RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6259
(227 letters)
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded
beta helix, alpha-keto dependent non-heme iron
oxygenase; 1.40A {Bacillus anthracis str}
Length = 216
Score = 203 bits (518), Expect = 2e-66
Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 15/208 (7%)
Query: 18 KSNLKCFYESYNNTF-LKIGPLKVEELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGK 76
++ + ++ N + +++ + +P +V + + + D E + +IELSK K+ R K
Sbjct: 9 ENKEQTIFDHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSK 68
Query: 77 VVNYGDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINN 136
V + D D R S FL D+ KI+ RI + N+ E L I N
Sbjct: 69 VGSSRDV--NDIRTSSGAFL-----DDNELTAKIEKRISSIMNVPASHGE----GLHILN 117
Query: 137 YGLGGHYDLHCDATPRDE---GLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVF 193
Y + Y H D R+++ + YL DVE GG T FP LNL+V P KG AV+
Sbjct: 118 YEVDQQYKAHYDYFAEHSRSAANNRISTLVMYLNDVEEGGETFFPKLNLSVHPRKGMAVY 177
Query: 194 WYNAHANTLLDYRMYHSGCPVALGNKWG 221
+ + + L+ H G PV G KW
Sbjct: 178 FEYFYQDQSLNELTLHGGAPVTKGEKWI 205
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas
reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Length = 224
Score = 184 bits (469), Expect = 6e-59
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 30/208 (14%)
Query: 37 PLKVEELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGKVVNY--GDTIYVDTRLSKVY 94
+V L PR + + + D E + I+E ++ K+ + VV+ G ++ + R S
Sbjct: 10 RGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGT 69
Query: 95 FLYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDA----- 149
+ G+ + KI+ R+ +T + + E LQ+ +Y G Y+ H D
Sbjct: 70 WFAK---GEDSVISKIEKRVAQVTMIPLENHE----GLQVLHYHDGQKYEPHYDYFHDPV 122
Query: 150 -TPRDEGLWRLASFMFYLTDVELGGATIFPSLN---------------LTVFPEKGSAVF 193
+ G R+ + + YLT VE GG T+ P+ L V P KG A+
Sbjct: 123 NAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALM 182
Query: 194 WYNAHANTLLDYRMYHSGCPVALGNKWG 221
+Y+ + D H CP G+KW
Sbjct: 183 FYSLKPDGSNDPASLHGSCPTLKGDKWS 210
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural
genomics, JOI for structural genomics, JCSG; 2.26A
{Shewanella baltica OS155}
Length = 243
Score = 43.4 bits (102), Expect = 2e-05
Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 16/166 (9%)
Query: 39 KVEELYLDPRVVKIHDAIYDSEINRIIE-LSKGKVERGKVVNYGDTIYVDTR--LSKVYF 95
E LY +++I + E++ + E L + G + L K
Sbjct: 11 HHENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAMATTRKRNQQLDKDDP 70
Query: 96 LYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDA---TPR 152
+ + +I R+ V P N Y G + H D +
Sbjct: 71 VAVALGQ------QIMDRLLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTP 124
Query: 153 DEGLWRLASFMFYLTDVE--LGGATIF--PSLNLTVFPEKGSAVFW 194
D + S +L++ E GG + ++ GS V +
Sbjct: 125 DGMIRTDLSATLFLSEPENYQGGELVIQDTYGQQSIKLSAGSLVLY 170
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 8e-04
Identities = 34/242 (14%), Positives = 73/242 (30%), Gaps = 68/242 (28%)
Query: 4 PLACQGN---LS-VPEDIKSNLKC--FYESYN----NTFLKIG-----PLKVEELYLD-- 46
N LS + E I+ L ++ N T ++ P + +++
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 47 --PRVVKI---------HDAIYDSEINRIIEL-SKGKVERGKVVNYGDTIYVDTRLSKVY 94
P I D I + + +L VE+ TI +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ---PKESTISI-------- 428
Query: 95 FLYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDE 154
+++ ++++ L +++Y + +D P +
Sbjct: 429 ---------PSIYLELKVKLENEYAL----HRSI-----VDHYNIPKTFDSDDLIPPYLD 470
Query: 155 GLWRLASFMFY-LTDVELGG-ATIFPS--LNLTVFPEK----GSAVFWYNAHANTLLDYR 206
+ S + + L ++E T+F L+ +K +A + NTL +
Sbjct: 471 QYF--YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 207 MY 208
Y
Sbjct: 529 FY 530
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold,
dioxygenase, iron, mRNP complex, prolyl hydroxylase;
HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A
3kt4_A 3mgu_A
Length = 633
Score = 34.6 bits (78), Expect = 0.024
Identities = 40/212 (18%), Positives = 60/212 (28%), Gaps = 39/212 (18%)
Query: 24 FYESYNNTFLKIGPLK---VEELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGKVVNY 80
F + P + EL D + + EI I +K + + +V
Sbjct: 20 FQDGLKKEIEDSQPYNWGTIHELVNDDLLRAVRK-----EIETEIHFTKKETDIYRVNQS 74
Query: 81 GDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTR--IQDMTNLVIGREERYKGPLQINNYG 138
GD + P +F LY Q R +T G+ K + IN Y
Sbjct: 75 GDLANLSGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTK--AGKLSGSKTDMSINTYT 132
Query: 139 LGGHYDLHCDATPRDEGLWRLASFMFYLTDV------ELGGATIF----------PSLNL 182
G H H D R SF+ YL D GG +
Sbjct: 133 KGCHLLTHDDVIGS-----RRISFILYLPDPDRKWKSHYGGGLRLFPSILPNVPHSDPSA 187
Query: 183 TVFPEKGSAVFWYNAHANTLLDYRMYHSGCPV 214
+ P+ F+ + +H V
Sbjct: 188 KLVPQFNQIAFFKVLPGFS------FHDXEEV 213
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 32.9 bits (74), Expect = 0.054
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 45 LDPRVVKIHDAIYDSEINRIIELSKGKVERGKVVNYGDTIYVDTRLSKVYFLYPEI 100
+ RVV + D + ++ + + R + + GD++ VDT+ + P +
Sbjct: 181 DEERVVWLADPLIAEDLPDGLPEALNDDTRPRKLRPGDSLLVDTKAGYAFERIPLV 236
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.73
Identities = 49/311 (15%), Positives = 82/311 (26%), Gaps = 112/311 (36%)
Query: 4 PLA-CQGNLSVPEDIKSNLKCFYESYNNTFLKIGPLKVEELYLD--PR------------ 48
PL G+L + + F KI P E D P
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 49 VVKIHDAIYDSEINRIIELSKGKVERGKVVNY--GDTIY---------VDTRLSKV---- 93
V + + + ++++ L + E Y G+ I+ DT L K
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFEN----CYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 94 --YF----------------------------LYPEIFG-----DHPF-----LYKI-QT 112
Y L IFG D F LY+
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-IFGGQGNTDDYFEELRDLYQTYHV 182
Query: 113 RIQDMTNLVIGR-EERYKGPLQINN-YGLGGHYDL-----HCDATPRDE----------- 154
+ D+ E + L + G ++ + TP +
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQG--LNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 155 -GLWRLASFMFYLTDVELGGAT---IFPSLNLTVFPEKG--SAVF------WYNAHANTL 202
G+ +LA Y+ +L G T + L +G +AV W + +
Sbjct: 241 IGVIQLAH---YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 203 LDYR-MYHSGC 212
++ G
Sbjct: 298 KAITVLFFIGV 308
>3f02_C Neuroserpin; cleaved form, fenib, human, disease MUT glycoprotein,
protease inhibitor, secreted, serine protease inhibitor,
hydrolase inhibitor; 1.80A {Homo sapiens} PDB: 1jjo_E
Length = 48
Score = 27.1 bits (60), Expect = 0.89
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 96 LYPEIFGDHPFLYKIQTRIQDMTN--LVIGR 124
LYP++ DHPF + I+ T L +GR
Sbjct: 4 LYPQVIVDHPFFFLIR---NRRTGTILFMGR 31
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 29.1 bits (66), Expect = 1.3
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 15/51 (29%)
Query: 150 TPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
D R+A D+E+ G I G V N+ AN
Sbjct: 289 AIADIAGGRVA-----TADIEVEGQLI----------RAGEGVIVVNSIAN 324
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 28.7 bits (65), Expect = 1.7
Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 15/51 (29%)
Query: 150 TPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
T + R A DV +G + + N AN
Sbjct: 285 TASALAIKRTA-----KEDVMIGDKLV----------RANEGIIASNQSAN 320
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 28.7 bits (65), Expect = 1.8
Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 15/51 (29%)
Query: 150 TPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
T D RLA DVE+GG +I + G V AN
Sbjct: 290 TIADGVTSRLA-----TEDVEIGGVSI----------KAGEGVIVSMLSAN 325
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 28.4 bits (64), Expect = 2.0
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 15/51 (29%)
Query: 150 TPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
R+A D E+ G I G+ VF A+
Sbjct: 298 PTLPVTATRVA-----AEDFEVNGVRI----------PTGTPVFMCAHVAH 333
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 28.4 bits (64), Expect = 2.2
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 15/51 (29%)
Query: 150 TPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
+ D R+A D+EL G T+ V A AN
Sbjct: 294 SVADSIPLRVA-----AEDIELSGRTV----------PADDGVIALLAGAN 329
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 28.0 bits (63), Expect = 2.6
Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 15/51 (29%)
Query: 150 TPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
T G R+A DVELGG I KG V + A+
Sbjct: 282 TIGQFGGERVA-----TRDVELGGVRI----------AKGEQVVAHVLAAD 317
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 27.9 bits (63), Expect = 3.0
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 15/51 (29%)
Query: 150 TPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
+ + R+A L DV + G I G + N
Sbjct: 271 SIVEAPAPRVA-----LADVRMAGRDI----------HAGDVLTCSMLATN 306
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 28.0 bits (63), Expect = 3.0
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 15/51 (29%)
Query: 150 TPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
+P RLA + DV + G I + G V AN
Sbjct: 290 SPVQAPNPRLA-----IKDVVIDGQLI----------KAGDYVLCSILMAN 325
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 27.6 bits (62), Expect = 3.2
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 15/51 (29%)
Query: 150 TPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
+GL RLA D+++G + KG V AN
Sbjct: 278 LSFADGLPRLA-----TADIQVGDVLV----------RKGELVLVLLEGAN 313
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 27.6 bits (62), Expect = 3.5
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 15/51 (29%)
Query: 150 TPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
T R+A D+ L G I +KG +V AN
Sbjct: 281 TVPYSPTPRIA-----REDLTLAGQEI----------KKGDSVICSLPAAN 316
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 27.2 bits (61), Expect = 4.6
Identities = 12/51 (23%), Positives = 14/51 (27%), Gaps = 15/51 (29%)
Query: 150 TPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
+P + R DV G TI G V A AN
Sbjct: 281 SPVSQAPIRFT-----AEDVTYSGVTI----------PAGEMVMLGLAAAN 316
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 27.2 bits (61), Expect = 5.3
Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 37/78 (47%)
Query: 125 EE--RYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLNL 182
+E R+ L+I G R A D+E GA+I
Sbjct: 292 DEVLRFDNILRI--------------------GTVRFA-----RQDLEYCGASI------ 320
Query: 183 TVFPEKGSAVFWYNAHAN 200
+KG VF A
Sbjct: 321 ----KKGEMVFLLIPSAL 334
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 27.2 bits (61), Expect = 5.5
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 15/51 (29%)
Query: 150 TPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
P + +R + V+L G I G V A A+
Sbjct: 308 GPVESATYRFP-----VEPVDLDGTVI----------PAGDTVLVVLADAH 343
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 26.8 bits (60), Expect = 5.9
Identities = 12/56 (21%), Positives = 13/56 (23%), Gaps = 15/56 (26%)
Query: 145 LHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
R A + DV L G TI G V AN
Sbjct: 295 TRWVPLGVGTAFPRYA-----VEDVTLRGVTI----------RAGEPVLASTGAAN 335
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 26.8 bits (60), Expect = 6.1
Identities = 11/51 (21%), Positives = 13/51 (25%), Gaps = 15/51 (29%)
Query: 150 TPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
TP L R A DV +G I G A+
Sbjct: 287 TPTSHVLIRFA-----AEDVPVGDRVI----------PAGDALIVSYGALG 322
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 26.4 bits (59), Expect = 7.7
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 15/46 (32%)
Query: 155 GLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHAN 200
GL R+A L DVE+ G I G AV+ AN
Sbjct: 292 GLSRIA-----LEDVEIKGVRI----------RAGDAVYVSYLAAN 322
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics; 3.15A {Pediococcus pentosaceus}
Length = 114
Score = 25.5 bits (56), Expect = 7.7
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 161 SFMFYLTDVELGGATIF 177
Y V++GGAT+
Sbjct: 88 GTTAYPIKVQVGGATVL 104
>1sek_A Serpin K; serine protease inhibitor, protease; 2.10A {Manduca
sexta} SCOP: e.1.1.1 PDB: 1k9o_I
Length = 378
Score = 26.4 bits (59), Expect = 8.9
Identities = 4/29 (13%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 96 LYPEIFGDHPFLYKIQTRIQDMTNLVIGR 124
P++ + PF + ++ + ++ G
Sbjct: 349 FVPKVEINKPFFFSLKY---NRNSMFSGV 374
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.143 0.443
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,600,911
Number of extensions: 212456
Number of successful extensions: 535
Number of sequences better than 10.0: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 31
Length of query: 227
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,188,903
Effective search space: 573879711
Effective search space used: 573879711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)