RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6259
         (227 letters)



>d2gmfa_ a.26.1.2 (A:) Granulocyte-macrophage colony-stimulating
           factor (GM-CSF) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 26.7 bits (59), Expect = 1.4
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 110 IQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDE 154
           +QTR++     + G   + KGPL +    +  HY  HC  TP   
Sbjct: 52  LQTRLELYKQGLRGSLTKLKGPLTM----MASHYKQHCPPTPETS 92


>d1k9oi_ e.1.1.1 (I:) Alaserpin (serpin 1) {Tobacco hornworm
           (Manduca sexta) [TaxId: 7130]}
          Length = 376

 Score = 27.1 bits (59), Expect = 1.9
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 96  LYPEIFGDHPFLYKIQTRIQDMTNLVIGR 124
           LYPE+  D PF ++++    D   +  G+
Sbjct: 347 LYPEVHIDRPFYFELKI---DGIPMFNGK 372


>g1jjo.1 e.1.1.1 (A:,C:,E:) Neuroserpin {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 334

 Score = 25.9 bits (56), Expect = 5.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 97  YPEIFGDHPFLYKIQTRIQDMTNLVIGR 124
           YP++  DHPFLY I+ R   +  L +GR
Sbjct: 302 YPQVIVDHPFLYLIRNRKSGII-LFMGR 328


>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central
           domain {Maize (Zea mays) [TaxId: 4577]}
          Length = 135

 Score = 25.0 bits (54), Expect = 5.6
 Identities = 6/40 (15%), Positives = 15/40 (37%)

Query: 55  AIYDSEINRIIELSKGKVERGKVVNYGDTIYVDTRLSKVY 94
            +      R+ +  K     G V+  G+ + ++    +V 
Sbjct: 88  CVSGCSGIRVNDAEKLVTIGGHVLREGEWLSLNGSTGEVI 127


>d1xmxa_ c.52.1.26 (A:) Hypothetical protein VC1899 {Vibrio cholerae
           [TaxId: 666]}
          Length = 385

 Score = 25.7 bits (56), Expect = 5.6
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 83  TIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPL 132
              V+     + +LYPE  G++    + +  I D   +   R E  +  L
Sbjct: 115 IFVVEPNSDCLCWLYPE--GNNDTQVQDRITIADYLTIFGARGEFNEHQL 162


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.143    0.443 

Gapped
Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 899,046
Number of extensions: 42233
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 9
Length of query: 227
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,281,736
Effective search space: 185851720
Effective search space used: 185851720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)