Q Consensus 104 ~~~~~~i~~ri~~~~g~--~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~ 181 (227)
+.+...|.+.|-+-+.. ++. ....+-+..|++|.+ .|. . ....-..+++||+.+++||++.|+..+
T Consensus 43 ~di~~~ir~liy~elk~v~~V~----V~n~iT~ikYekgd~--~~l--~----~~~~~y~LvLyL~~p~~GGt~i~~~~~ 110 (315)
T PHA02923 43 IDISECIREILYKQFKNVRNIE----VSSTISFIKYNPFND--TTL--T----DDNMGYYLVIYLNRPKSGKTLIYPTPE 110 (315)
T ss_pred hHHHHHHHHHHHHhccCcceEE----EeceEEEEEEcCCCc--cee--e----cCceEEEEEEEEeccCCCCeEEEecCC
Confidence 45677777766543221 222 455678999999996 222 1 133778899999999999999998765
Q ss_pred eEEecccccEEEEEecCCCCCCCCccccccCCCccCeEEEEEe
Q psy6259 182 LTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 182 ~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
++--.+- -++|. -...|+..-|.+|+|.||..
T Consensus 111 -t~i~~~~-DvLFd---------Ksl~h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 111 -TVITSSE-DIMFS---------KSLNFRFENVKRGYKLVMCS 142 (315)
T ss_pred -CeEeecc-ceeee---------cccccceeeeecCcEEEEEE
Confidence 3322233 34443 36899999999999998753
No 25
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=0.065 Score=43.25 Aligned_cols=92 Identities=15% Similarity=0.111 Sum_probs=67.6
Q ss_pred CceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCC---CCceeeeCCC-------ceEEecccccEEEEEecCC
Q psy6259 130 GPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVE---LGGATIFPSL-------NLTVFPEKGSAVFWYNAHA 199 (227)
Q Consensus 130 e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~---~GGeT~Fp~~-------~~~v~P~~G~al~f~~~~~ 199 (227)
....++.|++|++=-.|.|-.-.- -=-+.+.|-|+|+. .|||.+.-.. .-.|.-++|.+++|-....
T Consensus 124 pTpLlLqYgpgD~NcLHQDLYGel---vFPLQvailLsePg~DfTGGEF~lvEQRPR~QSr~~vvpLrqG~g~vFavr~R 200 (236)
T COG3826 124 PTPLLLQYGPGDYNCLHQDLYGEL---VFPLQVAILLSEPGTDFTGGEFVLVEQRPRMQSRPTVVPLRQGDGVVFAVRDR 200 (236)
T ss_pred CCceeEEecCCccchhhhhhhhce---eeeeeEEEeccCCCCcccCceEEEEecccccccCCceeeccCCceEEEEeecC
Confidence 345788999999999999975431 12356788899864 7999987543 4567889999999987643
Q ss_pred --CC---CCCCccccccCCCccCeEEEEEe
Q psy6259 200 --NT---LLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 --~g---~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+| -.-.-.-|++.-+.+|.++.+-.
T Consensus 201 Pv~gtrG~~r~~lRHGvS~lRSG~R~t~Gi 230 (236)
T COG3826 201 PVQGTRGWYRVPLRHGVSRLRSGERHTVGI 230 (236)
T ss_pred cccCccCccccchhcchhhhhcccceeeEE
Confidence 22 22345779999999999987643
No 26
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=94.87 E-value=0.25 Score=41.08 Aligned_cols=100 Identities=21% Similarity=0.244 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhccCCCcccccccCCceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCC------
Q psy6259 106 FLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPS------ 179 (227)
Q Consensus 106 ~~~~i~~ri~~~~g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~------ 179 (227)
.+..|.++++..+++... ..+...|..|.+|+.-.||.|..... .+.-++++.+ |.+-.|--
T Consensus 96 ~l~~L~~~~~~~~~~~~~----~p~a~LvN~Y~~G~~mg~H~D~~E~~-~~~pI~SvSL-------G~~~~F~~~~~~~~ 163 (213)
T PRK15401 96 SFLALAQRAAAAAGFPGF----QPDACLINRYAPGAKLSLHQDKDERD-FRAPIVSVSL-------GLPAVFQFGGLKRS 163 (213)
T ss_pred HHHHHHHHHHHHcCCCCC----CCCEEEEEeccCcCccccccCCCccc-CCCCEEEEeC-------CCCeEEEecccCCC
Confidence 678888888887776322 44568889999999999999975322 1333455443 22222321
Q ss_pred -CceEEecccccEEEEEecCCCCCCCCccccccCCCccC-------eEEEEE
Q psy6259 180 -LNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG-------NKWGKL 223 (227)
Q Consensus 180 -~~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G-------~K~i~~ 223 (227)
...+|.-..|++||+... ....+|++-++..| .|+.+|
T Consensus 164 ~~~~~l~L~~Gdllvm~G~------sr~~~HgVp~~~~~~~p~~g~~RINLT 209 (213)
T PRK15401 164 DPLQRILLEHGDVVVWGGP------SRLRYHGILPLKAGEHPLTGECRINLT 209 (213)
T ss_pred CceEEEEeCCCCEEEECch------HhheeccCCcCCCCcCCCCCCCeEEEE
Confidence 136899999999998543 12467999888765 466665
No 27
>KOG3200|consensus
Probab=94.27 E-value=0.11 Score=41.70 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=58.2
Q ss_pred EeccCCcEEEEccCCCHHHHHHHHHHccCCeee-------cEEeecCCceeeeeeeeEEEEeCCCCCCCcHHHHHHHHHH
Q psy6259 42 ELYLDPRVVKIHDAIYDSEINRIIELSKGKVER-------GKVVNYGDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRI 114 (227)
Q Consensus 42 ~ls~~p~I~~~~~fls~~Ec~~li~~~~~~~~~-------s~~~~~~~~~~~~~R~s~~~~l~~~~~~~~~~~~~i~~ri 114 (227)
++...|.++.++||+++||-..+++..+...++ -.+.+. +|+. -....+++ .-.+-.+.+..+|
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNy-GGvv-----h~~glipe---elP~wLq~~v~ki 77 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNY-GGVV-----HKTGLIPE---ELPPWLQYYVDKI 77 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhc-CCcc-----ccCCcCcc---ccCHHHHHHHHHh
Confidence 566778889999999999999998887632221 111111 1110 01112222 2345566677777
Q ss_pred HhccCCCcccccccCCceEEEEeCCCCcceeeeeCCCC
Q psy6259 115 QDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPR 152 (227)
Q Consensus 115 ~~~~g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~ 152 (227)
+.. |+-.. ...-..|..|.+||-.-+|.|+..-
T Consensus 78 nnl-glF~s----~~NHVLVNeY~pgqGImPHtDGPaf 110 (224)
T KOG3200|consen 78 NNL-GLFKS----PANHVLVNEYLPGQGIMPHTDGPAF 110 (224)
T ss_pred hcc-cccCC----CcceeEeecccCCCCcCcCCCCCcc
Confidence 642 33211 2333677889999999999998643
No 28
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=94.25 E-value=0.79 Score=37.55 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhccCCCcccccccCCceEEEEeCCCCcceeeeeCCCCCCCCce--EEEEEEeecCCC-CCceeeeCCCc
Q psy6259 105 PFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWR--LASFMFYLTDVE-LGGATIFPSLN 181 (227)
Q Consensus 105 ~~~~~i~~ri~~~~g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R--~~T~liYLnd~~-~GGeT~Fp~~~ 181 (227)
+....+...+...+|.+.. .-|..-+..|.+|+.-.||.|.... ..+ ++++.+=.+..+ -||... -...
T Consensus 85 p~l~~~~~~~~~~~g~~~~----~~ea~Lvn~Y~pGd~ig~HqD~~e~---~~~~~v~slSLg~~~~F~~~~~~r-~~~~ 156 (194)
T COG3145 85 PPLLALFHDLFGAAGYPFE----GPEAVLVNRYRPGASIGWHQDKDEE---DDRPPVASLSLGAPCIFRLRGRRR-RGPG 156 (194)
T ss_pred CccHHHHHHHHHHhcCCCC----ChhheeEEeccCCCccccccccccc---cCCCceEEEecCCCeEEEeccccC-CCCc
Confidence 3344566666677888776 7788999999999999999998765 333 455544344443 255544 3446
Q ss_pred eEEecccccEEEEEecCCCCCCCCccccccCC
Q psy6259 182 LTVFPEKGSAVFWYNAHANTLLDYRMYHSGCP 213 (227)
Q Consensus 182 ~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~p 213 (227)
.++.-..|++|++--.- ...+|...|
T Consensus 157 ~~~~L~~Gdvvvm~G~~------r~~~~h~~p 182 (194)
T COG3145 157 LRLRLEHGDVVVMGGPS------RLAWHHIIP 182 (194)
T ss_pred eeEEecCCCEEEecCCc------ccccccccc
Confidence 78999999999997532 255664444
No 29
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=91.39 E-value=1.1 Score=35.95 Aligned_cols=86 Identities=17% Similarity=0.110 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhccCCCcccccccCCceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCC-CCceeeeCCCceE
Q psy6259 105 PFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVE-LGGATIFPSLNLT 183 (227)
Q Consensus 105 ~~~~~i~~ri~~~~g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~-~GGeT~Fp~~~~~ 183 (227)
+.+..|.+++++.+|+... ..+..-|..|.+|+.-.||.|.... ....-++++.+=..-++ -||.+. .....+
T Consensus 74 ~~L~~L~~~v~~~~g~~~~----~~n~~LvN~Y~~Gd~mg~H~D~~e~-~~~~pI~SvSLG~~r~F~~~~~~~-~~~~~~ 147 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDF----QPDACLVNRYAPGATLSLHQDRDEP-DLRAPLLSVSLGLPAIFLIGGLKR-NDPPKR 147 (169)
T ss_pred HHHHHHHHHHHHHhCCCCC----CCCEEEEEeecCCCccccccccccc-cCCCCEEEEeCCCCEEEEecCCcC-CCceEE
Confidence 6788899999988887433 4566788889999999999995322 11233444331111111 133221 112467
Q ss_pred EecccccEEEEEe
Q psy6259 184 VFPEKGSAVFWYN 196 (227)
Q Consensus 184 v~P~~G~al~f~~ 196 (227)
+.-..|++||+.-
T Consensus 148 l~L~sGsllvM~G 160 (169)
T TIGR00568 148 LRLHSGDVVIMGG 160 (169)
T ss_pred EEeCCCCEEEECC
Confidence 8999999999864
No 30
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=91.32 E-value=1.7 Score=37.21 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=71.6
Q ss_pred cHHHHHHHHHHHhccCCCcccccccCCceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC---
Q psy6259 104 HPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL--- 180 (227)
Q Consensus 104 ~~~~~~i~~ri~~~~g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~--- 180 (227)
..++..+.+.+ .-++- ..+.+++..|+.|+-++--.+ ......++++=|+.+..||..++-+.
T Consensus 32 ~~i~~EI~kh~----~e~V~----~~~~i~i~~f~~~~~~~~~~~------~~~~~sr~lvCi~sakkGG~iii~~~~~~ 97 (266)
T PF06822_consen 32 KIILSEIEKHI----NEPVY----VNNLISIQVFDKGQCYKSRIQ------DNSSLSRILVCIQSAKKGGCIIIRNTISN 97 (266)
T ss_pred HHHHHHHHHhc----CCeEE----ecCcEEEEEEeCCCceecccc------CCCcceeEEEEeeccccCCeEEEeecccC
Confidence 34555555555 33333 566799999999997753221 13456789999999999999886554
Q ss_pred -ceEEecccccEEEEEecCCCCCCCCccccccCCCccCeEEEEEe
Q psy6259 181 -NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 181 -~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
.-.++|..|.||+-.+ -....+.+|.+|.-.+++.
T Consensus 98 ~kkii~~~~~~aVlLsp---------l~~y~Vs~V~~G~~i~i~l 133 (266)
T PF06822_consen 98 DKKIITPNQNMAVLLSP---------LADYDVSNVTKGSMIIIVL 133 (266)
T ss_pred CceEEecCCCeEEEecc---------hhheEEEEecCCcEEEEEE
Confidence 5679999999999876 4788899999998776653
No 31
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=85.45 E-value=2.4 Score=39.83 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=28.0
Q ss_pred EEecccccEEEEEecCCCCCCCCccccccCCC------ccCeEEEEEecC
Q psy6259 183 TVFPEKGSAVFWYNAHANTLLDYRMYHSGCPV------ALGNKWGKLLLS 226 (227)
Q Consensus 183 ~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV------~~G~K~i~~~W~ 226 (227)
+|.-+.|++|+|||. +.|++.|. ..|.+-+++.|.
T Consensus 436 sv~~~~gr~i~fPN~---------~qhrv~~f~L~D~tkpGhrkil~lfL 476 (501)
T PF14033_consen 436 SVETKEGRLIAFPNT---------LQHRVSPFELADPTKPGHRKILALFL 476 (501)
T ss_pred cEEccCCcEEeccch---------hhhccCCccccCCCCCCcEEEEEEEe
Confidence 688899999999995 67877754 458888888774
No 32
>KOG3959|consensus
Probab=84.75 E-value=0.78 Score=38.62 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=54.6
Q ss_pred CCcEEEEccCCCHHHHHHHHHHccCC-eeecEEeecCC--c--ee---eeeeeeEEEEeCCCCCCCcHHHHHHHHHHHhc
Q psy6259 46 DPRVVKIHDAIYDSEINRIIELSKGK-VERGKVVNYGD--T--IY---VDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDM 117 (227)
Q Consensus 46 ~p~I~~~~~fls~~Ec~~li~~~~~~-~~~s~~~~~~~--~--~~---~~~R~s~~~~l~~~~~~~~~~~~~i~~ri~~~ 117 (227)
-|.|.+++||||.+|-.+|++....- +..|.-...+. | ++ ...|+..-+ ......+.+..|+.++
T Consensus 71 ~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~F~-------G~P~~~~~v~rrm~~y 143 (306)
T KOG3959|consen 71 IPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDTFV-------GMPEYADMVLRRMSEY 143 (306)
T ss_pred cCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCccc-------CCchHHHHHHHHhhcc
Confidence 37899999999999999999998642 22221111111 1 11 233333322 2345677777888776
Q ss_pred cCCCcccccccCCceEEEEeCC--CCcceeeeeCCC
Q psy6259 118 TNLVIGREERYKGPLQINNYGL--GGHYDLHCDATP 151 (227)
Q Consensus 118 ~g~~~~~~~~~~e~~~v~rY~~--G~~y~~H~D~~~ 151 (227)
-++.--. -.|... +.|++ |....+|.|..+
T Consensus 144 p~l~gfq---p~EqCn-LeYep~kgsaIdpH~DD~W 175 (306)
T KOG3959|consen 144 PVLKGFQ---PFEQCN-LEYEPVKGSAIDPHQDDMW 175 (306)
T ss_pred chhhccC---cHHHcC-cccccccCCccCccccchh
Confidence 4432100 111111 35764 889999999864
No 33
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=81.81 E-value=13 Score=31.79 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=48.1
Q ss_pred ceEEEEeCCC------CcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCCc-eEEecccccEEEEEecCC----
Q psy6259 131 PLQINNYGLG------GHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLN-LTVFPEKGSAVFWYNAHA---- 199 (227)
Q Consensus 131 ~~~v~rY~~G------~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~-~~v~P~~G~al~f~~~~~---- 199 (227)
.+++.+|.+- -...+|.|.. .+|+|+. |. .||-=+....+ +.|+|..|..|| |..+
T Consensus 117 ~lrl~~YP~~~~~~~~~g~~~HtD~g--------~lTlL~q--d~-v~GLqV~~~g~Wi~V~p~p~a~vV--NiGD~l~~ 183 (262)
T PLN03001 117 NITVSYYPPCPQPELTLGLQSHSDFG--------AITLLIQ--DD-VEGLQLLKDAEWLMVPPISDAILI--IIADQTEI 183 (262)
T ss_pred hheeecCCCCCCcccccCCcCCcCCC--------eeEEEEe--CC-CCceEEeeCCeEEECCCCCCcEEE--EccHHHHH
Confidence 4788888652 1256788764 3677644 33 25533333222 689999998888 4322
Q ss_pred --CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 --NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 --~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+|.. ..+.|++.-.....||.+..
T Consensus 184 ~tng~~-~S~~HRVv~~~~~~R~Sia~ 209 (262)
T PLN03001 184 ITNGNY-KSAQHRAIANANKARLSVAT 209 (262)
T ss_pred HhCCcc-ccccceEEcCCCCCEEEEEE
Confidence 3322 26889998655567887653
No 34
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=80.41 E-value=13 Score=33.09 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=49.9
Q ss_pred ceEEEEeCCC------CcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC-ceEEecccccEEEEEecCC----
Q psy6259 131 PLQINNYGLG------GHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL-NLTVFPEKGSAVFWYNAHA---- 199 (227)
Q Consensus 131 ~~~v~rY~~G------~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~-~~~v~P~~G~al~f~~~~~---- 199 (227)
.+++.+|.+- -...+|.|... +|+| +.|...||-=+...- =+.|.|..|.+|| |..+
T Consensus 204 ~lRl~~YPp~~~~~~~~g~~~HTD~g~--------lTlL--~qd~~v~GLQV~~~g~Wi~V~p~pg~lVV--NiGD~Le~ 271 (348)
T PLN00417 204 DTRFNMYPPCPRPDKVIGVKPHADGSA--------FTLL--LPDKDVEGLQFLKDGKWYKAPIVPDTILI--NVGDQMEI 271 (348)
T ss_pred eeeeeecCCCCCcccccCCcCccCCCc--------eEEE--EecCCCCceeEeECCeEEECCCCCCcEEE--EcChHHHH
Confidence 4789999652 12457888643 5655 445444554344332 2679999999888 3322
Q ss_pred --CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 --NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 --~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+|.. ..++|++.+...+.||.+..
T Consensus 272 ~Tng~~-kSt~HRVv~~~~~~R~Si~f 297 (348)
T PLN00417 272 MSNGIY-KSPVHRVVTNREKERISVAT 297 (348)
T ss_pred HhCCee-cccceEEecCCCCCEEEEEE
Confidence 2222 36899997665678887753
No 35
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=79.85 E-value=16 Score=32.50 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=49.0
Q ss_pred CceEEEEeCCCC------cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCCc-eEEecccccEEEEEe----cC
Q psy6259 130 GPLQINNYGLGG------HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLN-LTVFPEKGSAVFWYN----AH 198 (227)
Q Consensus 130 e~~~v~rY~~G~------~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~-~~v~P~~G~al~f~~----~~ 198 (227)
..+++.+|.+-. ...+|.|... +|+|+. |. .||-=+...-+ +.|.|..|.+||--- .|
T Consensus 200 ~~lRl~~YPp~~~~~~~~g~~aHTD~g~--------lTlL~Q--d~-v~GLQV~~~g~Wv~V~p~pgalVVNiGD~Le~w 268 (341)
T PLN02984 200 GVIRVYRYPQCSNEAEAPGMEVHTDSSV--------ISILNQ--DE-VGGLEVMKDGEWFNVKPIANTLVVNLGDMMQVI 268 (341)
T ss_pred ceEEEEeCCCCCCcccccCccCccCCCc--------eEEEEe--CC-CCCeeEeeCCceEECCCCCCeEEEECChhhhhh
Confidence 358999997632 2457887643 676654 32 35533333322 679999999998321 12
Q ss_pred CCCCCCCccccccC-CCccCeEEEEEe
Q psy6259 199 ANTLLDYRMYHSGC-PVALGNKWGKLL 224 (227)
Q Consensus 199 ~~g~~d~~~~H~g~-pV~~G~K~i~~~ 224 (227)
.+|.. ..+.|++. +-....||.+..
T Consensus 269 TNg~~-kSt~HRVv~~~~~~~R~Sia~ 294 (341)
T PLN02984 269 SDDEY-KSVLHRVGKRNKKKERYSICY 294 (341)
T ss_pred cCCee-eCCCCccccCCCCCCeEEEEE
Confidence 23322 36889994 433457887653
No 36
>PHA02985 hypothetical protein; Provisional
Probab=79.45 E-value=19 Score=30.87 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=69.3
Q ss_pred CcHHHHHHHHHHHhccCCCcccccccCCceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCC---
Q psy6259 103 DHPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPS--- 179 (227)
Q Consensus 103 ~~~~~~~i~~ri~~~~g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~--- 179 (227)
...+...+.+++.+ ++- ....+++..|+.|+.|. |.+ ..+...+++=+..+..||..+-.+
T Consensus 38 ~~~I~~EI~~~i~E----~V~----~~n~i~i~~f~~~~~~~-~~~-------~~~~SkilICiqsAkkGG~iIi~~~~~ 101 (271)
T PHA02985 38 QKIILDEIEQYIDE----TVL----VKNLISIEVFNKKKKYY-QNI-------PSRLSKIIICIQSAKKGGCIIIINNIT 101 (271)
T ss_pred hhHHHHHHHHhcCC----eEE----ecceeEEEEEcCCcceE-eeC-------CCCceeEEEEEeecccCCEEEEecccc
Confidence 34566666666643 222 45568888999886532 222 456678999999999999987622
Q ss_pred -CceEEecccccEEEEEecCCCCCCCCccccccCCCccCeEEEEE
Q psy6259 180 -LNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKL 223 (227)
Q Consensus 180 -~~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~ 223 (227)
..-.+.|..|.||+-.+ .+-..+.+|.+|.-.+++
T Consensus 102 ~~K~ii~~~~n~aVlLSP---------Ls~Y~Vs~V~kGsli~i~ 137 (271)
T PHA02985 102 NNKKIITLNINHIIILSP---------LSKYTVSKVSKGSLIIIV 137 (271)
T ss_pred cCceEEecCCCeEEEecc---------hhhceEEEecCCcEEEEE
Confidence 25679999999999876 478889999999876665
No 37
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=79.12 E-value=2 Score=35.65 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=29.2
Q ss_pred ceEEecccccEEEEEecCCCCCCCCccccccCCC--ccCeEEEEEec
Q psy6259 181 NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPV--ALGNKWGKLLL 225 (227)
Q Consensus 181 ~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV--~~G~K~i~~~W 225 (227)
.+.++-++|++|||.|. +++|+..+. ..|.|+..+.|
T Consensus 220 ~~~~~~~~GDlli~dN~--------~~lHgR~~~~~~~~~R~L~R~~ 258 (258)
T PF02668_consen 220 TYRHRWQPGDLLIWDNH--------RVLHGRTAFDDPDGDRHLLRVW 258 (258)
T ss_dssp EEEEE--TTEEEEEETT--------TEEEEE--E-STTSSEEEEEEE
T ss_pred cccccCCCceEEEEcCC--------eeEecCCCCCCCCCCEEEEEeC
Confidence 46788999999999996 799999998 67899999988
No 38
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=78.86 E-value=14 Score=32.14 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=50.0
Q ss_pred CceEEEEeCCC-----C-cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCC-C--ceEEecccccEEEEEecCC-
Q psy6259 130 GPLQINNYGLG-----G-HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPS-L--NLTVFPEKGSAVFWYNAHA- 199 (227)
Q Consensus 130 e~~~v~rY~~G-----~-~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~-~--~~~v~P~~G~al~f~~~~~- 199 (227)
..+++.+|.+- + .-.+|.|.. .+|+| +.|...||-=+... . =+.|.|..|.+|| |..+
T Consensus 149 ~~lr~~~YP~~p~~~~~~g~~~HtD~g--------~lTlL--~qd~~~~GLqV~~~~~g~Wi~V~p~pga~vV--NiGD~ 216 (300)
T PLN02365 149 SQFRINKYNFTPETVGSSGVQIHTDSG--------FLTIL--QDDENVGGLEVMDPSSGEFVPVDPLPGTLLV--NLGDV 216 (300)
T ss_pred cceeeeecCCCCCccccccccCccCCC--------ceEEE--ecCCCcCceEEEECCCCeEEecCCCCCeEEE--EhhHH
Confidence 46788999431 1 245777764 36666 34433455444432 2 2689999999998 4322
Q ss_pred -----CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 -----NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 -----~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+|.. ..+.|++...-..+||.+..
T Consensus 217 l~~~TNG~~-~St~HRVv~~~~~~R~Si~~ 245 (300)
T PLN02365 217 ATAWSNGRL-CNVKHRVQCKEATMRISIAS 245 (300)
T ss_pred HHHHhCCce-ecccceeEcCCCCCEEEEEE
Confidence 2322 36899997655557887754
No 39
>KOG4176|consensus
Probab=76.39 E-value=41 Score=29.81 Aligned_cols=170 Identities=18% Similarity=0.129 Sum_probs=90.8
Q ss_pred ceeeCceEEEEeccCCc-EEEEccCCCHHHHHHHHHHccC-CeeecEEeecCC------ceeeeeeeeEE-EE--eCCCC
Q psy6259 32 FLKIGPLKVEELYLDPR-VVKIHDAIYDSEINRIIELSKG-KVERGKVVNYGD------TIYVDTRLSKV-YF--LYPEI 100 (227)
Q Consensus 32 ~l~~~P~k~e~ls~~p~-I~~~~~fls~~Ec~~li~~~~~-~~~~s~~~~~~~------~~~~~~R~s~~-~~--l~~~~ 100 (227)
......+|+...-..|. +.++.+++++.+-+.++..... .+.- .. .++. |..-.+++++. -| +++
T Consensus 112 ~n~~~~~~l~~~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~~-~~-~gk~R~~iq~G~~f~y~~~~~d~~~~~~p-- 187 (323)
T KOG4176|consen 112 VNVVEGLKLRDEVFIPGELSLIVDFVTELEEKGLIGALVDETFTY-QE-SGKHREVIQLGYPFDYRTNNVDESKPVDP-- 187 (323)
T ss_pred hhhhhhheeeccccChhhceehhhhhhhhHHhhhhccccccccee-ec-cccceeeeecCceeccCCCcccccCccCC--
Confidence 33344455555555555 7889999999888777766532 2211 00 0110 01112222111 01 111
Q ss_pred CCCcHHHHHHHHHHHhccCCCcccccccCCceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCCC--Ccee---
Q psy6259 101 FGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVEL--GGAT--- 175 (227)
Q Consensus 101 ~~~~~~~~~i~~ri~~~~g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~--GGeT--- 175 (227)
...+++.+.+|+-..--++. .-..+-+..|++|+.-.+|+|...- .+. .+.+.+|+++.. |=..
T Consensus 188 --iPs~~~~ii~rlv~~~~ip~-----~pd~~~iN~Ye~G~~i~ph~~~~~F---~~P-i~slS~lSe~~m~Fg~~~~~~ 256 (323)
T KOG4176|consen 188 --IPSLFKSIIDRLVSWRVIPE-----RPDQCTINFYEPGDGIPPHIDHSAF---LDP-ISSLSFLSECTMEFGHGLLSD 256 (323)
T ss_pred --CchHHHHHHHHhhhhccCCC-----CCCeeEEEeeCCCCCCCCCCChHHh---cCc-eEEEEeecceeEEeccccccc
Confidence 23466677777655433332 2455788999999999999966442 333 344445776420 1111
Q ss_pred ---eeCCCceEEecccccEEEEEecCCCCCCCCccccccCCCccCeEEEEE
Q psy6259 176 ---IFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKL 223 (227)
Q Consensus 176 ---~Fp~~~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~ 223 (227)
.|-. -+++.-+.|++++-.+...| ...|.++| ....+..+|
T Consensus 257 ~~~~~~g-~~s~p~~~g~~lvi~~~~ad-----~~~~~~~~-~~~kRisit 300 (323)
T KOG4176|consen 257 NIGNFRG-SLSLPLRYGSVLVIRGRSAD-----VAPHCIRP-SRNKRISIT 300 (323)
T ss_pred Ccccccc-ccccccccCeEEEeCCCccc-----ccccccCC-CCCceEEEE
Confidence 1211 35677788888887764332 56788888 344555444
No 40
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.18 E-value=6.6 Score=34.20 Aligned_cols=70 Identities=23% Similarity=0.257 Sum_probs=49.4
Q ss_pred cceeeeeCCCCCCCCceEEEEEEeecCCC-CCceeee-CCC-------------------ceEEecccccEEEEEecCCC
Q psy6259 142 HYDLHCDATPRDEGLWRLASFMFYLTDVE-LGGATIF-PSL-------------------NLTVFPEKGSAVFWYNAHAN 200 (227)
Q Consensus 142 ~y~~H~D~~~~~~~~~R~~T~liYLnd~~-~GGeT~F-p~~-------------------~~~v~P~~G~al~f~~~~~~ 200 (227)
.-.||.|.........-...+.+-|-|.. +-|.|.+ |.. .+-|.-++|++|+|..
T Consensus 132 ~t~~HqD~~~~~~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~~~r~d~~~y~~~~~~pv~lekGDallF~~---- 207 (299)
T COG5285 132 ATRWHQDYPLVSPGYPALVNAWIALCDFTEDNGATLVVPGSHKWDVIPERPDHETYLERNAVPVELEKGDALLFNG---- 207 (299)
T ss_pred ccccccccccccCCccceEEEEEeccccccccCceEEEecccccccCCCCCCccchhhhcceeeeecCCCEEEEcc----
Confidence 45699996554444455667888888864 4577754 321 3568889999999977
Q ss_pred CCCCCccccccCCCccCeEE
Q psy6259 201 TLLDYRMYHSGCPVALGNKW 220 (227)
Q Consensus 201 g~~d~~~~H~g~pV~~G~K~ 220 (227)
.++|+..--+.+.+.
T Consensus 208 -----~L~HaA~aNrT~~~R 222 (299)
T COG5285 208 -----SLWHAAGANRTSADR 222 (299)
T ss_pred -----hhhhhhhcCCCCccc
Confidence 689998888877443
No 41
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=75.39 E-value=25 Score=31.19 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=49.6
Q ss_pred CceEEEEeCCCC------cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC-ceEEecccccEEEEEecCC---
Q psy6259 130 GPLQINNYGLGG------HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL-NLTVFPEKGSAVFWYNAHA--- 199 (227)
Q Consensus 130 e~~~v~rY~~G~------~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~-~~~v~P~~G~al~f~~~~~--- 199 (227)
..+++.+|.+-. -..+|.|.. .+|+|+ .|...||-=++... =+.|.|..|.+|| |..+
T Consensus 190 ~~lrl~~YP~~~~~~~~~g~~~HTD~g--------~lTlL~--qd~~v~GLQV~~~g~Wi~V~p~pg~lVV--NiGD~L~ 257 (337)
T PLN02639 190 QHMAVNYYPPCPEPELTYGLPAHTDPN--------ALTILL--QDQQVAGLQVLKDGKWVAVNPHPGAFVI--NIGDQLQ 257 (337)
T ss_pred cEEEEEcCCCCCCcccccCCCCCcCCC--------ceEEEE--ecCCcCceEeecCCeEEeccCCCCeEEE--echhHHH
Confidence 357888887621 245787764 356653 34334554444432 2789999999998 4332
Q ss_pred ---CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 ---NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 ---~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+|.. ..+.|++...-...||.+..
T Consensus 258 ~~TNG~~-kSt~HRVv~~~~~~R~Sia~ 284 (337)
T PLN02639 258 ALSNGRY-KSVWHRAVVNTDKERMSVAS 284 (337)
T ss_pred HHhCCee-eccCcccccCCCCCEEEEEE
Confidence 2322 26899985444467887753
No 42
>PLN02904 oxidoreductase
Probab=75.11 E-value=24 Score=31.60 Aligned_cols=80 Identities=13% Similarity=0.029 Sum_probs=49.5
Q ss_pred CceEEEEeCCC------CcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC--ceEEecccccEEEEEecCC--
Q psy6259 130 GPLQINNYGLG------GHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL--NLTVFPEKGSAVFWYNAHA-- 199 (227)
Q Consensus 130 e~~~v~rY~~G------~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~--~~~v~P~~G~al~f~~~~~-- 199 (227)
..+++.+|.+- -.-.+|.|.. .+|+|+ .|+ ||-=+.... =+.|+|..|.+|| |..+
T Consensus 208 ~~lrl~~YPp~p~~~~~~g~~~HtD~g--------~lTlL~--qd~--~GLQV~~~~g~Wi~V~p~pgalVV--NiGD~L 273 (357)
T PLN02904 208 QVMAVNCYPACPEPEIALGMPPHSDFG--------SLTILL--QSS--QGLQIMDCNKNWVCVPYIEGALIV--QLGDQV 273 (357)
T ss_pred cEEEeeecCCCCCcccccCCcCccCCC--------ceEEEe--cCC--CeeeEEeCCCCEEECCCCCCeEEE--EccHHH
Confidence 35788889762 1244788764 367775 453 453334322 3789999999888 4332
Q ss_pred ----CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 ----NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 ----~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+|.. ..+.|++.......||.+..
T Consensus 274 e~~TNG~~-kSt~HRVv~~~~~~R~Si~~ 301 (357)
T PLN02904 274 EVMSNGIY-KSVVHRVTVNKDYKRLSFAS 301 (357)
T ss_pred HHHhCCee-eccCCcccCCCCCCEEEEEE
Confidence 2222 36899996545567887754
No 43
>PLN02485 oxidoreductase
Probab=74.51 E-value=15 Score=32.28 Aligned_cols=83 Identities=13% Similarity=0.063 Sum_probs=49.9
Q ss_pred ceEEEEeCCCC----------cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCCc--eEEecccccEEEEEe--
Q psy6259 131 PLQINNYGLGG----------HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLN--LTVFPEKGSAVFWYN-- 196 (227)
Q Consensus 131 ~~~v~rY~~G~----------~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~--~~v~P~~G~al~f~~-- 196 (227)
.+++.+|.+-. .-.+|.|.. .+|+| +.|...||-=+....+ +.|+|..|.+||---
T Consensus 185 ~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g--------~lTlL--~qd~~~~GLqV~~~~g~Wi~V~p~pg~~vVNiGD~ 254 (329)
T PLN02485 185 VMRIIGYPGVSNLNGPPENDIGCGAHTDYG--------LLTLV--NQDDDITALQVRNLSGEWIWAIPIPGTFVCNIGDM 254 (329)
T ss_pred eEEEEeCCCCccccCCcccCcccccccCCC--------eEEEE--eccCCCCeeeEEcCCCcEEECCCCCCcEEEEhHHH
Confidence 47888997531 245788764 35665 4454446644443322 789999999887311
Q ss_pred --cCCCCCCCCccccccCCCccCeEEEEEe
Q psy6259 197 --AHANTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 197 --~~~~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
.+.+|.. ..+.|++.......||.+..
T Consensus 255 L~~~TnG~~-~St~HRVv~~~~~~R~Si~~ 283 (329)
T PLN02485 255 LKIWSNGVY-QSTLHRVINNSPKYRVCVAF 283 (329)
T ss_pred HHHHHCCEe-eCCCceecCCCCCCeEEEEE
Confidence 1222322 25889998665557887653
No 44
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=74.32 E-value=6.1 Score=28.70 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=35.3
Q ss_pred EEEEEeecCCCCCceeeeCC-CceEEecccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 160 ASFMFYLTDVELGGATIFPS-LNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 160 ~T~liYLnd~~~GGeT~Fp~-~~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
++.+.-++|..+|+...|.. ..+.|.-..|....|.| ...|.++|+..|
T Consensus 3 ~~~v~~~~~l~~g~~~~~~~~~~i~v~~~~g~~~A~~~---------~CpH~g~~L~~G 52 (106)
T PRK09965 3 RIYACPVADLPEGEALRVDTSPVIALFNVGGEFYAIDD---------RCSHGNASLSEG 52 (106)
T ss_pred cEEeeeHHHcCCCCeEEEeCCCeEEEEEECCEEEEEeC---------cCCCCCCCCCce
Confidence 34566788888888776654 34556556788777777 699999999654
No 45
>KOG0143|consensus
Probab=74.24 E-value=27 Score=30.87 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=54.2
Q ss_pred ceEEEEeCCCC------cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeC-C-CceEEecccccEEEEEecCC---
Q psy6259 131 PLQINNYGLGG------HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFP-S-LNLTVFPEKGSAVFWYNAHA--- 199 (227)
Q Consensus 131 ~~~v~rY~~G~------~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp-~-~~~~v~P~~G~al~f~~~~~--- 199 (227)
.+++.+|.+-- -..+|.|... +|+ -|.|...||-=++. + .=+.|+|.+|..|| |..+
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~~~--------lTi--Llqd~~V~GLQv~~~dg~Wi~V~P~p~a~vV--NiGD~l~ 244 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDKSF--------LTI--LLQDDDVGGLQVFTKDGKWIDVPPIPGAFVV--NIGDMLQ 244 (322)
T ss_pred EEEEeecCCCcCccccccccCccCcCc--------eEE--EEccCCcCceEEEecCCeEEECCCCCCCEEE--EcccHHh
Confidence 67888898631 3678888642 344 46766778888885 3 23789999988777 4322
Q ss_pred ---CCCCCCccccccCCCccCeEEEEE
Q psy6259 200 ---NTLLDYRMYHSGCPVALGNKWGKL 223 (227)
Q Consensus 200 ---~g~~d~~~~H~g~pV~~G~K~i~~ 223 (227)
||.. ....|++..-...+|+.+.
T Consensus 245 ~lSNG~y-kSv~HRV~~n~~~~R~Sia 270 (322)
T KOG0143|consen 245 ILSNGRY-KSVLHRVVVNGEKERISVA 270 (322)
T ss_pred HhhCCcc-cceEEEEEeCCCCceEEEE
Confidence 2322 2588999998888787654
No 46
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=73.09 E-value=4.7 Score=34.10 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=32.7
Q ss_pred ceEEecccccEEEEEecCCCCCCCCccccccCCCcc---CeEEEEEecC
Q psy6259 181 NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVAL---GNKWGKLLLS 226 (227)
Q Consensus 181 ~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~---G~K~i~~~W~ 226 (227)
.+.++-++|++|+|.|. +++|+-.+-.. +.||....|+
T Consensus 219 ~~~~~l~~Gdivi~DN~--------r~lHgR~~f~~~~~~~R~L~r~~i 259 (262)
T cd00250 219 QLTVKLEPGDLLIFDNR--------RVLHGRTAFSPRYGGDRWLKGCYV 259 (262)
T ss_pred EEEEEcCCCCEEEEech--------hhhcCCCCCCCCCCCceEEEEEEe
Confidence 57889999999999996 79999988765 5799998886
No 47
>PLN02216 protein SRG1
Probab=72.52 E-value=29 Score=31.09 Aligned_cols=82 Identities=20% Similarity=0.141 Sum_probs=49.1
Q ss_pred CceEEEEeCCC------CcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC-ceEEecccccEEEEEecCC---
Q psy6259 130 GPLQINNYGLG------GHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL-NLTVFPEKGSAVFWYNAHA--- 199 (227)
Q Consensus 130 e~~~v~rY~~G------~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~-~~~v~P~~G~al~f~~~~~--- 199 (227)
..+++.+|.+- --..+|.|.. .+|+| +.|...||-=+...- =+.|+|..|.+|| |..+
T Consensus 210 ~~lRl~~YPp~p~~~~~~G~~~HtD~g--------~lTlL--~q~~~v~GLQV~~~g~Wi~V~p~pgalvV--NiGD~L~ 277 (357)
T PLN02216 210 QSIRMNYYPPCPQPDQVIGLTPHSDAV--------GLTIL--LQVNEVEGLQIKKDGKWVSVKPLPNALVV--NVGDILE 277 (357)
T ss_pred heeEEeecCCCCCcccccCccCcccCc--------eEEEE--EecCCCCceeEEECCEEEECCCCCCeEEE--EcchhhH
Confidence 35788889652 1245777763 35655 443334554444432 2689999999888 4332
Q ss_pred ---CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 ---NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 ---~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
||.. ..+.|++.......||.+..
T Consensus 278 ~~TNG~~-kS~~HRVv~~~~~~R~Si~~ 304 (357)
T PLN02216 278 IITNGTY-RSIEHRGVVNSEKERLSVAT 304 (357)
T ss_pred hhcCCee-eccCceeecCCCCCEEEEEE
Confidence 2322 36889986544567887653
No 48
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=71.87 E-value=29 Score=30.59 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=49.9
Q ss_pred ceEEEEeCCC------CcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC-ceEEecccccEEEEEe----cCC
Q psy6259 131 PLQINNYGLG------GHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL-NLTVFPEKGSAVFWYN----AHA 199 (227)
Q Consensus 131 ~~~v~rY~~G------~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~-~~~v~P~~G~al~f~~----~~~ 199 (227)
.+++.+|.+- .-..+|.|... +|+| +.|...||-=+.... =+.|+|..|.+||--- .+.
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~g~--------lTlL--~qd~~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~l~~~T 228 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDAGG--------IILL--FQDDKVSGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVIT 228 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCCCe--------EEEE--EecCCCCCcCcccCCeEEECCCCCCeEEEEeCHHHHHHh
Confidence 4788999752 12557888742 5665 554334553344332 2679999998888321 122
Q ss_pred CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 ~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+|.. ..+.|++.....+.||.+..
T Consensus 229 ng~~-kS~~HRVv~~~~~~R~Si~~ 252 (321)
T PLN02299 229 NGKY-KSVMHRVVAQTDGNRMSIAS 252 (321)
T ss_pred CCce-ecccceeecCCCCCEEEEEE
Confidence 3333 36899997555678887653
No 49
>PLN02947 oxidoreductase
Probab=71.13 E-value=37 Score=30.61 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=49.2
Q ss_pred CceEEEEeCCCC------cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCCc-eEEecccccEEEEEecCC---
Q psy6259 130 GPLQINNYGLGG------HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLN-LTVFPEKGSAVFWYNAHA--- 199 (227)
Q Consensus 130 e~~~v~rY~~G~------~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~-~~v~P~~G~al~f~~~~~--- 199 (227)
..+++.+|.+.. ...+|.|.. .+|+|+. ++ .||-=+....+ +.|+|..|.+|| |..+
T Consensus 225 ~~lrln~YPp~p~~~~~~G~~~HTD~g--------~lTlL~Q-d~--v~GLQV~~~g~Wi~V~p~pga~VV--NvGD~Lq 291 (374)
T PLN02947 225 QMMVVNCYPACPEPELTLGMPPHSDYG--------FLTLLLQ-DE--VEGLQIMHAGRWVTVEPIPGSFVV--NVGDHLE 291 (374)
T ss_pred eeeeeecCCCCCCcccccCCCCccCCC--------ceEEEEe-cC--CCCeeEeECCEEEeCCCCCCeEEE--EeCceee
Confidence 456777887631 255788764 3677755 33 35544444322 679999998887 3322
Q ss_pred ---CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 ---NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 ---~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+|.. ..+.|++.......||.+..
T Consensus 292 ~~SNG~~-kS~~HRVv~~~~~~R~Sia~ 318 (374)
T PLN02947 292 IFSNGRY-KSVLHRVRVNSTKPRISVAS 318 (374)
T ss_pred eeeCCEE-eccccccccCCCCCEEEEEE
Confidence 2322 36889996544567887654
No 50
>PLN02276 gibberellin 20-oxidase
Probab=67.16 E-value=51 Score=29.50 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=49.6
Q ss_pred CceEEEEeCCCC------cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC-ceEEecccccEEEEEe----cC
Q psy6259 130 GPLQINNYGLGG------HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL-NLTVFPEKGSAVFWYN----AH 198 (227)
Q Consensus 130 e~~~v~rY~~G~------~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~-~~~v~P~~G~al~f~~----~~ 198 (227)
..+++.+|.+.. .-.+|.|.. .+|+|+ .| ..||-=+.... =+.|+|..|.+||--- .+
T Consensus 206 ~~lrl~~YP~~~~~~~~~g~~~HTD~g--------~lTlL~--Qd-~v~GLQV~~~g~Wi~V~p~pgalVVNiGD~L~~~ 274 (361)
T PLN02276 206 SIMRCNYYPPCQEPELTLGTGPHCDPT--------SLTILH--QD-QVGGLQVFVDNKWRSVRPRPGALVVNIGDTFMAL 274 (361)
T ss_pred ceeeeEeCCCCCCcccccCCccccCCc--------eeEEEE--ec-CCCceEEEECCEEEEcCCCCCeEEEEcHHHHHHH
Confidence 457888886531 245777764 356664 34 34554445432 2789999999998321 11
Q ss_pred CCCCCCCccccccCCCccCeEEEEEe
Q psy6259 199 ANTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 199 ~~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
.+|.. ..++|++..-....||.+..
T Consensus 275 TNG~~-kSt~HRVv~~~~~~R~Sia~ 299 (361)
T PLN02276 275 SNGRY-KSCLHRAVVNSERERRSLAF 299 (361)
T ss_pred hCCcc-ccccceeecCCCCCEEEEEE
Confidence 12322 36899986444567887653
No 51
>KOG4459|consensus
Probab=66.89 E-value=0.94 Score=41.53 Aligned_cols=64 Identities=20% Similarity=0.131 Sum_probs=50.7
Q ss_pred CceEEEEEEeecCCCCCceeeeCCC-----ceEEecccccEEEEEecCCCCCCCCccccccCCCccCeEEEEEecC
Q psy6259 156 LWRLASFMFYLTDVELGGATIFPSL-----NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLS 226 (227)
Q Consensus 156 ~~R~~T~liYLnd~~~GGeT~Fp~~-----~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~~W~ 226 (227)
.-+......|+||+++||+..|..- ...++|+.|+.+-|.... .-.|.+.+|+.|.+=.+..|.
T Consensus 364 ~~~~~~a~~~~~dd~~~~el~~t~~d~~t~~a~~k~~~~re~~~~~g~-------e~~~~~~~~~kg~e~~~~lw~ 432 (471)
T KOG4459|consen 364 TELDYFALLYLNDDFEGGELLFTEPDAKTYTAISKPECGRECAFSSGA-------ENPHGVKAVTKGLECAVALWP 432 (471)
T ss_pred HHHHhhccHhhcCccccccceecCCcccchhhccccccccchhhhccc-------cCccchhhhhhhhHHhhhcCc
Confidence 3467778999999999999998542 467999999999998854 357888999988766555553
No 52
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=66.84 E-value=30 Score=30.82 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=49.4
Q ss_pred CceEEEEeCCC------CcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC-ceEEecccccEEEEEecCC---
Q psy6259 130 GPLQINNYGLG------GHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL-NLTVFPEKGSAVFWYNAHA--- 199 (227)
Q Consensus 130 e~~~v~rY~~G------~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~-~~~v~P~~G~al~f~~~~~--- 199 (227)
..+++.+|.+- -.-.+|.|... +|+|+ .|. .||-=++... =+.|+|..|.+|| |..+
T Consensus 197 ~~lrl~~YPp~~~~~~~~G~~~HtD~g~--------lTlL~--Qd~-v~GLQV~~~g~Wi~V~p~pgalvV--NiGD~L~ 263 (348)
T PLN02912 197 QHMAINYYPPCPQPELTYGLPGHKDANL--------ITVLL--QDE-VSGLQVFKDGKWIAVNPIPNTFIV--NLGDQMQ 263 (348)
T ss_pred ceeeeeecCCCCChhhcCCcCCCcCCCc--------eEEEE--ECC-CCceEEEECCcEEECCCcCCeEEE--EcCHHHH
Confidence 45788889762 12457887643 56664 342 3554445432 2689999999888 4322
Q ss_pred ---CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 ---NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 ---~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+|.. ..+.|++...-.+.||.+..
T Consensus 264 ~~TNG~~-kSt~HRVv~~~~~~R~Sia~ 290 (348)
T PLN02912 264 VISNDKY-KSVLHRAVVNTDKERISIPT 290 (348)
T ss_pred HHhCCEE-EcccccccCCCCCCEEEEEE
Confidence 3322 36899986444567887653
No 53
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=66.73 E-value=12 Score=30.50 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHHhccCCCcccccccCCce----EEEEeCC--CC-----cceeeeeCCCCCCCCceEEEEEEeecCCCC
Q psy6259 103 DHPFLYKIQTRIQDMTNLVIGREERYKGPL----QINNYGL--GG-----HYDLHCDATPRDEGLWRLASFMFYLTDVEL 171 (227)
Q Consensus 103 ~~~~~~~i~~ri~~~~g~~~~~~~~~~e~~----~v~rY~~--G~-----~y~~H~D~~~~~~~~~R~~T~liYLnd~~~ 171 (227)
.+++++.|.....++++.... ..+++ +-.|+.. +. -=..|.|+. ...++++|--+.+ +
T Consensus 69 ~~~~~~~ll~~~~~~~~~~~~----~~~~~~i~vHq~Ri~a~~~~~g~ptPEGiH~DG~------d~v~~~li~r~Ni-~ 137 (195)
T PF10014_consen 69 SNPVLQALLRFDAEIFGWDED----SSEPWHIGVHQIRIIATPDEPGEPTPEGIHRDGV------DFVFIHLINRHNI-E 137 (195)
T ss_dssp TSHHHHHHHHHHHHHHHCCS-----GGGEEEEEEEEEEEETTTS--B--STTSSB--SS------SEEEEEEEEEESE-E
T ss_pred cCHHHHHHHHHHHHHhccccc----CCCCEEEEEEEEEEEEecCccCCcCCCCccCCCC------CEEEEEEEcCCCc-c
Confidence 356777777776666544331 22333 3345543 21 134666653 3455555555455 6
Q ss_pred CceeeeCCC-----ceEEecccccEEEEEecCCCCCCCCccccccCCCcc
Q psy6259 172 GGATIFPSL-----NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVAL 216 (227)
Q Consensus 172 GGeT~Fp~~-----~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~ 216 (227)
||+|..... ....--+.|+.+++. |.+.+|.+.||..
T Consensus 138 GG~s~i~~~~~~~~~~~~l~~p~d~l~~~--------D~~~~H~vtpI~~ 179 (195)
T PF10014_consen 138 GGESQIYDNDKEILFFFTLLEPGDTLLVD--------DRRVWHYVTPIRP 179 (195)
T ss_dssp E--EEEEETTSSEEEEE---STTEEEEEE--------TTTEEEEE--EEE
T ss_pred CceEEEEeCCCCcceEEEecCCCCEEEEe--------CCcceECCCceec
Confidence 998875221 122334556666664 6689999999976
No 54
>PLN02997 flavonol synthase
Probab=66.22 E-value=34 Score=30.19 Aligned_cols=81 Identities=14% Similarity=0.041 Sum_probs=48.4
Q ss_pred ceEEEEeCCC------CcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC-ceEEecccccEEEEEe----cCC
Q psy6259 131 PLQINNYGLG------GHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL-NLTVFPEKGSAVFWYN----AHA 199 (227)
Q Consensus 131 ~~~v~rY~~G------~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~-~~~v~P~~G~al~f~~----~~~ 199 (227)
.+++.+|.+- -...+|.|... +|+++. |. .||-=+...- =+.|+|..|.+||--- .+.
T Consensus 184 ~lRl~~YP~~~~~~~~~g~~~HTD~g~--------lTlL~Q--d~-v~GLQV~~~g~Wi~V~p~pgalvVNiGD~Le~~T 252 (325)
T PLN02997 184 VLRVNFYPPTQDTELVIGAAAHSDMGA--------IALLIP--NE-VPGLQAFKDEQWLDLNYINSAVVVIIGDQLMRMT 252 (325)
T ss_pred eeeeecCCCCCCcccccCccCccCCCc--------eEEEec--CC-CCCEEEeECCcEEECCCCCCeEEEEechHHHHHh
Confidence 4788889763 12567887643 677643 32 3554444432 2679999998888321 112
Q ss_pred CCCCCCccccccCCCccCeEEEEE
Q psy6259 200 NTLLDYRMYHSGCPVALGNKWGKL 223 (227)
Q Consensus 200 ~g~~d~~~~H~g~pV~~G~K~i~~ 223 (227)
+|.. ..+.|++..-....||.+.
T Consensus 253 NG~~-kSt~HRVv~~~~~~R~Si~ 275 (325)
T PLN02997 253 NGRF-KNVLHRAKTDKERLRISWP 275 (325)
T ss_pred CCcc-ccccceeeCCCCCCEEEEE
Confidence 3322 3688999754455688764
No 55
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=65.95 E-value=59 Score=29.16 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=49.3
Q ss_pred ceEEEEeCCCC------cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCCc--eEEecccccEEEEEecCC---
Q psy6259 131 PLQINNYGLGG------HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLN--LTVFPEKGSAVFWYNAHA--- 199 (227)
Q Consensus 131 ~~~v~rY~~G~------~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~--~~v~P~~G~al~f~~~~~--- 199 (227)
.+++.+|.+-. ...+|.|.. .+|+|+. |. .||-=++...+ +.|+|..|.+|| |..+
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g--------~lTiL~Q--d~-v~GLQV~~~~~~Wi~V~p~pgalVV--NiGD~lq 277 (358)
T PLN02254 211 ALQLNSYPVCPDPDRAMGLAPHTDSS--------LLTILYQ--SN-TSGLQVFREGVGWVTVPPVPGSLVV--NVGDLLH 277 (358)
T ss_pred eEEEecCCCCCCcccccCcCCccCCC--------cEEEEec--CC-CCCceEECCCCEEEEcccCCCCEEE--EhHHHHH
Confidence 56788897621 256788764 3677754 32 35544455432 689999999998 4322
Q ss_pred ---CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 ---NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 ---~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+|.. ..+.|++..-....||.+..
T Consensus 278 ~~SNg~~-kS~~HRVv~~~~~~R~Sia~ 304 (358)
T PLN02254 278 ILSNGRF-PSVLHRAVVNKTRHRISVAY 304 (358)
T ss_pred HHhCCee-ccccceeecCCCCCEEEEEE
Confidence 2322 36899995444457776653
No 56
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=65.74 E-value=60 Score=29.09 Aligned_cols=83 Identities=13% Similarity=0.102 Sum_probs=48.4
Q ss_pred CceEEEEeCCC----C--cceeeeeCCCCCCCCceEEEEEEeecCC-CCCceeeeCCC-ceEEecccccEEEEEe----c
Q psy6259 130 GPLQINNYGLG----G--HYDLHCDATPRDEGLWRLASFMFYLTDV-ELGGATIFPSL-NLTVFPEKGSAVFWYN----A 197 (227)
Q Consensus 130 e~~~v~rY~~G----~--~y~~H~D~~~~~~~~~R~~T~liYLnd~-~~GGeT~Fp~~-~~~v~P~~G~al~f~~----~ 197 (227)
..+++.+|.+- . .-.+|.|.. .+|+| +.|. ..||-=+...- =+.|.|..|.+||--- .
T Consensus 211 ~~lR~~~YP~~~~~~~~~g~~~HtD~g--------~lTlL--~qd~~~v~GLQV~~~g~Wi~V~p~pgalVVNiGD~L~~ 280 (361)
T PLN02758 211 QAVRMNYYPPCSRPDLVLGLSPHSDGS--------ALTVL--QQGKGSCVGLQILKDNTWVPVHPVPNALVINIGDTLEV 280 (361)
T ss_pred ceeeeecCCCCCCcccccCccCccCCc--------eeEEE--EeCCCCCCCeeeeeCCEEEeCCCCCCeEEEEccchhhh
Confidence 35678888642 1 245777764 35666 4453 44564344331 2679999999888321 1
Q ss_pred CCCCCCCCccccccCCCccCeEEEEE
Q psy6259 198 HANTLLDYRMYHSGCPVALGNKWGKL 223 (227)
Q Consensus 198 ~~~g~~d~~~~H~g~pV~~G~K~i~~ 223 (227)
+.+|.. ..+.|++.......||.+.
T Consensus 281 ~SNG~~-kS~~HRVv~~~~~~R~Sia 305 (361)
T PLN02758 281 LTNGKY-KSVEHRAVTNKEKDRLSIV 305 (361)
T ss_pred hcCCee-ecccceeecCCCCCEEEEE
Confidence 122322 3689999755455788765
No 57
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=64.13 E-value=33 Score=30.71 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=48.4
Q ss_pred ceEEEEeCCC------CcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC---ceEEecccccEEEEEecCC--
Q psy6259 131 PLQINNYGLG------GHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL---NLTVFPEKGSAVFWYNAHA-- 199 (227)
Q Consensus 131 ~~~v~rY~~G------~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~---~~~v~P~~G~al~f~~~~~-- 199 (227)
.+++.+|.+- -...+|.|.. .+|+|+. |. .||-=+.... =+.|.|..|.+|| |..+
T Consensus 196 ~lrl~~YP~~~~~~~~~G~~~HTD~g--------~lTlL~Q--d~-v~GLQV~~~~~~~Wi~Vpp~pgalVV--NiGD~L 262 (358)
T PLN02515 196 KVVVNYYPKCPQPDLTLGLKRHTDPG--------TITLLLQ--DQ-VGGLQATRDGGKTWITVQPVEGAFVV--NLGDHG 262 (358)
T ss_pred eEEEeecCCCCChhhccCCCCCCCCC--------eEEEEec--CC-CCceEEEECCCCeEEECCCCCCeEEE--EccHHH
Confidence 4678888752 1255787764 3666643 32 3453333322 2679999998888 4332
Q ss_pred ----CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 ----NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 ----~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+|.. ..+.|++.....+.||.+..
T Consensus 263 ~~~TNG~~-kSt~HRVv~~~~~~R~Si~~ 290 (358)
T PLN02515 263 HYLSNGRF-KNADHQAVVNSNCSRLSIAT 290 (358)
T ss_pred HHHhCCee-eeecceEECCCCCCEEEEEE
Confidence 3333 36899986555567887754
No 58
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=63.17 E-value=52 Score=29.23 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=49.6
Q ss_pred CceEEEEeCCCC------cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeC-CCc--eEEecccccEEEEEecCC-
Q psy6259 130 GPLQINNYGLGG------HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFP-SLN--LTVFPEKGSAVFWYNAHA- 199 (227)
Q Consensus 130 e~~~v~rY~~G~------~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp-~~~--~~v~P~~G~al~f~~~~~- 199 (227)
..+++.+|.+-. ...+|.|.. .+|+| +.|. .||-=++. ..+ +.|.|..|.+|| |..+
T Consensus 193 ~~lR~~~YPp~~~~~~~~g~~~HtD~g--------~lTlL--~qd~-v~GLQV~~~~~g~Wi~V~p~pg~~vV--NiGD~ 259 (345)
T PLN02750 193 SFARFNHYPPCPAPHLALGVGRHKDGG--------ALTVL--AQDD-VGGLQISRRSDGEWIPVKPIPDAFII--NIGNC 259 (345)
T ss_pred eEEEEEecCCCCCcccccCcCCCCCCC--------eEEEE--ecCC-CCceEEeecCCCeEEEccCCCCeEEE--EhHHH
Confidence 457888997521 255788764 35665 3342 35544443 222 789999999888 4322
Q ss_pred -----CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 -----NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 -----~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+|.. ..++|++.......||.+..
T Consensus 260 L~~~Tng~~-~St~HRVv~~~~~~R~Si~~ 288 (345)
T PLN02750 260 MQVWTNDLY-WSAEHRVVVNSQKERFSIPF 288 (345)
T ss_pred HHHHhCCee-ecccceeccCCCCCEEEEEE
Confidence 2322 36899997555567887653
No 59
>PTZ00273 oxidase reductase; Provisional
Probab=58.46 E-value=65 Score=28.16 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=47.6
Q ss_pred CceEEEEeCCCC-------cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCCc--eEEecccccEEEEEe----
Q psy6259 130 GPLQINNYGLGG-------HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLN--LTVFPEKGSAVFWYN---- 196 (227)
Q Consensus 130 e~~~v~rY~~G~-------~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~--~~v~P~~G~al~f~~---- 196 (227)
..+++.+|.+.. .-.+|.|.. .+|+|. .|. .||-=++...+ +.|+|..|.+||---
T Consensus 177 ~~lrl~~YP~~~~~~~~~~g~~~HTD~g--------~lTlL~--qd~-~~GLqV~~~~g~Wi~V~p~pg~lvVNvGD~l~ 245 (320)
T PTZ00273 177 SVFRMKHYPALPQTKKGRTVCGEHTDYG--------IITLLY--QDS-VGGLQVRNLSGEWMDVPPLEGSFVVNIGDMME 245 (320)
T ss_pred ceeeeeecCCCCCccccCcccccccCCC--------eEEEEe--cCC-CCceEEECCCCCEEeCCCCCCeEEEEHHHHHH
Confidence 347888896521 134677763 366664 343 35644453222 789999999887321
Q ss_pred cCCCCCCCCccccccCCCccCeEEEEEe
Q psy6259 197 AHANTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 197 ~~~~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
.+.+|.. ..++|++... ...||.+..
T Consensus 246 ~~TnG~~-kSt~HRVv~~-~~~R~Si~~ 271 (320)
T PTZ00273 246 MWSNGRY-RSTPHRVVNT-GVERYSMPF 271 (320)
T ss_pred HHHCCee-eCCCccccCC-CCCeEEEEE
Confidence 1222322 2589999743 357887653
No 60
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.37 E-value=14 Score=30.19 Aligned_cols=56 Identities=27% Similarity=0.288 Sum_probs=33.0
Q ss_pred eeeeeCCCCCCCCceEEEEEEeecCC--CCCceeeeCCC-----ceEEecccccEEEEEecCCCCCCCCccccccCCCcc
Q psy6259 144 DLHCDATPRDEGLWRLASFMFYLTDV--ELGGATIFPSL-----NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVAL 216 (227)
Q Consensus 144 ~~H~D~~~~~~~~~R~~T~liYLnd~--~~GGeT~Fp~~-----~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~ 216 (227)
..|.|+.. -++|++=|- -.||||..... .+.---..|.+++- -|.+.+|.+||+..
T Consensus 139 G~HqDG~D---------~I~I~~vDR~NI~gGet~lY~~~~~~p~f~kvl~pGe~~~l--------~Dh~~~H~~tpi~p 201 (226)
T COG4340 139 GAHQDGVD---------WIIIMLVDRQNIDGGETDLYAPDGASPGFFKVLAPGEAVFL--------DDHRVLHGVTPIVP 201 (226)
T ss_pred cccccCcc---------EEEEEEeeeccccCceEEEEccCCCCcceEEeccCCcEEEe--------ccchhcccccceec
Confidence 46676654 245556663 36999986431 12222234444443 26689999999875
No 61
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=53.96 E-value=22 Score=25.00 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=32.0
Q ss_pred EEEeecCCCCCceeeeCC--CceEEecccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 162 FMFYLTDVELGGATIFPS--LNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 162 ~liYLnd~~~GGeT~Fp~--~~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
.+.-++|...|+...|.. ..+.|.-..|.+..|.| ...|.++|+..|
T Consensus 3 ~v~~~~~l~~g~~~~~~~~g~~~~v~r~~~~~~a~~~---------~CpH~g~~L~~g 51 (98)
T cd03528 3 RVCAVDELPEGEPKRVDVGGRPIAVYRVDGEFYATDD---------LCTHGDASLSEG 51 (98)
T ss_pred EEEEhhhcCCCCEEEEEECCeEEEEEEECCEEEEECC---------cCCCCCCCCCCC
Confidence 455567776676665532 34555555677777777 699999999766
No 62
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=52.81 E-value=70 Score=27.94 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=46.1
Q ss_pred ceEEEEeCCC----Cc--ceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC-ceEEecccc-cEEEEEec-----
Q psy6259 131 PLQINNYGLG----GH--YDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL-NLTVFPEKG-SAVFWYNA----- 197 (227)
Q Consensus 131 ~~~v~rY~~G----~~--y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~-~~~v~P~~G-~al~f~~~----- 197 (227)
.+++.+|.+- .. ..+|.|... +|+| +.|...||-=+.... =+.|.|..| ..|| |.
T Consensus 154 ~lrl~~YP~~~~~~~~~G~~~HtD~g~--------lTlL--~q~~~v~GLqV~~~g~Wi~V~p~p~~~lvV--NvGD~L~ 221 (303)
T PLN02403 154 GTKVAKYPECPRPELVRGLREHTDAGG--------IILL--LQDDQVPGLEFLKDGKWVPIPPSKNNTIFV--NTGDQLE 221 (303)
T ss_pred eeeeEcCCCCCCcccccCccCccCCCe--------EEEE--EecCCCCceEeccCCeEEECCCCCCCEEEE--EehHHHH
Confidence 3789999652 11 457887642 4554 444333443232221 267899985 5555 32
Q ss_pred -CCCCCCCCccccccCCCccCeEEEEEe
Q psy6259 198 -HANTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 198 -~~~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+.+|.. ..+.|++.....+.||.+..
T Consensus 222 ~~Tng~~-~S~~HRVv~~~~~~R~Si~~ 248 (303)
T PLN02403 222 VLSNGRY-KSTLHRVMADKNGSRLSIAT 248 (303)
T ss_pred HHhCCee-ecccceeecCCCCCEEEEEE
Confidence 223332 36889998766778887753
No 63
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=52.64 E-value=64 Score=28.87 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=47.6
Q ss_pred ceEEEEeCCC----C--cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC-ceEEecccccEEEEEecCC----
Q psy6259 131 PLQINNYGLG----G--HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL-NLTVFPEKGSAVFWYNAHA---- 199 (227)
Q Consensus 131 ~~~v~rY~~G----~--~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~-~~~v~P~~G~al~f~~~~~---- 199 (227)
.+++.+|.+- . ...+|.|... +|+|+ .|. .||-=+.... =+.|.|..|.+|| |..+
T Consensus 212 ~lrl~~YP~~~~~~~~~g~~~HTD~g~--------lTlL~--qd~-v~GLQV~~~g~Wi~V~p~pg~lvV--NiGD~L~~ 278 (360)
T PLN03178 212 QMKINYYPRCPQPDLALGVEAHTDVSA--------LTFIL--HNM-VPGLQVLYEGKWVTAKCVPDSIVV--HIGDTLEI 278 (360)
T ss_pred hhheeccCCCCCCccccCcCCccCCCc--------eEEEe--eCC-CCceeEeECCEEEEcCCCCCeEEE--EccHHHHH
Confidence 4678888652 1 2457888743 67774 332 3453333322 2689999998887 4332
Q ss_pred --CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 --NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 --~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+|+. ..+.|++..--...||.+..
T Consensus 279 ~TNG~~-kSt~HRVv~~~~~~R~Si~~ 304 (360)
T PLN03178 279 LSNGRY-KSILHRGLVNKEKVRISWAV 304 (360)
T ss_pred HhCCcc-ccccceeecCCCCCeEEEEE
Confidence 2322 36899975333457887653
No 64
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=52.40 E-value=76 Score=28.05 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=54.7
Q ss_pred cCCceEEEEeCC------CCcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC--ceEEecccccEEEEEec--
Q psy6259 128 YKGPLQINNYGL------GGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL--NLTVFPEKGSAVFWYNA-- 197 (227)
Q Consensus 128 ~~e~~~v~rY~~------G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~--~~~v~P~~G~al~f~~~-- 197 (227)
.++-++++||.. ++.-..|.|+.. +|++ +.|.. ||-=+.+.. =+.|.|..|..||..--
T Consensus 172 ~~~~~RLlrYP~~~~~~~~~~~GaHtD~G~--------lTLl--~Qd~~-~GLqv~~~~g~Wl~v~P~pgtlvVNiGdmL 240 (322)
T COG3491 172 PNSVLRLLRYPSRPAREGADGVGAHTDYGL--------LTLL--FQDDV-GGLEVRPPNGGWLDVPPIPGTLVVNIGDML 240 (322)
T ss_pred chheEEEEecCCCcccccccccccccCCCe--------EEEE--Eeccc-CCeEEecCCCCeeECCCCCCeEEEeHHHHH
Confidence 567789999983 344578888743 3333 55554 665565543 37899999999996531
Q ss_pred --CCCCCCCCccccccCCCccCeEEEEE
Q psy6259 198 --HANTLLDYRMYHSGCPVALGNKWGKL 223 (227)
Q Consensus 198 --~~~g~~d~~~~H~g~pV~~G~K~i~~ 223 (227)
+.+|.. ..|.|+++--..=+||.+-
T Consensus 241 e~~Tng~l-rST~HRV~~~~~~~R~Sip 267 (322)
T COG3491 241 ERWTNGRL-RSTVHRVRNPPGVDRYSIP 267 (322)
T ss_pred HHHhCCee-ccccceeecCCCccceeee
Confidence 223333 3689999877644777653
No 65
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=52.35 E-value=26 Score=24.72 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=29.9
Q ss_pred EEeecCCCCCceeeeCCC--ceE-EecccccEEEEEecCCCCCCCCccccccCCCccCe
Q psy6259 163 MFYLTDVELGGATIFPSL--NLT-VFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGN 218 (227)
Q Consensus 163 liYLnd~~~GGeT~Fp~~--~~~-v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~ 218 (227)
+.-++|..+|+...|... .+. ++...|....|.| ...|.++|+..|.
T Consensus 4 v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~---------~CpH~g~~L~~g~ 53 (98)
T cd03530 4 IGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALEN---------RCPHKGGPLSEGI 53 (98)
T ss_pred EEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcC---------cCCCCCCCccCCE
Confidence 445666667766655432 333 3334477777776 6999999998763
No 66
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=51.77 E-value=89 Score=27.98 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=48.1
Q ss_pred ceEEEEeCCC------CcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC-ceEEecccccEEEEEecCC----
Q psy6259 131 PLQINNYGLG------GHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL-NLTVFPEKGSAVFWYNAHA---- 199 (227)
Q Consensus 131 ~~~v~rY~~G------~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~-~~~v~P~~G~al~f~~~~~---- 199 (227)
.+++.+|.+- -.-.+|.|... +|+| +.+...||-=+.... =+.|.|..|.+|| |..+
T Consensus 214 ~lRl~~YP~~p~~~~~~g~~~HtD~g~--------lTlL--~q~~~v~GLQV~~~g~W~~V~p~pgalVV--NiGD~l~~ 281 (362)
T PLN02393 214 CLRVNYYPKCPQPDLTLGLSPHSDPGG--------MTIL--LPDDNVAGLQVRRDDAWITVKPVPDAFIV--NIGDQIQV 281 (362)
T ss_pred eeeeeecCCCCCcccccccccccCCce--------EEEE--eeCCCCCcceeeECCEEEECCCCCCeEEE--EcchhhHh
Confidence 5777888642 12557877642 4555 334334554444332 2689999999888 4332
Q ss_pred --CCCCCCccccccCCCccCeEEEEEec
Q psy6259 200 --NTLLDYRMYHSGCPVALGNKWGKLLL 225 (227)
Q Consensus 200 --~g~~d~~~~H~g~pV~~G~K~i~~~W 225 (227)
+|.. ..++|++..-....||.+...
T Consensus 282 ~Tng~~-kSt~HRVv~~~~~~R~SiafF 308 (362)
T PLN02393 282 LSNAIY-KSVEHRVIVNSAKERVSLAFF 308 (362)
T ss_pred hcCCee-eccceecccCCCCCEEEEEEE
Confidence 2222 368899964444578877643
No 67
>PLN02704 flavonol synthase
Probab=50.90 E-value=52 Score=29.07 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=46.9
Q ss_pred ceEEEEeCCC----C--cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCCc-eEEecccccEEEEEecCC----
Q psy6259 131 PLQINNYGLG----G--HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLN-LTVFPEKGSAVFWYNAHA---- 199 (227)
Q Consensus 131 ~~~v~rY~~G----~--~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~-~~v~P~~G~al~f~~~~~---- 199 (227)
.+++.+|.+- . ...+|.|... +|+|+. |. .||-=+....+ +.|+|..|.+|| |..+
T Consensus 200 ~lrl~~YP~~~~~~~~~g~~~HtD~g~--------lTlL~q--d~-v~GLQV~~~g~Wi~V~p~pg~lvV--NvGD~L~~ 266 (335)
T PLN02704 200 LLKINYYPPCPRPDLALGVVAHTDMSA--------ITILVP--NE-VQGLQVFRDDHWFDVKYIPNALVI--HIGDQIEI 266 (335)
T ss_pred hhhhhcCCCCCCcccccCccCccCCcc--------eEEEec--CC-CCceeEeECCEEEeCCCCCCeEEE--EechHHHH
Confidence 3667788752 1 2457887643 566644 33 44533343322 679999998888 3322
Q ss_pred --CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 --NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 --~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
+|.. ..+.|++...-...||.+..
T Consensus 267 ~TNg~~-kSt~HRVv~~~~~~R~Si~~ 292 (335)
T PLN02704 267 LSNGKY-KSVLHRTTVNKEKTRMSWPV 292 (335)
T ss_pred HhCCee-ecccceeecCCCCCeEEEEE
Confidence 2222 36899997544557887653
No 68
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=50.56 E-value=11 Score=32.26 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=25.0
Q ss_pred eeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCC
Q psy6259 144 DLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPS 179 (227)
Q Consensus 144 ~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 179 (227)
.||.|..... ..-..+++.-+.-+.+||+|.|=+
T Consensus 95 ~wHtD~sy~~--~pp~~~~L~~~~~p~~GG~T~fad 128 (277)
T PRK09553 95 NWHTDVTFIE--TPPLGAILAAKQLPSTGGDTLWAS 128 (277)
T ss_pred CCeecccCee--CCCceeEEEEEecCCCCCccHhhh
Confidence 4999998764 223466776677778999999965
No 69
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=49.80 E-value=27 Score=26.56 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=38.5
Q ss_pred ceEEEEEEeecCCCCCceeeeCCC--ceEE-ecccccEEEEEecCCCCCCCCccccccCCCccCe
Q psy6259 157 WRLASFMFYLTDVELGGATIFPSL--NLTV-FPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGN 218 (227)
Q Consensus 157 ~R~~T~liYLnd~~~GGeT~Fp~~--~~~v-~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~ 218 (227)
.+.+..++.++|..+|+-..|.-. .+.| +-..|.+-.|.| ...|.+.|+..|.
T Consensus 15 ~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n---------~CpHrga~L~~G~ 70 (134)
T cd04338 15 REEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLED---------RCPHRLAKLSEGQ 70 (134)
T ss_pred ccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcC---------cCCCCcCcccCCe
Confidence 456788899999988886655433 3433 345677878777 6999999998874
No 70
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=49.08 E-value=28 Score=25.02 Aligned_cols=47 Identities=28% Similarity=0.244 Sum_probs=31.6
Q ss_pred EEeecCCCCCceeeeCCC---ceEEecccccEEEEEecCCCCCCCCccccccCCCccCe
Q psy6259 163 MFYLTDVELGGATIFPSL---NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGN 218 (227)
Q Consensus 163 liYLnd~~~GGeT~Fp~~---~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~ 218 (227)
+.-++|..+|+...|... .+-++...|.+..|.| ...|.++|+..|.
T Consensus 4 v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n---------~CpH~g~~L~~g~ 53 (108)
T cd03474 4 VCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQG---------ICPHQEIPLAEGG 53 (108)
T ss_pred eeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcC---------cCCCCCCCcccCc
Confidence 445667666665555431 2346667788777777 6999999988763
No 71
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=48.23 E-value=2e+02 Score=25.53 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=49.7
Q ss_pred CceEEEEeCCCC--------cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC--ceEEecccccEEEEEecCC
Q psy6259 130 GPLQINNYGLGG--------HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL--NLTVFPEKGSAVFWYNAHA 199 (227)
Q Consensus 130 e~~~v~rY~~G~--------~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~--~~~v~P~~G~al~f~~~~~ 199 (227)
..+++.+|.+-. .-.+|.|.. .+|+|+. |. .||-=+.... =+.|.|..|.+|| |..+
T Consensus 178 ~~lRl~~YP~~~~~~~~~~~g~~~HTD~g--------~lTlL~Q--d~-v~GLQV~~~~g~Wi~Vpp~pga~VV--NiGD 244 (335)
T PLN02156 178 SCLRMNHYPEKEETPEKVEIGFGEHTDPQ--------LISLLRS--ND-TAGLQICVKDGTWVDVPPDHSSFFV--LVGD 244 (335)
T ss_pred ceEeEEeCCCCCCCccccccCCCCccCCC--------ceEEEEe--CC-CCceEEEeCCCCEEEccCCCCcEEE--EhHH
Confidence 358889996521 134688764 3666644 42 3554344222 2689999999988 3322
Q ss_pred ------CCCCCCccccccCCCccCeEEEEEe
Q psy6259 200 ------NTLLDYRMYHSGCPVALGNKWGKLL 224 (227)
Q Consensus 200 ------~g~~d~~~~H~g~pV~~G~K~i~~~ 224 (227)
||.. ..+.|++......+||.+..
T Consensus 245 ~l~~wTNg~~-kSt~HRVv~~~~~~R~Siaf 274 (335)
T PLN02156 245 TLQVMTNGRF-KSVKHRVVTNTKRSRISMIY 274 (335)
T ss_pred HHHHHhCCee-eccceeeecCCCCCEEEEEE
Confidence 2322 36899998666667887754
No 72
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=45.62 E-value=37 Score=25.63 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=39.1
Q ss_pred ceEEEEEEeecCCCCCceeeeCCC--ce-EEecccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 157 WRLASFMFYLTDVELGGATIFPSL--NL-TVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 157 ~R~~T~liYLnd~~~GGeT~Fp~~--~~-~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
.+.+..+..+++..+|.-+.|.-. .+ -++...|++-.|.| ...|.|+|+..|
T Consensus 15 ~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n---------~CpH~g~~L~~G 69 (129)
T cd04337 15 RNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRD---------ECAHRACPLSLG 69 (129)
T ss_pred hCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeC---------cCCCCcCCcccC
Confidence 356778888899888877766543 23 34566788888887 699999999887
No 73
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=45.51 E-value=34 Score=23.86 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=32.9
Q ss_pred EEEEeecCCCCCceee---eCCCceEEecccccEEEEEecCCCCCCCCccccccCCCccCe
Q psy6259 161 SFMFYLTDVELGGATI---FPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGN 218 (227)
Q Consensus 161 T~liYLnd~~~GGeT~---Fp~~~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~ 218 (227)
..+.-++++.++|... .....+.++-..|....|.| ...|.++|+..|.
T Consensus 3 ~~v~~~~el~~~~~~~~~~~~~~~v~~~~~~g~~~A~~~---------~CpH~g~~l~~~~ 54 (97)
T PF00355_consen 3 VPVCRSSELPEPGDVKRVDVGGKLVLVRRSDGEIYAFSN---------RCPHQGCPLSEGP 54 (97)
T ss_dssp EEEEEGGGSHSTTEEEEEEETTEEEEEEETTTEEEEEES---------B-TTTSBBGGCSS
T ss_pred EEeeEHHHCCCCCCEEEEEcCCcEEEEEeCCCCEEEEEc---------cCCccceeEccee
Confidence 4455666766633332 22234667788888999988 6999999998884
No 74
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=44.63 E-value=1e+02 Score=24.13 Aligned_cols=78 Identities=17% Similarity=0.068 Sum_probs=43.3
Q ss_pred CCceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCCceEEecccccEEEEEecCCCCCCCCccc
Q psy6259 129 KGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMY 208 (227)
Q Consensus 129 ~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~v~P~~G~al~f~~~~~~g~~d~~~~ 208 (227)
.....+.+-.+|....+|+|.... + +++-+=|..+ .+|.... ..+..+.=+.|.+++|.+ ...
T Consensus 79 ~~~~~~s~l~pg~~I~pH~d~~~~-----~-lR~Hl~L~~p-~~~~~~~-v~~~~~~w~~G~~~~fD~---------s~~ 141 (163)
T PF05118_consen 79 LGRVRFSRLPPGTHIKPHRDPTNL-----R-LRLHLPLIVP-NPGCYIR-VGGETRHWREGECWVFDD---------SFE 141 (163)
T ss_dssp CEEEEEEEEECTEEEEEE-SS-TT-----E-EEEEEEEC---STTEEEE-ETTEEEB--CTEEEEE-T---------TS-
T ss_pred hhhEEEEEECCCCEECCeeCCCCc-----c-eEEEEEEEcC-CCCeEEE-ECCeEEEeccCcEEEEeC---------CEE
Confidence 345677888999999999997543 2 5555555544 2222221 224456668899999987 467
Q ss_pred cccCCCccCeEEEEE
Q psy6259 209 HSGCPVALGNKWGKL 223 (227)
Q Consensus 209 H~g~pV~~G~K~i~~ 223 (227)
|++----...|.++.
T Consensus 142 H~~~N~~~~~Rv~L~ 156 (163)
T PF05118_consen 142 HEVWNNGDEDRVVLI 156 (163)
T ss_dssp EEEEESSSS-EEEEE
T ss_pred EEEEeCCCCCEEEEE
Confidence 776554455666543
No 75
>KOG1971|consensus
Probab=43.65 E-value=18 Score=32.94 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=41.9
Q ss_pred CceEEEEEEeecCCCCCceeeeCCCc--eEEec-----------ccccEEEEEecCCCCCCCCccccccCCCccCeEEEE
Q psy6259 156 LWRLASFMFYLTDVELGGATIFPSLN--LTVFP-----------EKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGK 222 (227)
Q Consensus 156 ~~R~~T~liYLnd~~~GGeT~Fp~~~--~~v~P-----------~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~ 222 (227)
..|..|+.+||++..+||+..|-... -...+ ..|.+++.++ ++.|...+-+.|.-+.-
T Consensus 280 ~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~~~~~EiFdn~h~p~qa~LHrg---------~~~~~a~~~~~~~~~~n 350 (415)
T KOG1971|consen 280 DAREVGLFVCLSNQFEGGELLFTGKYCTKHLRTDDLWEIFDNSHDPGQAYLHRG---------YHKHGARATIVGQPCPN 350 (415)
T ss_pred chhhcceeEEecccccCCeeEeeccccccccCCCchhhhccCcCCCccceecCc---------chhccccccCCCCCCCc
Confidence 57899999999999999999997631 11122 2355555555 45666666566666666
Q ss_pred EecC
Q psy6259 223 LLLS 226 (227)
Q Consensus 223 ~~W~ 226 (227)
..|+
T Consensus 351 v~~~ 354 (415)
T KOG1971|consen 351 VYWF 354 (415)
T ss_pred eeee
Confidence 6665
No 76
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=42.24 E-value=33 Score=30.65 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=29.8
Q ss_pred ceEEecccccEEEEEecCCCCCCCCccccccCCCccCeEEEEEec
Q psy6259 181 NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLL 225 (227)
Q Consensus 181 ~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~~W 225 (227)
.+.++-+.|++++|.|. +++|+-..-. |.|+..-.+
T Consensus 312 ~~~~~l~pGd~vi~DN~--------rvLHgRtaf~-g~R~L~G~Y 347 (362)
T TIGR02410 312 EIEFKLRPGTVLIFDNW--------RVLHSRTSFT-GYRRMCGCY 347 (362)
T ss_pred EEEEEcCCccEEEEeeE--------EEeecCCCcC-CceEEEEEE
Confidence 46889999999999996 7999999875 778766544
No 77
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=39.47 E-value=48 Score=25.30 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=37.8
Q ss_pred ceEEEEEEeecCCCCCceeeeCCC--ceEEe-cc-cccEEEEEecCCCCCCCCccccccCCCccCe
Q psy6259 157 WRLASFMFYLTDVELGGATIFPSL--NLTVF-PE-KGSAVFWYNAHANTLLDYRMYHSGCPVALGN 218 (227)
Q Consensus 157 ~R~~T~liYLnd~~~GGeT~Fp~~--~~~v~-P~-~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~ 218 (227)
.+.+..+..++++.+|+-+.|.-. .+.|. -+ .|.+-.|.| ...|.+.|+..|.
T Consensus 15 ~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n---------~CpHrga~L~~G~ 71 (138)
T cd03480 15 REVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDD---------QCPHRLAPLSEGR 71 (138)
T ss_pred ccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcC---------CCcCCcCccccce
Confidence 456778888999888776655433 33333 23 678888877 6999999999884
No 78
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=38.17 E-value=42 Score=30.00 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=29.5
Q ss_pred ceEEecccccEEEEEecCCCCCCCCccccccCCCc--cCeEEEEEec
Q psy6259 181 NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVA--LGNKWGKLLL 225 (227)
Q Consensus 181 ~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~--~G~K~i~~~W 225 (227)
.+..+=++|++|+|.|. +++|+...-. .|.|+..-.+
T Consensus 313 ~~~~~l~pGd~vi~DN~--------rvlH~R~af~~~~~~R~L~g~Y 351 (366)
T TIGR02409 313 KFTFKLEPGDLVLFDNT--------RLLHARDAFSNPEGKRHLQGCY 351 (366)
T ss_pred EEEEEcCCCcEEEEece--------EEeecCCCcCCCCCceEEEEEE
Confidence 46788899999999996 7999998875 5777765443
No 79
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=37.58 E-value=37 Score=25.27 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=32.9
Q ss_pred EEEEEeecCCCCCceeeeCC---Cce-EEecccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 160 ASFMFYLTDVELGGATIFPS---LNL-TVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 160 ~T~liYLnd~~~GGeT~Fp~---~~~-~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
+..+.-++|..++|...+-. ..+ -++-..|..-.|.| ...|++.|+..|
T Consensus 3 w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n---------~CpHrg~~L~~g 55 (123)
T cd03535 3 WVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFN---------SCRHRGMQVCRA 55 (123)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcc---------cCccCCCEeecc
Confidence 45566778887766554431 123 34456788888877 699999999875
No 80
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=36.71 E-value=45 Score=28.56 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=23.3
Q ss_pred ceEEecccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 181 NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 181 ~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
.++.+=+.|++|+|.|. +++|++..-..+
T Consensus 233 ~~~~~w~~GD~viwDNr--------~~~H~a~~~~~~ 261 (277)
T PRK09553 233 QVRWRWQPNDVAIWDNR--------VTQHYANADYLP 261 (277)
T ss_pred EEEEecCCCCEEEEcCc--------ceeEecccCCCC
Confidence 57889999999999996 788988754433
No 81
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=35.96 E-value=49 Score=24.78 Aligned_cols=48 Identities=8% Similarity=0.056 Sum_probs=32.5
Q ss_pred EEEEeecCCCCCceee-e--CCCce-EEecccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 161 SFMFYLTDVELGGATI-F--PSLNL-TVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 161 T~liYLnd~~~GGeT~-F--p~~~~-~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
..+.-+++..++|... + ....+ -++...|.+-.|.| ...|++.++..|
T Consensus 2 ~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n---------~C~Hrg~~L~~g 53 (123)
T cd03542 2 VYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFIN---------ACSHRGAMLCRR 53 (123)
T ss_pred EEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcc---------cCcCCCCccccc
Confidence 3456677877766533 2 22233 45567888988888 599999999765
No 82
>PHA02577 2 DNA end protector protein; Provisional
Probab=35.83 E-value=9.2 Score=30.54 Aligned_cols=65 Identities=23% Similarity=0.377 Sum_probs=46.3
Q ss_pred eEEEEeCCCCcceeeeeCCCCCC-CCceEEEEEEeecCCCCCceeeeCCCceEEecccccEEEEEe
Q psy6259 132 LQINNYGLGGHYDLHCDATPRDE-GLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYN 196 (227)
Q Consensus 132 ~~v~rY~~G~~y~~H~D~~~~~~-~~~R~~T~liYLnd~~~GGeT~Fp~~~~~v~P~~G~al~f~~ 196 (227)
-|++++.+|--|.--||+-..+. .--=..-+++|||.....|.|.|..+++-.-|.+-+.+|+..
T Consensus 35 h~v~kp~~Grly~F~YdAk~KdtLpywDrfPLI~flg~~~~~g~~l~~GLNLHYlpPKaR~~fle~ 100 (181)
T PHA02577 35 HQVVKPQPGRLYTFEYDAKHKDTLPYWDRFPLIIFLGSGQSKAHTLMYGLNLHYLPPKARQLFLEE 100 (181)
T ss_pred cccccCcCceEEEEEecccccCcccccccCcEEEEEecCCCCCcceEeeeecccCCHHHHHHHHHH
Confidence 56678888887777777765432 111235689999999888999999988876666666666654
No 83
>COG5448 Uncharacterized conserved protein [Function unknown]
Probab=35.81 E-value=1.3e+02 Score=23.92 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=27.5
Q ss_pred cCCceEEEE-eC-CCCcceeeeeCCCCCCCCceEEEEEEeecCCCC
Q psy6259 128 YKGPLQINN-YG-LGGHYDLHCDATPRDEGLWRLASFMFYLTDVEL 171 (227)
Q Consensus 128 ~~e~~~v~r-Y~-~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~ 171 (227)
....+|+.+ |+ +|+.|..-.+...+. |+++|.|.|..
T Consensus 81 v~~~FQLrK~Yg~~g~sy~R~ItkPV~g-------SV~v~V~gVk~ 119 (184)
T COG5448 81 VLNKFQLRKTYGNPGESYERVITKPVNG-------SVMVYVNGVKT 119 (184)
T ss_pred ceeeEEEEeeecCCCCccceeeccccCC-------eEEEEEccEEc
Confidence 455688877 86 567888877776653 89999998763
No 84
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=34.04 E-value=76 Score=23.08 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=30.0
Q ss_pred EEEEEeecCCCCCceeeeCCCceEEecccccEEEEEecCCC-CCCCCccccccCCCccC
Q psy6259 160 ASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN-TLLDYRMYHSGCPVALG 217 (227)
Q Consensus 160 ~T~liYLnd~~~GGeT~Fp~~~~~v~P~~G~al~f~~~~~~-g~~d~~~~H~g~pV~~G 217 (227)
++.++=++|..+|+...|+. ..|..++|.+.... -..+....|.++|..+|
T Consensus 5 w~~~c~~~dl~~~~~~~v~~-------~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g 56 (106)
T COG2146 5 WIRICKVDDLPEGGGVRVLV-------GGGRFALVVRADGEVFAIDNRCPHAGAPLSRG 56 (106)
T ss_pred eEEEEehHhcCCCCceEEEe-------cCCEEEEEEecCCEEEEEeCcCCCCCCccccc
Confidence 45556678888888777764 23344444442110 01233799999996555
No 85
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=33.75 E-value=78 Score=22.05 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=26.2
Q ss_pred ecCCCCCceeeeCC--CceEEecccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 166 LTDVELGGATIFPS--LNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 166 Lnd~~~GGeT~Fp~--~~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
++|..+|+-..|.. ..+.|.-..|.+..+.| ...|.++|+..|
T Consensus 6 ~~~l~~g~~~~~~~~~~~v~v~r~~g~~~A~~~---------~CpH~g~~L~~g 50 (95)
T cd03478 6 LSDLGDGEMKEVDVGDGKVLLVRQGGEVHAIGA---------KCPHYGAPLAKG 50 (95)
T ss_pred hhhCCCCCEEEEEeCCcEEEEEEECCEEEEEcC---------cCcCCCCccCCC
Confidence 44555555444432 23334334677666666 699999998765
No 86
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=32.99 E-value=80 Score=23.15 Aligned_cols=47 Identities=15% Similarity=0.088 Sum_probs=30.9
Q ss_pred EEEeecCCCCCceeeeCC--CceE-EecccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 162 FMFYLTDVELGGATIFPS--LNLT-VFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 162 ~liYLnd~~~GGeT~Fp~--~~~~-v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
.+..++|..+|+-..|.- ..+. ++-..|.+..+.| ...|.++++..|
T Consensus 4 ~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n---------~CpH~ga~L~~G 53 (115)
T cd03531 4 CLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDA---------YCRHMGGDLSQG 53 (115)
T ss_pred EEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcC---------cCCCCCCCCccC
Confidence 445566766666555543 2333 3345777888777 699999999886
No 87
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=32.56 E-value=44 Score=25.16 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=36.1
Q ss_pred eEEEEEEeecCCCCCceee---eCCCce-EEecccccEEEEEecCCCCCCCCccccccCCCccCe
Q psy6259 158 RLASFMFYLTDVELGGATI---FPSLNL-TVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGN 218 (227)
Q Consensus 158 R~~T~liYLnd~~~GGeT~---Fp~~~~-~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~ 218 (227)
+.+..+..++++.++|... +-...+ -++...|.+-.|.| ...|+++++..|.
T Consensus 7 ~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n---------~C~Hrg~~L~~g~ 62 (128)
T cd03472 7 RSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLN---------QCRHRGMRICRSD 62 (128)
T ss_pred CCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhh---------hCcCCCCeeeccC
Confidence 4466778888887766532 233333 45667888888888 5999999997753
No 88
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=31.98 E-value=91 Score=22.17 Aligned_cols=46 Identities=11% Similarity=0.027 Sum_probs=29.6
Q ss_pred EEeecCCCCCceeeeCC--CceEEec-ccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 163 MFYLTDVELGGATIFPS--LNLTVFP-EKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 163 liYLnd~~~GGeT~Fp~--~~~~v~P-~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
+.-++|..+|+...|.- ..+.|.- ..|....+.+ ...|.++|+..|
T Consensus 5 v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~---------~CpH~g~~L~~G 53 (101)
T TIGR02377 5 ACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDG---------LCTHEYAHLADG 53 (101)
T ss_pred EEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcC---------cCCCCCCCCCCC
Confidence 44567777776555532 2344433 3677666666 699999998876
No 89
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=31.19 E-value=90 Score=23.61 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=37.6
Q ss_pred CceEEEEEEeecCCCCCceeeeCCC--ceEEecccccEEEEEecCCCCCCCCccccccCCCccCe
Q psy6259 156 LWRLASFMFYLTDVELGGATIFPSL--NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGN 218 (227)
Q Consensus 156 ~~R~~T~liYLnd~~~GGeT~Fp~~--~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~ 218 (227)
-.+.+..+.-++++.+|.-..|.-. .+.|.-..|.+-.|.| .+.|++.|+..|.
T Consensus 11 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r~~g~v~A~~n---------~CpHrg~~L~~g~ 66 (136)
T cd03548 11 FRNHWYPALFSHELEEGEPKGIQLCGEPILLRRVDGKVYALKD---------RCLHRGVPLSKKP 66 (136)
T ss_pred cccCcEEEEEHHHCCCCCeEEEEECCcEEEEEecCCEEEEEeC---------cCcCCCCccccCc
Confidence 3456777788888877655545422 3444447888888888 6999999998764
No 90
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=31.16 E-value=26 Score=32.17 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=18.3
Q ss_pred eEEe-cccccEEEEEecCCCCCCCCccccccCCCccCeEEEEEec
Q psy6259 182 LTVF-PEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLL 225 (227)
Q Consensus 182 ~~v~-P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~~W 225 (227)
+.|. -++|+.|+|.+ .+.|++.++..|..+.-+..
T Consensus 319 v~iP~v~PGD~V~WHc---------D~iH~Vd~~h~g~~~ssV~Y 354 (416)
T PF07350_consen 319 VSIPDVEPGDYVFWHC---------DLIHAVDPEHNGKGDSSVMY 354 (416)
T ss_dssp EE---B-TT-EEEEET---------T--EEE--BSS-SS---EEE
T ss_pred ccCCCCCCCCeEEEeC---------CccccccccCCCCCCCCeeE
Confidence 3444 57899999998 69999999999987765543
No 91
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=31.11 E-value=52 Score=27.06 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=23.7
Q ss_pred cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCC
Q psy6259 142 HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPS 179 (227)
Q Consensus 142 ~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 179 (227)
...+|.|..... ..--+.++.-+.-..+||+|.|-+
T Consensus 96 ~l~~HtD~~~~~--~~p~~~~L~c~~~~~~GG~T~~~d 131 (258)
T PF02668_consen 96 ELPWHTDGSYWP--YPPDYLALYCLRPAEEGGETTFAD 131 (258)
T ss_dssp GEEEE-TTTTST--TEESEEEEEEEEEESSSSEEEEEE
T ss_pred ccccccccCccc--CCcceeEEEeeccCCCCCcccccc
Confidence 488999998653 222345555555667899999976
No 92
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=30.92 E-value=55 Score=27.47 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=26.9
Q ss_pred CcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCC
Q psy6259 141 GHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPS 179 (227)
Q Consensus 141 ~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 179 (227)
....+|.|..... ..--+++|.-|....+||+|.|-+
T Consensus 94 ~~l~~HtD~~y~~--~pp~~~~L~cl~~~~~GG~T~~vd 130 (262)
T cd00250 94 TLLPLHTDLAYHE--YRPGLQILHCLRNTATGGATLLVD 130 (262)
T ss_pred CCcCccccCCCCC--CCCceEEEEEeccCCCCCcceeee
Confidence 5567999997653 223456666777778899999976
No 93
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=30.60 E-value=42 Score=29.97 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=25.8
Q ss_pred cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCC
Q psy6259 142 HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPS 179 (227)
Q Consensus 142 ~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 179 (227)
...||.|..... ..-.+++|.-+.-..+||+|.|-+
T Consensus 186 ~l~~HtD~~y~~--~pP~~~~L~c~~~~~~GG~T~~~d 221 (366)
T TIGR02409 186 GLPFHTDNPYRD--HPPGLQLLHCLESTVEGGDSLFVD 221 (366)
T ss_pred cccccccCCccC--CCCceeeeeecccCCCCcceeeee
Confidence 456999986543 222356777777778999999977
No 94
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=29.41 E-value=94 Score=23.80 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=35.5
Q ss_pred eEEEEEEeecCCCC-CceeeeCC--CceEE-ecccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 158 RLASFMFYLTDVEL-GGATIFPS--LNLTV-FPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 158 R~~T~liYLnd~~~-GGeT~Fp~--~~~~v-~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
+.+..+..+++..+ |..+.|.. ..+.| +-..|++..|.| .+.|+|+++..|
T Consensus 20 ~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n---------~CpHrG~~L~~G 74 (144)
T cd03479 20 RYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDE---------HCPHRGASLVFG 74 (144)
T ss_pred CceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcC---------cCCCCCCcccCC
Confidence 34667778888874 54454432 23443 457888888888 699999999876
No 95
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=28.02 E-value=91 Score=21.91 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=26.6
Q ss_pred ecCCCCCceeeeC--CCceE-EecccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 166 LTDVELGGATIFP--SLNLT-VFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 166 Lnd~~~GGeT~Fp--~~~~~-v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
++|...|+...|. ...+. ++...|.+..|.+ ...|.++++..|
T Consensus 5 ~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~---------~CpH~g~~l~~g 50 (91)
T cd03477 5 IEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSA---------TCTHLGCIVHWN 50 (91)
T ss_pred hhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcC---------cCCCCCCCCccc
Confidence 3455555544442 22333 3456788888777 589999998765
No 96
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=27.16 E-value=99 Score=22.94 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=31.4
Q ss_pred EEEEeecCCCCCceeeeC-C--CceE-EecccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 161 SFMFYLTDVELGGATIFP-S--LNLT-VFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 161 T~liYLnd~~~GGeT~Fp-~--~~~~-v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
..+.-++|..++|.-.+- . ..+. ++-..|.+-.|.| ...|++.|+..|
T Consensus 2 ~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n---------~CpH~g~~L~~~ 53 (123)
T cd03536 2 VLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLN---------VCPHRGMRISTT 53 (123)
T ss_pred EEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEee---------eCCCCCCCcccc
Confidence 345566777776654442 1 1233 4556888888888 599999998653
No 97
>PF10637 Ofd1_CTDD: Oxoglutarate and iron-dependent oxygenase degradation C-term; InterPro: IPR019601 This entry represents the C-terminal degradation domain of oxoglutarate and iron-dependent oxygenase (Ofd1), the domain being conserved from yeasts to humans. Ofd1 is a prolyl 4-hydroxylase-like 2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation of Sre1N (the N-terminal transcription factor domain of Sre1) in the presence of oxygen []. Yeast Sre1 is the orthologue of mammalian sterol regulatory element binding protein (SREBP), and it responds to changes in oxygen-dependent sterol synthesis as an indirect measure of oxygen availability. However, unlike the prolyl 4-hydroxylases that regulate mammalian hypoxia-inducible factor, Ofd1 uses multiple domains to regulate Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase domain is required for oxygen sensing and this Ofd1 C-terminal domain accelerates Sre1N degradation in yeasts []. ; GO: 0005506 iron ion binding, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0031418 L-ascorbic acid binding, 0055114 oxidation-reduction process; PDB: 3KT4_A 3KT1_A 3KT7_A 3MGU_A.
Probab=26.99 E-value=86 Score=26.99 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=32.7
Q ss_pred HHHHHhccCCCcccccccCCceEEEEeCCCCcceeeeeCCCCCCCCceEEEEEEeecCC------CCCceeeeC
Q psy6259 111 QTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDV------ELGGATIFP 178 (227)
Q Consensus 111 ~~ri~~~~g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~~~~~R~~T~liYLnd~------~~GGeT~Fp 178 (227)
.+-+..+||+.+. ...+.+.|+.+|.-|..=+|.. .....+=+.++|+.. +-||-+.|.
T Consensus 123 ~~~L~~~TgL~l~-----~~~~~~RRfr~G~dYTLa~~~~----~~~~~Ld~~L~ltp~~~W~~~e~GG~e~Ym 187 (266)
T PF10637_consen 123 FKWLSNLTGLDLT-----SCQIEARRFRPGLDYTLATDED----EEEPRLDVTLCLTPSKGWESGEVGGYECYM 187 (266)
T ss_dssp HHHHHHHHSEEE------EEEEEEEEE-TTT-EE--B-------EEEEEEEEEEEE---S-TTTTTT---EEEE
T ss_pred HHHHHHHHCCCCc-----cCceEEEEccCCCCeEEecCCC----CCceEEEEEEEecCCCCCCCCccccEEEEE
Confidence 3445567898663 5669999999998777656554 245667788889854 568878775
No 98
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=26.83 E-value=1e+02 Score=22.28 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=30.6
Q ss_pred EEeecCCC-CCceeeeC--CCceEEe-cccccEEEEEecCCCCCCCCccccccCCCccCe
Q psy6259 163 MFYLTDVE-LGGATIFP--SLNLTVF-PEKGSAVFWYNAHANTLLDYRMYHSGCPVALGN 218 (227)
Q Consensus 163 liYLnd~~-~GGeT~Fp--~~~~~v~-P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~ 218 (227)
+..+++.. .|....|. ...+.|. -..|.+..|.| ...|.++|+..|.
T Consensus 4 v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n---------~CpH~g~~L~~g~ 54 (118)
T cd03469 4 VGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHN---------VCPHRGARLCEGR 54 (118)
T ss_pred eEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEE---------eCCCCCCEeeecc
Confidence 44556666 56544443 2344444 35888888888 6999999998653
No 99
>PRK02963 carbon starvation induced protein; Validated
Probab=26.52 E-value=87 Score=27.72 Aligned_cols=34 Identities=15% Similarity=-0.113 Sum_probs=26.4
Q ss_pred ceEEecccccEEEEEecCCCCCCCCccccccCCCc---cCeEEEE
Q psy6259 181 NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVA---LGNKWGK 222 (227)
Q Consensus 181 ~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~---~G~K~i~ 222 (227)
.+.++-+.|++|+|.|. |.+|+-..-. .|.|+.+
T Consensus 266 ~~~fkL~pGd~vvfDN~--------RVLHGR~aF~~~~g~~R~L~ 302 (316)
T PRK02963 266 ILSVPVPVGKFLLINNL--------FWLHGRDRFTPHPDLRRELM 302 (316)
T ss_pred EEEEecCCceEEEEeCe--------EEeeCCCCcCCCCCCceEEE
Confidence 47889999999999985 7999887764 2455553
No 100
>PLN00139 hypothetical protein; Provisional
Probab=25.96 E-value=70 Score=28.24 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=25.3
Q ss_pred CcceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCC
Q psy6259 141 GHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPS 179 (227)
Q Consensus 141 ~~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 179 (227)
+...||.|..... ..-..+++.-+.-+.+||+|.|=+
T Consensus 111 ~~i~~H~E~sy~~--~pP~~~~f~C~~~p~~GGeT~~aD 147 (320)
T PLN00139 111 EFIYYHHEMVLIK--ESPKKVILFCEIPPPEGGQTPFVP 147 (320)
T ss_pred ccccccccccCcc--CCCceEEEEecccCCCCCCCeeec
Confidence 3567999998754 223345555566677899999865
No 101
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=24.31 E-value=2.8e+02 Score=24.39 Aligned_cols=81 Identities=16% Similarity=0.112 Sum_probs=47.3
Q ss_pred CceEEEEeCCCC-------cceeeeeCCCCCCCCceEEEEEEeecCCCCCceeeeCCC------ceEEecccccEEEEEe
Q psy6259 130 GPLQINNYGLGG-------HYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSL------NLTVFPEKGSAVFWYN 196 (227)
Q Consensus 130 e~~~v~rY~~G~-------~y~~H~D~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~------~~~v~P~~G~al~f~~ 196 (227)
..+++.+|.+.. ...+|.|.. .+|+|+ .|. .||-=+.... =+.|.|..|.+||---
T Consensus 182 ~~lrl~~YP~~~~~~~~~~g~~~HTD~g--------~lTlL~--qd~-v~GLQV~~~~~~~~g~Wi~Vpp~pg~~VVNiG 250 (332)
T PLN03002 182 ATMRLLRYQGISDPSKGIYACGAHSDFG--------MMTLLA--TDG-VMGLQICKDKNAMPQKWEYVPPIKGAFIVNLG 250 (332)
T ss_pred hheeeeeCCCCCCcccCccccccccCCC--------eEEEEe--eCC-CCceEEecCCCCCCCcEEECCCCCCeEEEEHH
Confidence 357889997631 245777763 367774 342 4554445421 2578999999998311
Q ss_pred ----cCCCCCCCCccccccCCCccCeEEEEE
Q psy6259 197 ----AHANTLLDYRMYHSGCPVALGNKWGKL 223 (227)
Q Consensus 197 ----~~~~g~~d~~~~H~g~pV~~G~K~i~~ 223 (227)
.|.+|.. ..+.|++..- ...||.+.
T Consensus 251 D~L~~wTng~~-kSt~HRVv~~-~~~R~Sia 279 (332)
T PLN03002 251 DMLERWSNGFF-KSTLHRVLGN-GQERYSIP 279 (332)
T ss_pred HHHHHHhCCee-ECcCCeecCC-CCCeeEEE
Confidence 1222322 2588999633 34677664
No 102
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=22.95 E-value=1.9e+02 Score=20.88 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=23.6
Q ss_pred ceEEecccccEEEEEecCCCCCCC--CccccccCCCccCeEEEEEec
Q psy6259 181 NLTVFPEKGSAVFWYNAHANTLLD--YRMYHSGCPVALGNKWGKLLL 225 (227)
Q Consensus 181 ~~~v~P~~G~al~f~~~~~~g~~d--~~~~H~g~pV~~G~K~i~~~W 225 (227)
.++|.|+.| -=|+-..++|.++ ...- ....-..-..|++..|
T Consensus 62 ~IkV~P~~G--~~Yyl~d~dg~g~~~~~~~-~~~~~~~~p~W~i~~w 105 (105)
T PF11191_consen 62 MIKVQPKAG--PPYYLVDPDGDGNFSRSDA-NSDSDVSPPQWVIFSW 105 (105)
T ss_pred eEEEEeCCC--CCEEEECCCCCCccccccc-ccCCCCCCcEEEEeeC
Confidence 468999999 3344444555433 2222 1223334478888877
No 103
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=22.37 E-value=1.7e+02 Score=26.68 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=43.1
Q ss_pred eeeeCCCCCCCCceEEEEEEeecCC-CCCceeeeCCCc--e-EEecccccEEEEEecCCCCCCCCccccccCCCccCe
Q psy6259 145 LHCDATPRDEGLWRLASFMFYLTDV-ELGGATIFPSLN--L-TVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGN 218 (227)
Q Consensus 145 ~H~D~~~~~~~~~R~~T~liYLnd~-~~GGeT~Fp~~~--~-~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~ 218 (227)
+-+|+..........+-.+.+.+|. ..|.-+.|.-.+ + -++-..|.+-.|.| .+.|+++|+..|.
T Consensus 58 ~~~~~~~~~~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N---------~CPHRGapLSeG~ 126 (394)
T PLN00095 58 PGVDGAGATADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKD---------ECAHRACPLSLGK 126 (394)
T ss_pred cccccCCCCCchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEec---------cCCCCCCccccCc
Confidence 3344443333345678888999999 556555565443 2 34556788888877 6999999998873
No 104
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=21.52 E-value=1.5e+02 Score=21.57 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=31.1
Q ss_pred EEEEEEeecCCCCCceeeeC--CCceE-EecccccEEEEEecCCCCCCCCccccccCCCccC
Q psy6259 159 LASFMFYLTDVELGGATIFP--SLNLT-VFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALG 217 (227)
Q Consensus 159 ~~T~liYLnd~~~GGeT~Fp--~~~~~-v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G 217 (227)
.+..+..++++. |+...+. ...+. ++-..|.+-.|.| ...|.+.++..|
T Consensus 5 ~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n---------~CpH~g~~L~~G 56 (116)
T cd03532 5 AWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALED---------RCPHRSAPLSKG 56 (116)
T ss_pred cEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCC---------cCCCCCCCccCC
Confidence 456677778877 4433332 22333 3345677777776 699999998776
No 105
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=21.13 E-value=1.9e+02 Score=20.04 Aligned_cols=13 Identities=46% Similarity=1.060 Sum_probs=10.8
Q ss_pred ccccccCCCccCe
Q psy6259 206 RMYHSGCPVALGN 218 (227)
Q Consensus 206 ~~~H~g~pV~~G~ 218 (227)
...|.++|+..|.
T Consensus 41 ~CpH~g~~l~~~~ 53 (98)
T cd03467 41 RCTHQGCPLSEGE 53 (98)
T ss_pred cCCCCCccCCcCc
Confidence 6899999998763
Done!