BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6263
(913 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R9I6|PSMD2_PONAB 26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii
GN=PSMD2 PE=2 SV=1
Length = 908
Score = 1026 bits (2654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/910 (56%), Positives = 664/910 (72%), Gaps = 34/910 (3%)
Query: 8 PDKDEKVTKGKGEKNPDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTST 67
P E+ G +K E+SEEDK+LQ++L MLVE++ D LY PALE +R IR+ST
Sbjct: 28 PSGKERRDAGDKDKE-QELSEEDKQLQDELEMLVERLGEKDTSLYRPALEELRRQIRSST 86
Query: 68 TSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLM 127
TSMTSVP PLKFLR HYG LKE E M + K+ IISVLAM+ E+ECLKY L+
Sbjct: 87 TSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMSG-ERECLKYRLV 145
Query: 128 AKQKDVGDWGHEYVRQLEAEIAEEWA----TNKYEKPQLLELIEDIIQFDMKHNAEIQAC 183
Q+++ WGHEYVR L E+A+EW K ++ LL L+++II ++M HNAE +AC
Sbjct: 146 GSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQREPLLTLVKEIIPYNMAHNAEHEAC 205
Query: 184 DLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRA 243
DLLMEI+ +++L+K +D Y +VCLYL++C YV EPE S + L + KF +P A
Sbjct: 206 DLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEA 265
Query: 244 LTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSH 303
L LAL LND V IF C+D VV+KQ+A+M GR + +EL +++ + DL IM+N
Sbjct: 266 LRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSNVQ 325
Query: 304 INDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVN 363
+N +F +LARELDIMEPK P+++YKT LEN + + VDSAR NLAS+FVN FVN
Sbjct: 326 LNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGS---QVDSARMNLASSFVNGFVN 382
Query: 364 AGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIK 423
A F +DKL++ +DGNKW+YKNK HGMLSAAASLG+I LWDVDGGLT IDKYLY+SEDYIK
Sbjct: 383 AAFGQDKLLT-DDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSEDYIK 441
Query: 424 AGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLL 483
+GALLA GIVN GVRNECDPALALLSDYVL++S T+R+G++ GLGLAYAG+ R++V+TLL
Sbjct: 442 SGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAGSNREDVLTLL 501
Query: 484 LPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPL 543
LPV+ D KS+ EV A+A +I VG+ +V S ILQT++E +EL+D Y+R+LPL
Sbjct: 502 LPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETELKD-TYARWLPL 560
Query: 544 ALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHY 603
L + +LGK +AI+ LAALEV+ +PFRS A ++ +CAYAGSG+VL VQ+ LH+CSEH+
Sbjct: 561 GLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHF 620
Query: 604 TPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGV 663
++ A PA D+ + Q VA LG+
Sbjct: 621 DSKEKEEDKDKKEKKDKDKKEA-------PA----------------DMGAHQGVAVLGI 657
Query: 664 AVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDL 723
A++A+GEEIG+EM+ R FG L RYGEPT+RRAVPLA+AL S+SNP LN++D L+K+SHD
Sbjct: 658 ALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDA 717
Query: 724 DEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVS 783
D EV++N+IF+MG+VG+GTNNARLA MLRQLAQYH K+ +LFMVR+AQGLTH+GKGT++
Sbjct: 718 DPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLT 777
Query: 784 LSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQ 843
L P+H+DRQ+++ VA+AGLL VL SFLD +NIILGKSHY+LY LV AM PR LVT DE
Sbjct: 778 LCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEEL 837
Query: 844 EPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGF 903
P+ VSVRVGQAVDV+G+AG PKTI G THTTPVLLA GERAELAT++++P+TP++EGF
Sbjct: 838 RPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGF 897
Query: 904 VILRKKDKDD 913
VILRK D
Sbjct: 898 VILRKNPNYD 907
>sp|Q4FZT9|PSMD2_RAT 26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus
GN=Psmd2 PE=2 SV=1
Length = 908
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/916 (56%), Positives = 668/916 (72%), Gaps = 38/916 (4%)
Query: 2 PEKIAVPDKDEKVT----KGKGEKNPD-EMSEEDKRLQEDLNMLVEKIKGSDKHLYLPAL 56
P A DEK + + GEK+ + E+SEEDK+LQ++L MLVE++ D LY PAL
Sbjct: 16 PSATAPSGADEKSSGKERRDAGEKDKEQELSEEDKQLQDELEMLVERLGEKDTSLYRPAL 75
Query: 57 ESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDN 116
E +R IR+STTSMTSVP PLKFLR HYG LKE E M + K IISVLAM+
Sbjct: 76 EELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKCFAADIISVLAMTMSG 135
Query: 117 VEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWA----TNKYEKPQLLELIEDIIQF 172
E+ECLKY L+ Q+++ WGHEYVR L E+A+EW K ++ LL L+++I+ +
Sbjct: 136 -ERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKAQREPLLTLVKEIVPY 194
Query: 173 DMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLN 232
+M HNAE +ACDLLMEI+ +++L+K +D Y +VCLYL++C YV EPE S + L
Sbjct: 195 NMAHNAEHEACDLLMEIEQVDMLEKDIDENAYSKVCLYLTSCVNYVPEPENSALLRCALG 254
Query: 233 NYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDK 292
+ KF +P AL LAL LND V IF C+D VV+KQ+A+M GR + +EL +++ +
Sbjct: 255 VFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEY 314
Query: 293 NDLQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHN 352
DL IM+N +N +F +LARELDIMEPK P+++YKT LEN + + VDSAR N
Sbjct: 315 EDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGS---QVDSARMN 371
Query: 353 LASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPID 412
LAS+FVN FVNA F +DKL++ +DGNKW+YKNK HGMLSAAASLG+I LWDVDGGLT ID
Sbjct: 372 LASSFVNGFVNAAFGQDKLLT-DDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQID 430
Query: 413 KYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYA 472
KYLY+SEDYIK+GALLA GIVN GVRNECDPALALLSDYVL++S T+R+G++ GLGLAYA
Sbjct: 431 KYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYA 490
Query: 473 GTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSEL 532
G+ R++V+TLLLPV+ D KS+ EV A+A +I VG+ +V S ILQT++E +EL
Sbjct: 491 GSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETEL 550
Query: 533 QDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVV 592
+D Y+R+LPL L + +LGK +AI+ LAALEV+ +PFRS A ++ +CAYAGSG+VL V
Sbjct: 551 KD-TYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKV 609
Query: 593 QEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDL 652
Q+ LH+CSEH+ ++ A PA D+
Sbjct: 610 QQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEA-------PA----------------DM 646
Query: 653 SSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNV 712
+ Q VA LG+A++A+GEEIG+EM+ R FG L RYGEPT+RRAVPLA+AL S+SNP LN+
Sbjct: 647 GAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNI 706
Query: 713 IDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQ 772
+D L+K+SHD D EV++N+IF+MG+VG+GTNNARLA MLRQLAQYH K+ +LFMVR+AQ
Sbjct: 707 LDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQ 766
Query: 773 GLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMY 832
GLTH+GKGT++L P+H+DRQ+++ VA+AGLL VL SFLD +NIILGKSHY+LY LV AM
Sbjct: 767 GLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQ 826
Query: 833 PRWLVTLDENQEPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDD 892
PR LVT DE P+ VSVRVGQAVDV+G+AG PKTI G THTTPVLLA GERAELAT++
Sbjct: 827 PRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEE 886
Query: 893 YVPLTPVMEGFVILRK 908
++P+TP++EGFVILRK
Sbjct: 887 FLPVTPILEGFVILRK 902
>sp|Q13200|PSMD2_HUMAN 26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens
GN=PSMD2 PE=1 SV=3
Length = 908
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/910 (56%), Positives = 664/910 (72%), Gaps = 34/910 (3%)
Query: 8 PDKDEKVTKGKGEKNPDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTST 67
P E+ G +K E+SEEDK+LQ++L MLVE++ D LY PALE +R IR+ST
Sbjct: 28 PSGKERRDAGDKDKE-QELSEEDKQLQDELEMLVERLGEKDTSLYRPALEELRRQIRSST 86
Query: 68 TSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLM 127
TSMTSVP PLKFLR HYG LKE E M + K+ IISVLAM+ E+ECLKY L+
Sbjct: 87 TSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMSG-ERECLKYRLV 145
Query: 128 AKQKDVGDWGHEYVRQLEAEIAEEWA----TNKYEKPQLLELIEDIIQFDMKHNAEIQAC 183
Q+++ WGHEYVR L E+A+EW K ++ LL L+++I+ ++M HNAE +AC
Sbjct: 146 GSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQREPLLTLVKEIVPYNMAHNAEHEAC 205
Query: 184 DLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRA 243
DLLMEI+ +++L+K +D Y +VCLYL++C YV EPE S + L + KF +P A
Sbjct: 206 DLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEA 265
Query: 244 LTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSH 303
L LAL LND V IF C+D VV+KQ+A+M GR + +EL +++ + DL IM+N
Sbjct: 266 LRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSNVQ 325
Query: 304 INDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVN 363
+N +F +LARELDIMEPK P+++YKT LEN + + VDSAR NLAS+FVN FVN
Sbjct: 326 LNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGS---QVDSARMNLASSFVNGFVN 382
Query: 364 AGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIK 423
A F +DKL++ +DGNKW+YKNK HGMLSAAASLG+I LWDVDGGLT IDKYLY+SEDYIK
Sbjct: 383 AAFGQDKLLT-DDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSEDYIK 441
Query: 424 AGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLL 483
+GALLA GIVN GVRNECDPALALLSDYVL++S T+R+G++ GLGLAYAG+ R++V+TLL
Sbjct: 442 SGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAGSNREDVLTLL 501
Query: 484 LPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPL 543
LPV+ D KS+ EV A+A +I VG+ +V S ILQT++E +EL+D Y+R+LPL
Sbjct: 502 LPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETELKD-TYARWLPL 560
Query: 544 ALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHY 603
L + +LGK +AI+ LAALEV+ +PFRS A ++ +CAYAGSG+VL VQ+ LH+CSEH+
Sbjct: 561 GLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHF 620
Query: 604 TPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGV 663
++ A PA D+ + Q VA LG+
Sbjct: 621 DSKEKEEDKDKKEKKDKDKKEA-------PA----------------DMGAHQGVAVLGI 657
Query: 664 AVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDL 723
A++A+GEEIG+EM+ R FG L RYGEPT+RRAVPLA+AL S+SNP LN++D L+K+SHD
Sbjct: 658 ALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDA 717
Query: 724 DEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVS 783
D EV++N+IF+MG+VG+GTNNARLA MLRQLAQYH K+ +LFMVR+AQGLTH+GKGT++
Sbjct: 718 DPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLT 777
Query: 784 LSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQ 843
L P+H+DRQ+++ VA+AGLL VL SFLD +NIILGKSHY+LY LV AM PR LVT DE
Sbjct: 778 LCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEEL 837
Query: 844 EPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGF 903
P+ VSVRVGQAVDV+G+AG PKTI G THTTPVLLA GERAELAT++++P+TP++EGF
Sbjct: 838 RPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGF 897
Query: 904 VILRKKDKDD 913
VILRK D
Sbjct: 898 VILRKNPNYD 907
>sp|P56701|PSMD2_BOVIN 26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus
GN=PSMD2 PE=1 SV=2
Length = 908
Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/910 (56%), Positives = 664/910 (72%), Gaps = 34/910 (3%)
Query: 8 PDKDEKVTKGKGEKNPDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTST 67
P E+ G +K E+SEEDK+LQ++L MLVE++ D LY PALE +R IR+ST
Sbjct: 28 PSGKERRDAGDKDKE-QELSEEDKQLQDELEMLVERLGEKDTSLYRPALEELRRQIRSST 86
Query: 68 TSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLM 127
TSMTSVP PLKFLR HYG LKE E M + K+ IISVLAM+ E+ECLKY L+
Sbjct: 87 TSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMSG-ERECLKYRLV 145
Query: 128 AKQKDVGDWGHEYVRQLEAEIAEEWA----TNKYEKPQLLELIEDIIQFDMKHNAEIQAC 183
Q+++ WGHEYVR L E+A+EW K ++ LL L+++I+ ++M HNAE +AC
Sbjct: 146 GSQEELASWGHEYVRHLAGEVAKEWQELDDAEKTQREPLLTLVKEIVPYNMAHNAEHEAC 205
Query: 184 DLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRA 243
DLLMEI+ +++L+K +D Y +VCLYL++C YV EPE S + L + KF +P A
Sbjct: 206 DLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEA 265
Query: 244 LTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSH 303
L LAL LND V IF C+D VV+KQ+A+M GR + +EL +++ + DL IM+N
Sbjct: 266 LRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSNVQ 325
Query: 304 INDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVN 363
+N +F +LARELDIMEPK P+++YKT LEN + + VDSAR NLAS+FVN FVN
Sbjct: 326 LNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGS---QVDSARMNLASSFVNGFVN 382
Query: 364 AGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIK 423
A F +DKL++ +DGNKW+YKNK HGMLSAAASLG+I LWDVDGGLT IDKYLY+SEDYIK
Sbjct: 383 AAFGQDKLLT-DDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSEDYIK 441
Query: 424 AGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLL 483
+GALLA GIVN GVRNECDPALALLSDYVL++S T+R+G++ GLGLAYAG+ R++V+TLL
Sbjct: 442 SGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAGSNREDVLTLL 501
Query: 484 LPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPL 543
LPV+ D KS+ EV A+A +I VG+ +V S ILQT++E +EL+D Y+R+LPL
Sbjct: 502 LPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETELKD-TYARWLPL 560
Query: 544 ALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHY 603
L + +LGK +AI+ LAALEV+ +PFRS A ++ +CAYAGSG+VL VQ+ LH+CSEH+
Sbjct: 561 GLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHF 620
Query: 604 TPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGV 663
++ A PA D+ + Q VA LG+
Sbjct: 621 DSKEKEEDKDKKEKKDKDKKEA-------PA----------------DMGAHQGVAVLGI 657
Query: 664 AVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDL 723
A++A+GEEIG+EM+ R FG L RYGEPT+RRAVPLA+AL S+SNP LN++D L+K+SHD
Sbjct: 658 ALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDA 717
Query: 724 DEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVS 783
D EV++N+IF+MG+VG+GTNNARLA MLRQLAQYH K+ +LFMVR+AQGLTH+GKGT++
Sbjct: 718 DPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLT 777
Query: 784 LSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQ 843
L P+H+DRQ+++ VA+AGLL VL SFLD +NIILGKSHY+LY LV AM PR LVT DE
Sbjct: 778 LCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEEL 837
Query: 844 EPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGF 903
P+ VSVRVGQAVDV+G+AG PKTI G THTTPVLLA GERAELAT++++P+TP++EGF
Sbjct: 838 RPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGF 897
Query: 904 VILRKKDKDD 913
VILRK D
Sbjct: 898 VILRKNPNYD 907
>sp|Q8VDM4|PSMD2_MOUSE 26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus
GN=Psmd2 PE=1 SV=1
Length = 908
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/906 (56%), Positives = 664/906 (73%), Gaps = 34/906 (3%)
Query: 13 KVTKGKGEKNPD-EMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMT 71
K + GEK+ + E+SEEDK+LQ++L MLVE++ D LY PALE +R IR+STTSMT
Sbjct: 31 KERRDAGEKDKEQELSEEDKQLQDELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMT 90
Query: 72 SVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQK 131
SVP PLKFLR HYG LKE E M + K IISVLAM+ E+ECLKY L+ Q+
Sbjct: 91 SVPKPLKFLRPHYGKLKEIYENMAPGENKCFAADIISVLAMTMSG-ERECLKYRLVGSQE 149
Query: 132 DVGDWGHEYVRQLEAEIAEEWA----TNKYEKPQLLELIEDIIQFDMKHNAEIQACDLLM 187
++ WGHEYVR L E+A+EW K ++ LL L+++I+ ++M HNAE +ACDLLM
Sbjct: 150 ELASWGHEYVRHLAGEVAKEWQELDDAEKAQREPLLTLVKEIVPYNMAHNAEHEACDLLM 209
Query: 188 EIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLA 247
EI+ +++L+K +D Y +VCLYL++C YV EPE S + L + KF +P AL LA
Sbjct: 210 EIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLA 269
Query: 248 LQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHINDH 307
L LND V IF C+D VV+KQ+A+M GR + +EL +++ + DL IM+N +N +
Sbjct: 270 LMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSNVQLNSN 329
Query: 308 FHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFS 367
F +LARELDIMEPK P+++YKT LEN + + VDSAR NLAS+FVN FVNA F
Sbjct: 330 FLALARELDIMEPKVPDDIYKTHLENNRFGGSGS---QVDSARMNLASSFVNGFVNAAFG 386
Query: 368 RDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGAL 427
+DKL++ +DGNKW+YKNK HGMLSAAASLG+I LWDVDGGLT IDKYLY+SEDYIK+GAL
Sbjct: 387 QDKLLT-DDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSEDYIKSGAL 445
Query: 428 LALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVL 487
LA GIVN GVRNECDPALALLSDYVL++S T+R+G++ GLGLAYAG+ R++V+TLLLPV+
Sbjct: 446 LACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAGSNREDVLTLLLPVM 505
Query: 488 TDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAI 547
D KS+ EV A+A +I VG+ +V S ILQT++E +EL+D Y+R+LPL L +
Sbjct: 506 GDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETELKD-TYARWLPLGLGL 564
Query: 548 TYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTT 607
+LGK +AI+ LAALEV+ +PFRS A ++ +CAYAGSG+VL VQ+ LH+CSEH+
Sbjct: 565 NHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKE 624
Query: 608 SSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVA 667
++ A PA D+ + Q VA LG+A++A
Sbjct: 625 KEEDKDKKEKKDKDKKEA-------PA----------------DMGAHQGVAVLGIALIA 661
Query: 668 LGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEV 727
+GEEIG+EM+ R FG L RYGEPT+RRAVPLA+AL S+SNP LN++D L+K+SHD D EV
Sbjct: 662 MGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPEV 721
Query: 728 AHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPF 787
++N+IF+MG+VG+GTNNARLA MLRQLAQYH K+ +LFMVR+AQGLTH+GKGT++L P+
Sbjct: 722 SYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPY 781
Query: 788 HTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVS 847
H+DRQ+++ VA+AGLL VL SFLD +NIILGKSHY+LY LV AM PR LVT DE P+
Sbjct: 782 HSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLP 841
Query: 848 VSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGFVILR 907
VSVRVGQAVDV+G+AG PKTI G THTTPVLLA GERAELAT++++P+TP++EGFVILR
Sbjct: 842 VSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILR 901
Query: 908 KKDKDD 913
K D
Sbjct: 902 KNPNYD 907
>sp|Q9SIV2|RPN1A_ARATH 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis
thaliana GN=RPN1A PE=1 SV=2
Length = 891
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/899 (47%), Positives = 597/899 (66%), Gaps = 69/899 (7%)
Query: 26 MSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYG 85
+SEED L+++L + VE+++ + L ALESMR IR ST+SMTSVP PLKFLR HYG
Sbjct: 39 LSEEDLELKQNLELYVERVQDPNPELQKAALESMRQEIRASTSSMTSVPKPLKFLRPHYG 98
Query: 86 ALKEACEKMTDQKPKKLLCSIISVLA--MSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQ 143
LK E M D KK L I+SVLA MS D E+E L++ L+ + D+G WGHEYVR
Sbjct: 99 TLKAFHETMADSDLKKYLSDILSVLALTMSADG-ERESLRFRLIGTEGDIGSWGHEYVRN 157
Query: 144 LEAEIAEEWATNKYEKPQ---LLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMD 200
L EIA+E+ + E+ L+EL++ I+ F MKHNAE +A DLLM+++ L+LL +H+D
Sbjct: 158 LAGEIAQEYTKRQSEEASIDDLMELVQQIVAFHMKHNAETEAVDLLMDVEDLDLLLEHVD 217
Query: 201 VTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIF 260
TN+ R C YL++ A Y+ P+ ++ + Y+KF+EYP AL +AL L++ V ++F
Sbjct: 218 KTNFKRTCNYLTSAARYLPGPDDMLVLDISYMIYMKFEEYPNALQIALFLDNTQYVKQVF 277
Query: 261 QLCEDPVVRKQLAYMAGRQQITIELPDEMPD----KNDLQIIMTNSHINDHFHSLARELD 316
C D + +KQ YM R IT EL DEM + LQ I+ N+ +++ + +LAR+++
Sbjct: 278 TSCTDLLKKKQFCYMIARHGITFELDDEMVADDDDREALQDIVNNTKLSEGYLTLARDIE 337
Query: 317 IMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSV-- 374
+ME KTPE++YK L L + VDSAR NLA+TFVNAFVNAGF +DKL++V
Sbjct: 338 VMEAKTPEDIYKAHL----LDGRASSGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPS 393
Query: 375 -----EDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLA 429
GN W++KNK+HG SAAASLG+I LWDVD GL+ +DKY +++++ I AGALL
Sbjct: 394 DSTTGSSGN-WLFKNKEHGKTSAAASLGMIQLWDVDSGLSQLDKYFHSNDNPIIAGALLG 452
Query: 430 LGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTD 489
+GIVNCG++N+CDPALALL DY+ + ++RIGA++GLG++YAG++ ++ L P+L D
Sbjct: 453 VGIVNCGIKNDCDPALALLGDYIDKEDSSVRIGAIMGLGISYAGSQNDQIRNKLSPILND 512
Query: 490 RKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITY 549
K+ +V+AFA+++ +IYVG+ EVA +I+ L++ +EL D +RFLPL L + Y
Sbjct: 513 AKAPLDVIAFASLSLGMIYVGSCNEEVAQSIIFALMDRSEAELGDA-LTRFLPLGLGLLY 571
Query: 550 LGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSS 609
LGK+++++ T + + R M L CAYAG+G+VL VQ+ L C EH
Sbjct: 572 LGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQDLLAQCGEHL------ 625
Query: 610 AKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALG 669
EK D Q A LG+A+VA+
Sbjct: 626 --------------------------------EKGDIH--------QGPAVLGLAMVAMS 645
Query: 670 EEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAH 729
EE+G +M R ++ +YGE +RRAVPLA+ L +SNP + V+D L++ SHD D EVA
Sbjct: 646 EELGVDMEIRSLERMLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSRLSHDTDSEVAM 705
Query: 730 NAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHT 789
+AI S+GL+GAGTNNAR+A MLR L+ Y+ K+ LF VRIAQGL HMGKG ++LSPFH+
Sbjct: 706 SAIISLGLIGAGTNNARIAGMLRNLSSYYYKDMSLLFCVRIAQGLVHMGKGLLTLSPFHS 765
Query: 790 DRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVS 849
+R +L+P ALAG++ +L + LD K IILGK HY+LY LV AM PR ++T+DEN +P+SV
Sbjct: 766 ERFLLSPTALAGIVTLLHACLDMKPIILGKYHYVLYFLVLAMQPRMMLTVDENLKPLSVP 825
Query: 850 VRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGFVILRK 908
VRVGQAVDV+G+AG PKTI G TH+TPVLLA GERAELATD Y+PL+P++EGF+IL++
Sbjct: 826 VRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGERAELATDKYIPLSPILEGFIILKE 884
>sp|Q6XJG8|RPN1B_ARATH 26S proteasome non-ATPase regulatory subunit 2 1B OS=Arabidopsis
thaliana GN=RPN1B PE=2 SV=1
Length = 891
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/897 (46%), Positives = 588/897 (65%), Gaps = 65/897 (7%)
Query: 26 MSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYG 85
+SEED +L+++L + VE+++ + L ALESMR IR ST+SMTSVP PLKFLR HYG
Sbjct: 39 LSEEDLQLKQNLELYVERVQDPNPELQKIALESMRKEIRDSTSSMTSVPKPLKFLRPHYG 98
Query: 86 ALKEACEKMTDQKPKKLLCSIISVLAMSQD-NVEQECLKYCLMAKQKDVGDWGHEYVRQL 144
LKE KM + KK+L I+SVLA++ E+E L Y L + D+G WGHEYVR L
Sbjct: 99 VLKEFHAKMAESDLKKMLADILSVLALTMSAEGERESLNYRLNGSESDIGSWGHEYVRNL 158
Query: 145 EAEIAEEWATNKYEKPQ---LLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDV 201
EIA+E+ + E+ L++L++ I+ F MKHNAE +A DLLM+++ L+LL +H+D
Sbjct: 159 AGEIAKEYTIRQGEESSIEDLMDLVQQIVSFHMKHNAETEAVDLLMDVEDLDLLLEHVDN 218
Query: 202 TNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQ 261
TN+ R C YL++ A Y+ P+ ++ + Y+KF EYP AL +AL L++ V ++F
Sbjct: 219 TNFRRTCNYLTSAAKYLPGPDDMLVLDIAYMIYIKFAEYPNALQIALFLDNMQYVKQVFT 278
Query: 262 LCEDPVVRKQLAYMAGRQQITIELPDEM----PDKNDLQIIMTNSHINDHFHSLARELDI 317
C D V +KQ YM R +T EL EM DK LQ I+ NS +++ + +LAR++++
Sbjct: 279 SCTDLVKKKQFCYMIARHGMTFELDQEMVANDEDKEALQDIVNNSKLSEGYLTLARDIEV 338
Query: 318 MEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVED- 376
ME KTPE++YK L L + VDSAR NL++TFVNAFVNAGF +DKL++V
Sbjct: 339 MEAKTPEDIYKAHL----LDGRASSGPSVDSARQNLSATFVNAFVNAGFGQDKLMTVPSD 394
Query: 377 -----GNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALG 431
W++KNK+HG SA ASLG+I LWDV+ GL +DKY +++++ + AGALL +G
Sbjct: 395 STSGSAGNWLFKNKEHGKTSAVASLGMIQLWDVETGLGHLDKYFHSNDNPVVAGALLGVG 454
Query: 432 IVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRK 491
IVNCG++N+CDPA ALLS Y+ N+ ++RIGA++GLG+AYAG++ ++ L P+L D
Sbjct: 455 IVNCGIKNDCDPAFALLSGYIDNEDSSVRIGAIMGLGIAYAGSQNDQIKIRLSPILNDAN 514
Query: 492 STPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLG 551
+ +V+AFAA++ +IYVG+ EVA +I+ L++ +EL + +RFLPL L + YLG
Sbjct: 515 APLDVIAFAALSLGMIYVGSCNEEVAQSIIFALMDRSEAELGEA-LTRFLPLGLGLLYLG 573
Query: 552 KKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAK 611
K+++++ T + + R M L CAYAG+G+VL VQ+ L C EH
Sbjct: 574 KQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQDLLAQCGEHLVK------ 627
Query: 612 EETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEE 671
G P A +G+A+VA+ EE
Sbjct: 628 ---------------GDIHQGP-------------------------AVIGLAMVAMSEE 647
Query: 672 IGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNA 731
+G +M R ++ +YGE +RRAVPLA+ L +SNP + V+D L++ SHD D EVA A
Sbjct: 648 LGLDMEIRSLERVLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSRLSHDTDSEVAMAA 707
Query: 732 IFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDR 791
I S+GL+GAGTNNAR+A MLR L+ Y+ K+ LF VRIAQG HMGKG ++L+PFH++R
Sbjct: 708 IISLGLIGAGTNNARIAGMLRNLSSYYYKDASLLFCVRIAQGFVHMGKGLLTLNPFHSER 767
Query: 792 QILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVR 851
+L+P ALAG++ +L + LD K+IILGK HY+LY LV AM PR ++T+D++ +P+SV VR
Sbjct: 768 LLLSPTALAGIVTLLHACLDMKSIILGKYHYVLYFLVLAMQPRMMLTVDQSLKPISVPVR 827
Query: 852 VGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGFVILRK 908
VGQAVDV+G+AG PKTI G TH+TPVLLA GERAELAT+ Y+PL+P++EGFVIL++
Sbjct: 828 VGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGERAELATEKYIPLSPILEGFVILKE 884
>sp|Q7S8R8|RPN1_NEUCR 26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=rpn-1 PE=3 SV=2
Length = 902
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/906 (44%), Positives = 579/906 (63%), Gaps = 61/906 (6%)
Query: 16 KGKGEKN-PDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVP 74
K + E+N +E+SEED++L+ +L MLVE++ SD LY PALE+M++ I+TST+SMT+VP
Sbjct: 37 KKEEEQNASEELSEEDQQLKSELEMLVERLTESDATLYKPALEAMKNSIKTSTSSMTAVP 96
Query: 75 MPLKFLRNHYGALKEACEKMTDQKP----KKLLCSIISVLAMS-QDNVEQECLKYCLMAK 129
PLKFLR HY E K+ D+ P K L ++SV+ M+ D Q+ LKY L++
Sbjct: 97 KPLKFLRPHY----ETMTKLYDEWPAGDDKSSLADVLSVIGMTYSDEDRQDTLKYRLLSP 152
Query: 130 QKDVGDWGHEYVRQLEAEIAEEWA---TNKYEKPQLLELIEDIIQFDMKHNAEIQACDLL 186
+D+G WGHEYVR L EI E +A N +L++L ++ +K NAE A DL+
Sbjct: 153 TQDIGSWGHEYVRHLALEIGEVYAKRIANDEPTQELVDLALVLVPLFLKSNAEADAVDLM 212
Query: 187 MEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTL 246
E++ +E L K +D Y RVCLY+ + + P+ + Y K+ ++ +A+ L
Sbjct: 213 SELEIIEELPKFLDENTYSRVCLYMVSMVNLLTYPDNETFLRVAHSIYKKYNQHTQAMVL 272
Query: 247 ALQLNDEPSVLKIFQLC-EDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHIN 305
A++LND + K F+ EDP +RKQLA++ RQ I +E D + ++N ++
Sbjct: 273 AIRLNDLGLIEKDFEAADEDPALRKQLAFLIARQGIPLEFERSNDDDEKIYECLSNQKLS 332
Query: 306 DHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAG 365
++F SL +EL+I+EPKT E++YK+ LE+ + N D SARHNLA+ FVNAFVNAG
Sbjct: 333 EYFKSLGKELNILEPKTTEDIYKSHLESSRVAGMTNFD----SARHNLAAGFVNAFVNAG 388
Query: 366 FSRDKLVSV-EDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKA 424
F DK++ V +D + W++K K GM+S ASLG + LWDV+ GL +DKY Y E+ I+A
Sbjct: 389 FGSDKMMLVGKDKDSWVWKTKDEGMMSTVASLGTLLLWDVENGLDHVDKYTYLEEEQIQA 448
Query: 425 GALLALGIVNCGVRNECDPALALLS--DYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTL 482
GA LA+GI+N VR + +PA+ALL+ D + + + +R+ ++GLGLAYAG+ ++E+++
Sbjct: 449 GAYLAIGIMNTNVRTDSEPAMALLADPDKLAHKNPLIRVATIMGLGLAYAGSCKEELLSF 508
Query: 483 LLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLP 542
L+ +++D + + +V A AA+A +I+VG+ EV+ AI+ TL++ + +SRFL
Sbjct: 509 LVNIISDPEESMQVSAMAALACGMIFVGSSNSEVSEAIVTTLLDEESGSRLNDKWSRFLA 568
Query: 543 LALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEH 602
L L + Y G+++ +D L L+ + P ++ ++CA+AG+G VL +QE LH+C+EH
Sbjct: 569 LGLGLLYFGRQEQVDVILETLKAVEHPMAKPTAVLAEICAWAGTGAVLKIQELLHICNEH 628
Query: 603 YTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALG 662
EE +QA A LG
Sbjct: 629 IEDGEEKKGEEL----------------------------------------LQAYAVLG 648
Query: 663 VAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHD 722
+ ++A+GE++G EM R FG L YGE +RRAVPLA+ L S SNP + V D L++YSHD
Sbjct: 649 IGLIAMGEDVGQEMVLRHFGHLMHYGEANIRRAVPLAMGLISPSNPQMKVYDTLSRYSHD 708
Query: 723 LDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTV 782
D EVA NAIF+MGL+GAGTNNARLA +LRQLA Y+ ++ LFMVRIAQGL HMGKGT+
Sbjct: 709 NDNEVAINAIFAMGLLGAGTNNARLAQLLRQLASYYHRDQESLFMVRIAQGLLHMGKGTL 768
Query: 783 SLSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDEN 842
S+SPFHTDRQ+L+ VA AGLL VL + +D K I KSHYLLY +V AM+PR LVTLDE+
Sbjct: 769 SVSPFHTDRQVLSNVATAGLLAVLVAMIDAKQFITSKSHYLLYWIVTAMHPRMLVTLDED 828
Query: 843 QEPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEG 902
+P++V+VRVGQAVDV+G+AG PKTI G T +TPVLL GERAEL D Y+ L+ +EG
Sbjct: 829 LKPLTVNVRVGQAVDVVGQAGRPKTITGWQTQSTPVLLGYGERAELEDDQYISLSSTLEG 888
Query: 903 FVILRK 908
VILRK
Sbjct: 889 LVILRK 894
>sp|P87048|RPN1_SCHPO 26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn1 PE=1 SV=2
Length = 891
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/909 (44%), Positives = 586/909 (64%), Gaps = 57/909 (6%)
Query: 10 KDEKVTKGKGEKNP-DEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTT 68
D T E++ +++SEED +L+ DL +LV+ ++ + L +L ++++IRTST+
Sbjct: 29 NDRNSTNNTKERDELEDLSEEDLQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTSTS 88
Query: 69 SMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNV-EQECLKYCLM 127
SMT+VP PLKFLR HY L + + K L I+SVL MS N + E LKY L
Sbjct: 89 SMTAVPKPLKFLRPHYFTLVKIYDSWPQSPQKTQLADILSVLGMSYSNTSKHESLKYRLQ 148
Query: 128 AKQKDVGDWGHEYVRQLEAEIAEEWATNKYEKP---QLLELIEDIIQFDMKHNAEIQACD 184
D WGHEYVR L +EI EE+A+ + E+ L+EL I+ F + HNAE A D
Sbjct: 149 GVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDLMELALTIVPFFLTHNAEADAID 208
Query: 185 LLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRAL 244
LL E+ +E + +++ N RVCLY+++C + PE + Y KF + +AL
Sbjct: 209 LLQELGAIEKVVPFVELDNASRVCLYITSCVNLLPFPEDVAMLRTAHAIYRKFDQLTQAL 268
Query: 245 TLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHI 304
+A++L+D + + + DP+++KQ++YM RQQI +++ DE +L + N+H+
Sbjct: 269 NVAIRLDDMSLIKEDCEAATDPLLKKQMSYMLARQQIPMDMGDE-----ELNDALNNTHL 323
Query: 305 NDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNA 364
+DHFH L +EL++M+PK PE+++KT LE V R V SA+ NLA+TFVNA VNA
Sbjct: 324 SDHFHYLGKELNLMDPKVPEDIFKTHLE--VARTGLGAS-GVYSAKQNLANTFVNALVNA 380
Query: 365 GFSRDKLVSVED-GNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIK 423
G+S D+L+ V+D W+YKNK+ G++SA AS+GL+ LW+VD GL+ +DKYLY+SE+ K
Sbjct: 381 GYSNDRLILVDDEKTSWIYKNKESGLISATASIGLLQLWNVDMGLSLLDKYLYSSEENTK 440
Query: 424 AGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLL 483
AGALL +G+ N VRNE DPA+A+LS+Y+ S+ LR A+LGLGLAY+G R++++ +L
Sbjct: 441 AGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGLGLAYSGANREDLLDML 500
Query: 484 LPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPL 543
P++TD ++ AA++ LI+VGT +VAS ILQTL+E S Q+ + RF+ L
Sbjct: 501 SPIVTDTDCPMQLSCLAALSLGLIFVGTCNGDVASTILQTLMEREESA-QNDQWGRFMAL 559
Query: 544 ALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHY 603
LA+ + GK+D D T+ L+ + A++++ +C+YAG+G+VL +Q+ LH+CSE
Sbjct: 560 GLALLFNGKQDLADATVETLKAIEGKIARQAEILVDICSYAGTGNVLHIQKLLHICSE-- 617
Query: 604 TPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGV 663
P + AKE +E+T +Q AALGV
Sbjct: 618 -PPSDDAKE----------------SETT----------------------IQTFAALGV 638
Query: 664 AVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDL 723
A +A+GE+IG+EM R F + YGEP++R+A+PLA+ L S SNP + + D L++YSHD
Sbjct: 639 ATIAMGEDIGAEMVLRHFDHMMHYGEPSIRKAIPLALGLLSASNPQMRIFDTLSRYSHDN 698
Query: 724 DEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVS 783
D +VA+NAIF+MGLVGAGT+NARLA +LRQLA Y+ K + LFMVRIAQGL ++GKGT++
Sbjct: 699 DLDVAYNAIFAMGLVGAGTSNARLAQLLRQLASYYHKESNALFMVRIAQGLLYLGKGTMT 758
Query: 784 LSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQ 843
L+P+HT+RQIL A AGL+ V+ + LD +L SH+LLY + A+ PR L+TL E+
Sbjct: 759 LNPYHTERQILGQTAFAGLMTVVLAMLDANTFVLDTSHWLLYAITLAIRPRMLITLGEDG 818
Query: 844 EPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGF 903
+ + VSVRVGQAVDV+G+AG PK I G THTTPVLL ERAELAT+ Y PLT +EG
Sbjct: 819 QYLPVSVRVGQAVDVVGQAGRPKVITGWVTHTTPVLLHHNERAELATEAYTPLTS-LEGI 877
Query: 904 VILRKKDKD 912
VIL+K +D
Sbjct: 878 VILKKNTED 886
>sp|Q54BC6|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium
discoideum GN=psmD2 PE=1 SV=1
Length = 893
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/886 (43%), Positives = 578/886 (65%), Gaps = 67/886 (7%)
Query: 26 MSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYG 85
+S ED++L+ DL +LVE+ + + + L ALE+++ IR+ST+SMTSVP PLKFLRNHY
Sbjct: 55 LSPEDEKLKNDLELLVERSRDEKEEIALAALEALKTEIRSSTSSMTSVPKPLKFLRNHYS 114
Query: 86 ALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLE 145
L + + + K K L I+SVLAM+ N E++ LKY L+ + + WGHEYV+ L
Sbjct: 115 TLVDIYKNSKEGKAKTSLADILSVLAMANGNDERDTLKYKLLGSGEAIASWGHEYVKHLA 174
Query: 146 AEIAEEWATNKYEKPQ---LLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVT 202
EI E+ K E LL+L+++I+ F M HNAE +ACDLL+E++ L + +++D
Sbjct: 175 TEIGVEYDIKKEENQSVEDLLKLVDEIVPFQMTHNAEPEACDLLLEVEQLSKIFQYIDEN 234
Query: 203 NYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQL 262
NY RVCLYL C+ YV P+ I + Y+K K+YP AL +A++++D + +IF+L
Sbjct: 235 NYSRVCLYLFKCSYYVPGPDDINILKVCVEIYIKMKQYPDALRVAMKISDPELITEIFKL 294
Query: 263 CED-PVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPK 321
E+ + +QL ++ RQ+I +PD + + + I+ NS ++++F +LA +LDI EPK
Sbjct: 295 VENNKSILQQLGFLVARQKI---VPDNF-NYDSISDIINNSKLSEYFMNLATDLDIREPK 350
Query: 322 TPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWM 381
PEE++++ L++ DSAR NLAS+FVNAFVNAGF +DKL++ E+ KW
Sbjct: 351 LPEEIFQSHLDST--------SAIADSARMNLASSFVNAFVNAGFGKDKLMTAEEDTKWW 402
Query: 382 YKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNEC 441
+KN++ G+LS AS G++ LWD+DGGLT IDK+LY+ E + GAL+A+G++ G+R+E
Sbjct: 403 FKNRELGILSTVASTGMVVLWDIDGGLTKIDKFLYSQEKHCSNGALMAIGMLTSGIRSEM 462
Query: 442 DPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAA 501
DPAL+LL++++ + + RI A+ GLGLAYAGT+RQ++++LL P L D K E +
Sbjct: 463 DPALSLLAEHINSSNTGTRISAIFGLGLAYAGTQRQDLMSLLSPCLDDDKEKMEFIGIVG 522
Query: 502 VAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLA 561
+A LI++G+ E+++ +QTLI+ + + ++RFL L L + YLGK+DA + L
Sbjct: 523 LALGLIFIGSCDPELSTLFVQTLIQRGTAASES--HARFLHLGLGLLYLGKQDAAELALE 580
Query: 562 ALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAA 621
L+ + A++ ++ CAYAG+G+VL VQ LH CS
Sbjct: 581 TLKAIEGKGGEYARLTVEACAYAGTGNVLKVQNMLHFCS--------------------- 619
Query: 622 SATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIF 681
D +E + +A L +A++A+GEE+GS+M R+F
Sbjct: 620 -----------------DGQE----------NPHHGLAVLSIALIAMGEELGSDMCLRMF 652
Query: 682 GQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAG 741
L + G ++RA+PLA+ L S SNP + ++D+L+K SHD D EVA AI S+GL+GAG
Sbjct: 653 DHLLQKGNVHIKRAIPLALGLLSPSNPRIAIMDILSKLSHDNDPEVAQGAILSLGLIGAG 712
Query: 742 TNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAG 801
TNNAR+ MLR LA ++ K+ HLF VRIAQGL H+GKGT++++P+H+DR +++PVA+ G
Sbjct: 713 TNNARIGGMLRALAVFYGKDV-HLFFVRIAQGLLHLGKGTMTINPYHSDRTLMSPVAVGG 771
Query: 802 LLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVRVGQAVDVIGK 861
LL +L + LD KNI+ +SHYL + +V +MYPR L+TLDE+ +P+ VSVRVGQ+VD++G
Sbjct: 772 LLALLHAGLDIKNILSTQSHYLFFSIVCSMYPRMLMTLDEDLKPLPVSVRVGQSVDIVGL 831
Query: 862 AGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGFVILR 907
AG PKTI G THTTPVLL ERAELATDDY+PLT ++EG VIL+
Sbjct: 832 AGKPKTITGFQTHTTPVLLGYNERAELATDDYIPLTNILEGIVILK 877
>sp|P38764|RPN1_YEAST 26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN1 PE=1 SV=3
Length = 993
Score = 626 bits (1614), Expect = e-178, Method: Compositional matrix adjust.
Identities = 365/961 (37%), Positives = 533/961 (55%), Gaps = 99/961 (10%)
Query: 30 DKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKE 89
D +L+ DL +LVE++K D LY +L ++++ I+ ST+SMT+VP PLKFLR Y L
Sbjct: 42 DAKLKTDLELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDLCS 101
Query: 90 ACEKMTDQKPKKLLCSIISVLAMS-QDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEI 148
+K TD K L ++S+LAM+ +N + + L+Y L++ D WGHEY+R L EI
Sbjct: 102 IYDKWTDPNLKSSLADVLSILAMTYSENGKHDSLRYRLLSDVSDFEGWGHEYIRHLALEI 161
Query: 149 AEEW-----------------------ATNKYE--KPQLLELIEDIIQFDMKHNAEIQAC 183
E + AT+ +E K L L DI+ + +KHN E A
Sbjct: 162 GEVYNDQVEKDAEDETSSDGSKSDGSAATSGFEFSKEDTLRLCLDIVPYFLKHNGEEDAV 221
Query: 184 DLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRA 243
DLL+EI+ ++ L + +D + RVC Y+ C + PE + YL E A
Sbjct: 222 DLLLEIESIDKLPQFVDENTFQRVCQYMVACVPLLPPPEDVAFLKTAYSIYLSQNELTDA 281
Query: 244 LTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSH 303
+ LA++L +E + +F DPV+ KQLAY+ Q+ + E +Q I+ N
Sbjct: 282 IALAVRLGEEDMIRSVFDATSDPVMHKQLAYILAAQKTSFEY-------EGVQDIIGNGK 334
Query: 304 INDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVN 363
+++HF LA+EL++ PK PE++YK+ L+N + +DSA+ NLAS+FVN F+N
Sbjct: 335 LSEHFLYLAKELNLTGPKVPEDIYKSHLDN---SKSVFSSAGLDSAQQNLASSFVNGFLN 391
Query: 364 AGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIK 423
G+ DKL+ D + W+YK K GM SA AS+G IY W++D GL +DKYLY E +K
Sbjct: 392 LGYCNDKLIV--DNDNWVYKTKGDGMTSAVASIGSIYQWNLD-GLQQLDKYLYVDEPEVK 448
Query: 424 AGALLALGIVNCGVRN-ECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTL 482
AGALL +GI GV + E +PAL LL DYV N + A+LGLG+A+AG+K EV+ L
Sbjct: 449 AGALLGIGISASGVHDGEVEPALLLLQDYVTNPDTKISSAAILGLGIAFAGSKNDEVLGL 508
Query: 483 LLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLP 542
LLP+ E A A++A + ++VGT ++ ++I+ +E EL+ + RFL
Sbjct: 509 LLPIAASTDLPIETAAMASLALAHVFVGTCNGDITTSIMDNFLERTAIELKT-DWVRFLA 567
Query: 543 LALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLH----- 597
LAL I Y+G+ + +D L + + P S ++++ CAY G+GDVL++Q+ LH
Sbjct: 568 LALGILYMGQGEQVDDVLETISAIEHPMTSAIEVLVGSCAYTGTGDVLLIQDLLHRLTPK 627
Query: 598 ------------------------VCSEHYTPTTSSAKE------ETSATGTAASATA-- 625
+ + PT + E E A G A
Sbjct: 628 NVKGEEDADEEETAEGQTNSISDFLGEQVNEPTKNEEAEIEVDEMEVDAEGEEVEVKAEI 687
Query: 626 -----GGSTESTPAAAANDKKEKKDKEKEKD-------------LSSMQAVAALGVAVVA 667
G S E + K + DK+ D + A A LG+A++A
Sbjct: 688 TEKKNGESLEGEEIKSEEKKGKSSDKDATTDGKNDDEEEEKEAGIVDELAYAVLGIALIA 747
Query: 668 LGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEV 727
LGE+IG EMS R FG L YG +RR VPLA+ + S+S+P + V D L ++SHD D EV
Sbjct: 748 LGEDIGKEMSLRHFGHLMHYGNEHIRRMVPLAMGIVSVSDPQMKVFDTLTRFSHDADLEV 807
Query: 728 AHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPF 787
+ N+IF+MGL GAGTNNARLA +LRQLA Y+ + LF+ R+AQGL H+GKGT+++ F
Sbjct: 808 SMNSIFAMGLCGAGTNNARLAQLLRQLASYYSREQDALFITRLAQGLLHLGKGTMTMDVF 867
Query: 788 HTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVS 847
+ D +LN V LA +L + ++ K H L Y L + P++++ L++ EP+
Sbjct: 868 N-DAHVLNKVTLASILTTAVGLVSPSFML--KHHQLFYMLNAGIRPKFILALNDEGEPIK 924
Query: 848 VSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGFVILR 907
V+VRVGQAV+ +G+AG PK I G T +TPVLL GERAEL TD+Y+ T +EG VIL+
Sbjct: 925 VNVRVGQAVETVGQAGRPKKITGWITQSTPVLLNHGERAELETDEYISYTSHIEGVVILK 984
Query: 908 K 908
K
Sbjct: 985 K 985
>sp|Q6FPV6|RPN1_CANGA 26S proteasome regulatory subunit RPN1 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN1 PE=3 SV=1
Length = 983
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 232/621 (37%), Positives = 369/621 (59%), Gaps = 39/621 (6%)
Query: 2 PEKIAVPDKDEKVTKGKGEKNPDEMSEE-DKRLQEDLNMLVEKIKGSDKHLYLPALESMR 60
PE + KDE K K + N +E E D++L+ DL MLV+ + D LY L ++
Sbjct: 13 PETEDLTVKDETKNKDKKKANEEEELSEEDQKLKGDLEMLVQTLLEDDSKLYETTLTQLK 72
Query: 61 DLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMS-QDNVEQ 119
+ I+ ST+SMT+VP PLKFLR Y L +A +K +D+ K L ++SVLAM+ D +
Sbjct: 73 EFIKNSTSSMTAVPKPLKFLRPFYPDLCKAYDKWSDKDQKSSLADMLSVLAMTYSDTHQH 132
Query: 120 ECLKYCLMAKQKDVGDWGHEYVRQLEAEI-----------AEEWATNKYEKPQ------- 161
+ L++ L++ ++ WGHEYVR L EI AE+ +T+ PQ
Sbjct: 133 DSLRFRLLSDTSNIASWGHEYVRHLALEIGEVYNEQVEKEAEDNSTSTESSPQPPHMNFE 192
Query: 162 -----LLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCAL 216
+L+L +I+ + MKHN E A DLL+EI+ +E L + +D Y RVC Y+ C
Sbjct: 193 FSKDVILQLSLEIVPYFMKHNGEEDAVDLLLEIEAIEKLPQFVDENTYKRVCQYMIACVQ 252
Query: 217 YVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMA 276
+ PE + YL + P AL+LA++L +E + +F DP+V +QLAY+
Sbjct: 253 LLPPPEDISFLQTAYSIYLSELQLPEALSLAIRLGNEDMIRSVFDATSDPIVHQQLAYIL 312
Query: 277 GRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKTWLENIVL 336
Q++ E P+ LQ I+ N+ +++HF LA+EL+++ PK PE++YK+ L++
Sbjct: 313 AAQRVPFEHPE-------LQEIIGNTKLSEHFLYLAKELNLLTPKIPEDIYKSHLDS--- 362
Query: 337 RPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASL 396
+ +DSA+ NLA++FVNAF+N G+ DK+++ D + W+YK K GM SA AS+
Sbjct: 363 SKSVFSSAGLDSAQQNLAASFVNAFLNLGYCNDKMIT--DNDNWVYKTKGDGMTSAVASI 420
Query: 397 GLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDS 456
G IY W++DG L +DKYLY E +KAG LL +GI + GV ++ +PAL LL +Y+ +
Sbjct: 421 GSIYQWNIDG-LQQLDKYLYVDEPEVKAGGLLGIGIASAGVHHDVEPALLLLQEYINHSD 479
Query: 457 ITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEV 516
+ A+LG+G+A+AG+K EV+ LLLPV+++ +++ E+ A AA+A S ++VGT ++
Sbjct: 480 TKISTAAILGIGIAFAGSKNDEVLGLLLPVVSNTENSLELAAIAALALSHVFVGTCNGDI 539
Query: 517 ASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKM 576
+A++ +E EL+ ++RFL L+L + YLG+ + +D L + + P S ++
Sbjct: 540 TTAVMDNFLERTPLELK-SEWARFLALSLGLLYLGQGEHVDDVLETINAIEHPMTSAIEV 598
Query: 577 MLKMCAYAGSGDVLVVQEFLH 597
++ CAY +GDVL+VQ+ LH
Sbjct: 599 LISSCAYTATGDVLLVQDLLH 619
Score = 258 bits (660), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/252 (50%), Positives = 173/252 (68%), Gaps = 3/252 (1%)
Query: 657 AVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVL 716
A A +G+A++ +GEEIG EMS R FG L YG +RR VPLA+ L S+++P + V D L
Sbjct: 727 AYAVIGIALITMGEEIGKEMSLRHFGHLMHYGNEHIRRMVPLAMGLVSVADPQMKVFDTL 786
Query: 717 NKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTH 776
++SHD D +V+ N+IF+MGL G GTNNARLA +LRQLA Y+ + LF+ R+AQGL H
Sbjct: 787 TRFSHDPDLDVSMNSIFAMGLCGVGTNNARLAQLLRQLASYYSREQDALFITRLAQGLVH 846
Query: 777 MGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWL 836
+GKGT+++ F+ D +LN V LA LL VL + I+ K H L Y L + P+++
Sbjct: 847 LGKGTMTMDIFN-DAHVLNKVTLASLLTVLVGLISPSFIL--KHHQLFYMLNSGVRPKFI 903
Query: 837 VTLDENQEPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPL 896
+TL+E E + V+VR+GQAV+ +G+AG PKTI G T +TPVLL GERAEL D+Y+
Sbjct: 904 ITLNEEGEQIKVNVRIGQAVETVGQAGKPKTITGWITQSTPVLLGHGERAELENDEYISY 963
Query: 897 TPVMEGFVILRK 908
T +EG VIL+K
Sbjct: 964 TNNIEGVVILKK 975
>sp|Q8SS65|RPN1_ENCCU 26S proteasome regulatory subunit RPN1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN1 PE=1 SV=1
Length = 795
Score = 263 bits (671), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 234/884 (26%), Positives = 421/884 (47%), Gaps = 105/884 (11%)
Query: 36 DLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMT 95
+L ++VE+I+ D + AL + D+ ++S + + ++L ++ L++ C+++
Sbjct: 5 ELKIIVERIQDPDIDIQNNALNMLFDVTKSSHSKSIDT-INFQYLADNLDVLEDVCKRLE 63
Query: 96 DQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATN 155
K K+ LC IIS + + D E++ L Y + D+ +WGH YV++L IA+ N
Sbjct: 64 GNK-KRWLCDIISAICVVDD--ERKLLAYRVEGNIIDLKEWGHLYVKKLIGCIAD-VKNN 119
Query: 156 KYEKP--QLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSN 213
K + P + ++ + I F KHNAE +A D L+E+ +E + ++D NY R+ LYL +
Sbjct: 120 KMDFPFAKTRDVGRECIDFLFKHNAEFEAIDFLVEVGGIETVLDYVDTHNYNRIVLYLED 179
Query: 214 CALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLA 273
+V+ E +L YLK ++ R + ++ ++ + ED +KQ
Sbjct: 180 MNSFVDLEEV------ILKIYLKMGDHSRYVVGLIRRQKSKEAIEYVRSIEDRDYKKQCL 233
Query: 274 YMAGRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKTWLEN 333
Y+ R + E D P++ + I++N +I D + + EL+I +P + + K +
Sbjct: 234 YILARCNLYYEASD--PEE---KYILSNGYIKDVYREIGAELEIDKPSKMDAILKGF--- 285
Query: 334 IVLRPTYNLDVPVDSARHNLASTFV-NAFVNAGFSRDKLVSVEDGNKWMYKNKQH----- 387
D LAS + N FV+ G+ RD + ++G+ + + +
Sbjct: 286 -----------KYDKDTRQLASIGIANGFVHMGYGRDPIFLPQEGDSRVPLDYEAILGCD 334
Query: 388 --GMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPAL 445
++S S+G+I W+ + + + ++++ Y K G+LL L + E L
Sbjct: 335 VPDLISVFGSIGVIESWNSEKVMETLQEHIFADFSYRKTGSLLGLALSGLRNFEERPAIL 394
Query: 446 ALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAAS 505
ALLS+ + + S I +LG+ ++GT+ +EV LL P++ S EVV F +
Sbjct: 395 ALLSNNLQSSSSIHVIATLLGIEAMFSGTQAEEVRELLQPLMFSDSS--EVVFFTSFTLG 452
Query: 506 LIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEV 565
++ G+ ++ S +LQT +E + + + RFL L LA + +KD +E+
Sbjct: 453 SVFCGSADEDLTSLMLQTFVE--KGKESETQFFRFLMLGLASLFYRRKDV---ECGIMEI 507
Query: 566 LPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATA 625
+++K Y G+GD V++ L T S +T A
Sbjct: 508 -GGALSKHESILIKGFQYVGTGDSNVIESIL----------TDSFTGDTDAL-------- 548
Query: 626 GGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLG 685
++++ L A+V++G+E S+M RI
Sbjct: 549 -----------------------------LESLGLLSCALVSMGDETSSQMVGRIVSSSL 579
Query: 686 RYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNA 745
+R +PL ++ SNP +NV+D+L K + + + I S+GL+GAGT N+
Sbjct: 580 LLDSSHLRSVLPLCYSILYPSNPQVNVLDMLEKSLNIGETNCIISTIVSLGLIGAGTLNS 639
Query: 746 RLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAGLLVV 805
R+ +L Q Y+ K++ L +++IAQGL +GKG +S+SP + D+ P GL
Sbjct: 640 RITKILDQQYSYYYKDSKVLPVLKIAQGLVSLGKGLLSISPLYFDKTTFMPKNTIGLFST 699
Query: 806 LTSFLDTKNIILGKSH-YLLYCLVPAMYPRWLVTLDENQEPVSVSVRVGQAVDVIGKAGT 864
+ LD+ L SH Y+ + L A ++ VT E +++RVG ++ +G G
Sbjct: 700 VFMLLDSSISPLVSSHAYMFFLLCQACTQKY-VTCSEK-----INIRVGHPINTVGMVGE 753
Query: 865 PKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGFVILRK 908
PK ++ V THT+PV+L+ RAE TD+ V + +E +IL+K
Sbjct: 754 PKKLSSVQTHTSPVVLSEKIRAE--TDENV-CSSYIEDVLILKK 794
>sp|Q75CF3|RPN2_ASHGO 26S proteasome regulatory subunit RPN2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPN2 PE=3 SV=1
Length = 930
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 117/258 (45%), Gaps = 25/258 (9%)
Query: 354 ASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDK 413
A + NAF++AG + D V +W+ K + +A ASLG+I+ ++ GG ++
Sbjct: 323 AVSVSNAFMHAGTTDDTFVRA--NLQWLGKAQNWAKFTATASLGIIHQGNLTGGKKIMEP 380
Query: 414 YL---YTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSIT--------LRIG 462
YL S YIK G+L LG++ G E + L D ++ +S L G
Sbjct: 381 YLPGSRASSRYIKGGSLYGLGLIYAGYGKEI---IGYLKDQIVENSSNATDDDVDVLLHG 437
Query: 463 AVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQ 522
A LG+GLA + E+ L VL + A AA+ L +G+G VA +
Sbjct: 438 ASLGIGLAGMSSNSTEIFEALKEVL--YADSANSGAAAALGIGLTMLGSGDETVAENLYT 495
Query: 523 TLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAA-LEVLPDPFRSMAKMMLKMC 581
E G ++ L +ALA+ G+++ D T+ LE D R A + +
Sbjct: 496 Y-----AQETSHGEITKGLAIALALLNYGREELADETIKKMLEHENDSMRYGAVYTIAL- 549
Query: 582 AYAGSGDVLVVQEFLHVC 599
AYAG+ V++ LHV
Sbjct: 550 AYAGTSSNEAVKKLLHVA 567
>sp|Q54JM5|PSMD1_DICDI 26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium
discoideum GN=psmD1 PE=1 SV=1
Length = 975
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 113/253 (44%), Gaps = 28/253 (11%)
Query: 357 FVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYL- 415
F NA ++AG +RD + +W+YK+ SA +SLG+I + + + YL
Sbjct: 361 FANALMHAGTTRDTFL--RSNIEWLYKSTHWTKFSAISSLGVINKGHIKESKSLLKTYLP 418
Query: 416 ---YTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYV-----LNDSITLRIGAVLGL 467
Y ++G+L ALG+++ E + DY+ +N++I L GA LGL
Sbjct: 419 GASVNQTPYSESGSLYALGLIHASHGEE-------IIDYLVEKLHINNAI-LHHGASLGL 470
Query: 468 GLAYAGTKRQEVVTLLLPVL-TDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIE 526
GLA T R ++ L VL D + E A +A L+ +G+G + +L
Sbjct: 471 GLAAMATGRDDLYEDLKSVLYNDDAVSGEA---AGLAMGLVMLGSGAKKAIEEMLAY--- 524
Query: 527 LPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGS 586
E Q R L + LA GK+++ DT + + DP M AY G+
Sbjct: 525 --AHETQHEKTIRSLSMGLAFLMYGKEESADTLIEQMIGDKDPLIRYGGMYAIAFAYCGT 582
Query: 587 GDVLVVQEFLHVC 599
G +++ LHV
Sbjct: 583 GHNDALRKLLHVA 595
Score = 37.7 bits (86), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 420 DYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEV 479
D ++ A+ +G V +C A+ALL++ + + +R GA LG+A AGT +++
Sbjct: 601 DSVRRAAVTCIGFVLSRQPEKCPKAIALLAE---SYNPHVRYGAAFALGIACAGTGQRDA 657
Query: 480 VTLLLPVLTDRKSTPEVVAFAAVAASLI 507
+ +L + TD + A+ ++A LI
Sbjct: 658 LEILKSLTTDSVGYVKQAAWISMAMVLI 685
>sp|Q5F418|PSMD1_CHICK 26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus
GN=PSMD1 PE=2 SV=1
Length = 955
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 116/265 (43%), Gaps = 30/265 (11%)
Query: 347 DSARHNL---ASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWD 403
D+ R+++ A+ N+F++ G + D+ + D +W+ + +A ASLG+I+
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFL--RDNLEWLARATNWAKFTATASLGVIHKGH 415
Query: 404 VDGGLTPIDKYL----YTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLN----- 454
L + YL Y + G L ALG+++ + + DY+LN
Sbjct: 416 EKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGD-------IIDYLLNQLKNA 468
Query: 455 DSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVL-TDRKSTPEVVAFAAVAASLIYVGTGY 513
+ +R G LGLGLA GT RQ+V LL L D T E A +A L+ +G+
Sbjct: 469 SNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEA---AGLALGLVMLGSKN 525
Query: 514 HEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSM 573
+ ++ E Q R L + +A+ G+ + D + +L DP
Sbjct: 526 AQAIEDMVGY-----AQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRR 580
Query: 574 AKMMLKMCAYAGSGDVLVVQEFLHV 598
+ M AY GSG+ ++ LHV
Sbjct: 581 SGMYTVAMAYCGSGNNKAIRRLLHV 605
Score = 36.6 bits (83), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 420 DYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEV 479
D ++ A+ +LG + +C ++LLS+ + + +R GA + LG+ AGT +E
Sbjct: 612 DDVRRAAVESLGFILFRTPEQCPSVVSLLSE---SYNPHVRYGAAMALGICCAGTGNKEA 668
Query: 480 VTLLLPVLTDRKSTPEVVAFAAVAASLIYV 509
+ LL P+ D V A +A++LI +
Sbjct: 669 INLLEPMTND--PVNYVRQGALIASALIMI 696
>sp|Q3TXS7|PSMD1_MOUSE 26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus
GN=Psmd1 PE=1 SV=1
Length = 953
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 116/265 (43%), Gaps = 30/265 (11%)
Query: 347 DSARHNL---ASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWD 403
D+ R+++ A+ N+F++ G + D+ + D +W+ + +A ASLG+I+
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFL--RDNLEWLARATNWAKFTATASLGVIHKGH 415
Query: 404 VDGGLTPIDKYL----YTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLN----- 454
L + YL Y + G L ALG+++ + + DY+LN
Sbjct: 416 EKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGD-------IIDYLLNQLKNA 468
Query: 455 DSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVL-TDRKSTPEVVAFAAVAASLIYVGTGY 513
+ +R G LGLGLA GT RQ+V LL L D T E A +A L+ +G+
Sbjct: 469 SNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEA---AGLALGLVMLGSKN 525
Query: 514 HEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSM 573
+ ++ E Q R L + +A+ G+ + D + +L DP
Sbjct: 526 AQAIEDMVGY-----AQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRR 580
Query: 574 AKMMLKMCAYAGSGDVLVVQEFLHV 598
+ M AY GSG+ ++ LHV
Sbjct: 581 SGMYTVAMAYCGSGNNKAIRRLLHV 605
Score = 36.6 bits (83), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 420 DYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEV 479
D ++ A+ +LG + +C ++LLS+ + + +R GA + LG+ AGT +E
Sbjct: 612 DDVRRAAVESLGFILFRTPEQCPSVVSLLSE---SYNPHVRYGAAMALGICCAGTGNKEA 668
Query: 480 VTLLLPVLTDRKSTPEVVAFAAVAASLIYV 509
+ LL P+ D V A +A++LI +
Sbjct: 669 INLLEPMTND--PVNYVRQGALIASALIMI 696
>sp|Q99460|PSMD1_HUMAN 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens
GN=PSMD1 PE=1 SV=2
Length = 953
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 116/265 (43%), Gaps = 30/265 (11%)
Query: 347 DSARHNL---ASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWD 403
D+ R+++ A+ N+F++ G + D+ + D +W+ + +A ASLG+I+
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFL--RDNLEWLARATNWAKFTATASLGVIHKGH 415
Query: 404 VDGGLTPIDKYL----YTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLN----- 454
L + YL Y + G L ALG+++ + + DY+LN
Sbjct: 416 EKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGD-------IIDYLLNQLKNA 468
Query: 455 DSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVL-TDRKSTPEVVAFAAVAASLIYVGTGY 513
+ +R G LGLGLA GT RQ+V LL L D T E A +A L+ +G+
Sbjct: 469 SNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEA---AGLALGLVMLGSKN 525
Query: 514 HEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSM 573
+ ++ E Q R L + +A+ G+ + D + +L DP
Sbjct: 526 AQAIEDMVGY-----AQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRR 580
Query: 574 AKMMLKMCAYAGSGDVLVVQEFLHV 598
+ M AY GSG+ ++ LHV
Sbjct: 581 SGMYTVAMAYCGSGNNKAIRRLLHV 605
Score = 36.6 bits (83), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 420 DYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEV 479
D ++ A+ +LG + +C ++LLS+ + + +R GA + LG+ AGT +E
Sbjct: 612 DDVRRAAVESLGFILFRTPEQCPSVVSLLSE---SYNPHVRYGAAMALGICCAGTGNKEA 668
Query: 480 VTLLLPVLTDRKSTPEVVAFAAVAASLIYV 509
+ LL P+ D V A +A++LI +
Sbjct: 669 INLLEPMTND--PVNYVRQGALIASALIMI 696
>sp|Q5R5S4|PSMD1_PONAB 26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii
GN=PSMD1 PE=2 SV=1
Length = 953
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 116/265 (43%), Gaps = 30/265 (11%)
Query: 347 DSARHNL---ASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWD 403
D+ R+++ A+ N+F++ G + D+ + D +W+ + +A ASLG+I+
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFL--RDNLEWLARATNWAKFTATASLGVIHKGH 415
Query: 404 VDGGLTPIDKYL----YTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLN----- 454
L + YL Y + G L ALG+++ + + DY+LN
Sbjct: 416 EKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGD-------IIDYLLNQLKNA 468
Query: 455 DSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVL-TDRKSTPEVVAFAAVAASLIYVGTGY 513
+ +R G LGLGLA GT RQ+V LL L D T E A +A L+ +G+
Sbjct: 469 SNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEA---AGLALGLVMLGSKN 525
Query: 514 HEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSM 573
+ ++ E Q R L + +A+ G+ + D + +L DP
Sbjct: 526 AQAIEDMVGY-----AQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRR 580
Query: 574 AKMMLKMCAYAGSGDVLVVQEFLHV 598
+ M AY GSG+ ++ LHV
Sbjct: 581 SGMYTVAMAYCGSGNNKAIRRLLHV 605
Score = 36.6 bits (83), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 420 DYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEV 479
D ++ A+ +LG + +C ++LLS+ + + +R GA + LG+ AGT +E
Sbjct: 612 DDVRRAAVESLGFILFRTPEQCPSVVSLLSE---SYNPHVRYGAAMALGICCAGTGNKEA 668
Query: 480 VTLLLPVLTDRKSTPEVVAFAAVAASLIYV 509
+ LL P+ D V A +A++LI +
Sbjct: 669 INLLEPMTND--PVNYVRQGALIASALIMI 696
>sp|O88761|PSMD1_RAT 26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus
GN=Psmd1 PE=2 SV=1
Length = 953
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 116/265 (43%), Gaps = 30/265 (11%)
Query: 347 DSARHNL---ASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWD 403
D+ R+++ A+ N+F++ G + D+ + D +W+ + +A ASLG+I+
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFL--RDNLEWLARATNWAKFTATASLGVIHKGH 415
Query: 404 VDGGLTPIDKYL----YTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLN----- 454
L + YL Y + G L ALG+++ + + DY+LN
Sbjct: 416 EKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGD-------IIDYLLNQLKNA 468
Query: 455 DSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVL-TDRKSTPEVVAFAAVAASLIYVGTGY 513
+ +R G LGLGLA GT RQ+V LL L D T E A +A L+ +G+
Sbjct: 469 SNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEA---AGLALGLVMLGSKN 525
Query: 514 HEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSM 573
+ ++ E Q R L + +A+ G+ + D + +L DP
Sbjct: 526 TQAIEDMVGY-----AQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRR 580
Query: 574 AKMMLKMCAYAGSGDVLVVQEFLHV 598
+ M AY GSG+ ++ LHV
Sbjct: 581 SGMYTVAMAYCGSGNNKAIRRLLHV 605
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 420 DYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEV 479
D ++ A+ +LG + +C ++LLS+ + + +R GA + LG+ AGT +E
Sbjct: 612 DDVRRAAVESLGFILFRTPEQCPSVVSLLSE---SYNPHVRYGAAMALGVCCAGTGNKEA 668
Query: 480 VTLLLPVLTDRKSTPEVVAFAAVAASLIYV 509
+ LL P+ D V A +A++LI +
Sbjct: 669 INLLEPMTND--PVNYVRQGALIASALIMI 696
>sp|Q6FIP2|RPN2_CANGA 26S proteasome regulatory subunit RPN2 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN2 PE=3 SV=1
Length = 941
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 116/258 (44%), Gaps = 25/258 (9%)
Query: 354 ASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDK 413
A + N +++AG + + + W+ K + SA ASLG+I+ ++ G +
Sbjct: 328 AVSVSNGYMHAGTTDNSFIKAN--LSWLGKAQNWAKFSATASLGVIHKGNLIDGKKVMAP 385
Query: 414 YL---YTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSIT--------LRIG 462
YL +S +IK G+L LG++ G + + L +++ +S T L G
Sbjct: 386 YLPGSRSSSRFIKGGSLYGLGLIYAGFGRDI---VDYLKTHLIENSGTTGDEDVDVLLHG 442
Query: 463 AVLGLGLAYAGTKRQEVVTLLLPVL-TDRKSTPEVVAFAAVAASLIYVGTGYHEVASAIL 521
A LG+GLA GT EV L VL D ++ E AF L +GTG E A L
Sbjct: 443 ASLGVGLAAMGTANNEVYEALKDVLYNDVATSGEAAAF---GIGLTLLGTG-DETAINDL 498
Query: 522 QTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMC 581
T + E G+ +R L +ALA+ G+++ D + + +
Sbjct: 499 FTYAQ----ETSHGNITRGLSMALALINYGRQEQADELIDKMLASENSLIRYGGAFSIAL 554
Query: 582 AYAGSGDVLVVQEFLHVC 599
AY G+G+ VV++ LH+
Sbjct: 555 AYVGTGNNKVVKKLLHLA 572
>sp|P32565|RPN2_YEAST 26S proteasome regulatory subunit RPN2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN2 PE=1 SV=4
Length = 945
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 112/258 (43%), Gaps = 25/258 (9%)
Query: 354 ASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDK 413
A + N F++AG + + + W+ K + +A ASLG+I+ ++ G +
Sbjct: 331 AVSVANGFMHAGTTDNSFIKAN--LPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAP 388
Query: 414 YL---YTSEDYIKAGALLALGIVNCGV-RNECDPALALLSDYVLNDSIT--------LRI 461
YL S +IK G+L LG++ G R+ D L + ++ +S T L
Sbjct: 389 YLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTD----YLKNIIVENSGTSGDEDVDVLLH 444
Query: 462 GAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAIL 521
GA LG+GLA G+ EV L VL + +T A A+ L +GTG E +
Sbjct: 445 GASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAA--ALGMGLCMLGTGKPEAIHDMF 502
Query: 522 QTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMC 581
E Q G+ +R L + LA+ G+++ D + + +
Sbjct: 503 TY-----SQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIAL 557
Query: 582 AYAGSGDVLVVQEFLHVC 599
AYAG+G+ V+ LHV
Sbjct: 558 AYAGTGNNSAVKRLLHVA 575
Score = 33.5 bits (75), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 68/171 (39%), Gaps = 17/171 (9%)
Query: 412 DKYLYTSEDY---IKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLG 468
D + Y+ E I G + L ++N G + D L++ + +D LR G +
Sbjct: 500 DMFTYSQETQHGNITRGLAVGLALINYGRQELADD---LITKMLASDESLLRYGGAFTIA 556
Query: 469 LAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELP 528
LAYAGT V LL V S +V A +A + + + I+Q L
Sbjct: 557 LAYAGTGNNSAVKRLLHVAVS-DSNDDVRRAAVIALGFVLLRD--YTTVPRIVQLL---- 609
Query: 529 VSELQDGHYSRFLPLALAITYLGK--KDAIDTTLAALEVLPDPFRSMAKMM 577
S+ + H AL I GK + AID L L P F A M+
Sbjct: 610 -SKSHNAHVRCGTAFALGIACAGKGLQSAID-VLDPLTKDPVDFVRQAAMI 658
>sp|O74762|RPN2_SCHPO 26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn2 PE=1 SV=1
Length = 965
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 108/262 (41%), Gaps = 25/262 (9%)
Query: 347 DSARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDG 406
+S HN A TF NAF+N G S D D W+ K +A A+LG+I+ +
Sbjct: 344 NSVFHN-AVTFANAFMNFGTSSDSFF--RDNLSWLSKANNWSKFTATAALGVIHRGYYNQ 400
Query: 407 GLTPIDKYLY-----TSEDYIKAGALLALGIVNC----GVRNECDPALALLSDYVLNDSI 457
+ + YL +S Y + GA A+G+++ GV L D ++
Sbjct: 401 AMNILRPYLPEEDAPSSSTYSEGGAFYAMGLIHANHGRGVTEYLREQLKHTEDEIVQ--Y 458
Query: 458 TLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVA 517
L +G L + T + V T+L + A ++ LI +GT +
Sbjct: 459 GLLLGIGLTGMASRDETLYESVKTILF------NDNAVAGSAAGISMGLIMLGTA----S 508
Query: 518 SAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMM 577
SA + +++ E Q R L + +A+ G++ D + L DP A M
Sbjct: 509 SAAIDEMLQY-AHETQHEKIIRGLGIGIALIVYGRQQEADGIIKELNNDLDPTLRYAGMF 567
Query: 578 LKMCAYAGSGDVLVVQEFLHVC 599
AY G+ + +V++ LH+
Sbjct: 568 ATALAYCGTSNSKIVRDVLHIS 589
>sp|Q9V3P6|PSMD1_DROME 26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila
melanogaster GN=Rpn2 PE=1 SV=1
Length = 1020
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 116/256 (45%), Gaps = 27/256 (10%)
Query: 354 ASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDK 413
A+ NAF+++G + D+ + D W+ + L+A ASLG+I+ L +
Sbjct: 383 ATVIANAFMHSGTTSDQFL--RDNLDWLARATNWAKLTATASLGVIHRGHEKDSLALMQS 440
Query: 414 YLYT----SEDYIKAGALLALGIV--NCGVRNECDPALALLSDYVLNDSITLRIGAVLGL 467
YL S Y + GAL ALG++ N G N D L L D N+++ R G LGL
Sbjct: 441 YLPKEAGPSSGYSEGGALYALGLIHANHGA-NIIDYLLQQLKD-AQNENV--RHGGCLGL 496
Query: 468 GLAYAGTKRQEVVTLL-LPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIE 526
GLA GT RQ++ L + D T E A +A ++ +G+ + IE
Sbjct: 497 GLAGMGTHRQDLYEQLKFNLYQDDAVTGEA---AGIAMGMVMLGSKNAQA--------IE 545
Query: 527 LPVSELQDGHYS---RFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAY 583
VS Q+ + R L + +++T + + D + +L DP + M AY
Sbjct: 546 DMVSYAQETQHEKILRGLAVGISLTMFSRLEEADPLVTSLSSDKDPVLRRSGMYTIAMAY 605
Query: 584 AGSGDVLVVQEFLHVC 599
G+G +++ LHV
Sbjct: 606 NGTGSNKAIRKLLHVA 621
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 420 DYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEV 479
D ++ A+ A+G + +C ++LL++ + +R GA + LG+A AGT +E
Sbjct: 627 DDVRRAAVTAIGFILFRSPEQCPSVVSLLAESY---NPHVRYGAAMALGIACAGTGLREA 683
Query: 480 VTLLLPVL 487
+ LL P++
Sbjct: 684 IALLEPMV 691
>sp|Q18115|PSMD1_CAEEL 26S proteasome non-ATPase regulatory subunit 1 OS=Caenorhabditis
elegans GN=rpn-2 PE=3 SV=4
Length = 965
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 19/225 (8%)
Query: 380 WMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSE----DYIKAGALLALGIVNC 435
W+ K +A ASLGLI+ + ++ YL + + GA+LA G+++
Sbjct: 369 WVSKATNWNKFNAVASLGLIHHGQESSAMKVLEPYLPKESVEGFGFKEGGAMLAYGLIH- 427
Query: 436 GVRNECDPALALLSDYVLN-DSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLT-DRKST 493
++ A++ L+ ++ ++ +R GA LG G+A G+ + VL D +
Sbjct: 428 -AKHGDATAMSTLAQWLKTAENEPVRHGACLGFGVAGLGSSSVSNYEKVREVLQRDEAVS 486
Query: 494 PEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLG-K 552
E A +A LI G EV + + Q ++ + Q G + LA G +
Sbjct: 487 GES---AGIAMGLIMAGHLNQEVFNELKQYTVDTQHDKTQRG-----IRTGLACAAFGLQ 538
Query: 553 KDAIDTTLAALEVLPDP-FRSMAKMMLKMCAYAGSGDVLVVQEFL 596
DA A+ +P RS ML M AYAG+G VV+ L
Sbjct: 539 GDAEPYIKEAIGAKSNPMLRSTGICMLSM-AYAGTGSPDVVRRLL 582
Score = 37.0 bits (84), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 422 IKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVT 481
+K A + +G V + C +A+L+++ N + R GA + LG+A AGT E +
Sbjct: 593 VKRYATIGIGFVLSKDPSTCLSYVAMLTEH-FNGHV--RYGAAMALGIACAGTGNMEAIA 649
Query: 482 LLLPVLTDRK 491
L+ P+++D++
Sbjct: 650 LIEPMISDKE 659
>sp|Q8SSH5|RPN2_ENCCU 26S proteasome regulatory subunit RPN2 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN2 PE=1 SV=1
Length = 786
Score = 42.0 bits (97), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 359 NAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTS 418
N+ +N G S D L + ++ + S AS+G+I+L++ + + YL +
Sbjct: 281 NSLMNLGTSNDTLY--RNNADIFGQSSEWAKFSEVASIGMIHLFNSNP-YEILKNYLPSE 337
Query: 419 EDYIKAGALLALGIVNCGVRNECDPALALLSDYVLN--DSIT--LRIGAVLGLGLAYAGT 474
+ GAL+ALG++ G +E D L Y L+ D++T L G LGLGL G+
Sbjct: 338 VSQKEGGALMALGLIKAGTFSEEDTEYLL---YFLDTEDTLTPELAYGVCLGLGLINMGS 394
Query: 475 KRQEVVTLL 483
+E++ L
Sbjct: 395 ANREILNKL 403
>sp|P0C7R0|PPR69_ARATH Pentatricopeptide repeat-containing protein At1g32415,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2
SV=1
Length = 761
Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Query: 221 PERSVIT-NGVLNNYLKFKEYPRALTLALQL--NDEPSVLKIFQLCEDPVVRKQLAYMAG 277
PER+++T N +L Y+K + A TL ++ N + + LC+D G
Sbjct: 104 PERNIVTCNAMLTGYVKCRRMNEAWTLFREMPKNVVSWTVMLTALCDD-----------G 152
Query: 278 RQQITIELPDEMPDKN 293
R + +EL DEMP++N
Sbjct: 153 RSEDAVELFDEMPERN 168
>sp|Q9H1A4|APC1_HUMAN Anaphase-promoting complex subunit 1 OS=Homo sapiens GN=ANAPC1 PE=1
SV=1
Length = 1944
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 60/142 (42%), Gaps = 20/142 (14%)
Query: 424 AGALLALGIVNCGVRNECDPALALLS--DYVLNDSITLRIGAVLGLGLAYAGTKRQEVVT 481
AG L+ALG+ N LA L+ DY+ IG +LG+ A GT +
Sbjct: 1173 AGFLMALGL------NGHLTKLATLNIHDYLTKGHEMTSIGLLLGVSAAKLGTMDMSITR 1226
Query: 482 LL---LPVLTDRKST----PEVVAFAAVAA-SLIYVGTGYHEVASAILQTLIELPVSELQ 533
LL +P L ST P V AAV L+Y GT + A +L + P E++
Sbjct: 1227 LLSIHIPALLPPTSTELDVPHNVQVAAVVGIGLVYQGTAHRHTAEVLLAEIGRPPGPEME 1286
Query: 534 ----DGHYSRFLPLALAITYLG 551
YS LAL + LG
Sbjct: 1287 YCTDRESYSLAAGLALGMVCLG 1308
>sp|P53995|APC1_MOUSE Anaphase-promoting complex subunit 1 OS=Mus musculus GN=Anapc1 PE=1
SV=2
Length = 1944
Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 58/142 (40%), Gaps = 20/142 (14%)
Query: 424 AGALLALGIVNCGVRNECDPALALLS--DYVLNDSITLRIGAVLGLGLAYAGTKRQEVVT 481
AG L+ALG+ N LA L+ DY+ IG +LG+ A GT +
Sbjct: 1173 AGFLMALGL------NGHLTKLATLNIHDYLTKGHEMTSIGLLLGVSAAKLGTMDMSITR 1226
Query: 482 LL-------LPVLTDRKSTPEVVAFAAVAA-SLIYVGTGYHEVASAILQTLIELPVSELQ 533
LL LP + P V AAV L+Y GT + A +L + P E++
Sbjct: 1227 LLSIHVPALLPPTSTELDVPHNVQVAAVVGIGLVYQGTAHRHTAEVLLAEIGRPPGPEME 1286
Query: 534 ----DGHYSRFLPLALAITYLG 551
YS LAL + LG
Sbjct: 1287 YCTDRESYSLAAGLALGMVCLG 1308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 339,839,383
Number of Sequences: 539616
Number of extensions: 14658245
Number of successful extensions: 52839
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 52451
Number of HSP's gapped (non-prelim): 243
length of query: 913
length of database: 191,569,459
effective HSP length: 127
effective length of query: 786
effective length of database: 123,038,227
effective search space: 96708046422
effective search space used: 96708046422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)