Query psy6263
Match_columns 913
No_of_seqs 287 out of 792
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:54:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2005|consensus 100.0 1E-237 3E-242 1960.7 59.0 840 18-913 31-877 (878)
2 COG5110 RPN1 26S proteasome re 100.0 2E-203 4E-208 1653.4 57.3 857 5-913 17-878 (881)
3 KOG2062|consensus 100.0 4E-134 8E-139 1139.3 45.6 717 37-852 6-761 (929)
4 COG5116 RPN2 26S proteasome re 100.0 2E-111 4E-116 929.9 36.6 704 38-844 7-750 (926)
5 KOG2005|consensus 100.0 2.2E-42 4.8E-47 389.3 27.9 554 79-743 152-744 (878)
6 KOG2062|consensus 100.0 1.3E-41 2.8E-46 387.0 25.4 537 156-811 54-657 (929)
7 COG5116 RPN2 26S proteasome re 100.0 5.1E-38 1.1E-42 348.5 22.6 566 138-811 29-654 (926)
8 COG5110 RPN1 26S proteasome re 100.0 1.4E-34 3.1E-39 320.2 30.5 551 79-743 153-745 (881)
9 KOG1858|consensus 100.0 3.9E-30 8.4E-35 313.2 19.2 457 384-896 815-1350(1496)
10 KOG1858|consensus 99.3 1E-11 2.2E-16 153.8 12.2 175 377-554 839-1060(1496)
11 PRK09687 putative lyase; Provi 98.8 7.5E-07 1.6E-11 98.0 24.2 82 677-769 193-274 (280)
12 PRK09687 putative lyase; Provi 98.8 3.5E-06 7.7E-11 92.7 26.6 245 407-735 24-277 (280)
13 PRK13800 putative oxidoreducta 98.6 7.9E-06 1.7E-10 103.6 27.9 287 386-773 608-895 (897)
14 PRK13800 putative oxidoreducta 98.5 1.1E-05 2.5E-10 102.1 23.1 282 356-736 610-895 (897)
15 TIGR02270 conserved hypothetic 97.7 0.0042 9E-08 72.0 22.7 21 683-703 185-205 (410)
16 PF01851 PC_rep: Proteasome/cy 97.7 3.3E-05 7.2E-10 58.0 3.4 30 462-491 1-30 (35)
17 TIGR02270 conserved hypothetic 97.3 0.035 7.5E-07 64.5 23.1 212 444-740 55-267 (410)
18 COG1413 FOG: HEAT repeat [Ener 97.3 0.1 2.2E-06 58.7 26.0 55 678-736 215-269 (335)
19 COG1413 FOG: HEAT repeat [Ener 97.1 0.038 8.1E-07 62.1 19.6 89 677-773 181-269 (335)
20 PF01851 PC_rep: Proteasome/cy 97.0 0.00088 1.9E-08 50.3 4.1 35 695-729 1-35 (35)
21 PF13646 HEAT_2: HEAT repeats; 96.8 0.01 2.3E-07 52.8 9.6 86 679-773 3-88 (88)
22 KOG2171|consensus 96.7 1.8 4E-05 55.0 31.4 152 407-561 349-515 (1075)
23 KOG0567|consensus 96.6 0.11 2.4E-06 56.0 17.5 49 688-740 232-280 (289)
24 PF13646 HEAT_2: HEAT repeats; 96.4 0.014 3E-07 52.0 8.0 74 650-736 14-88 (88)
25 PF01602 Adaptin_N: Adaptin N 96.0 0.98 2.1E-05 53.8 23.4 80 676-758 267-348 (526)
26 PLN03200 cellulose synthase-in 95.8 1.9 4E-05 58.9 26.1 272 381-711 455-770 (2102)
27 PLN03200 cellulose synthase-in 95.0 2.4 5.2E-05 57.9 23.3 277 406-742 446-766 (2102)
28 PF12755 Vac14_Fab1_bd: Vacuol 94.9 0.071 1.5E-06 49.5 6.7 77 654-731 3-88 (97)
29 PF13513 HEAT_EZ: HEAT-like re 94.7 0.053 1.2E-06 44.3 4.8 48 690-737 1-54 (55)
30 KOG0567|consensus 94.4 2.1 4.6E-05 46.5 17.0 124 517-704 156-279 (289)
31 PTZ00429 beta-adaptin; Provisi 94.4 19 0.00042 45.3 28.1 79 412-492 111-193 (746)
32 KOG1078|consensus 94.2 3.1 6.8E-05 51.0 19.6 276 409-739 248-531 (865)
33 PRK11788 tetratricopeptide rep 93.9 14 0.0003 41.8 26.4 279 399-743 46-332 (389)
34 KOG2171|consensus 93.9 4.5 9.8E-05 51.6 20.9 86 654-740 326-418 (1075)
35 COG5240 SEC21 Vesicle coat com 93.9 1.2 2.6E-05 52.6 14.9 165 427-604 208-385 (898)
36 PF01602 Adaptin_N: Adaptin N 93.9 3.8 8.2E-05 48.8 20.0 92 412-507 85-179 (526)
37 KOG0166|consensus 93.8 5 0.00011 47.7 20.0 240 447-744 113-397 (514)
38 TIGR02917 PEP_TPR_lipo putativ 93.2 29 0.00062 43.1 36.9 184 398-599 611-796 (899)
39 COG5064 SRP1 Karyopherin (impo 90.9 10 0.00022 42.7 16.5 247 449-744 120-402 (526)
40 PRK10049 pgaA outer membrane p 90.5 50 0.0011 41.8 24.8 84 398-487 93-177 (765)
41 PRK12370 invasion protein regu 90.1 37 0.00081 41.2 22.5 207 478-755 322-533 (553)
42 TIGR02917 PEP_TPR_lipo putativ 89.8 61 0.0013 40.3 46.2 113 657-779 772-886 (899)
43 KOG0915|consensus 89.4 5.3 0.00012 52.3 14.5 80 410-489 822-910 (1702)
44 PRK11788 tetratricopeptide rep 88.5 49 0.0011 37.4 30.1 250 441-753 51-307 (389)
45 PTZ00429 beta-adaptin; Provisi 87.6 91 0.002 39.5 26.8 182 410-600 183-378 (746)
46 cd00020 ARM Armadillo/beta-cat 86.8 3.6 7.8E-05 37.9 8.6 66 678-743 9-81 (120)
47 KOG1824|consensus 86.5 1.1E+02 0.0023 39.2 23.2 285 418-753 582-899 (1233)
48 KOG0166|consensus 86.0 7.2 0.00016 46.5 12.1 141 555-744 110-270 (514)
49 PF12755 Vac14_Fab1_bd: Vacuol 84.8 3.9 8.5E-05 38.0 7.6 79 692-770 2-90 (97)
50 PF05004 IFRD: Interferon-rela 84.5 14 0.00031 41.5 13.3 28 677-704 229-256 (309)
51 KOG2259|consensus 81.8 25 0.00054 42.9 14.1 116 651-772 388-511 (823)
52 KOG2023|consensus 80.8 39 0.00085 41.3 15.2 323 386-782 368-737 (885)
53 PF02985 HEAT: HEAT repeat; I 80.2 2.6 5.5E-05 30.5 3.6 27 713-739 2-28 (31)
54 PF05004 IFRD: Interferon-rela 80.0 64 0.0014 36.3 16.3 139 445-583 88-256 (309)
55 COG5096 Vesicle coat complex, 77.0 9.9 0.00021 47.4 9.3 76 664-741 117-196 (757)
56 PF12348 CLASP_N: CLASP N term 76.6 33 0.00073 36.1 12.3 65 677-741 132-207 (228)
57 PF12717 Cnd1: non-SMC mitotic 75.7 21 0.00046 36.6 10.2 86 654-741 5-93 (178)
58 cd00020 ARM Armadillo/beta-cat 75.1 12 0.00027 34.2 7.6 61 678-738 51-118 (120)
59 KOG1824|consensus 74.9 2.6E+02 0.0056 36.1 21.0 310 462-811 754-1099(1233)
60 KOG1059|consensus 73.6 2.5E+02 0.0053 35.2 21.6 276 420-757 87-379 (877)
61 PRK15174 Vi polysaccharide exp 73.2 2.5E+02 0.0054 35.0 27.7 305 380-757 68-381 (656)
62 PF13513 HEAT_EZ: HEAT-like re 73.1 5 0.00011 32.6 3.9 25 479-505 29-53 (55)
63 smart00638 LPD_N Lipoprotein N 72.8 97 0.0021 37.7 16.5 84 509-601 320-404 (574)
64 PRK12370 invasion protein regu 72.5 2.3E+02 0.005 34.4 20.0 143 442-597 321-466 (553)
65 PRK10049 pgaA outer membrane p 72.4 2.8E+02 0.006 35.3 27.5 318 398-764 126-463 (765)
66 KOG1517|consensus 70.5 10 0.00022 48.2 7.1 61 681-741 605-672 (1387)
67 PF12717 Cnd1: non-SMC mitotic 70.2 25 0.00054 36.1 9.1 84 689-775 1-90 (178)
68 PF04840 Vps16_C: Vps16, C-ter 69.9 1.4E+02 0.0029 33.9 15.6 210 40-264 46-302 (319)
69 smart00299 CLH Clathrin heavy 69.7 48 0.001 32.1 10.7 49 225-273 83-132 (140)
70 smart00638 LPD_N Lipoprotein N 68.8 1.3E+02 0.0027 36.7 16.4 73 432-508 350-425 (574)
71 PF01347 Vitellogenin_N: Lipop 68.6 2.9E+02 0.0062 33.9 22.8 28 711-738 521-551 (618)
72 KOG3616|consensus 66.6 50 0.0011 40.7 11.5 128 137-273 1128-1262(1636)
73 PRK09782 bacteriophage N4 rece 66.6 4.1E+02 0.0089 35.0 23.5 158 423-599 476-636 (987)
74 COG5181 HSH155 U2 snRNP splice 66.6 78 0.0017 38.6 12.9 182 413-603 695-892 (975)
75 KOG0212|consensus 66.1 3.1E+02 0.0068 33.4 21.0 66 678-743 338-409 (675)
76 COG5181 HSH155 U2 snRNP splice 65.1 3.4E+02 0.0073 33.5 18.2 127 649-782 743-878 (975)
77 COG5096 Vesicle coat complex, 64.9 10 0.00022 47.3 5.7 62 678-739 94-155 (757)
78 KOG0213|consensus 64.7 2.5E+02 0.0054 35.3 16.7 90 650-744 939-1028(1172)
79 PF02985 HEAT: HEAT repeat; I 63.8 11 0.00023 27.2 3.5 26 679-704 3-28 (31)
80 PF04053 Coatomer_WDAD: Coatom 61.3 38 0.00083 40.1 9.5 86 184-279 355-440 (443)
81 KOG0211|consensus 61.1 56 0.0012 41.2 11.2 87 654-740 574-664 (759)
82 PF01347 Vitellogenin_N: Lipop 60.7 22 0.00047 43.6 7.7 99 418-526 502-603 (618)
83 KOG1060|consensus 60.0 4.6E+02 0.01 33.3 19.2 152 657-828 412-570 (968)
84 KOG0211|consensus 56.1 74 0.0016 40.2 11.0 100 677-777 559-664 (759)
85 KOG3617|consensus 55.2 55 0.0012 41.1 9.3 98 164-261 1081-1183(1416)
86 PRK15174 Vi polysaccharide exp 55.2 5.1E+02 0.011 32.3 29.3 280 395-744 49-333 (656)
87 cd06561 AlkD_like A new struct 53.8 2.6E+02 0.0056 28.5 14.1 76 679-755 108-184 (197)
88 KOG1062|consensus 53.5 5.8E+02 0.013 32.5 23.3 129 674-806 311-450 (866)
89 TIGR02521 type_IV_pilW type IV 52.0 2.6E+02 0.0056 27.9 20.0 89 502-595 69-157 (234)
90 PF12348 CLASP_N: CLASP N term 51.3 3.1E+02 0.0067 28.7 13.9 121 655-776 71-205 (228)
91 KOG0414|consensus 50.1 49 0.0011 43.0 8.2 86 654-740 940-1027(1251)
92 PRK11447 cellulose synthase su 49.5 7.9E+02 0.017 32.9 42.8 192 392-597 387-597 (1157)
93 KOG1125|consensus 49.4 2.7E+02 0.0058 33.9 13.6 168 420-600 315-526 (579)
94 KOG1058|consensus 47.7 2.1E+02 0.0046 35.9 12.5 72 412-488 105-181 (948)
95 PRK11447 cellulose synthase su 45.7 8.9E+02 0.019 32.4 28.7 51 401-454 160-210 (1157)
96 KOG0915|consensus 45.0 1E+03 0.022 32.8 22.3 69 459-527 1055-1138(1702)
97 KOG0213|consensus 45.0 7.6E+02 0.016 31.4 27.6 182 413-603 890-1087(1172)
98 KOG4224|consensus 43.4 5.9E+02 0.013 29.6 15.8 88 420-509 184-280 (550)
99 PF12711 Kinesin-relat_1: Kine 42.6 1.1E+02 0.0023 28.1 7.1 62 23-110 19-82 (86)
100 KOG1943|consensus 42.2 9.5E+02 0.021 31.7 18.1 81 655-740 524-611 (1133)
101 PF14668 RICTOR_V: Rapamycin-i 42.2 63 0.0014 28.6 5.4 41 709-752 26-67 (73)
102 KOG2025|consensus 42.2 2.1E+02 0.0046 35.7 11.4 48 686-733 136-186 (892)
103 PF04053 Coatomer_WDAD: Coatom 39.3 2E+02 0.0044 34.1 10.8 107 166-278 298-417 (443)
104 PF06957 COPI_C: Coatomer (COP 38.6 51 0.0011 38.7 5.6 90 182-275 259-359 (422)
105 PF09976 TPR_21: Tetratricopep 38.5 3.8E+02 0.0082 26.0 14.9 93 496-593 46-138 (145)
106 KOG0985|consensus 38.5 2.3E+02 0.0051 36.8 11.2 69 205-273 1037-1111(1666)
107 PF08713 DNA_alkylation: DNA a 38.1 1.1E+02 0.0024 31.7 7.7 76 677-753 121-196 (213)
108 KOG1060|consensus 38.0 9.8E+02 0.021 30.6 22.8 88 414-505 116-205 (968)
109 PF11768 DUF3312: Protein of u 35.1 2E+02 0.0043 34.9 9.7 93 169-262 414-532 (545)
110 KOG2023|consensus 34.9 7.4E+02 0.016 31.0 14.2 148 29-215 470-622 (885)
111 COG5098 Chromosome condensatio 34.1 1.4E+02 0.003 37.1 8.1 65 678-742 936-1003(1128)
112 KOG1061|consensus 34.0 79 0.0017 39.4 6.4 104 679-782 124-256 (734)
113 KOG4224|consensus 33.7 65 0.0014 36.9 5.2 65 679-743 211-283 (550)
114 KOG4653|consensus 33.5 5E+02 0.011 33.3 12.9 165 415-588 736-922 (982)
115 TIGR02521 type_IV_pilW type IV 33.0 5E+02 0.011 25.8 15.4 184 400-599 43-229 (234)
116 PF10508 Proteasom_PSMB: Prote 32.8 9.5E+02 0.02 28.9 25.2 83 683-765 297-394 (503)
117 PF10363 DUF2435: Protein of u 31.5 47 0.001 30.6 3.1 34 34-67 2-35 (92)
118 PF04826 Arm_2: Armadillo-like 30.9 2.3E+02 0.005 31.0 8.9 64 681-744 17-87 (254)
119 KOG1059|consensus 30.5 1.2E+03 0.026 29.5 16.7 200 32-250 178-421 (877)
120 KOG2973|consensus 30.5 66 0.0014 36.2 4.5 82 24-115 231-317 (353)
121 KOG2076|consensus 30.3 1.3E+03 0.028 29.8 16.2 55 23-94 132-186 (895)
122 KOG1517|consensus 29.0 4.6E+02 0.0099 34.4 11.6 89 421-512 572-673 (1387)
123 PF12719 Cnd3: Nuclear condens 28.9 8.3E+02 0.018 27.0 13.2 138 675-831 26-180 (298)
124 KOG1240|consensus 27.9 3E+02 0.0066 36.4 10.0 131 412-546 584-720 (1431)
125 KOG0212|consensus 27.2 1.3E+03 0.027 28.6 14.5 180 39-239 381-592 (675)
126 KOG1155|consensus 27.1 2.8E+02 0.006 33.1 8.8 51 203-254 412-465 (559)
127 KOG1943|consensus 27.1 1.6E+03 0.035 29.8 19.8 120 686-810 516-639 (1133)
128 KOG2908|consensus 26.6 6.6E+02 0.014 28.9 11.3 83 185-278 124-206 (380)
129 KOG1920|consensus 26.4 1.6E+03 0.036 30.0 16.0 32 231-262 1033-1064(1265)
130 KOG1062|consensus 25.4 6E+02 0.013 32.3 11.6 31 37-67 352-382 (866)
131 COG5064 SRP1 Karyopherin (impo 25.4 1.1E+03 0.024 27.3 17.0 54 681-744 374-428 (526)
132 KOG2259|consensus 25.2 2.8E+02 0.006 34.4 8.6 77 691-770 388-468 (823)
133 PF10508 Proteasom_PSMB: Prote 25.2 8.9E+02 0.019 29.1 13.3 67 678-744 162-235 (503)
134 PF12688 TPR_5: Tetratrico pep 24.3 6.5E+02 0.014 24.3 10.3 97 503-603 6-106 (120)
135 PF13429 TPR_15: Tetratricopep 24.0 3.6E+02 0.0079 29.1 9.0 80 658-744 183-263 (280)
136 smart00185 ARM Armadillo/beta- 23.9 97 0.0021 22.7 3.2 27 37-63 14-40 (41)
137 COG3817 Predicted membrane pro 23.4 2.7E+02 0.0059 30.5 7.4 61 459-525 131-198 (313)
138 PF10363 DUF2435: Protein of u 23.4 4.6E+02 0.0099 24.1 8.1 70 685-758 12-86 (92)
139 PF09384 UTP15_C: UTP15 C term 22.6 3.2E+02 0.0069 27.4 7.5 33 168-200 23-56 (148)
140 KOG0292|consensus 22.5 1.6E+02 0.0036 37.4 6.2 88 182-276 1046-1144(1202)
141 PF05918 API5: Apoptosis inhib 22.2 3.2E+02 0.007 33.4 8.6 45 711-755 59-105 (556)
142 PHA03033 hypothetical protein; 21.1 31 0.00066 33.5 -0.1 39 53-91 90-139 (142)
143 PF07539 DRIM: Down-regulated 21.0 1.2E+02 0.0026 30.2 4.1 46 39-97 21-66 (141)
144 PF13461 C-term_anchor: Cell-w 20.8 70 0.0015 26.6 2.0 34 839-877 2-39 (57)
145 PF10193 Telomere_reg-2: Telom 20.6 1.6E+02 0.0034 28.2 4.6 72 37-109 5-78 (114)
146 PLN03081 pentatricopeptide (PP 20.2 1.7E+03 0.037 27.6 17.7 212 503-779 264-477 (697)
147 TIGR00990 3a0801s09 mitochondr 20.1 1.6E+03 0.035 27.3 28.6 11 579-589 473-483 (615)
No 1
>KOG2005|consensus
Probab=100.00 E-value=1.2e-237 Score=1960.71 Aligned_cols=840 Identities=56% Similarity=0.903 Sum_probs=809.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCChhccHHHHHHHHHHHHhhccccccCCCchhhhhhhHHHHHHHHhhcCCC
Q psy6263 18 KGEKNPDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQ 97 (913)
Q Consensus 18 ~~~~~~~~lse~d~~~k~~l~~lv~~L~e~d~~l~~~AL~~L~~~i~~~t~s~tsvpkplk~l~~~~~~l~~~ye~~~~~ 97 (913)
|+++|+++|||||+|||++||++|+|++|+|++|+++||++|+++||+|||||||||||||||||||+.|+++|++|.++
T Consensus 31 k~~~k~e~lSEED~~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~ 110 (878)
T KOG2005|consen 31 KDKDKEEDLSEEDLQLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADS 110 (878)
T ss_pred ccchhhhhccHHHHHhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCc
Confidence 46667899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHheeccCcCchhhhhhhhhcCCCCCCCCcChHHHHHHHHHHHHHHhc--cC-ChhHHHHHHHHHHHHHh
Q psy6263 98 KPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATN--KY-EKPQLLELIEDIIQFDM 174 (913)
Q Consensus 98 ~~r~l~a~i~S~l~~~~~~~~~~~L~y~L~~~~~~~~~wg~eYvr~l~~~i~~~y~~~--~~-~~~~L~~lv~~iv~~~l 174 (913)
..|+++|||+|+++||++ +..+.|+|||.|+..++++|||||||||++||.++|+++ ++ ..+++..++.+||+|+|
T Consensus 111 n~Kk~laDIlSvLamt~s-e~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~m 189 (878)
T KOG2005|consen 111 NLKKWLADILSVLAMTMS-ERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHM 189 (878)
T ss_pred hhHhHHHHHHHHHheeec-ccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHH
Confidence 899999999999999999 888899999999999999999999999999999999997 33 36899999999999999
Q ss_pred ccCCHHHHHHHHHhhCchhhHHHHHhccChHHHHHHHHhhcccCCChhhHHHHHHHHHHHhccCCHHHHHHHHHhcCCch
Q psy6263 175 KHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEP 254 (913)
Q Consensus 175 ~~n~e~eAidlalE~~~ld~i~~~v~~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~iy~~~~~~~~al~~al~L~d~~ 254 (913)
+||+|.||||+++|++++|++.+|||++||.|+|+|+.+|++|+|.|++..++++++.||+|+++|++|+++|++++|.+
T Consensus 190 kHNAE~eAiDlL~Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~ 269 (878)
T KOG2005|consen 190 KHNAEFEAIDLLMEVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMK 269 (878)
T ss_pred hccchhHHHHHHHHhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhccCChhHHHHHHHHHhhccccccCCCCCCCchhHHHhhcCccchhhhhhhhhhhcccCCCChHHHHHHHhhhh
Q psy6263 255 SVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKTWLENI 334 (913)
Q Consensus 255 ~v~~i~~~~~d~~~~~Qiaf~lar~~~~~~~~~~~~~~~~l~~il~N~~l~~~f~~l~k~ldil~~k~~~diyk~~L~~~ 334 (913)
.|+++|.+|+|++++||+||+||||+++++..+ ++.+++|++|.+++++|++++|+++|++||+||||||+|++++
T Consensus 270 ~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~----~e~l~di~sN~~Lse~f~~LarELeimepk~pedIyK~hl~~~ 345 (878)
T KOG2005|consen 270 EVKEVFTSCTDPLLKKQMAYMLARHGIYFELSE----DEELQDILSNGKLSEHFLYLARELEIMEPKVPEDIYKSHLEDS 345 (878)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCceecCc----CHHHHHHHccccHHHHHHHHHHHhcccCCCChHHHHHHHHhcc
Confidence 999999999999999999999999999998653 4679999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCccchhhhhHHHHHHHHHHhcccCccccccccc--CCcccccccchhhHHHHHHhhhhhcccCCCcccccc
Q psy6263 335 VLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVED--GNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPID 412 (913)
Q Consensus 335 ~~~~~~~~~~~~dsar~~lA~~~~naf~naG~~~D~~l~~~~--~~~wl~k~~~~~k~sA~aslGlI~~~~~~~~l~~l~ 412 (913)
|.. .+..+||||||+|++|||||||+|||+|++|.+.+ ...|+|||+++++.+|+||+|+|.+||+|.|+++++
T Consensus 346 --r~~--s~a~vdSarqnla~~fvNgFVn~Gyg~Dkl~~~~~~s~~~w~yknke~g~~sa~aS~G~I~~Wnvd~gL~qld 421 (878)
T KOG2005|consen 346 --RGG--SGAGVDSARQNLAATFVNGFVNAGYGQDKLMLVQEGSRVNWLYKNKEHGMTSAAASLGMIQLWNVDKGLEQLD 421 (878)
T ss_pred --ccc--cccCccHHHHHHHHHHHHHHhhcccCCCceeccCccccCcceeeccccCchHhhhhcchhheecchhhHHHHH
Confidence 732 36779999999999999999999999999998533 468999999999999999999999999999999999
Q ss_pred ccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCCC
Q psy6263 413 KYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKS 492 (913)
Q Consensus 413 ~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~~ 492 (913)
+|||++++|+++||++|+|++++|+++||||++++|++|+.+++..+++||+||||++|+||+|+++...|.|++.|++.
T Consensus 422 kylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~Pi~~d~~~ 501 (878)
T KOG2005|consen 422 KYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSPIMFDTKS 501 (878)
T ss_pred HHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhh
Q psy6263 493 TPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRS 572 (913)
Q Consensus 493 ~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r 572 (913)
++|+.++|+|+||+||+||||+++...|++.+++++++++.+ .+.||+++|||++|+|++|+++++.+.++++++|+.+
T Consensus 502 ~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d-~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~~~~~~ 580 (878)
T KOG2005|consen 502 PMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELED-QWFRFLALGLALLFLGKQESVDAVVETIKAIEGPIRK 580 (878)
T ss_pred chhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhc-hHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhHHHH
Confidence 899999999999999999999999999999999998888887 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCHHHH--HHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhh
Q psy6263 573 MAKMMLKMCAYAGSGDVLVV--QEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEK 650 (913)
Q Consensus 573 ~~~~~~lglAyaGTGn~~~I--q~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (913)
+..+++.+|||+||||+.+| |.++|+|.+|... .
T Consensus 581 ~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~--------------------------------------------~ 616 (878)
T KOG2005|consen 581 HESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDAD--------------------------------------------L 616 (878)
T ss_pred HHHHHHHHhhccccCceEEechhhhhhhcCCCccc--------------------------------------------h
Confidence 99999999999999999999 9999999988641 1
Q ss_pred hhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHH
Q psy6263 651 DLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHN 730 (913)
Q Consensus 651 dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~ 730 (913)
+ ..+-+++||+++|+|||++|.||+.|+|+|++||++|+|||++|||+||+|+|||+.+|+|+|+||+||+|.+|+.|
T Consensus 617 e--~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~n 694 (878)
T KOG2005|consen 617 E--SEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMN 694 (878)
T ss_pred h--hhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHH
Confidence 1 23348899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhcCCCceecccccCCCCCCChHHHHHHHHHHHHhh
Q psy6263 731 AIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFL 810 (913)
Q Consensus 731 AiiALGlV~aGtnn~ri~~~Lr~L~~~~~~d~~~~f~~~iAqGLl~~Gkg~~tLsp~~sd~~~~~~~alagLl~~l~~~l 810 (913)
||||||||||||||+|++++||||++||+||++++|.+||||||+|+|||++|++|||+||++++|+|+|||+++++.++
T Consensus 695 aIfamGLiGAGTnNARla~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKGtltl~p~~~dr~ll~p~alagl~t~~~~~L 774 (878)
T KOG2005|consen 695 AIFAMGLIGAGTNNARLAQMLRQLASYYYKDSKALFVVRIAQGLVHLGKGTLTLSPFHSDRQLLMPTALAGLLTTVFALL 774 (878)
T ss_pred HHHHhccccCCcchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCceecccccchhhhhchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhHHHhhhhhcccceeeeecCCCcceeeEEeeccceeccccCCCCceeeceeeeecceecccCccceecC
Q psy6263 811 DTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELAT 890 (913)
Q Consensus 811 ~~~~~i~~~~h~l~~~l~lA~~Pr~li~~d~~l~~~~v~vrvg~avd~vg~ag~pk~itg~qth~tPvll~~~eraela~ 890 (913)
|++.+++.++||++|||++||+|||++|+|++++|++|+|||||||||||||||||||||||||||||||+|||||||||
T Consensus 775 D~~i~l~~~~H~~ly~Lv~amqprm~~T~~e~~~pl~V~VRVGqaVdvVGqaGrPKtITg~qTHtTPVlLahgeRAElat 854 (878)
T KOG2005|consen 775 DANIILLVKSHYLLYFLVLAMQPRMLVTVDEELEPLPVNVRVGQAVDVVGQAGRPKTITGFQTHTTPVLLAHGERAELAT 854 (878)
T ss_pred ccchhccchHHHHHHHHHHhhCceEEEeecccCccccceeeccchhhhhhccCCCceecceeccCcceecccchhhhhcc
Confidence 99955555899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCcccceEEEeecCCCCC
Q psy6263 891 DDYVPLTPVMEGFVILRKKDKDD 913 (913)
Q Consensus 891 ~~~~~~~~~leg~vi~~~~~~~~ 913 (913)
|||+|+||.||||||||||||++
T Consensus 855 d~y~p~t~~lEg~vILkkNp~y~ 877 (878)
T KOG2005|consen 855 DEYLPLTSHLEGVVILKKNPDYI 877 (878)
T ss_pred ccccccccccceEEEEecCCccc
Confidence 99999999999999999999984
No 2
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-203 Score=1653.39 Aligned_cols=857 Identities=41% Similarity=0.645 Sum_probs=815.8
Q ss_pred CCCCCccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCChhccHHHHHHHHHHHHhhccccccCCCchhhhhhhH
Q psy6263 5 IAVPDKDEKVTKGKGEKNPDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHY 84 (913)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lse~d~~~k~~l~~lv~~L~e~d~~l~~~AL~~L~~~i~~~t~s~tsvpkplk~l~~~~ 84 (913)
..+|.|..|-+|.|+++++|.|||||.++|.+||.+|+|++|+|++|+..+|.+|++.||+||||||.||||||||||||
T Consensus 17 ~~s~e~~~~n~~~k~kee~e~lseed~~lk~dLellVeriqd~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y 96 (881)
T COG5110 17 QISPEKQTPNKKDKKKEEEEQLSEEDAMLKGDLELLVERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNY 96 (881)
T ss_pred ccCcccCCCCccchhhhhHhhhchhhhhhcccHHHHHHHhhCCChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCc
Confidence 45566666666666667789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHheeccCc-CchhhhhhhhhcCCCCCCCCcChHHHHHHHHHHHHHHhc---cCC-h
Q psy6263 85 GALKEACEKMTDQKPKKLLCSIISVLAMSQDN-VEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATN---KYE-K 159 (913)
Q Consensus 85 ~~l~~~ye~~~~~~~r~l~a~i~S~l~~~~~~-~~~~~L~y~L~~~~~~~~~wg~eYvr~l~~~i~~~y~~~---~~~-~ 159 (913)
..+.++|++|+.+..|..+|||+|+++|++++ +++++|+|||+|...|+..|||||||||++||.++|+.+ +.+ .
T Consensus 97 ~dl~~iydkw~~~n~K~~LaDilS~l~m~yse~~kh~sL~YRl~g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~ 176 (881)
T COG5110 97 LDLLEIYDKWLEGNKKRWLADILSALCMVYSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSF 176 (881)
T ss_pred chHHHHHhhccCcchhhHHHHHHHHHeeecccccchhhHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhcchhhccCCch
Confidence 99999999999998899999999999999997 789999999999999999999999999999999999976 334 5
Q ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHhhCchhhHHHHHhccChHHHHHHHHhhcccCCChhhHHHHHHHHHHHhccCC
Q psy6263 160 PQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKE 239 (913)
Q Consensus 160 ~~L~~lv~~iv~~~l~~n~e~eAidlalE~~~ld~i~~~v~~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~iy~~~~~ 239 (913)
.+++.+-.+||||+++||+|.+|||+++|++.+|++.+|||.+||.|+|+|+.+|++.+|.|++..++++++.||+|+++
T Consensus 177 ~dt~~l~l~ivpfflkHNaE~dAiDlL~Evg~Iekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~ 256 (881)
T COG5110 177 ADTRDLGLEIVPFFLKHNAEFDAIDLLVEVGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGD 256 (881)
T ss_pred hHHHHHHHHHhHHHHhcccchHHHHHHHHhcchhhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchhHHHHHhccCChhHHHHHHHHHhhccccccCCCCCCCchhHHHhhcCccchhhhhhhhhhhcccC
Q psy6263 240 YPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSLARELDIME 319 (913)
Q Consensus 240 ~~~al~~al~L~d~~~v~~i~~~~~d~~~~~Qiaf~lar~~~~~~~~~~~~~~~~l~~il~N~~l~~~f~~l~k~ldil~ 319 (913)
+.+++..|+++++.+.+++.+.+.+||.+++|++|+|||||++++.. ++.++.|++|.+++++|+++++++++..
T Consensus 257 lt~av~~aiRl~~~~~i~e~~~a~~Dp~~kKQ~~YiLArq~~~~e~~-----dee~~dil~Ng~lsdhf~ylgkELnl~~ 331 (881)
T COG5110 257 LTRAVVGAIRLQKSKEIIEYVRAIEDPDYKKQCLYILARQNLYYEAS-----DEEEKDILSNGYLSDHFRYLGKELNLDK 331 (881)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhccChHHHHHHHHHHHhccCCcccC-----CHHHHHHhcCCcHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999998753 3568899999999999999999999999
Q ss_pred CCChHHHHHHHhhhhcCCCCCCCCCccchhhhhHHHHHHHHHHhcccCcccccccccCCcccccccchhhHHHHHHhhhh
Q psy6263 320 PKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLI 399 (913)
Q Consensus 320 ~k~~~diyk~~L~~~~~~~~~~~~~~~dsar~~lA~~~~naf~naG~~~D~~l~~~~~~~wl~k~~~~~k~sA~aslGlI 399 (913)
||.|+||||+|++.. |+.+. ...++||++|+|.+|+|+++|+|+.+|+++- .+.+|+||++..++.||+||+|+|
T Consensus 332 PkvpedI~K~hl~~~--k~~~~-~agi~sA~qnla~~fvn~~inlgy~nD~li~--~dd~wiyk~k~~gliSa~aSIG~i 406 (881)
T COG5110 332 PKVPEDILKGHLKYD--KDTRQ-LAGIGSANQNLAMGFVNDPINLGYENDSLIP--LDDEWIYKCKVPGLISAFASIGVI 406 (881)
T ss_pred CCChHHHHHhhhhcc--ccchh-hcccchhhhHHHHhhhccccccCccCCeeee--cchhhhhcCCCCChhheeecchhh
Confidence 999999999999765 55543 4568999999999999999999999999998 677899999999999999999999
Q ss_pred hcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHH
Q psy6263 400 YLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEV 479 (913)
Q Consensus 400 ~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e~v 479 (913)
..||.|.|++.|++|||++.+|.|+||++|+|+...++++|.+|++++|++||++++...+++|+||||++|.|++++++
T Consensus 407 ~~WN~d~gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eev 486 (881)
T COG5110 407 ESWNSDKGLETLDKYLYADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEV 486 (881)
T ss_pred hhhhhHhhHHHHHHHHhcCcccccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHH
Q psy6263 480 VTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTT 559 (913)
Q Consensus 480 ~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~l 559 (913)
.++|.|++.+++.++|++.+|+++||.||+||||+++...|++.++++...+.+. .|.||+++|||.+|+|++|++++.
T Consensus 487 l~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~t-qw~RFlaLgLa~Lf~g~~d~~d~v 565 (881)
T COG5110 487 LELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESET-QWFRFLALGLASLFYGRKDQVDDV 565 (881)
T ss_pred HHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHHccccchhHHH
Confidence 9999999998888999999999999999999999999999999999987655655 899999999999999999999999
Q ss_pred HHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhch
Q psy6263 560 LAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAAND 639 (913)
Q Consensus 560 l~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (913)
.++++++..|+.|...+++-||+|+||||+..||.|||+|.+.....
T Consensus 566 ~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~--------------------------------- 612 (881)
T COG5110 566 EETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGDT--------------------------------- 612 (881)
T ss_pred HHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCccc---------------------------------
Confidence 99999999999999999999999999999999999999986543210
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhh
Q psy6263 640 KKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKY 719 (913)
Q Consensus 640 ~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~ 719 (913)
-| +.+. ..+.+++||+|+|+|||++|.||+.|+|+|++||+++|||+.+|||+|++++|||+++++|+|+|+
T Consensus 613 ~k-------~~ea-~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm~vfDtL~r~ 684 (881)
T COG5110 613 LK-------NEEA-LIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMNVFDTLERS 684 (881)
T ss_pred ch-------hhHH-HHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcchHHHHHHHHh
Confidence 00 1121 446789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhcCCCceecccccCCCCCCChHHH
Q psy6263 720 SHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVAL 799 (913)
Q Consensus 720 s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~~~~~~d~~~~f~~~iAqGLl~~Gkg~~tLsp~~sd~~~~~~~al 799 (913)
+||.|.+|..|+|||||++||||+|+|++++||||++||+++.+++|.+||||||+++|||++|++|||.|++.+.|++.
T Consensus 685 shd~dl~v~~ntIfamGLiGAGT~NaRlaqlLrQlaSYY~kes~aLfv~riAQGLl~LGKGtmti~p~~~d~~~l~~~~~ 764 (881)
T COG5110 685 SHDGDLNVIINTIFAMGLIGAGTLNARLAQLLRQLASYYYKESKALFVLRIAQGLLSLGKGTMTISPLYFDKTTLMPKNT 764 (881)
T ss_pred ccccchhHHHHHHHHhhccccCcchHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCceeeccccccchhhcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccccchhHHHhhhhhcccceeeeecCCCcceeeEEeeccceeccccCCCCceeeceeeeeccee
Q psy6263 800 AGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVL 879 (913)
Q Consensus 800 agLl~~l~~~l~~~~~i~~~~h~l~~~l~lA~~Pr~li~~d~~l~~~~v~vrvg~avd~vg~ag~pk~itg~qth~tPvl 879 (913)
|||+++.+..+|+..+.+..+|+++|++.++++||++||+.|+++|++|+||||||||||||||+||.||||||||||||
T Consensus 765 agl~ttv~~lld~~~f~L~ssH~l~y~l~~~irp~~~vtl~e~ge~i~vnvRVGqav~tVGqaGrPKkitgw~ThttPVl 844 (881)
T COG5110 765 AGLFTTVFMLLDSSIFPLVSSHALMYFLLCQIRPQKYVTLSEKGEPIKVNVRVGQAVNTVGQAGRPKKITGWQTHTTPVL 844 (881)
T ss_pred HHHHHHHHHHHccccchhhhhHHHHHHHHhccCcceEEEecCCCceeeeEEeecchhhhhhccCCCceeeeeeecCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccceecCCCccccCcccceEEEeecCCCCC
Q psy6263 880 LAVGERAELATDDYVPLTPVMEGFVILRKKDKDD 913 (913)
Q Consensus 880 l~~~eraela~~~~~~~~~~leg~vi~~~~~~~~ 913 (913)
|+|+||||++||||.|+|+.+|||||||||||+.
T Consensus 845 L~h~eRAEl~td~y~~~tS~iEgvvILKKN~d~~ 878 (881)
T COG5110 845 LSHKERAELDTDEYNVCTSYIEGVVILKKNPDYR 878 (881)
T ss_pred eccchhhhcccccccchhhhhceeEEEecCcccc
Confidence 9999999999999999999999999999999973
No 3
>KOG2062|consensus
Probab=100.00 E-value=3.5e-134 Score=1139.31 Aligned_cols=717 Identities=21% Similarity=0.279 Sum_probs=654.7
Q ss_pred HHHHHHHhcCCChhccHHHHHHHHHHHHhhccccccCCCchhhhhhhHHHHHHHHhhcCCChhHHHHHHHHHHheeccCc
Q psy6263 37 LNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDN 116 (913)
Q Consensus 37 l~~lv~~L~e~d~~l~~~AL~~L~~~i~~~t~s~tsvpkplk~l~~~~~~l~~~ye~~~~~~~r~l~a~i~S~l~~~~~~ 116 (913)
.-.++.+|.|+.++|+.+||..++++|+.+|+ +|++.++.||.+||+.+|+ .|+++|+++|||||+++
T Consensus 6 Aa~lialL~e~~~~lk~~Al~~in~vVd~~Wp----------EIsd~l~~IE~lyed~~F~-er~~AaL~~SKVyy~Lg- 73 (929)
T KOG2062|consen 6 AAGLIALLREPEPSLKVHALFKINNVVDQFWP----------EISDSLPKIESLYEDETFP-ERQLAALLASKVYYYLG- 73 (929)
T ss_pred hHHHHHHHhCCchHHHHHHHHHHHHHHHHhhH----------HhhhhHHHHHHHhccCCCc-hhHHHHHHHHHHHHHHH-
Confidence 45789999999999999999999999999995 9999999999999999998 79999999999999999
Q ss_pred CchhhhhhhhhcCCCCCCCCcChHHHHHHHHHHHHHHhc-----------cCChhHHHHHHHHHHHHHhccCCHHHHHHH
Q psy6263 117 VEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATN-----------KYEKPQLLELIEDIIQFDMKHNAEIQACDL 185 (913)
Q Consensus 117 ~~~~~L~y~L~~~~~~~~~wg~eYvr~l~~~i~~~y~~~-----------~~~~~~L~~lv~~iv~~~l~~n~e~eAidl 185 (913)
+|++||.|+|.|++.|+.+.+++|+.+++.+|+|.|++. ..++++|+.+|++|+..|+.+|++.+||||
T Consensus 74 eye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGi 153 (929)
T KOG2062|consen 74 EYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGI 153 (929)
T ss_pred HHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhH
Confidence 999999999999999999999999999999999999976 245899999999999999999999999999
Q ss_pred HHhhCchhhHHH-HHhccChHHHHHHHHhh-cccCCC-hhhHHHHHHHHHHHhccC--CHHHHHHHHHhcCCchhHHHHH
Q psy6263 186 LMEIDHLELLDK-HMDVTNYPRVCLYLSNC-ALYVEE-PERSVITNGVLNNYLKFK--EYPRALTLALQLNDEPSVLKIF 260 (913)
Q Consensus 186 alE~~~ld~i~~-~v~~~~~~ri~~Yl~~~-~~~~~~-~~~~~vl~~~~~iy~~~~--~~~~al~~al~L~d~~~v~~i~ 260 (913)
|+|++|+|+|++ +++..+....|.|++.. ..++.+ .+|.++++++++.|.+++ +|+..|+|.+.|+|++.+++++
T Consensus 154 a~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll 233 (929)
T KOG2062|consen 154 AFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLL 233 (929)
T ss_pred HhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHH
Confidence 999999999999 55667777799998855 445554 679999999999999876 9999999999999999999999
Q ss_pred hcc---CChhHHHHHHHHHhh--cccccc-CCCCCCCchhHHHhhcCccchhhhhhhhhhhcccCCCChHHHHHHHhh-h
Q psy6263 261 QLC---EDPVVRKQLAYMAGR--QQITIE-LPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKTWLE-N 333 (913)
Q Consensus 261 ~~~---~d~~~~~Qiaf~lar--~~~~~~-~~~~~~~~~~l~~il~N~~l~~~f~~l~k~ldil~~k~~~diyk~~L~-~ 333 (913)
+++ +|.+++|||||||.+ +|.|+. +.+.++ .. --.......+...||+++.+.++|.+||. +
T Consensus 234 ~kL~~e~~~llayQIAFDL~esasQefL~~v~~~l~----------~d-~~~de~p~~kii~ILSGe~tik~~l~FL~~~ 302 (929)
T KOG2062|consen 234 EKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDRLP----------AD-DARDEKPMEKIISILSGEETIKLYLQFLLRH 302 (929)
T ss_pred HHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHHcc----------cc-cccccChHHHHHHHhcCchHHHHHHHHHHHc
Confidence 996 457899999999998 566664 221111 00 11112235677889999999999999994 5
Q ss_pred hcCCCCCC-CCCccchh---hhhHHHHHHHHHHhcccCcccccccccCCcccccccchhhHHHHHHhhhhhcccCCCccc
Q psy6263 334 IVLRPTYN-LDVPVDSA---RHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLT 409 (913)
Q Consensus 334 ~~~~~~~~-~~~~~dsa---r~~lA~~~~naf~naG~~~D~~l~~~~~~~wl~k~~~~~k~sA~aslGlI~~~~~~~~l~ 409 (913)
| +.++. +..+.++. .+|.|++++|||||+||++|+|+| +|++|+.|++||+||+|+||||+||.||..+|++
T Consensus 303 N--~tD~~iL~~iK~s~r~sv~H~A~~iAN~fMh~GTT~D~FlR--~NL~WlskAtNWaKFtAtAsLGvIH~G~~~~~~~ 378 (929)
T KOG2062|consen 303 N--NTDLLILEEIKESVRNSVCHTATLIANAFMHAGTTSDTFLR--NNLDWLSKATNWAKFTATASLGVIHRGHENQAMK 378 (929)
T ss_pred C--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCcchHHHH--hchhHHhhcchHhhhhhhhhcceeeccccchHHH
Confidence 5 55543 12233333 379999999999999999999999 9999999999999999999999999999999999
Q ss_pred cccccccC----chhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCHHHHHHHH
Q psy6263 410 PIDKYLYT----SEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLND-SITLRIGAVLGLGLAYAGTKRQEVVTLLL 484 (913)
Q Consensus 410 ~l~~yL~s----~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~-~~~v~~gA~LGLGlay~Gs~~e~v~e~L~ 484 (913)
+|.+|||+ ++.|.+|||+||+||||+||+++ +.++|..+|.+. ++.++||+|||||++.+||+|+++++.|+
T Consensus 379 ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~---~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lK 455 (929)
T KOG2062|consen 379 LLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG---ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEEIYEKLK 455 (929)
T ss_pred HhhhhCCccCCCCCCccccchhhhhhccccCcCcc---HHHHHHHHHHhccchhhhhhhhhhccchhcccccHHHHHHHH
Confidence 99999997 68999999999999999999985 789999999864 57899999999999999999999999999
Q ss_pred Hhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHH
Q psy6263 485 PVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAAL 563 (913)
Q Consensus 485 ~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L 563 (913)
.+++ |++++.| +|++||||+++||.+.+++++|++|..+ ++||++.|++++|++|+.|||++.++.+|+.+
T Consensus 456 evLy~D~AvsGE---AAgi~MGl~mlGt~~~eaiedm~~Ya~E-----TQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el 527 (929)
T KOG2062|consen 456 EVLYNDSAVSGE---AAGIAMGLLMLGTANQEAIEDMLTYAQE-----TQHEKIIRGLAVGIALVVYGRQEDADPLIKEL 527 (929)
T ss_pred HHHhccchhhhh---HHHHhhhhHhhCcCcHHHHHHHHHHhhh-----hhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHH
Confidence 9997 6677777 9999999999999999999999999998 88999999999999999999999999999999
Q ss_pred hcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhh
Q psy6263 564 EVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEK 643 (913)
Q Consensus 564 ~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (913)
..+.||+.||++++++++||+||||+.+|++|||+++++.
T Consensus 528 ~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~---------------------------------------- 567 (929)
T KOG2062|consen 528 LRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDV---------------------------------------- 567 (929)
T ss_pred hcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccccc----------------------------------------
Confidence 9999999999999999999999999999999999998775
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCc
Q psy6263 644 KDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDL 723 (913)
Q Consensus 644 ~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~ 723 (913)
++|| ||+|+++|||+|+.. ++.++++++.|++++|||||||+++|||+.|||+++..+++.|+++.+|+
T Consensus 568 -----nDDV-rRaAVialGFVl~~d-----p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~ 636 (929)
T KOG2062|consen 568 -----NDDV-RRAAVIALGFVLFRD-----PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDP 636 (929)
T ss_pred -----chHH-HHHHHHHheeeEecC-----hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcCh
Confidence 4788 999999999999987 78899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHHh---cCChhHHHHHHHHHHHhhcCCCceecccccCCCCCCChH
Q psy6263 724 DEEVAHNAIFSMGLVGAGTN---NARLATMLRQLAQYH---VKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPV 797 (913)
Q Consensus 724 d~~Vr~~AiiALGlV~aGtn---n~ri~~~Lr~L~~~~---~~d~~~~f~~~iAqGLl~~Gkg~~tLsp~~sd~~~~~~~ 797 (913)
.++|||+|.||+|||++|.+ ||++..+++++.+.. |+|..++||+++||||+++||+|+||+ +.++.++.+..
T Consensus 637 ~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAqGildaGGrNvtis-lqs~tg~~~~~ 715 (929)
T KOG2062|consen 637 VDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQGILDAGGRNVTIS-LQSMTGHTKLD 715 (929)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCCceEEEE-EeccCCCCchH
Confidence 99999999999999999998 699999999999875 899999999999999999999999999 68999999999
Q ss_pred HHHHHHHHHHHhhcccccccccchhHHHhhhhhcccceeeeecCCCcceeeEEee
Q psy6263 798 ALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVRV 852 (913)
Q Consensus 798 alagLl~~l~~~l~~~~~i~~~~h~l~~~l~lA~~Pr~li~~d~~l~~~~v~vrv 852 (913)
|++|+++|+|+| +||+|.||++||+.|+++|++|+||+.+++....
T Consensus 716 ~vvGl~~Flq~W---------yWfPL~~flSLaf~PT~vigln~dLk~Pk~e~~s 761 (929)
T KOG2062|consen 716 AVVGLVVFLQYW---------YWFPLIHFLSLAFTPTTVIGLNEDLKIPKFEYIS 761 (929)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHhcCcceEEEeccccCCcceeeec
Confidence 999999999999 5999999999999999999999999999877754
No 4
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-111 Score=929.92 Aligned_cols=704 Identities=20% Similarity=0.252 Sum_probs=627.8
Q ss_pred HHHHHHhcCCChhccHHHHHHHHHHHHhhccccccCCCchhhhhhhHHHHHHHHhhcCCChhHHHHHHHHHHheeccCcC
Q psy6263 38 NMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNV 117 (913)
Q Consensus 38 ~~lv~~L~e~d~~l~~~AL~~L~~~i~~~t~s~tsvpkplk~l~~~~~~l~~~ye~~~~~~~r~l~a~i~S~l~~~~~~~ 117 (913)
..|.+.|.|...+++.+||+.++..|++-|+ +|++-++.||.+|++-+|+ .|+++|+++|||||.++ +
T Consensus 7 ~~L~all~e~~d~~~~~Al~~In~~vDqlwp----------eIsddl~~Ie~lydd~sf~-~remaaL~~SKvYy~Lg-e 74 (926)
T COG5116 7 RILPALLAELRDGRESEALDVINAHVDQLWP----------EISDDLRYIEALYDDDSFD-PREMAALCLSKVYYVLG-E 74 (926)
T ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHHHHhhh----------hhhchhhHHHHhhccCCCC-HHHHHHHHHHHHHHHHH-h
Confidence 4566777788888999999999999999996 9999999999999999998 79999999999999999 9
Q ss_pred chhhhhhhhhcCCCCCCCCcChHHHHHHHHHHHHHHhc----------cCChhHHHHHHHHHHHHHhccCCHHHHHHHHH
Q psy6263 118 EQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATN----------KYEKPQLLELIEDIIQFDMKHNAEIQACDLLM 187 (913)
Q Consensus 118 ~~~~L~y~L~~~~~~~~~wg~eYvr~l~~~i~~~y~~~----------~~~~~~L~~lv~~iv~~~l~~n~e~eAidlal 187 (913)
|+++++|+|.+++.|+.+.|+.|+++|+.+||+.|... +..++.|..+++.|++.|++.++...+++|++
T Consensus 75 Y~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~~~~~d~iD~~l~~v~e~i~~kc~~~se~~~~lgIa~ 154 (926)
T COG5116 75 YQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYIGGDKDIIDRILDFVLEVIGAKCVDDSEIGYLLGIAA 154 (926)
T ss_pred HHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhhCCCcccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999975 34589999999999999999999999999999
Q ss_pred hhCchhhHHHHHhccChHHHHHHHHhhc-ccCCC-hhhHHHHHHHHHHHhcc--CCHHHHHHHHHhcCCchhHHHHHhcc
Q psy6263 188 EIDHLELLDKHMDVTNYPRVCLYLSNCA-LYVEE-PERSVITNGVLNNYLKF--KEYPRALTLALQLNDEPSVLKIFQLC 263 (913)
Q Consensus 188 E~~~ld~i~~~v~~~~~~ri~~Yl~~~~-~~~~~-~~~~~vl~~~~~iy~~~--~~~~~al~~al~L~d~~~v~~i~~~~ 263 (913)
|.-|+|.|+.++...+..++..|++... ..+.+ .+|.++|+.++++.... ++||....|.+.|||.+.++++|+++
T Consensus 155 eg~rldiie~~l~~~~d~di~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL 234 (926)
T COG5116 155 EGLRLDIIEKYLSDGNDCDIINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKL 234 (926)
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHH
Confidence 9999999999999999999999999763 33444 67999999999998865 48999999999999999999999996
Q ss_pred ---CChhHHHHHHHHHhh--ccccccCCCCCCCchhHHHhhcCccchhhhhhhhhhhcccCCCChHHHHHHHh-hhhcCC
Q psy6263 264 ---EDPVVRKQLAYMAGR--QQITIELPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKTWL-ENIVLR 337 (913)
Q Consensus 264 ---~d~~~~~Qiaf~lar--~~~~~~~~~~~~~~~~l~~il~N~~l~~~f~~l~k~ldil~~k~~~diyk~~L-~~~~~~ 337 (913)
+|.+.--|+|||+.. .|.+++ |+.-+.+-.+|- ...+.|++++.+.+++..|| ++| .
T Consensus 235 ~~end~~l~aqvAFdledsasqe~le-------------il~t~~vA~~~d--~av~~ILSGe~t~ky~~~FLl~~n--n 297 (926)
T COG5116 235 VKENDLLLYAQVAFDLEDSASQEILE-------------ILVTELVAQGYD--QAVMSILSGEFTKKYLGAFLLEKN--N 297 (926)
T ss_pred HhhhhhhhhhhheehhccccCHHHHH-------------hccchhhhcccc--HHHHHHhcCcchhHHHHHHHHhcC--C
Confidence 233344599999987 343443 222222211111 22466888999999999999 455 4
Q ss_pred CCCC----CCCccch--hhhhHHHHHHHHHHhcccCcccccccccCCcccccccchhhHHHHHHhhhhhcccCCCccccc
Q psy6263 338 PTYN----LDVPVDS--ARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPI 411 (913)
Q Consensus 338 ~~~~----~~~~~ds--ar~~lA~~~~naf~naG~~~D~~l~~~~~~~wl~k~~~~~k~sA~aslGlI~~~~~~~~l~~l 411 (913)
.+++ +|++++. .|.|.|.+++|+|||+||++|+|+| +|.+|+.|++||+||+|+||+|+||+|+.++|.++|
T Consensus 298 td~~~Ln~sk~sl~~k~s~fH~avs~AN~fMn~GTs~dsf~r--~Nl~wlgka~nWaKFtatAslGvIH~gn~n~~~~il 375 (926)
T COG5116 298 TDFKFLNSSKSSLARKFSRFHYAVSLANSFMNLGTSNDSFYR--NNLDWLGKASNWAKFTATASLGVIHLGNSNPGYEIL 375 (926)
T ss_pred cceeehhcchhhhhhhhhhhhhHHHHHHHHhhcCCCcchHhh--cCchhhhhcchHhhhhhhhhceeEeeccCCchhHhh
Confidence 4444 2444554 3679999999999999999999999 999999999999999999999999999999999999
Q ss_pred cccccCc---hhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCC-C---HHHHHHHHHHHHHHhccCCCHHHHHHHH
Q psy6263 412 DKYLYTS---EDYIKAGALLALGIVNCGVRNECDPALALLSDYVLND-S---ITLRIGAVLGLGLAYAGTKRQEVVTLLL 484 (913)
Q Consensus 412 ~~yL~s~---~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~-~---~~v~~gA~LGLGlay~Gs~~e~v~e~L~ 484 (913)
.+|||++ +.++++||++|+|+|++|+.++ ..++|.+++.++ + +.+.+|+|||+|++.|||+|++++|.|+
T Consensus 376 ~pYLP~e~ass~~~eGGalyalGLI~Agfgr~---~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~MgSan~eiye~lK 452 (926)
T COG5116 376 KPYLPSEVASSRQKEGGALYALGLIKAGFGRE---DTEYLLEYFLDTEDELTPELAYGVCLGIGLINMGSANREIYEKLK 452 (926)
T ss_pred hccCCcccchhhhccCceeeeehhhccCcCcc---cHHHHHHHhCcccccccHHHHHHHHhhhcchhcccccHHHHHHHH
Confidence 9999964 5699999999999999999886 478888876543 3 4799999999999999999999999999
Q ss_pred Hhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHH
Q psy6263 485 PVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAAL 563 (913)
Q Consensus 485 ~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L 563 (913)
.++. |+....| +|+++|||+++||+..+++++|++|..+ ++||++.|++++|++|+.+|||+.++.+|..|
T Consensus 453 e~l~nD~a~~ge---Aa~~gMGl~mLgt~s~eai~dm~tya~E-----Tqhe~i~Rglgig~aLi~ygrqe~add~I~el 524 (926)
T COG5116 453 ELLKNDRALLGE---AAVYGMGLLMLGTWSVEAIEDMRTYAGE-----TQHERIKRGLGIGFALILYGRQEMADDYINEL 524 (926)
T ss_pred HHHhcchhhhhh---hhhhccceeeecCCCHHHHHHHHHHhcc-----hhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHH
Confidence 9997 5555555 9999999999999999999999999997 78999999999999999999999999999999
Q ss_pred hcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhh
Q psy6263 564 EVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEK 643 (913)
Q Consensus 564 ~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (913)
..+.||+.||++++++|+||+||||..+|+.|||+++++.
T Consensus 525 l~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~---------------------------------------- 564 (926)
T COG5116 525 LYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDG---------------------------------------- 564 (926)
T ss_pred hcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccC----------------------------------------
Confidence 9999999999999999999999999999999999988664
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCc
Q psy6263 644 KDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDL 723 (913)
Q Consensus 644 ~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~ 723 (913)
++|| ||+||++|||+++.. +...+++++.|+.++|+|||+|+++|||+.|+|++...++|.|++++.|+
T Consensus 565 -----nDDV-rRAAViAlGfvc~~D-----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~ 633 (926)
T COG5116 565 -----NDDV-RRAAVIALGFVCCDD-----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDT 633 (926)
T ss_pred -----chHH-HHHHHHheeeeEecC-----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCc
Confidence 4788 999999999999876 66789999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHHh---cCChhHHHHHHHHHHHhhcCCCceecccccCCCCCCChH
Q psy6263 724 DEEVAHNAIFSMGLVGAGTN---NARLATMLRQLAQYH---VKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPV 797 (913)
Q Consensus 724 d~~Vr~~AiiALGlV~aGtn---n~ri~~~Lr~L~~~~---~~d~~~~f~~~iAqGLl~~Gkg~~tLsp~~sd~~~~~~~ 797 (913)
.++|||+|.||+|||.++.| ||++..+.+++-+.. |++..++||+.+|||+..+||+|+||+ +.+-+|.++-.
T Consensus 634 ~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~glaklGA~laqGi~~aGGRNvti~-l~natG~l~~~ 712 (926)
T COG5116 634 NDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHESGLAKLGAVLAQGISEAGGRNVTIS-LRNATGILSAD 712 (926)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhcCCceEEEE-EecccCcccHH
Confidence 99999999999999999999 788888877777653 788889999999999999999999999 68889999999
Q ss_pred HHHHHHHHHHHhhcccccccccchhHHHhhhhhcccceeeeecCCCc
Q psy6263 798 ALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQE 844 (913)
Q Consensus 798 alagLl~~l~~~l~~~~~i~~~~h~l~~~l~lA~~Pr~li~~d~~l~ 844 (913)
+++||.+|+|+| +||+|.||+++++.|+.+|+++.++.
T Consensus 713 ~ivGlv~FlqyW---------YWfPL~hf~SLsf~Pttvigi~~s~~ 750 (926)
T COG5116 713 RIVGLVLFLQYW---------YWFPLIHFVSLSFLPTTVIGIRGSQA 750 (926)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHhhhcCcceeeccccccc
Confidence 999999999999 69999999999999999998776644
No 5
>KOG2005|consensus
Probab=100.00 E-value=2.2e-42 Score=389.31 Aligned_cols=554 Identities=18% Similarity=0.267 Sum_probs=416.3
Q ss_pred hhhhhHHHHHHHHhh--cC---CChhHHHHHHHHHHheeccCcCchhhhhhhhhcCCCCCCCCcChHHHHHHHHHHHHHH
Q psy6263 79 FLRNHYGALKEACEK--MT---DQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWA 153 (913)
Q Consensus 79 ~l~~~~~~l~~~ye~--~~---~~~~r~l~a~i~S~l~~~~~~~~~~~L~y~L~~~~~~~~~wg~eYvr~l~~~i~~~y~ 153 (913)
++|.-...|.+-|.+ .. +.+.+++.-+|++...-|.. ..||..+-+.=+..+.. -+||..--.+=+=-|-
T Consensus 152 YVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNA--E~eAiDlL~Eve~id~l---~~~Vd~~n~~RvclYl 226 (878)
T KOG2005|consen 152 YVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNA--EFEAIDLLMEVEGIDLL---LDYVDEHNYQRVCLYL 226 (878)
T ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccc--hhHHHHHHHHhhhHhHH---HHHhhhhhHHHHHHHH
Confidence 344445555666654 11 22356666677766666655 45676666554432221 1233322211111222
Q ss_pred hc---cCChhHHHHHHHHHHHHHhccCCHHHHHHHHHhhCchhhHHHHHhccChH---HHHHHHHhhcccCCCh-hhHHH
Q psy6263 154 TN---KYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYP---RVCLYLSNCALYVEEP-ERSVI 226 (913)
Q Consensus 154 ~~---~~~~~~L~~lv~~iv~~~l~~n~e~eAidlalE~~~ld~i~~~v~~~~~~---ri~~Yl~~~~~~~~~~-~~~~v 226 (913)
.. --+.|+=..+.+.+..+|+|.|++++|+.+|+..++.+.++++++.+.++ .-|.|++++++...+. +++++
T Consensus 227 ~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l 306 (878)
T KOG2005|consen 227 TSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSEDEEL 306 (878)
T ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCcCHHH
Confidence 21 12445656788889999999999999999999999999999999987764 4566999887765553 35667
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcCCchhHHHHHhc-cCChhHHHHHHHHHhhccccccCCCCCCCchhHHHhhcCccch
Q psy6263 227 TNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQL-CEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHIN 305 (913)
Q Consensus 227 l~~~~~iy~~~~~~~~al~~al~L~d~~~v~~i~~~-~~d~~~~~Qiaf~lar~~~~~~~~~~~~~~~~l~~il~N~~l~ 305 (913)
..++.+- +++++|..+...+.+.+|+.+++||++ ++|....---.-|.|||+ +...+.|.++|
T Consensus 307 ~di~sN~--~Lse~f~~LarELeimepk~pedIyK~hl~~~r~~s~a~vdSarqn--------------la~~fvNgFVn 370 (878)
T KOG2005|consen 307 QDILSNG--KLSEHFLYLARELEIMEPKVPEDIYKSHLEDSRGGSGAGVDSARQN--------------LAATFVNGFVN 370 (878)
T ss_pred HHHHccc--cHHHHHHHHHHHhcccCCCChHHHHHHHHhccccccccCccHHHHH--------------HHHHHHHHHhh
Confidence 6666666 677999999999999999999999998 554431111115566665 67779999999
Q ss_pred hhhhhhhhhhcccCCCChHHHHHHHhhhhcCCCCCCCCCccchhhhhHHHHHHHHHHhcccCccccccccc----CCccc
Q psy6263 306 DHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVED----GNKWM 381 (913)
Q Consensus 306 ~~f~~l~k~ldil~~k~~~diyk~~L~~~~~~~~~~~~~~~dsar~~lA~~~~naf~naG~~~D~~l~~~~----~~~wl 381 (913)
.+| +++.-++.++.. --.|+++| +.+ + + +.++.+-|++.. |..+. =++|+
T Consensus 371 ~Gy---g~Dkl~~~~~~s---~~~w~ykn--ke~-g----~------~sa~aS~G~I~~-------Wnvd~gL~qldkyl 424 (878)
T KOG2005|consen 371 AGY---GQDKLMLVQEGS---RVNWLYKN--KEH-G----M------TSAAASLGMIQL-------WNVDKGLEQLDKYL 424 (878)
T ss_pred ccc---CCCceeccCccc---cCcceeec--ccc-C----c------hHhhhhcchhhe-------ecchhhHHHHHHHh
Confidence 999 999999976620 01255555 443 1 2 223333355543 54332 26689
Q ss_pred ccccchhhHHHHHHhhhhhcc---cCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHH
Q psy6263 382 YKNKQHGMLSAAASLGLIYLW---DVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSIT 458 (913)
Q Consensus 382 ~k~~~~~k~sA~aslGlI~~~---~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~ 458 (913)
|.+.++.|.+|+.++|++..| +.|+++++|.+|+.+++...+.||++|||++|+|+.+| +++.+|++.+.+.+..
T Consensus 425 ys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e--~V~~lL~Pi~~d~~~~ 502 (878)
T KOG2005|consen 425 YSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQRE--EVLELLSPIMFDTKSP 502 (878)
T ss_pred hcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchH--HHHHHHhHHhcCCCCc
Confidence 999999999999999999988 66789999999999999999999999999999999885 7888999999887655
Q ss_pred --HHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCC---CcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCccc
Q psy6263 459 --LRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRK---STPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQ 533 (913)
Q Consensus 459 --v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~---~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~ 533 (913)
+..-|.|+||++|+||||+|+...+++.+++.+ ..-.+.++-+||||++|+|++ +.+++..+.++. ..
T Consensus 503 ~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkq--e~~d~~~e~~~~-----i~ 575 (878)
T KOG2005|consen 503 MEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQ--ESVDAVVETIKA-----IE 575 (878)
T ss_pred hhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhccc--chHHHHHHHHHH-----hh
Confidence 778899999999999999999999999998643 122367799999999999999 788888888886 55
Q ss_pred ccchhhHHHHHH-HHHhcCCcc--cH--HHHHHHHhcCCChhhhhHHHHHHHHHHhccCC----HHHHHHHHhhhhccCC
Q psy6263 534 DGHYSRFLPLAL-AITYLGKKD--AI--DTTLAALEVLPDPFRSMAKMMLKMCAYAGSGD----VLVVQEFLHVCSEHYT 604 (913)
Q Consensus 534 ~e~i~r~~~lgL-gLl~~G~~e--~~--~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn----~~~Iq~LLh~~~~~~~ 604 (913)
+ ++++++.+-+ +|.|.|+|+ .+ +.++..|.++...-.......++|||....|+ .+++|.+=|+. +|+
T Consensus 576 ~-~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l--~yg 652 (878)
T KOG2005|consen 576 G-PIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLL--HYG 652 (878)
T ss_pred h-HHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHH--HcC
Confidence 5 9999998765 999999997 33 66777777776666666668899999999986 46777766666 354
Q ss_pred CCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCccccccc-HHHHHHH
Q psy6263 605 PTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEM-STRIFGQ 683 (913)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em-~~r~~~~ 683 (913)
++.+ ||+.+.++|+..+++ |+| +++++++
T Consensus 653 --------------------------------------------e~~i-RravPLal~llsvSN-----Pq~~vlDtLsk 682 (878)
T KOG2005|consen 653 --------------------------------------------EPHI-RRAVPLALGLLSVSN-----PQVNVLDTLSK 682 (878)
T ss_pred --------------------------------------------CHHH-HHHHHHHHhhhccCC-----CcchHHHHHHH
Confidence 2455 899999999999988 677 9999999
Q ss_pred HhccCChhHHhHhHHHHHHhhcCCCch---hHHHHHHhhc-cCccHHHHHHHHHHHHHhhCCCC
Q psy6263 684 LGRYGEPTVRRAVPLAIALCSMSNPAL---NVIDVLNKYS-HDLDEEVAHNAIFSMGLVGAGTN 743 (913)
Q Consensus 684 Ll~~~~~~vR~~a~LALgL~~as~~~~---~vid~L~~~s-~D~d~~Vr~~AiiALGlV~aGtn 743 (913)
++|++++.+.+.+.+||||+.|||.|. .++++|..|. +|++. -+.+.||+|+++.|-+
T Consensus 683 ~shd~D~eva~naIfamGLiGAGTnNARla~mLrqlaSYyyKd~~~--Lf~vriAQGL~hlGKG 744 (878)
T KOG2005|consen 683 FSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLASYYYKDSKA--LFVVRIAQGLVHLGKG 744 (878)
T ss_pred hccCcchHHHHHHHHHhccccCCcchHHHHHHHHHHHHHHhccchh--HHHHHHHHHHHHhcCC
Confidence 999999999999999999999999987 5566666653 36555 4788899999999977
No 6
>KOG2062|consensus
Probab=100.00 E-value=1.3e-41 Score=387.03 Aligned_cols=537 Identities=17% Similarity=0.186 Sum_probs=369.9
Q ss_pred cCChhHHHHHHHHHHHHHhccCCHHHHHHHHHhhCch---hhHHHHHhccChHHHHHHHHhhcccCCChh-------h-H
Q psy6263 156 KYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHL---ELLDKHMDVTNYPRVCLYLSNCALYVEEPE-------R-S 224 (913)
Q Consensus 156 ~~~~~~L~~lv~~iv~~~l~~n~e~eAidlalE~~~l---d~i~~~v~~~~~~ri~~Yl~~~~~~~~~~~-------~-~ 224 (913)
.++..++.+++-+.|.||+ ++|.+|+.+||.+++. |.-.+|++...+.+|..|+..|+....+|+ | +
T Consensus 54 ~F~er~~AaL~~SKVyy~L--geye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~ 131 (929)
T KOG2062|consen 54 TFPERQLAALLASKVYYYL--GEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLR 131 (929)
T ss_pred CCchhHHHHHHHHHHHHHH--HHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHH
Confidence 5667889999999999999 9999999999999843 555667777778889999998865433322 2 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhcCCchhHHH-HHhccCCh---hHHHHHHHHHhhcccccc-CCCCCCCchhHHHhh
Q psy6263 225 VITNGVLNNYLKFKEYPRALTLALQLNDEPSVLK-IFQLCEDP---VVRKQLAYMAGRQQITIE-LPDEMPDKNDLQIIM 299 (913)
Q Consensus 225 ~vl~~~~~iy~~~~~~~~al~~al~L~d~~~v~~-i~~~~~d~---~~~~Qiaf~lar~~~~~~-~~~~~~~~~~l~~il 299 (913)
.+.+-++.-+..-++|-+++++++.....+.+++ ++++-.+. ....-++.-+..+..|.. +.. .+-..+
T Consensus 132 ~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr------~lv~~y 205 (929)
T KOG2062|consen 132 DIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLR------LLVKTY 205 (929)
T ss_pred HHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHH------HHHHHH
Confidence 4566666666667799999999999999999998 55552211 111222222222222221 100 000000
Q ss_pred cCccchhhhhhhhhhhcccCCCChHHHHHHHhhhhcCCCCCC---CCCccchhhhh------------------------
Q psy6263 300 TNSHINDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYN---LDVPVDSARHN------------------------ 352 (913)
Q Consensus 300 ~N~~l~~~f~~l~k~ldil~~k~~~diyk~~L~~~~~~~~~~---~~~~~dsar~~------------------------ 352 (913)
.+..--.+|.--.+...+-++....++..+.+.++ ...+. .....||+.|.
T Consensus 206 ~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e~--~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de~p~~kii 283 (929)
T KOG2062|consen 206 LKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKED--DLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDEKPMEKII 283 (929)
T ss_pred ccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhcc--hhhhHHHHHHHHhhccCHHHHHHHHHHcccccccccChHHHHH
Confidence 01000000000011111112222222222221110 00000 00111111111
Q ss_pred ------HHHHHHHHHHhcccCcccccccccCCcccccccchhhH----HHH-HHhhhhhcccCCCcc-ccccccccCchh
Q psy6263 353 ------LASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGML----SAA-ASLGLIYLWDVDGGL-TPIDKYLYTSED 420 (913)
Q Consensus 353 ------lA~~~~naf~naG~~~D~~l~~~~~~~wl~k~~~~~k~----sA~-aslGlI~~~~~~~~l-~~l~~yL~s~~~ 420 (913)
...-+-+.|.-..--.|.. .+.+.++-.++ +|+ .+.|+.|.|.....+ .-=-+||-+..+
T Consensus 284 ~ILSGe~tik~~l~FL~~~N~tD~~--------iL~~iK~s~r~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~WlskAtN 355 (929)
T KOG2062|consen 284 SILSGEETIKLYLQFLLRHNNTDLL--------ILEEIKESVRNSVCHTATLIANAFMHAGTTSDTFLRNNLDWLSKATN 355 (929)
T ss_pred HHhcCchHHHHHHHHHHHcCCchHH--------HHHHHHHHHHHhhhhHHHHHHHHHHhcCCcchHHHHhchhHHhhcch
Confidence 1111112222111111111 12222333332 333 688999999665321 111246667889
Q ss_pred hHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcC----CCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCCCcHHH
Q psy6263 421 YIKAGALLALGIVNCGVRNECDPALALLSDYVLN----DSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEV 496 (913)
Q Consensus 421 ~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~----~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~~~~ev 496 (913)
|.|..|..+||+||.|+.+ +++.+|.+||.+ .+.....||++||||+++|++++ +.+.|++.|.+.+. ..+
T Consensus 356 WaKFtAtAsLGvIH~G~~~---~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~-~~~yL~~~Lk~~~~-e~v 430 (929)
T KOG2062|consen 356 WAKFTATASLGVIHRGHEN---QAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG-ITDYLLQQLKTAEN-EVV 430 (929)
T ss_pred Hhhhhhhhhcceeeccccc---hHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc-HHHHHHHHHHhccc-hhh
Confidence 9999999999999999877 489999999987 44678889999999999999988 89999999975442 235
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHH
Q psy6263 497 VAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKM 576 (913)
Q Consensus 497 ~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~ 576 (913)
+-+++|||||+-+||.|+++.+.+.+.+..++ . .....+++|+||++
T Consensus 431 ~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~-----A-vsGEAAgi~MGl~m--------------------------- 477 (929)
T KOG2062|consen 431 RHGACLGLGLAGMGSANEEIYEKLKEVLYNDS-----A-VSGEAAGIAMGLLM--------------------------- 477 (929)
T ss_pred hhhhhhhccchhcccccHHHHHHHHHHHhccc-----h-hhhhHHHHhhhhHh---------------------------
Confidence 66999999999999999999999999887521 1 23334555555555
Q ss_pred HHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHH
Q psy6263 577 MLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQ 656 (913)
Q Consensus 577 ~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~ 656 (913)
+||+|.++|.+|+.++.++.++ .+ .|
T Consensus 478 -------lGt~~~eaiedm~~Ya~ETQHe---------------------------------------------ki-~R- 503 (929)
T KOG2062|consen 478 -------LGTANQEAIEDMLTYAQETQHE---------------------------------------------KI-IR- 503 (929)
T ss_pred -------hCcCcHHHHHHHHHHhhhhhHH---------------------------------------------HH-HH-
Confidence 7899999999999999988762 23 44
Q ss_pred HHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhc-cCccHHHHHHHHHHH
Q psy6263 657 AVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYS-HDLDEEVAHNAIFSM 735 (913)
Q Consensus 657 a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s-~D~d~~Vr~~AiiAL 735 (913)
..++||+|+.+|. .|-+...+..|+.+.||.+||+..+++|+.|+||++.+++++|.+++ +|.+++||+.|++|+
T Consensus 504 -Gl~vGiaL~~ygr---qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVial 579 (929)
T KOG2062|consen 504 -GLAVGIALVVYGR---QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIAL 579 (929)
T ss_pred -HHHHhHHHHHhhh---hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHh
Confidence 4678999999986 45689999999999999999999999999999999999999999995 899999999999999
Q ss_pred HHhhCCCCh--hHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhcCCCcee----cccccCCC-CCCChHHHHHHHHHHHH
Q psy6263 736 GLVGAGTNN--ARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVS----LSPFHTDR-QILNPVALAGLLVVLTS 808 (913)
Q Consensus 736 GlV~aGtnn--~ri~~~Lr~L~~~~~~d~~~~f~~~iAqGLl~~Gkg~~t----Lsp~~sd~-~~~~~~alagLl~~l~~ 808 (913)
|+|+..+.+ |++.++ |+..| ||++|+|+.||+||.|+|+|+.. |.|+.+|. +|++|.|++++.++++-
T Consensus 580 GFVl~~dp~~~~s~V~l---Lses~--N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q 654 (929)
T KOG2062|consen 580 GFVLFRDPEQLPSTVSL---LSESY--NPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQ 654 (929)
T ss_pred eeeEecChhhchHHHHH---Hhhhc--ChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence 999999886 566655 56666 99999999999999999999986 99999999 99999999999999886
Q ss_pred hhc
Q psy6263 809 FLD 811 (913)
Q Consensus 809 ~l~ 811 (913)
+-|
T Consensus 655 ~t~ 657 (929)
T KOG2062|consen 655 QTE 657 (929)
T ss_pred ccc
Confidence 655
No 7
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-38 Score=348.51 Aligned_cols=566 Identities=17% Similarity=0.202 Sum_probs=390.2
Q ss_pred ChHHHHHHHHHHHHHHhc-------cCChhHHHHHHHHHHHHHhccCCHHHHHHHHHhhCc---hhhHHHHHhccChHHH
Q psy6263 138 HEYVRQLEAEIAEEWATN-------KYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDH---LELLDKHMDVTNYPRV 207 (913)
Q Consensus 138 ~eYvr~l~~~i~~~y~~~-------~~~~~~L~~lv~~iv~~~l~~n~e~eAidlalE~~~---ld~i~~~v~~~~~~ri 207 (913)
.++|..|..||.+.-... ..++.++.+++...|.|.+ ++|.+|+-+||.+++ .|.=.+|.+.--|.++
T Consensus 29 n~~vDqlwpeIsddl~~Ie~lydd~sf~~remaaL~~SKvYy~L--geY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~i 106 (926)
T COG5116 29 NAHVDQLWPEISDDLRYIEALYDDDSFDPREMAALCLSKVYYVL--GEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSI 106 (926)
T ss_pred HHHHHHhhhhhhchhhHHHHhhccCCCCHHHHHHHHHHHHHHHH--HhHHHHHHHHHhcCCceeecCCccceehhHHhHH
Confidence 456777777777764332 4567889999999999999 999999999999998 3666777787888899
Q ss_pred HHHHHhhc-ccC-C-----ChhhHHHHHHHHHHHhccCCHHHHHHHHHhcCCchhHHHHHhccCChh-HHH--HHHHHHh
Q psy6263 208 CLYLSNCA-LYV-E-----EPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPV-VRK--QLAYMAG 277 (913)
Q Consensus 208 ~~Yl~~~~-~~~-~-----~~~~~~vl~~~~~iy~~~~~~~~al~~al~L~d~~~v~~i~~~~~d~~-~~~--Qiaf~la 277 (913)
..|+.... .|. + |+-+.-|++.+..-+.+-+++-.++.+++.--.-+.++.+++.-.|.. ..| -+|.-+.
T Consensus 107 em~vh~~~~~y~~~~~d~iD~~l~~v~e~i~~kc~~~se~~~~lgIa~eg~rldiie~~l~~~~d~di~~ylL~Lait~v 186 (926)
T COG5116 107 EMYVHMMDSAYIGGDKDIIDRILDFVLEVIGAKCVDDSEIGYLLGIAAEGLRLDIIEKYLSDGNDCDIINYLLDLAITLV 186 (926)
T ss_pred HHHHHHHHHhhhCCCcccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHh
Confidence 99988653 332 1 123456899999988888899999999998888888888888733322 222 2223333
Q ss_pred hcccccc-CCCCCCCchhHHHhhcCccchhhhhhhhh-hhcccCCCChHHHHHHHhhhhcC--CCCCCCCCccchhhhhH
Q psy6263 278 RQQITIE-LPDEMPDKNDLQIIMTNSHINDHFHSLAR-ELDIMEPKTPEEVYKTWLENIVL--RPTYNLDVPVDSARHNL 353 (913)
Q Consensus 278 r~~~~~~-~~~~~~~~~~l~~il~N~~l~~~f~~l~k-~ldil~~k~~~diyk~~L~~~~~--~~~~~~~~~~dsar~~l 353 (913)
...-|+. + ...+.+++.|..--.+| ++.+ -..+.+......+++...+.|.. -...+ ....||+.+.+
T Consensus 187 ~~~~fr~~i------lr~l~~~~~~~~~pdyf-~v~k~vv~LnDa~~a~~L~~kL~~end~~l~aqvA-Fdledsasqe~ 258 (926)
T COG5116 187 EEEGFRKEI------LRMLAEIGPGKPKPDYF-YVIKAVVYLNDAEKAKALIEKLVKENDLLLYAQVA-FDLEDSASQEI 258 (926)
T ss_pred hhHHHHHHH------HHHHHHhcCCCCCCcEE-EEeEEEEEeccHHHHHHHHHHHHhhhhhhhhhhhe-ehhccccCHHH
Confidence 2222221 0 00112222221101111 1111 11111222222222222211100 00000 22334443322
Q ss_pred H---------HHHHHHHHh--cccCcccccc----cccCCc--cccccc--chhhHHH-----HHHhhhhhcccCCCccc
Q psy6263 354 A---------STFVNAFVN--AGFSRDKLVS----VEDGNK--WMYKNK--QHGMLSA-----AASLGLIYLWDVDGGLT 409 (913)
Q Consensus 354 A---------~~~~naf~n--aG~~~D~~l~----~~~~~~--wl~k~~--~~~k~sA-----~aslGlI~~~~~~~~l~ 409 (913)
- ...=-++|+ .|-.+-++.+ ...|.+ ++.+.| --+||+. +.+.|..|.|..+..+-
T Consensus 259 leil~t~~vA~~~d~av~~ILSGe~t~ky~~~FLl~~nntd~~~Ln~sk~sl~~k~s~fH~avs~AN~fMn~GTs~dsf~ 338 (926)
T COG5116 259 LEILVTELVAQGYDQAVMSILSGEFTKKYLGAFLLEKNNTDFKFLNSSKSSLARKFSRFHYAVSLANSFMNLGTSNDSFY 338 (926)
T ss_pred HHhccchhhhccccHHHHHHhcCcchhHHHHHHHHhcCCcceeehhcchhhhhhhhhhhhhHHHHHHHHhhcCCCcchHh
Confidence 1 111112222 1211112211 112222 333322 2233332 25778999997775432
Q ss_pred -cccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCH---HHHHHHHHHHHHHhccCCCHHHHHHHHH
Q psy6263 410 -PIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSI---TLRIGAVLGLGLAYAGTKRQEVVTLLLP 485 (913)
Q Consensus 410 -~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~---~v~~gA~LGLGlay~Gs~~e~v~e~L~~ 485 (913)
-=-+||-+.++|.|..|..++|.||.|..+ ++.+.|.+||.+... ....||.+|||++++|- .++..|.|+.
T Consensus 339 r~Nl~wlgka~nWaKFtatAslGvIH~gn~n---~~~~il~pYLP~e~ass~~~eGGalyalGLI~Agf-gr~~TeYL~e 414 (926)
T COG5116 339 RNNLDWLGKASNWAKFTATASLGVIHLGNSN---PGYEILKPYLPSEVASSRQKEGGALYALGLIKAGF-GREDTEYLLE 414 (926)
T ss_pred hcCchhhhhcchHhhhhhhhhceeEeeccCC---chhHhhhccCCcccchhhhccCceeeeehhhccCc-CcccHHHHHH
Confidence 113577788999999999999999999887 478999999986543 67789999999999994 4566899998
Q ss_pred hhcCC--CCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHH
Q psy6263 486 VLTDR--KSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAAL 563 (913)
Q Consensus 486 ~L~d~--~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L 563 (913)
.+.++ ....++..+++||+||+-+||.|.++.+.+.+.+...+ . .....+++|+||++
T Consensus 415 ~~~~teDe~~~~l~yG~~LGiGL~~MgSan~eiye~lKe~l~nD~-----a-~~geAa~~gMGl~m-------------- 474 (926)
T COG5116 415 YFLDTEDELTPELAYGVCLGIGLINMGSANREIYEKLKELLKNDR-----A-LLGEAAVYGMGLLM-------------- 474 (926)
T ss_pred HhCcccccccHHHHHHHHhhhcchhcccccHHHHHHHHHHHhcch-----h-hhhhhhhhccceee--------------
Confidence 77643 33456777999999999999999999999988887521 1 23334455555555
Q ss_pred hcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhh
Q psy6263 564 EVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEK 643 (913)
Q Consensus 564 ~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (913)
.||+.+++|.+|+.++.++.++
T Consensus 475 --------------------Lgt~s~eai~dm~tya~ETqhe-------------------------------------- 496 (926)
T COG5116 475 --------------------LGTWSVEAIEDMRTYAGETQHE-------------------------------------- 496 (926)
T ss_pred --------------------ecCCCHHHHHHHHHHhcchhhh--------------------------------------
Confidence 7788899999999999887762
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhc-cC
Q psy6263 644 KDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYS-HD 722 (913)
Q Consensus 644 ~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s-~D 722 (913)
.| .| ..++||+||-+|. +||+.+.+..|+.+.++..||+.+|++|+.|+||++..++.+|.+++ +|
T Consensus 497 -------~i-~R--glgig~aLi~ygr---qe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD 563 (926)
T COG5116 497 -------RI-KR--GLGIGFALILYGR---QEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSD 563 (926)
T ss_pred -------hH-Hh--hhhhhhhHhhhhh---HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeeccc
Confidence 22 44 4578999999986 68999999999999999999999999999999999999999999995 89
Q ss_pred ccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhcCCCcee----cccccCCC-CCCChH
Q psy6263 723 LDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVS----LSPFHTDR-QILNPV 797 (913)
Q Consensus 723 ~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~~~~~~d~~~~f~~~iAqGLl~~Gkg~~t----Lsp~~sd~-~~~~~~ 797 (913)
.+++||++|++|+|+|+....|. +...+.-|++.| |+++|.|+.+|+|+.|+|+|.-. |+|+..|. +|++|.
T Consensus 564 ~nDDVrRAAViAlGfvc~~D~~~-lv~tvelLs~sh--N~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~ 640 (926)
T COG5116 564 GNDDVRRAAVIALGFVCCDDRDL-LVGTVELLSESH--NFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQS 640 (926)
T ss_pred CchHHHHHHHHheeeeEecCcch-hhHHHHHhhhcc--chhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHH
Confidence 99999999999999999988874 234455566666 89999999999999999999864 89999998 899999
Q ss_pred HHHHHHHHHHHhhc
Q psy6263 798 ALAGLLVVLTSFLD 811 (913)
Q Consensus 798 alagLl~~l~~~l~ 811 (913)
|++|+.+++.-+-|
T Consensus 641 AmIa~~mIl~Q~n~ 654 (926)
T COG5116 641 AMIAVGMILMQCNP 654 (926)
T ss_pred HHHHHHHHHhhcCc
Confidence 99999999876643
No 8
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-34 Score=320.17 Aligned_cols=551 Identities=19% Similarity=0.252 Sum_probs=402.7
Q ss_pred hhhhhHHHHHHHHhh---c---CCChhHHHHHHHHHHheeccCcCchhhhhhhhhcCC-CCCCC--CcChHHHHHHHHHH
Q psy6263 79 FLRNHYGALKEACEK---M---TDQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQ-KDVGD--WGHEYVRQLEAEIA 149 (913)
Q Consensus 79 ~l~~~~~~l~~~ye~---~---~~~~~r~l~a~i~S~l~~~~~~~~~~~L~y~L~~~~-~~~~~--wg~eYvr~l~~~i~ 149 (913)
++|--...|.+.|.+ + +|.+.|.++-+|+-+..-|.+ ..|++.+-+.-+. +...+ .-|.|-|-
T Consensus 153 YvrhLa~eI~ev~n~~~e~daps~~dt~~l~l~ivpfflkHNa--E~dAiDlL~Evg~Iekv~~fVd~~n~~Rv------ 224 (881)
T COG5110 153 YVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFLKHNA--EFDAIDLLVEVGGIEKVLDFVDTHNYNRV------ 224 (881)
T ss_pred HHHHHHHHHHHHhcchhhccCCchhHHHHHHHHHhHHHHhccc--chHHHHHHHHhcchhhhhhhhcccchhHH------
Confidence 456666778888863 1 244578899999888888876 5678887776442 11111 12444332
Q ss_pred HHHHhcc---CChhHHHHHHHHHHHHHhccCCHHHHHHHHHhhCchhhHHHHHhcc---ChHHHHHHHHhhcccCCChhh
Q psy6263 150 EEWATNK---YEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVT---NYPRVCLYLSNCALYVEEPER 223 (913)
Q Consensus 150 ~~y~~~~---~~~~~L~~lv~~iv~~~l~~n~e~eAidlalE~~~ld~i~~~v~~~---~~~ri~~Yl~~~~~~~~~~~~ 223 (913)
=.|...+ -+.|.-.++.+.+..+|++.|+..+|+..|++.+..++|.++++.. .+..-|+|++++++..-+.-+
T Consensus 225 clYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~av~~aiRl~~~~~i~e~~~a~~Dp~~kKQ~~YiLArq~~~~e~~d 304 (881)
T COG5110 225 CLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRAVVGAIRLQKSKEIIEYVRAIEDPDYKKQCLYILARQNLYYEASD 304 (881)
T ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccHHHHHHHHHhccChHHHHHHHHHHHhccCCcccCC
Confidence 2233321 2456678889999999999999999999999999999999999864 467789999998876544434
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHhcCCchhHHHHHhc-cCChhHHHHHH-HHHhhccccccCCCCCCCchhHHHhhcC
Q psy6263 224 SVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQL-CEDPVVRKQLA-YMAGRQQITIELPDEMPDKNDLQIIMTN 301 (913)
Q Consensus 224 ~~vl~~~~~iy~~~~~~~~al~~al~L~d~~~v~~i~~~-~~d~~~~~Qia-f~lar~~~~~~~~~~~~~~~~l~~il~N 301 (913)
+++-.++.+- .++++|..++..+.+.+|+.+++||+. ++...-..|.| ...|.|+ +...+.|
T Consensus 305 ee~~dil~Ng--~lsdhf~ylgkELnl~~PkvpedI~K~hl~~~k~~~~~agi~sA~qn--------------la~~fvn 368 (881)
T COG5110 305 EEEKDILSNG--YLSDHFRYLGKELNLDKPKVPEDILKGHLKYDKDTRQLAGIGSANQN--------------LAMGFVN 368 (881)
T ss_pred HHHHHHhcCC--cHHHHHHHHHHHhcCCCCCChHHHHHhhhhccccchhhcccchhhhH--------------HHHhhhc
Confidence 4454444554 456999999999999999999999998 66555567766 5555554 4455778
Q ss_pred ccchhhhhhhhhhhcccCCCChHHHHHHHhhhhcCCCCCCCCCccchhhhhHHHHHHHHHHhcccCcccccccccCCccc
Q psy6263 302 SHINDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWM 381 (913)
Q Consensus 302 ~~l~~~f~~l~k~ldil~~k~~~diyk~~L~~~~~~~~~~~~~~~dsar~~lA~~~~naf~naG~~~D~~l~~~~~~~wl 381 (913)
..+|..| .++..|. -.-+||||. +.+ + +-|+-... |.+.. ...|+=+. .-++++
T Consensus 369 ~~inlgy---~nD~li~--~dd~wiyk~-------k~~-g----liSa~aSI------G~i~~-WN~d~gl~--~Ldkyl 422 (881)
T COG5110 369 DPINLGY---ENDSLIP--LDDEWIYKC-------KVP-G----LISAFASI------GVIES-WNSDKGLE--TLDKYL 422 (881)
T ss_pred cccccCc---cCCeeee--cchhhhhcC-------CCC-C----hhheeecc------hhhhh-hhhHhhHH--HHHHHH
Confidence 8887777 5555554 344777764 322 1 21211111 22211 01122222 235688
Q ss_pred ccccchhhHHHHHHhhhhhccc---CCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCH-
Q psy6263 382 YKNKQHGMLSAAASLGLIYLWD---VDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSI- 457 (913)
Q Consensus 382 ~k~~~~~k~sA~aslGlI~~~~---~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~- 457 (913)
|....+.|.+|+.++|+...+. .++++.+|++|+.+++.-...+|++|+|++++|+.+ ++++++|.|...+.+.
T Consensus 423 y~de~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~--eevl~lL~Pi~~std~p 500 (881)
T COG5110 423 YADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQA--EEVLELLQPIMFSTDSP 500 (881)
T ss_pred hcCcccccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcH--HHHHHHhhhhhcCCCCc
Confidence 8999999999999999977664 456899999999999999999999999999999987 4899999999988776
Q ss_pred -HHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCC---CcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCccc
Q psy6263 458 -TLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRK---STPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQ 533 (913)
Q Consensus 458 -~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~---~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~ 533 (913)
.+.+.|.+.||.+|+||||+|+...+++.+.+.. ....|.++.+||||++|.|.+ +.+++..+.++. ..
T Consensus 501 ie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~--d~~d~v~eti~a-----Ie 573 (881)
T COG5110 501 IEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRK--DQVDDVEETIMA-----IE 573 (881)
T ss_pred HHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHcccc--chhHHHHHHHHH-----hc
Confidence 4567899999999999999999999999886422 234477899999999999998 667777777776 44
Q ss_pred ccchhhHHHHHH-HHHhcCCcc--cHHHHHHHHhcCCC-----hhhhhHHHHHHHHHHhccCCH----HHHHHHHhhhhc
Q psy6263 534 DGHYSRFLPLAL-AITYLGKKD--AIDTTLAALEVLPD-----PFRSMAKMMLKMCAYAGSGDV----LVVQEFLHVCSE 601 (913)
Q Consensus 534 ~e~i~r~~~lgL-gLl~~G~~e--~~~~ll~~L~~~~~-----pi~r~~~~~~lglAyaGTGn~----~~Iq~LLh~~~~ 601 (913)
+ ++++-..+-+ ||-|.|+++ .++.++..+.+-+. .-.-.....++|||....|.. ++.|.+=|..
T Consensus 574 g-~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~m-- 650 (881)
T COG5110 574 G-ALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSM-- 650 (881)
T ss_pred c-hhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHh--
Confidence 5 7888777666 999999998 56667764433211 122223345789999998863 5555544444
Q ss_pred cCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCccccccc-HHHH
Q psy6263 602 HYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEM-STRI 680 (913)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em-~~r~ 680 (913)
||+ ++-+ |+..+.++||...+. |+| ++++
T Consensus 651 hyg--------------------------------------------~~hi-R~~~PLa~gils~Sn-----PQm~vfDt 680 (881)
T COG5110 651 HYG--------------------------------------------SSHI-RSVLPLAYGILSPSN-----PQMNVFDT 680 (881)
T ss_pred hcC--------------------------------------------cHHH-HHHHHHHHhcccCCC-----cchHHHHH
Confidence 333 2344 777888899888776 788 9999
Q ss_pred HHHHhccCChhHHhHhHHHHHHhhcCCCch---hHHHHHHhhcc-CccHHHHHHHHHHHHHhhCCCC
Q psy6263 681 FGQLGRYGEPTVRRAVPLAIALCSMSNPAL---NVIDVLNKYSH-DLDEEVAHNAIFSMGLVGAGTN 743 (913)
Q Consensus 681 ~~~Ll~~~~~~vR~~a~LALgL~~as~~~~---~vid~L~~~s~-D~d~~Vr~~AiiALGlV~aGtn 743 (913)
+++.+|+++-++.+...+||||+.|||.|. +++++|..|.| +++.. ....||+|++..|-+
T Consensus 681 L~r~shd~dl~v~~ntIfamGLiGAGT~NaRlaqlLrQlaSYY~kes~aL--fv~riAQGLl~LGKG 745 (881)
T COG5110 681 LERSSHDGDLNVIINTIFAMGLIGAGTLNARLAQLLRQLASYYYKESKAL--FVLRIAQGLLSLGKG 745 (881)
T ss_pred HHHhccccchhHHHHHHHHhhccccCcchHHHHHHHHHHHHHHhhccchh--hHHHHHHHHHHhcCC
Confidence 999999999999999999999999999886 67777777654 66554 678899999999977
No 9
>KOG1858|consensus
Probab=99.97 E-value=3.9e-30 Score=313.21 Aligned_cols=457 Identities=19% Similarity=0.223 Sum_probs=311.1
Q ss_pred ccchhhHHHHHHhhhhhcccCCCccccccccc----cCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHH
Q psy6263 384 NKQHGMLSAAASLGLIYLWDVDGGLTPIDKYL----YTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITL 459 (913)
Q Consensus 384 ~~~~~k~sA~aslGlI~~~~~~~~l~~l~~yL----~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v 459 (913)
-++|+.|.+..+.|+--. -.++. +=..|+ |......++|-++|+||- ||...- ..--+..||...++.+
T Consensus 815 ~teWp~FhngVa~GLrIs-p~~~~--Ids~WI~fnkp~~~~a~haGfl~glGLn--GhL~~L--~~~~i~qyls~~h~~t 887 (1496)
T KOG1858|consen 815 LTEWPEFHNGVASGLRIS-PFATE--IDSSWIVFNKPKELTAEHAGFLFGLGLN--GHLKAL--NTWHIYQYLSPKHEMT 887 (1496)
T ss_pred cccchhhHHHHHhhcccC-ccccc--ccceeEEEecCCCcchheeheeeecccc--cccccc--cHHHHHHHccCCCcce
Confidence 378999999888887322 11111 113455 356789999999999997 665421 1223456788899999
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHhhc---CC-----CCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcC-
Q psy6263 460 RIGAVLGLGLAYAGTKRQEVVTLLLPVLT---DR-----KSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVS- 530 (913)
Q Consensus 460 ~~gA~LGLGlay~Gs~~e~v~e~L~~~L~---d~-----~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~- 530 (913)
.+|.+|||+.+|.||++.++..+|.-++. .. +.+.-++.||.+|+||+|.||++..+.+.++..+...+..
T Consensus 888 SvgLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~~~e 967 (1496)
T KOG1858|consen 888 SVGLLLGLSASYRGTMDAKITKLLSVHLSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPPNPE 967 (1496)
T ss_pred eHHHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999887774 11 1223356699999999999999999999999998875433
Q ss_pred -cccccchhhHHHHHHHHHhcCCccc---------HHHHHHHHhc-------------------------CCChhhhhHH
Q psy6263 531 -ELQDGHYSRFLPLALAITYLGKKDA---------IDTTLAALEV-------------------------LPDPFRSMAK 575 (913)
Q Consensus 531 -~~~~e~i~r~~~lgLgLl~~G~~e~---------~~~ll~~L~~-------------------------~~~pi~r~~~ 575 (913)
-+..|.+.+++++++||+++|+++. .+.+..-+.. .+-.+..+|+
T Consensus 968 ~~~~rE~Y~laAG~SLGLi~LG~G~~~~g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~dv~~pGA 1047 (1496)
T KOG1858|consen 968 NVLEREGYKLAAGFSLGLINLGRGSNLPGMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLDVTAPGA 1047 (1496)
T ss_pred cchhhhhhhhhcCcccceeeeccCCCCcchhcccchHHHHHHhhccccccccccccccccchhhhccCceeeeecCCccH
Confidence 2566799999999999999999863 2223332320 0112456799
Q ss_pred HHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccC-CCCCCCCchhhhchhhhhhhhh-hhhhhh
Q psy6263 576 MMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATA-GGSTESTPAAAANDKKEKKDKE-KEKDLS 653 (913)
Q Consensus 576 ~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~dv~ 653 (913)
++|+++.|..|+|..+.. .|..-...|..+ --+.+--.+|+.||.+. |+.+-+ +.+|.. .-+++.
T Consensus 1048 viAl~mmflktnn~~Ia~-~l~~p~t~yll~--~vrPd~l~lR~~a~~lImW~~I~p----------~~~wv~~~vp~~i 1114 (1496)
T KOG1858|consen 1048 VIALGMMFLKTNNFEIAN-ALRPPDTRYLLD--FVRPDFLLLRVIARNLIMWDRIKP----------DYDWVKSQVPDVI 1114 (1496)
T ss_pred HHHHHHHHHHhchHHHHh-hcCCCchhhHHh--hcchHHHHHHHHHhhhhHHHhhCc----------hHHHHHhhCCHHH
Confidence 999999999999965443 333222222100 00111123677777666 665543 334432 123331
Q ss_pred hHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCc----------
Q psy6263 654 SMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDL---------- 723 (913)
Q Consensus 654 ~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~---------- 723 (913)
+.++.. . |++..| .+.| .-.++-.|+||++||.+||+++.++.+.|..+..|.
T Consensus 1115 r~~~~~------~---~dvd~~-------tl~q-~~~~~~aGac~slgLrfagt~n~~aknil~s~v~~fl~l~~~P~~~ 1177 (1496)
T KOG1858|consen 1115 REQADL------Q---EDVDLE-------TLSQ-AYVNILAGACFSLGLRFAGTGNLKAKNILNSFVDDFLRLCSLPLKS 1177 (1496)
T ss_pred HHhhhh------h---hhhhhh-------hHHH-HHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHhhccCcc
Confidence 222221 1 443222 2222 123578999999999999999998888887643221
Q ss_pred -c----H----HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhc----CChhHHHHHHHHHHHhhcCCCceecccccCC
Q psy6263 724 -D----E----EVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHV----KNTGHLFMVRIAQGLTHMGKGTVSLSPFHTD 790 (913)
Q Consensus 724 -d----~----~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~~~~~----~d~~~~f~~~iAqGLl~~Gkg~~tLsp~~sd 790 (913)
+ . -+-+..++++.+||||++|.+|.+.+|-|.+... .+-...+++++|+|++++|+|+.|++.
T Consensus 1178 ~~~~~~~~tv~~cl~v~i~sls~vmagSgdleVlr~~r~Lr~~~~~~~~~~yg~~ma~h~alGil~lG~Gr~t~s~---- 1253 (1496)
T KOG1858|consen 1178 NDGRVTAVTVERCLSVLIISLSMVMAGSGDLEVLRRLRFLRSRTSPYGHMNYGAQMATHMALGILFLGGGRYTIST---- 1253 (1496)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhccCCCcccchhHHHHHHhhceeEecCcccccCC----
Confidence 1 1 1224579999999999999888777777776533 333357899999999999999999995
Q ss_pred CCCCChHHHHHHHHHHHHhhcccccccccchh--HHHhhhhhcccceeeeecCC-CcceeeEEeeccceeccccCCCCce
Q psy6263 791 RQILNPVALAGLLVVLTSFLDTKNIILGKSHY--LLYCLVPAMYPRWLVTLDEN-QEPVSVSVRVGQAVDVIGKAGTPKT 867 (913)
Q Consensus 791 ~~~~~~~alagLl~~l~~~l~~~~~i~~~~h~--l~~~l~lA~~Pr~li~~d~~-l~~~~v~vrvg~avd~vg~ag~pk~ 867 (913)
|+.++|.+++.+|+.|+.+.. .+++|. ++|+|++|++||+++++|-| ..|+-+++.|++ |+++
T Consensus 1254 ----s~~sIa~ll~slfp~fP~~~~-Dnr~hlqalR~l~~La~e~r~lip~didt~~~~l~~~~v~~---------k~~~ 1319 (1496)
T KOG1858|consen 1254 ----SNLSIAALLISLFPHFPISPS-DNRYHLQALRHLYVLAVEPRLLIPRDIDTGQPCLAPLNVVQ---------KGTT 1319 (1496)
T ss_pred ----CcHHHHHHHHHhCCCCCCCCc-ccHHHHHHHHHHHHHhcccccccccccccCceEEEeeeEEe---------cccc
Confidence 579999999999999876554 556666 99999999999999999965 556677776542 2221
Q ss_pred eeceeeeecceecccCc---cceecCCCcccc
Q psy6263 868 IAGVHTHTTPVLLAVGE---RAELATDDYVPL 896 (913)
Q Consensus 868 itg~qth~tPvll~~~e---raela~~~~~~~ 896 (913)
--- +|--+|++|..=+ +.-...+.|||+
T Consensus 1320 ~~~-~~~iap~lLP~~~~l~~v~v~g~~yw~~ 1350 (1496)
T KOG1858|consen 1320 LYS-LTEIAPILLPEYSTLSSVSVLGPNYWPV 1350 (1496)
T ss_pred hhh-hhhcCCeeccccccchhhhhcCCccceE
Confidence 111 2467999997522 344445567765
No 10
>KOG1858|consensus
Probab=99.29 E-value=1e-11 Score=153.85 Aligned_cols=175 Identities=23% Similarity=0.326 Sum_probs=126.0
Q ss_pred CCcccccccchhh--HHHHHHhhhhhcccCCCccc--cccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhh
Q psy6263 377 GNKWMYKNKQHGM--LSAAASLGLIYLWDVDGGLT--PIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYV 452 (913)
Q Consensus 377 ~~~wl~k~~~~~k--~sA~aslGlI~~~~~~~~l~--~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L 452 (913)
+.+||--|+.-.- -.|-.-+|+-..||.. +++ .+.+||...++.+..|.++|++..|.|+++. ++..+|+-||
T Consensus 839 ds~WI~fnkp~~~~a~haGfl~glGLnGhL~-~L~~~~i~qyls~~h~~tSvgLLlGlsaS~~GtmD~--ki~Kllsvhl 915 (1496)
T KOG1858|consen 839 DSSWIVFNKPKELTAEHAGFLFGLGLNGHLK-ALNTWHIYQYLSPKHEMTSVGLLLGLSASYRGTMDA--KITKLLSVHL 915 (1496)
T ss_pred cceeEEEecCCCcchheeheeeecccccccc-cccHHHHHHHccCCCcceeHHHHhhhhHhhcCccch--hHHHHHHHHH
Confidence 4668865544311 1122234444466765 444 4567888899999999999999999999974 7889999998
Q ss_pred cC----------CCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCC-C----CcHH-HHHHHHHHHHHHHhcCCCH--
Q psy6263 453 LN----------DSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDR-K----STPE-VVAFAAVAASLIYVGTGYH-- 514 (913)
Q Consensus 453 ~~----------~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~-~----~~~e-v~~~A~laLGLi~lGs~n~-- 514 (913)
.. -+..+|.+|++|+|+.|.||++..+.+.|+..+... . ..-| ...+|+++||||++|.|+.
T Consensus 916 ~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~~~e~~~~rE~Y~laAG~SLGLi~LG~G~~~~ 995 (1496)
T KOG1858|consen 916 SALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPPNPENVLEREGYKLAAGFSLGLINLGRGSNLP 995 (1496)
T ss_pred hhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCCCcccchhhhhhhhhcCcccceeeeccCCCCc
Confidence 63 125699999999999999999999999999887521 1 1222 5669999999999999853
Q ss_pred -----HHHHHHHHHHHcC---C----------------cCcccc-cchhhHHHHHHHHHhcCCcc
Q psy6263 515 -----EVASAILQTLIEL---P----------------VSELQD-GHYSRFLPLALAITYLGKKD 554 (913)
Q Consensus 515 -----~v~~~lL~~l~~~---~----------------~~~~~~-e~i~r~~~lgLgLl~~G~~e 554 (913)
...++++.++.+. + +-.+.+ +.-+.++++++|++|+.+++
T Consensus 996 g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~dv~~pGAviAl~mmflktnn 1060 (1496)
T KOG1858|consen 996 GMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLDVTAPGAVIALGMMFLKTNN 1060 (1496)
T ss_pred chhcccchHHHHHHhhccccccccccccccccchhhhccCceeeeecCCccHHHHHHHHHHHhch
Confidence 4577888888821 0 000111 12355999999999998875
No 11
>PRK09687 putative lyase; Provisional
Probab=98.82 E-value=7.5e-07 Score=97.96 Aligned_cols=82 Identities=18% Similarity=0.127 Sum_probs=43.1
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQ 756 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~~ 756 (913)
+...+..++.+.++.||..+..+||-+ +...++..|.+...|.+ |+..|+-|||-+|- ++....|.++..
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----~~a~p~L~~l~~ 262 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIGLALR----KDKRVLSVLIKELKKGT--VGDLIIEAAGELGD----KTLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHcc----CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----HhHHHHHHHHHh
Confidence 344455555666666666666666654 22456666666655544 45566666666653 234444444443
Q ss_pred HhcCChhHHHHHH
Q psy6263 757 YHVKNTGHLFMVR 769 (913)
Q Consensus 757 ~~~~d~~~~f~~~ 769 (913)
-. .|+.++.-++
T Consensus 263 ~~-~d~~v~~~a~ 274 (280)
T PRK09687 263 KF-DDNEIITKAI 274 (280)
T ss_pred hC-CChhHHHHHH
Confidence 12 2444444443
No 12
>PRK09687 putative lyase; Provisional
Probab=98.75 E-value=3.5e-06 Score=92.66 Aligned_cols=245 Identities=13% Similarity=0.088 Sum_probs=144.7
Q ss_pred ccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC---HHHHHHH
Q psy6263 407 GLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR---QEVVTLL 483 (913)
Q Consensus 407 ~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~---e~v~e~L 483 (913)
....|.++|.+.+..++..|+.+|| ..| . +.++..+...+.+.++.+|..|+-+||. +|... .++...|
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~--~~~--~--~~~~~~l~~ll~~~d~~vR~~A~~aLg~--lg~~~~~~~~a~~~L 95 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQ--LRG--G--QDVFRLAIELCSSKNPIERDIGADILSQ--LGMAKRCQDNVFNIL 95 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHH--hcC--c--chHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCccchHHHHHHH
Confidence 4556667777777778888888776 222 1 3466777777777778888888888777 44332 4567777
Q ss_pred HHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHH
Q psy6263 484 LPVLT-DRKSTPEVVAFAAVAASLIYVGTGYH----EVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDT 558 (913)
Q Consensus 484 ~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~----~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ 558 (913)
...+. |++ .+|...|+-+||- +|+... ++++.+...+.+. +. .+++.++.+|| .+|.++.++.
T Consensus 96 ~~l~~~D~d--~~VR~~A~~aLG~--~~~~~~~~~~~a~~~l~~~~~D~-----~~-~VR~~a~~aLg--~~~~~~ai~~ 163 (280)
T PRK09687 96 NNLALEDKS--ACVRASAINATGH--RCKKNPLYSPKIVEQSQITAFDK-----ST-NVRFAVAFALS--VINDEAAIPL 163 (280)
T ss_pred HHHHhcCCC--HHHHHHHHHHHhc--ccccccccchHHHHHHHHHhhCC-----CH-HHHHHHHHHHh--ccCCHHHHHH
Confidence 76643 333 3466677777774 454432 2233333333331 12 34444333443 4566677777
Q ss_pred HHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhc
Q psy6263 559 TLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAAN 638 (913)
Q Consensus 559 ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (913)
++..+. ++++.+|+.++.++|-. +.++..++..|.....+.
T Consensus 164 L~~~L~-d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~------------------------------------ 204 (280)
T PRK09687 164 LINLLK-DPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDK------------------------------------ 204 (280)
T ss_pred HHHHhc-CCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCC------------------------------------
Confidence 777665 56777888777665533 556667777776666321
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHh
Q psy6263 639 DKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNK 718 (913)
Q Consensus 639 ~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~ 718 (913)
+++| |..|+.+||- + |.+.+...+-..+++++ +|..++-|||=+ |+| .++..|.+
T Consensus 205 ----------~~~V-R~~A~~aLg~--~------~~~~av~~Li~~L~~~~--~~~~a~~ALg~i--g~~--~a~p~L~~ 259 (280)
T PRK09687 205 ----------NEEI-RIEAIIGLAL--R------KDKRVLSVLIKELKKGT--VGDLIIEAAGEL--GDK--TLLPVLDT 259 (280)
T ss_pred ----------ChHH-HHHHHHHHHc--c------CChhHHHHHHHHHcCCc--hHHHHHHHHHhc--CCH--hHHHHHHH
Confidence 2344 5555555542 2 23344555555555544 666666666665 333 56666766
Q ss_pred hcc-CccHHHHHHHHHHH
Q psy6263 719 YSH-DLDEEVAHNAIFSM 735 (913)
Q Consensus 719 ~s~-D~d~~Vr~~AiiAL 735 (913)
+.+ +.|..|++-|+-++
T Consensus 260 l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 260 LLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHhhCCChhHHHHHHHHH
Confidence 664 67778877776554
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.63 E-value=7.9e-06 Score=103.56 Aligned_cols=287 Identities=16% Similarity=0.060 Sum_probs=175.6
Q ss_pred chhhHHHHHHhhhhhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHH
Q psy6263 386 QHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVL 465 (913)
Q Consensus 386 ~~~k~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~L 465 (913)
.|.++.++.+| -+..+..|.++|..+++.++..|+.+||-+. . +.++..|...|.+++..+|..|+-
T Consensus 608 ~~~~~~~~~~l-------~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~----~--~~~~~~L~~aL~D~d~~VR~~Aa~ 674 (897)
T PRK13800 608 PSPRILAVLAL-------DAPSVAELAPYLADPDPGVRRTAVAVLTETT----P--PGFGPALVAALGDGAAAVRRAAAE 674 (897)
T ss_pred chHHHHHHHhc-------cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc----c--hhHHHHHHHHHcCCCHHHHHHHHH
Confidence 45556555444 1234556677888888888888888888653 1 346677778888888888888888
Q ss_pred HHHHHhccCCCHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhh-HHHHH
Q psy6263 466 GLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSR-FLPLA 544 (913)
Q Consensus 466 GLGlay~Gs~~e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r-~~~lg 544 (913)
+|+-+--.... ...|...|.++ +.++...|+-+||-+- .++. ..+++.+.+. + ...| .++-+
T Consensus 675 aL~~l~~~~~~---~~~L~~~L~~~--d~~VR~~A~~aL~~~~--~~~~---~~l~~~L~D~------d-~~VR~~Av~a 737 (897)
T PRK13800 675 GLRELVEVLPP---APALRDHLGSP--DPVVRAAALDVLRALR--AGDA---ALFAAALGDP------D-HRVRIEAVRA 737 (897)
T ss_pred HHHHHHhccCc---hHHHHHHhcCC--CHHHHHHHHHHHHhhc--cCCH---HHHHHHhcCC------C-HHHHHHHHHH
Confidence 88764211111 23455555543 2356667777777643 3332 3455555441 2 3344 33334
Q ss_pred HHHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCccccccccccccccccc
Q psy6263 545 LAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASAT 624 (913)
Q Consensus 545 LgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (913)
||- ++. .+.++ .+..++++.+|..++- +++..|++....+..|++++.+.
T Consensus 738 L~~--~~~---~~~l~-~~l~D~~~~VR~~aa~--aL~~~~~~~~~~~~~L~~ll~D~---------------------- 787 (897)
T PRK13800 738 LVS--VDD---VESVA-GAATDENREVRIAVAK--GLATLGAGGAPAGDAVRALTGDP---------------------- 787 (897)
T ss_pred Hhc--ccC---cHHHH-HHhcCCCHHHHHHHHH--HHHHhccccchhHHHHHHHhcCC----------------------
Confidence 443 333 33343 4456778888876544 56667776665566666655321
Q ss_pred CCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhh
Q psy6263 625 AGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCS 704 (913)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~ 704 (913)
++.+ |..++.+||-. |. ++.+...+...+.+.++.||++++-|||-+.
T Consensus 788 ------------------------d~~V-R~aA~~aLg~~----g~---~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 788 ------------------------DPLV-RAAALAALAEL----GC---PPDDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred ------------------------CHHH-HHHHHHHHHhc----CC---cchhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 2344 55555555532 21 2223344566678888999999999998763
Q ss_pred cCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q psy6263 705 MSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQG 773 (913)
Q Consensus 705 as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~~~~~~d~~~~f~~~iAqG 773 (913)
....++.|.+...|.+..||+.|+.|||-+ ..++.....|.... ...|+.++-.+..|++
T Consensus 836 ----~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~~~a~~~L~~al--~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 836 ----ADVAVPALVEALTDPHLDVRKAAVLALTRW---PGDPAARDALTTAL--TDSDADVRAYARRALA 895 (897)
T ss_pred ----ccchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHH--hCCCHHHHHHHHHHHh
Confidence 345677888888899999999999999886 23444555555444 2567777777766654
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.46 E-value=1.1e-05 Score=102.13 Aligned_cols=282 Identities=18% Similarity=0.064 Sum_probs=184.6
Q ss_pred HHHHHHHhcccCc-ccccccccCCcccccccchhhHHHHHHhhhhhcccCCCccccccccccCchhhHHHHHHHHHHHHh
Q psy6263 356 TFVNAFVNAGFSR-DKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVN 434 (913)
Q Consensus 356 ~~~naf~naG~~~-D~~l~~~~~~~wl~k~~~~~k~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~ 434 (913)
.-..+++..+... +.++. .+.......+..|..+||-+ |+ .+++..|...|..++..++..|+.+|+-+.
T Consensus 610 ~~~~~~~~l~~~~~~~L~~------~L~D~d~~VR~~Av~~L~~~--~~-~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~ 680 (897)
T PRK13800 610 PRILAVLALDAPSVAELAP------YLADPDPGVRRTAVAVLTET--TP-PGFGPALVAALGDGAAAVRRAAAEGLRELV 680 (897)
T ss_pred HHHHHHHhccchhHHHHHH------HhcCCCHHHHHHHHHHHhhh--cc-hhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3335666664442 33332 44455566778888888865 33 346677778888888999999999998773
Q ss_pred cCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCH
Q psy6263 435 CGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYH 514 (913)
Q Consensus 435 aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~ 514 (913)
-.. . ....|...|.++++.+|..|+-.||....+. . ..|...+.|++ .+++..|+.+||- ++.
T Consensus 681 ~~~-~----~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~--~---~~l~~~L~D~d--~~VR~~Av~aL~~--~~~--- 743 (897)
T PRK13800 681 EVL-P----PAPALRDHLGSPDPVVRAAALDVLRALRAGD--A---ALFAAALGDPD--HRVRIEAVRALVS--VDD--- 743 (897)
T ss_pred hcc-C----chHHHHHHhcCCCHHHHHHHHHHHHhhccCC--H---HHHHHHhcCCC--HHHHHHHHHHHhc--ccC---
Confidence 211 1 1235667788889999999999999865432 2 35666676654 4567788889885 333
Q ss_pred HHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCccc--HHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCH-HH
Q psy6263 515 EVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDA--IDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDV-LV 591 (913)
Q Consensus 515 ~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~--~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~-~~ 591 (913)
.+.++..+.+. +. .+++.++-+|| ..|.++. .+.+. .+..+++|..|..++-++| -. |+. ..
T Consensus 744 --~~~l~~~l~D~-----~~-~VR~~aa~aL~--~~~~~~~~~~~~L~-~ll~D~d~~VR~aA~~aLg--~~--g~~~~~ 808 (897)
T PRK13800 744 --VESVAGAATDE-----NR-EVRIAVAKGLA--TLGAGGAPAGDAVR-ALTGDPDPLVRAAALAALA--EL--GCPPDD 808 (897)
T ss_pred --cHHHHHHhcCC-----CH-HHHHHHHHHHH--HhccccchhHHHHH-HHhcCCCHHHHHHHHHHHH--hc--CCcchh
Confidence 23455555442 22 45555555555 4455443 45544 5556778999998766543 33 333 23
Q ss_pred HHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcc
Q psy6263 592 VQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEE 671 (913)
Q Consensus 592 Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ 671 (913)
+..+++.+.+. +..+ |+.|+.+||-
T Consensus 809 ~~~l~~aL~d~----------------------------------------------d~~V-R~~Aa~aL~~-------- 833 (897)
T PRK13800 809 VAAATAALRAS----------------------------------------------AWQV-RQGAARALAG-------- 833 (897)
T ss_pred HHHHHHHhcCC----------------------------------------------ChHH-HHHHHHHHHh--------
Confidence 45555544321 2345 7777777763
Q ss_pred cccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHH
Q psy6263 672 IGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMG 736 (913)
Q Consensus 672 ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALG 736 (913)
++.+.+...+..++.+.++.||+.+..|||-+ .....+.+.|.+...|.|.+||+.|.-||+
T Consensus 834 l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 834 AAADVAVPALVEALTDPHLDVRKAAVLALTRW---PGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred ccccchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 23555678888899999999999999999986 224467777777777999999999999886
No 15
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.73 E-value=0.0042 Score=72.04 Aligned_cols=21 Identities=33% Similarity=0.161 Sum_probs=10.0
Q ss_pred HHhccCChhHHhHhHHHHHHh
Q psy6263 683 QLGRYGEPTVRRAVPLAIALC 703 (913)
Q Consensus 683 ~Ll~~~~~~vR~~a~LALgL~ 703 (913)
..+++.++.||+++.-+++++
T Consensus 185 ~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 185 LYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHcCCCHHHHHHHHHHHHHc
Confidence 334444455555544444444
No 16
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.71 E-value=3.3e-05 Score=57.96 Aligned_cols=30 Identities=57% Similarity=0.965 Sum_probs=25.3
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHhhcCCC
Q psy6263 462 GAVLGLGLAYAGTKRQEVVTLLLPVLTDRK 491 (913)
Q Consensus 462 gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~ 491 (913)
||++|||++|+||+|+++++.|.|++.|++
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~ 30 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTS 30 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSS
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 789999999999999999999999998765
No 17
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.32 E-value=0.035 Score=64.51 Aligned_cols=212 Identities=17% Similarity=0.101 Sum_probs=113.3
Q ss_pred HHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy6263 444 ALALLSDYVL-NDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQ 522 (913)
Q Consensus 444 ~l~lL~~~L~-~~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~ 522 (913)
++..|...+. +.+.-++..++++++- ..+..+.+.|+..+.|+. ..+..+++-+||- +| +..+...++.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~----~~~~~~~~~L~~~L~d~~--~~vr~aaa~ALg~--i~--~~~a~~~L~~ 124 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA----QEDALDLRSVLAVLQAGP--EGLCAGIQAALGW--LG--GRQAEPWLEP 124 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc----cCChHHHHHHHHHhcCCC--HHHHHHHHHHHhc--CC--chHHHHHHHH
Confidence 5667777773 4445566666666542 334455778888776543 2255577777774 23 4466666776
Q ss_pred HHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhcc
Q psy6263 523 TLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEH 602 (913)
Q Consensus 523 ~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~ 602 (913)
.+.+ .+ +..|.+++ +.+...+.+..+.++..|. +.+|.+|..++-++ .+.|.. ..+..|..... +
T Consensus 125 ~L~~------~~-p~vR~aal--~al~~r~~~~~~~L~~~L~-d~d~~Vra~A~raL--G~l~~~--~a~~~L~~al~-d 189 (410)
T TIGR02270 125 LLAA------SE-PPGRAIGL--AALGAHRHDPGPALEAALT-HEDALVRAAALRAL--GELPRR--LSESTLRLYLR-D 189 (410)
T ss_pred HhcC------CC-hHHHHHHH--HHHHhhccChHHHHHHHhc-CCCHHHHHHHHHHH--Hhhccc--cchHHHHHHHc-C
Confidence 6643 23 55665544 2222233444555555554 67777777655543 444443 33444433322 1
Q ss_pred CCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHH
Q psy6263 603 YTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFG 682 (913)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~ 682 (913)
. ++.| |+.|+.+++ .+ | .+.+...+.
T Consensus 190 ~---------------------------------------------~~~V-R~aA~~al~--~l--G----~~~A~~~l~ 215 (410)
T TIGR02270 190 S---------------------------------------------DPEV-RFAALEAGL--LA--G----SRLAWGVCR 215 (410)
T ss_pred C---------------------------------------------CHHH-HHHHHHHHH--Hc--C----CHhHHHHHH
Confidence 1 2455 665554443 22 2 233333334
Q ss_pred HHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhhC
Q psy6263 683 QLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGA 740 (913)
Q Consensus 683 ~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~a 740 (913)
.+.....+..+.....++++. +...+++.|..+++|+. |+..++.|+|.++-
T Consensus 216 ~~~~~~g~~~~~~l~~~lal~----~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 216 RFQVLEGGPHRQRLLVLLAVA----GGPDAQAWLRELLQAAA--TRREALRAVGLVGD 267 (410)
T ss_pred HHHhccCccHHHHHHHHHHhC----CchhHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence 322222333433333344333 33478888888877755 78888888887653
No 18
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.28 E-value=0.1 Score=58.66 Aligned_cols=55 Identities=24% Similarity=0.177 Sum_probs=36.2
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHH
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMG 736 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALG 736 (913)
...|...++..+..+|..++.++|-.. .......|..+.++.+..++..+..+++
T Consensus 215 ~~~l~~~~~~~~~~vr~~~~~~l~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 215 ADLLVKALSDESLEVRKAALLALGEIG----DEEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhcccC----cchhHHHHHHHHhccchHHHHHHHHHhc
Confidence 455666667777777777777777663 3455566666666677777766666666
No 19
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.06 E-value=0.038 Score=62.13 Aligned_cols=89 Identities=24% Similarity=0.262 Sum_probs=63.7
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQ 756 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~~ 756 (913)
+...+..++...+..||+.++.+||.+...+ ..+.+.+.+..+|.+..||..++.++|-++......-+...++
T Consensus 181 ~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~l~~~l~---- 254 (335)
T COG1413 181 AIPLLIELLEDEDADVRRAAASALGQLGSEN--VEAADLLVKALSDESLEVRKAALLALGEIGDEEAVDALAKALE---- 254 (335)
T ss_pred hhHHHHHHHhCchHHHHHHHHHHHHHhhcch--hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhHHHHHHHHh----
Confidence 3444556666777899999999999997654 5677888888889999999999999999998654433322211
Q ss_pred HhcCChhHHHHHHHHHH
Q psy6263 757 YHVKNTGHLFMVRIAQG 773 (913)
Q Consensus 757 ~~~~d~~~~f~~~iAqG 773 (913)
..++........+.|
T Consensus 255 --~~~~~~~~~~~~~~~ 269 (335)
T COG1413 255 --DEDVILALLAAAALG 269 (335)
T ss_pred --ccchHHHHHHHHHhc
Confidence 344555556666555
No 20
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.03 E-value=0.00088 Score=50.30 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=24.6
Q ss_pred HhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHH
Q psy6263 695 AVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAH 729 (913)
Q Consensus 695 ~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~ 729 (913)
++++||||+++|+.+.++++.|.++.+|.+.+++|
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~~~~~~ 35 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTSNEMIQ 35 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSSHHHHH
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhccccccC
Confidence 46777788887777777777777777777776654
No 21
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.76 E-value=0.01 Score=52.77 Aligned_cols=86 Identities=21% Similarity=0.153 Sum_probs=61.6
Q ss_pred HHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHh
Q psy6263 679 RIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYH 758 (913)
Q Consensus 679 r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~~~~ 758 (913)
.++..|.+..++.+|..++.+||- -....++..|.++..|.+..||+.|+.|||-++ +++....|.++...
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~----~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----~~~~~~~L~~~l~~- 73 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGE----LGDPEAIPALIELLKDEDPMVRRAAARALGRIG----DPEAIPALIKLLQD- 73 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHC----CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----HHHTHHHHHHHHTC-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHcC-
Confidence 345666688899999999888882 345688888888888999999999999999874 45555555554421
Q ss_pred cCChhHHHHHHHHHH
Q psy6263 759 VKNTGHLFMVRIAQG 773 (913)
Q Consensus 759 ~~d~~~~f~~~iAqG 773 (913)
..+..++..+.-|+|
T Consensus 74 ~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 74 DDDEVVREAAAEALG 88 (88)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhcC
Confidence 234455666666665
No 22
>KOG2171|consensus
Probab=96.72 E-value=1.8 Score=54.96 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=86.9
Q ss_pred ccccccccccCchhhHHHHHHHHHHHHhcCCCCC----chhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC------
Q psy6263 407 GLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNE----CDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR------ 476 (913)
Q Consensus 407 ~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e----~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~------ 476 (913)
.++.+..+|.|.+-..|..|++|+|.+.-|..+- -+.++....++|.++++.||.+||.++|-.-..-+-
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 4455566777899999999999999998776432 256666777778899999999999999995332221
Q ss_pred -HHHHHHHHHhhcCCCCcHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHcCCc---CcccccchhhHHHHHHHHHhcC
Q psy6263 477 -QEVVTLLLPVLTDRKSTPEVVAFA-AVAASLIYVGTGYHEVASAILQTLIELPV---SELQDGHYSRFLPLALAITYLG 551 (913)
Q Consensus 477 -e~v~e~L~~~L~d~~~~~ev~~~A-~laLGLi~lGs~n~~v~~~lL~~l~~~~~---~~~~~e~i~r~~~lgLgLl~~G 551 (913)
+.+...|...+. +..+.+|...| +-.++ |.--|..++++.-|.-++++.- -+-..-.+...++.+||-+..-
T Consensus 429 ~e~l~~aL~~~ld-~~~~~rV~ahAa~al~n--f~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 429 HERLPPALIALLD-STQNVRVQAHAAAALVN--FSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHhccHHHHHHhc-ccCchHHHHHHHHHHHH--HHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 122223333333 33344555533 33333 3444555665544444443100 0001102333445567777655
Q ss_pred CcccHHHHHH
Q psy6263 552 KKDAIDTTLA 561 (913)
Q Consensus 552 ~~e~~~~ll~ 561 (913)
.++......+
T Consensus 506 A~~~F~pY~d 515 (1075)
T KOG2171|consen 506 AQEKFIPYFD 515 (1075)
T ss_pred HhhhhHhHHH
Confidence 5554433333
No 23
>KOG0567|consensus
Probab=96.63 E-value=0.11 Score=56.00 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=42.5
Q ss_pred CChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhhC
Q psy6263 688 GEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGA 740 (913)
Q Consensus 688 ~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~a 740 (913)
-+|.||.-++.|||-+ ++.+.++.|.+|++|.++-||....+|+-|.--
T Consensus 232 E~pMVRhEaAeALGaI----a~e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 232 EHPMVRHEAAEALGAI----ADEDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred cchHHHHHHHHHHHhh----cCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 4577899999999988 467899999999999999999999999987654
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.41 E-value=0.014 Score=51.98 Aligned_cols=74 Identities=30% Similarity=0.335 Sum_probs=56.0
Q ss_pred hhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhc-cCccHHHH
Q psy6263 650 KDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYS-HDLDEEVA 728 (913)
Q Consensus 650 ~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s-~D~d~~Vr 728 (913)
+.+ +..++-+|| .++.+.+...+-.++++.++.||+.++.+||-+. ..++++.|.+.. +|.+..||
T Consensus 14 ~~v-r~~a~~~L~--------~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----~~~~~~~L~~~l~~~~~~~vr 80 (88)
T PF13646_consen 14 PQV-RAEAARALG--------ELGDPEAIPALIELLKDEDPMVRRAAARALGRIG----DPEAIPALIKLLQDDDDEVVR 80 (88)
T ss_dssp HHH-HHHHHHHHH--------CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----HHHTHHHHHHHHTC-SSHHHH
T ss_pred HHH-HHHHHHHHH--------HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHcCCCcHHHH
Confidence 445 666666666 3345556666777779999999999999999773 567888888866 45677889
Q ss_pred HHHHHHHH
Q psy6263 729 HNAIFSMG 736 (913)
Q Consensus 729 ~~AiiALG 736 (913)
..|+-|||
T Consensus 81 ~~a~~aL~ 88 (88)
T PF13646_consen 81 EAAAEALG 88 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhcC
Confidence 99999887
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.01 E-value=0.98 Score=53.77 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=49.0
Q ss_pred cHHHHHHHHhccCChhHHhHhHHHHHHhhcCC-CchhHHHHH-HhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q psy6263 676 MSTRIFGQLGRYGEPTVRRAVPLAIALCSMSN-PALNVIDVL-NKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQ 753 (913)
Q Consensus 676 m~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~-~~~~vid~L-~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~ 753 (913)
.+...+..++.+.++++|+.+.-+|..+...+ +...-.... ..+..|.+..||..++=.+..+. ++..+..++..
T Consensus 267 ~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~---~~~n~~~Il~e 343 (526)
T PF01602_consen 267 KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLA---NESNVKEILDE 343 (526)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred hhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcc---cccchhhHHHH
Confidence 45666777788899999999888888887666 222211111 11224788888877755444443 34445556777
Q ss_pred HHHHh
Q psy6263 754 LAQYH 758 (913)
Q Consensus 754 L~~~~ 758 (913)
|.+|.
T Consensus 344 L~~~l 348 (526)
T PF01602_consen 344 LLKYL 348 (526)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 26
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=95.80 E-value=1.9 Score=58.91 Aligned_cols=272 Identities=14% Similarity=0.052 Sum_probs=159.8
Q ss_pred cccccchhhHHHHHHhhhhhcccC--------CCccccccccccCchhhHHHHHHHHHHHHhcCCCCCc------hhHHH
Q psy6263 381 MYKNKQHGMLSAAASLGLIYLWDV--------DGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNEC------DPALA 446 (913)
Q Consensus 381 l~k~~~~~k~sA~aslGlI~~~~~--------~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~------d~~l~ 446 (913)
+...+.-.+-.|+..+|.+..++. .+|+..|-+.|.+++..++--|+.++|-+.++. .++ ..++.
T Consensus 455 L~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~-~qir~iV~~aGAIp 533 (2102)
T PLN03200 455 LGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS-EDIRACVESAGAVP 533 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHHCCCHH
Confidence 333444455566677777766543 257777788888888999999999999876532 111 12455
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHH-hcCCC---------HHH
Q psy6263 447 LLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIY-VGTGY---------HEV 516 (913)
Q Consensus 447 lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~-lGs~n---------~~v 516 (913)
.|.+.|.+.+..++.-|+-+|.-.-.+. +.+....|...+..++.. +...+.-++|-+. ++.++ ...
T Consensus 534 pLV~LL~sgd~~~q~~Aa~AL~nLi~~~-d~~~I~~Lv~LLlsdd~~--~~~~aL~vLgnIlsl~~~~d~~~~g~~~~gg 610 (2102)
T PLN03200 534 ALLWLLKNGGPKGQEIAAKTLTKLVRTA-DAATISQLTALLLGDLPE--SKVHVLDVLGHVLSVASLEDLVREGSAANDA 610 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhcc-chhHHHHHHHHhcCCChh--HHHHHHHHHHHHHhhcchhHHHHHhhhcccc
Confidence 6677788888888888888888775543 445556666666533322 2223344555442 23322 234
Q ss_pred HHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHH---------HHHHHHhcCCChhhhhHHHHHHHHHHhccC
Q psy6263 517 ASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAID---------TTLAALEVLPDPFRSMAKMMLKMCAYAGSG 587 (913)
Q Consensus 517 ~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~---------~ll~~L~~~~~pi~r~~~~~~lglAyaGTG 587 (913)
++.|.+.+... ++.+.+-++-.|+=++-|+++.++ .++..|......+ +..++++++-.+.+ |
T Consensus 611 L~~Lv~LL~sg------s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v-~keAA~AL~nL~~~-~ 682 (2102)
T PLN03200 611 LRTLIQLLSSS------KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAV-ATQSARALAALSRS-I 682 (2102)
T ss_pred HHHHHHHHcCC------CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHH-HHHHHHHHHHHHhC-C
Confidence 55555555431 226777777788888888877544 4556666544444 55556666655432 3
Q ss_pred CHHHH---------HHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHH
Q psy6263 588 DVLVV---------QEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAV 658 (913)
Q Consensus 588 n~~~I---------q~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~ 658 (913)
+...+ .-|..++... +.++ ...+.
T Consensus 683 ~~~q~~~~v~~GaV~pL~~LL~~~----------------------------------------------d~~v-~e~Al 715 (2102)
T PLN03200 683 KENRKVSYAAEDAIKPLIKLAKSS----------------------------------------------SIEV-AEQAV 715 (2102)
T ss_pred CHHHHHHHHHcCCHHHHHHHHhCC----------------------------------------------ChHH-HHHHH
Confidence 32222 2233333210 1233 44444
Q ss_pred HHHHHHHhhc--CcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchh
Q psy6263 659 AALGVAVVAL--GEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALN 711 (913)
Q Consensus 659 ~~Lgiali~~--ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~ 711 (913)
.+|+..+-.. -.+++.+-+...+-.+++.+++..|+.++-||.-+|-+.|..+
T Consensus 716 ~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 716 CALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred HHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence 4444433221 1122334446667788999999999999999999987777544
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=95.01 E-value=2.4 Score=57.91 Aligned_cols=277 Identities=14% Similarity=0.053 Sum_probs=165.8
Q ss_pred CccccccccccCchhhHHHHHHHHHHHHhcCCCCCc-----hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-HH-
Q psy6263 406 GGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNEC-----DPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-QE- 478 (913)
Q Consensus 406 ~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~-----d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e~- 478 (913)
.+...|-++|.+++...+--|+..+|.+..|..... -.++..|...|.+++..++.-|+-+||-+..++.+ ..
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 367777888888888888899999999977643211 13566777888888889999999999977664322 12
Q ss_pred -----HHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHh-cCC
Q psy6263 479 -----VVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITY-LGK 552 (913)
Q Consensus 479 -----v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~-~G~ 552 (913)
++..|...|.+. ..++..-|+.+|.-+..+ ++.+.+..++..+.... . ++...+.-++|-+. .+.
T Consensus 526 V~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~-~d~~~I~~Lv~LLlsdd-----~-~~~~~aL~vLgnIlsl~~ 596 (2102)
T PLN03200 526 VESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRT-ADAATISQLTALLLGDL-----P-ESKVHVLDVLGHVLSVAS 596 (2102)
T ss_pred HHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhc-cchhHHHHHHHHhcCCC-----h-hHHHHHHHHHHHHHhhcc
Confidence 233445555443 245555788888876544 45667777777654321 1 22333333454432 222
Q ss_pred c-----------ccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHH---------HHHHhhhhccCCCCCccccc
Q psy6263 553 K-----------DAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVV---------QEFLHVCSEHYTPTTSSAKE 612 (913)
Q Consensus 553 ~-----------e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~I---------q~LLh~~~~~~~~~~~~~~~ 612 (913)
+ ..++.+++.+. ++++-.+.-++++++=-+. |+...+ .-|++++...
T Consensus 597 ~~d~~~~g~~~~ggL~~Lv~LL~-sgs~~ikk~Aa~iLsnL~a--~~~d~~~avv~agaIpPLV~LLss~---------- 663 (2102)
T PLN03200 597 LEDLVREGSAANDALRTLIQLLS-SSKEETQEKAASVLADIFS--SRQDLCESLATDEIINPCIKLLTNN---------- 663 (2102)
T ss_pred hhHHHHHhhhccccHHHHHHHHc-CCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCCHHHHHHHHhcC----------
Confidence 2 23444555444 4556555555555544444 443333 3344444311
Q ss_pred ccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcc-----cccccHHHHHHHHhcc
Q psy6263 613 ETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEE-----IGSEMSTRIFGQLGRY 687 (913)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~-----ig~em~~r~~~~Ll~~ 687 (913)
+.++ ++++..+|+-..-+ +++ +...-+..-+-.|+..
T Consensus 664 ------------------------------------~~~v-~keAA~AL~nL~~~-~~~~q~~~~v~~GaV~pL~~LL~~ 705 (2102)
T PLN03200 664 ------------------------------------TEAV-ATQSARALAALSRS-IKENRKVSYAAEDAIKPLIKLAKS 705 (2102)
T ss_pred ------------------------------------ChHH-HHHHHHHHHHHHhC-CCHHHHHHHHHcCCHHHHHHHHhC
Confidence 1333 45555555544322 211 0012234445667788
Q ss_pred CChhHHhHhHHHHHHhhcCC------CchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCC
Q psy6263 688 GEPTVRRAVPLAIALCSMSN------PALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGT 742 (913)
Q Consensus 688 ~~~~vR~~a~LALgL~~as~------~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGt 742 (913)
.+..++..+..||+-+.... .+..++..|-++.+..++.+|.+|.-|+.-+.-+-
T Consensus 706 ~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 706 SSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred CChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCC
Confidence 88899999989988877432 12366888888888899999999988887666543
No 28
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.93 E-value=0.071 Score=49.52 Aligned_cols=77 Identities=26% Similarity=0.230 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhhcCcccccccHHHHHHHH---hccCChhHHhHhHHHHHHhhcCCC------chhHHHHHHhhccCcc
Q psy6263 654 SMQAVAALGVAVVALGEEIGSEMSTRIFGQL---GRYGEPTVRRAVPLAIALCSMSNP------ALNVIDVLNKYSHDLD 724 (913)
Q Consensus 654 ~~~a~~~Lgiali~~ge~ig~em~~r~~~~L---l~~~~~~vR~~a~LALgL~~as~~------~~~vid~L~~~s~D~d 724 (913)
|+.+.++|+-+-++.|+++ .+-...++..+ +.+.++.||+.+|-||.=++-... -.++++.|.|++.|+|
T Consensus 3 R~ggli~Laa~ai~l~~~~-~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDI-SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhH-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5666666776677777664 22233333333 458889999999999988873222 1489999999999999
Q ss_pred HHHHHHH
Q psy6263 725 EEVAHNA 731 (913)
Q Consensus 725 ~~Vr~~A 731 (913)
..||.+|
T Consensus 82 ~~Vr~~a 88 (97)
T PF12755_consen 82 ENVRSAA 88 (97)
T ss_pred hhHHHHH
Confidence 9999887
No 29
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.74 E-value=0.053 Score=44.34 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=38.7
Q ss_pred hhHHhHhHHHHHHhhcCCCc------hhHHHHHHhhccCccHHHHHHHHHHHHH
Q psy6263 690 PTVRRAVPLAIALCSMSNPA------LNVIDVLNKYSHDLDEEVAHNAIFSMGL 737 (913)
Q Consensus 690 ~~vR~~a~LALgL~~as~~~------~~vid~L~~~s~D~d~~Vr~~AiiALGl 737 (913)
|.||.+++.|||-+..+.+. ..++..|.++..|+++.||.+|..|||-
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 56889999999876544442 3788888888889999999999999984
No 30
>KOG0567|consensus
Probab=94.42 E-value=2.1 Score=46.50 Aligned_cols=124 Identities=13% Similarity=0.182 Sum_probs=87.2
Q ss_pred HHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHH
Q psy6263 517 ASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFL 596 (913)
Q Consensus 517 ~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LL 596 (913)
+..|-..+.+. +++ -+-|+.+ -..|=-.|.++++.++++.+... .+..|+-.++++| ..+...+|..|-
T Consensus 156 v~~lr~~lld~----t~~-l~~Ry~a-mF~LRn~g~EeaI~al~~~l~~~-SalfrhEvAfVfG----Ql~s~~ai~~L~ 224 (289)
T KOG0567|consen 156 VHELRAELLDE----TKP-LFERYRA-MFYLRNIGTEEAINALIDGLADD-SALFRHEVAFVFG----QLQSPAAIPSLI 224 (289)
T ss_pred HHHHHHHHHhc----chh-HHHHHhh-hhHhhccCcHHHHHHHHHhcccc-hHHHHHHHHHHHh----hccchhhhHHHH
Confidence 34555555552 344 6777732 34777788899999999998876 6777887776544 345566777776
Q ss_pred hhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCccccccc
Q psy6263 597 HVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEM 676 (913)
Q Consensus 597 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em 676 (913)
..+.+..+ .+-+ |+.|.-+||.. |.|.
T Consensus 225 k~L~d~~E--------------------------------------------~pMV-RhEaAeALGaI--------a~e~ 251 (289)
T KOG0567|consen 225 KVLLDETE--------------------------------------------HPMV-RHEAAEALGAI--------ADED 251 (289)
T ss_pred HHHHhhhc--------------------------------------------chHH-HHHHHHHHHhh--------cCHH
Confidence 65542211 2455 88888888843 4677
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhh
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCS 704 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~ 704 (913)
+..++...+.+-++.||-.+..|+-+.-
T Consensus 252 ~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 252 CVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988887654
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=94.39 E-value=19 Score=45.26 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=54.3
Q ss_pred cccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC----HHHHHHHHHhh
Q psy6263 412 DKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR----QEVVTLLLPVL 487 (913)
Q Consensus 412 ~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~----e~v~e~L~~~L 487 (913)
.+-+.++++.+++-|+-.+|-+.- ..-.+.+...+...+.+.++.||-.|++|+.=+|--..+ ....+.|...+
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL 188 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRV--SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELL 188 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHh
Confidence 445567789999999999887632 111233444455667788999999999999998865432 24567777777
Q ss_pred cCCCC
Q psy6263 488 TDRKS 492 (913)
Q Consensus 488 ~d~~~ 492 (913)
.|++.
T Consensus 189 ~D~dp 193 (746)
T PTZ00429 189 NDNNP 193 (746)
T ss_pred cCCCc
Confidence 66553
No 32
>KOG1078|consensus
Probab=94.23 E-value=3.1 Score=51.00 Aligned_cols=276 Identities=16% Similarity=0.161 Sum_probs=140.6
Q ss_pred ccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHH-HHH-HHHHh
Q psy6263 409 TPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQE-VVT-LLLPV 486 (913)
Q Consensus 409 ~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e~-v~e-~L~~~ 486 (913)
..++.|+.+..+.+--=|..++--...-..++..|+..-|..++.+.....|..|..-|-=+.+-.-+.- ..+ .|-+.
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~l 327 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESL 327 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhh
Confidence 3445556566666555555555444444445566788899999999999999999888877655433210 010 13334
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCccccc-chhh-HHHHHHHHHhcCCcccHHHHHH-HH
Q psy6263 487 LTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDG-HYSR-FLPLALAITYLGKKDAIDTTLA-AL 563 (913)
Q Consensus 487 L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e-~i~r-~~~lgLgLl~~G~~e~~~~ll~-~L 563 (913)
+.|+.- ..|.+|+-.. +-||+++-+++|++..... -.+.++| ++.- -+..++-..|=.+.......+. .|
T Consensus 328 Itd~Nr-----sIat~AITtL-LKTG~e~sv~rLm~qI~~f-v~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 328 ITDSNR-----SIATLAITTL-LKTGTESSVDRLMKQISSF-VSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred hccccc-----chhHHHHHHH-HHhcchhHHHHHHHHHHHH-HHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 444331 2466666654 5677888888887755431 0113331 1111 1111222222111111111111 11
Q ss_pred hcCCChhhhhHHHHHHHHHHh-ccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhh
Q psy6263 564 EVLPDPFRSMAKMMLKMCAYA-GSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKE 642 (913)
Q Consensus 564 ~~~~~pi~r~~~~~~lglAya-GTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (913)
+. +--..|-...+..+.=+ -.....+-..|.|+|. .++.
T Consensus 401 r~--eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCe-fIED------------------------------------- 440 (865)
T KOG1078|consen 401 RE--EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCE-FIED------------------------------------- 440 (865)
T ss_pred Hh--ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHH-HHHh-------------------------------------
Confidence 11 11011111111111100 0011122334444442 1100
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCC--chhHHHHHHhhc
Q psy6263 643 KKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNP--ALNVIDVLNKYS 720 (913)
Q Consensus 643 ~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~--~~~vid~L~~~s 720 (913)
-.. ..-++-.|+++=.-...-..|+-=.|.+-...+..+.+||.++.-||+=++++.+ ...|.-.|.|+.
T Consensus 441 -------ce~-~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~ 512 (865)
T KOG1078|consen 441 -------CEF-TQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCL 512 (865)
T ss_pred -------ccc-hHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHh
Confidence 000 0011222333211111111133334555555677899999999999999998775 458999999999
Q ss_pred cCccHHHHHHHHHHHHHhh
Q psy6263 721 HDLDEEVAHNAIFSMGLVG 739 (913)
Q Consensus 721 ~D~d~~Vr~~AiiALGlV~ 739 (913)
.|.|++||-.|.+++-..-
T Consensus 513 ~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 513 NDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred cCchHHHHHHHHHHHHHhh
Confidence 9999999999999988776
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=93.91 E-value=14 Score=41.84 Aligned_cols=279 Identities=17% Similarity=0.095 Sum_probs=140.7
Q ss_pred hhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCC--HHHHHHHHHHHHHHhccCCC
Q psy6263 399 IYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDS--ITLRIGAVLGLGLAYAGTKR 476 (913)
Q Consensus 399 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~--~~v~~gA~LGLGlay~Gs~~ 476 (913)
...|+.++++..+.+-+...... ..+.+.+|.++.... +.+.++..+...+.... .....-+...||.+|...++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPET--VELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34566777777666655432222 245666676665433 33567777766665432 22334566777888887766
Q ss_pred H-HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhc--CCc
Q psy6263 477 Q-EVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYL--GKK 553 (913)
Q Consensus 477 e-~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~--G~~ 553 (913)
- .+.+.+...+..+... ..+-..++.++.-.++.+-...++..+........ . .....+-..+|.+++ |+-
T Consensus 123 ~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFA----EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL-R-VEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHHHHHHHHHHHcCCcch----HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc-h-HHHHHHHHHHHHHHHhCCCH
Confidence 4 4445454444321111 13455667777777766555555555544221100 0 001112234555544 444
Q ss_pred ccHHHHHHHHhcC-CChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCC
Q psy6263 554 DAIDTTLAALEVL-PDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTEST 632 (913)
Q Consensus 554 e~~~~ll~~L~~~-~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (913)
+.+...++.+... ++. ....+.+|-.|...|+.....+++.-+.+..
T Consensus 197 ~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----------------------------- 244 (389)
T PRK11788 197 DAARALLKKALAADPQC---VRASILLGDLALAQGDYAAAIEALERVEEQD----------------------------- 244 (389)
T ss_pred HHHHHHHHHHHhHCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------------------------
Confidence 5565555554432 221 1234667888899998755444444332110
Q ss_pred chhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCC-chh
Q psy6263 633 PAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNP-ALN 711 (913)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~-~~~ 711 (913)
++. ...+...++-++...|+ .+.+.+.+..+.+. +|..... +.+|-++...+ ...
T Consensus 245 -----------------p~~-~~~~~~~l~~~~~~~g~---~~~A~~~l~~~~~~-~p~~~~~--~~la~~~~~~g~~~~ 300 (389)
T PRK11788 245 -----------------PEY-LSEVLPKLMECYQALGD---EAEGLEFLRRALEE-YPGADLL--LALAQLLEEQEGPEA 300 (389)
T ss_pred -----------------hhh-HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh-CCCchHH--HHHHHHHHHhCCHHH
Confidence 010 11233456666777664 45667777776654 2333222 44444443332 235
Q ss_pred HHHHHHhhc-cCccHHHHHHHHHHHHHhhCCCC
Q psy6263 712 VIDVLNKYS-HDLDEEVAHNAIFSMGLVGAGTN 743 (913)
Q Consensus 712 vid~L~~~s-~D~d~~Vr~~AiiALGlV~aGtn 743 (913)
++..+.+.. .+++.. .....++..+..++.+
T Consensus 301 A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 301 AQALLREQLRRHPSLR-GFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCc
Confidence 666665543 345443 3445556555555444
No 34
>KOG2171|consensus
Probab=93.91 E-value=4.5 Score=51.61 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHhhcC-cccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc------hhHHHHHHhhccCccHH
Q psy6263 654 SMQAVAALGVAVVALG-EEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA------LNVIDVLNKYSHDLDEE 726 (913)
Q Consensus 654 ~~~a~~~Lgiali~~g-e~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~------~~vid~L~~~s~D~d~~ 726 (913)
.+.|.-+|-.+-+..| +.+- -+....+..++++.++.-|.++-+||+-+.-|.++ .+|++....+..|+.+.
T Consensus 326 ~~~A~~~lDrlA~~L~g~~v~-p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphpr 404 (1075)
T KOG2171|consen 326 YRAAEQALDRLALHLGGKQVL-PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPR 404 (1075)
T ss_pred HHHHHHHHHHHHhcCChhheh-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 3334444444444433 3221 13455566678899999999999999999877654 27777778888999999
Q ss_pred HHHHHHHHHHHhhC
Q psy6263 727 VAHNAIFSMGLVGA 740 (913)
Q Consensus 727 Vr~~AiiALGlV~a 740 (913)
||++|+.|+|-+..
T Consensus 405 Vr~AA~naigQ~st 418 (1075)
T KOG2171|consen 405 VRYAALNAIGQMST 418 (1075)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999998874
No 35
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.89 E-value=1.2 Score=52.59 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHhhcCCC-HHHHHHHHHHHHHHh-ccCCCHHHHHHHHHhhcC------CCCcHHHHH
Q psy6263 427 LLALGIVNCGVRNECDPALALLSDYVLNDS-ITLRIGAVLGLGLAY-AGTKRQEVVTLLLPVLTD------RKSTPEVVA 498 (913)
Q Consensus 427 llaLGLi~aG~~~e~d~~l~lL~~~L~~~~-~~v~~gA~LGLGlay-~Gs~~e~v~e~L~~~L~d------~~~~~ev~~ 498 (913)
.=|+|+.|.-.+.|. -++--|.+++..+. -.-+++..+++-.+. .=..|.+....+.|.|.+ +.+.+|+++
T Consensus 208 YHalGlLyq~kr~dk-ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar 286 (898)
T COG5240 208 YHALGLLYQSKRTDK-MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAAR 286 (898)
T ss_pred HHHHHHHHHHhcccH-HHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHH
Confidence 346788886555542 22223444544333 223333333332211 123455677777777753 236677554
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHH-HHHHhcCCcc---cHHHHHHHHhcCCCh-hhhh
Q psy6263 499 FAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLA-LAITYLGKKD---AIDTTLAALEVLPDP-FRSM 573 (913)
Q Consensus 499 ~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lg-LgLl~~G~~e---~~~~ll~~L~~~~~p-i~r~ 573 (913)
+.-++..=++|+...+.+-.-|+.+.. ++....||.|+- |.-+.+.+++ .|..-++.|..+.+. |.-|
T Consensus 287 -~v~~~~~~nv~~~~~~~~vs~L~~fL~------s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~Isty 359 (898)
T COG5240 287 -AVCALSEENVGSQFVDQTVSSLRTFLK------STRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTY 359 (898)
T ss_pred -HHHHHHHhccCHHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHH
Confidence 333445557787654443333444433 122678898885 3444444443 455666666655443 4445
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHhhhhccCC
Q psy6263 574 AKMMLKMCAYAGSGDVLVVQEFLHVCSEHYT 604 (913)
Q Consensus 574 ~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~ 604 (913)
+.+ ....||+.+.|.+|......-.+
T Consensus 360 AIT-----tLLKTGt~e~idrLv~~I~sfvh 385 (898)
T COG5240 360 AIT-----TLLKTGTEETIDRLVNLIPSFVH 385 (898)
T ss_pred HHH-----HHHHcCchhhHHHHHHHHHHHHH
Confidence 433 34899999999998877764443
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.87 E-value=3.8 Score=48.77 Aligned_cols=92 Identities=25% Similarity=0.302 Sum_probs=62.5
Q ss_pred cccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC--HH-HHHHHHHhhc
Q psy6263 412 DKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR--QE-VVTLLLPVLT 488 (913)
Q Consensus 412 ~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~--e~-v~e~L~~~L~ 488 (913)
.+-|.++++++++-|+-.++-+.. ..-.+++...+...+.++++.+|-.|++++.-+|-...+ ++ +.+.|...+.
T Consensus 85 ~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~ 162 (526)
T PF01602_consen 85 QKDLNSPNPYIRGLALRTLSNIRT--PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLS 162 (526)
T ss_dssp HHHHCSSSHHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTT
T ss_pred HHhhcCCCHHHHHHHHhhhhhhcc--cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhcc
Confidence 344667889999999999998752 111234455566667789999999999999998865443 23 5677777776
Q ss_pred CCCCcHHHHHHHHHHHHHH
Q psy6263 489 DRKSTPEVVAFAAVAASLI 507 (913)
Q Consensus 489 d~~~~~ev~~~A~laLGLi 507 (913)
|.+ ..|..+|..++.-+
T Consensus 163 d~~--~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 163 DKD--PSVVSAALSLLSEI 179 (526)
T ss_dssp HSS--HHHHHHHHHHHHHH
T ss_pred CCc--chhHHHHHHHHHHH
Confidence 554 34555665565554
No 37
>KOG0166|consensus
Probab=93.77 E-value=5 Score=47.73 Aligned_cols=240 Identities=17% Similarity=0.175 Sum_probs=151.2
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHHhccCCCH-------HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCC-----
Q psy6263 447 LLSDYVL-NDSITLRIGAVLGLGLAYAGTKRQ-------EVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGY----- 513 (913)
Q Consensus 447 lL~~~L~-~~~~~v~~gA~LGLGlay~Gs~~e-------~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n----- 513 (913)
.|-..+. +.++.++.-|+-+|--+..||... .+.-.+...+.+++ .+++.=|.+|||=| +|-+.
T Consensus 113 ~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~--~~v~eQavWALgNI-agds~~~Rd~ 189 (514)
T KOG0166|consen 113 RLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPS--ADVREQAVWALGNI-AGDSPDCRDY 189 (514)
T ss_pred HHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCc--HHHHHHHHHHHhcc-ccCChHHHHH
Confidence 3455554 455788999988888888887653 23344555555433 34666789999975 55441
Q ss_pred ---HHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCc-----ccHHHHHHHH---hcCCChhhhhHHHHHHHHH
Q psy6263 514 ---HEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKK-----DAIDTTLAAL---EVLPDPFRSMAKMMLKMCA 582 (913)
Q Consensus 514 ---~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~-----e~~~~ll~~L---~~~~~pi~r~~~~~~lglA 582 (913)
.-+++.++..+... ..- .+.|-+.-.|.-++-|+. +.+..++..| ..+.|+.+.-=+ .-+++
T Consensus 190 vl~~g~l~pLl~~l~~~----~~~-~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da--~WAls 262 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKS----DKL-SMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDA--CWALS 262 (514)
T ss_pred HHhhcchHHHHHHhccc----cch-HHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHH--HHHHH
Confidence 12334455554431 112 578888889999998985 4555555444 456677655433 34678
Q ss_pred HhccCCHHHHHHHHhhhh--------ccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhh
Q psy6263 583 YAGSGDVLVVQEFLHVCS--------EHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSS 654 (913)
Q Consensus 583 yaGTGn~~~Iq~LLh~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~ 654 (913)
|.--|.++.||.++..-+ .+. +..+ .
T Consensus 263 yLsdg~ne~iq~vi~~gvv~~LV~lL~~~---------------------------------------------~~~v-~ 296 (514)
T KOG0166|consen 263 YLTDGSNEKIQMVIDAGVVPRLVDLLGHS---------------------------------------------SPKV-V 296 (514)
T ss_pred HHhcCChHHHHHHHHccchHHHHHHHcCC---------------------------------------------Cccc-c
Confidence 888888888877654221 111 0111 1
Q ss_pred HHHHHHHHHHHhhcCcccccc-----cHHHHHHHHhc-cCChhHHhHhHHHHHHhhcCCCc-------hhHHHHHHhhcc
Q psy6263 655 MQAVAALGVAVVALGEEIGSE-----MSTRIFGQLGR-YGEPTVRRAVPLAIALCSMSNPA-------LNVIDVLNKYSH 721 (913)
Q Consensus 655 ~~a~~~Lgiali~~ge~ig~e-----m~~r~~~~Ll~-~~~~~vR~~a~LALgL~~as~~~-------~~vid~L~~~s~ 721 (913)
.++.-.+.-|..|.+.-.+ -++..|..|+. ....+||.-||..|.=+.|||+. .+++..|-+..+
T Consensus 297 --~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~ 374 (514)
T KOG0166|consen 297 --TPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ 374 (514)
T ss_pred --cHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh
Confidence 1222222224444332111 13555666766 77788999999999999999973 377778888888
Q ss_pred CccHHHHHHHHHHHHHhhCCCCh
Q psy6263 722 DLDEEVAHNAIFSMGLVGAGTNN 744 (913)
Q Consensus 722 D~d~~Vr~~AiiALGlV~aGtnn 744 (913)
..+-..|.-|..|++=..+|.+.
T Consensus 375 ~~ef~~rKEAawaIsN~ts~g~~ 397 (514)
T KOG0166|consen 375 TAEFDIRKEAAWAISNLTSSGTP 397 (514)
T ss_pred ccchHHHHHHHHHHHhhcccCCH
Confidence 88888999999999988877653
No 38
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.17 E-value=29 Score=43.12 Aligned_cols=184 Identities=15% Similarity=0.081 Sum_probs=92.3
Q ss_pred hhhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH
Q psy6263 398 LIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ 477 (913)
Q Consensus 398 lI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e 477 (913)
....|+.++++..+.+.+...... ..+...+|.++.... +.+.++..+...+....... .+...++.++.-.++-
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPDS--ALALLLLADAYAVMK-NYAKAITSLKRALELKPDNT--EAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCH
Confidence 445677777777666654322111 234555666654322 33567777776665432222 2334445555555553
Q ss_pred -HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccH
Q psy6263 478 -EVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAI 556 (913)
Q Consensus 478 -~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~ 556 (913)
+..+.+........... ..-..+|.++...++.+-....+..+....+ . . .....++..+...|+.+.+
T Consensus 686 ~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~-~-~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 686 ESAKKIAKSLQKQHPKAA----LGFELEGDLYLRQKDYPAAIQAYRKALKRAP----S-S-QNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHHHHHHHHhhCcCCh----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC----C-c-hHHHHHHHHHHHCCCHHHH
Confidence 33333333322111111 2334567777777776665555555554211 1 1 2223344455556666666
Q ss_pred HHHHHHHhc-CCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhh
Q psy6263 557 DTTLAALEV-LPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVC 599 (913)
Q Consensus 557 ~~ll~~L~~-~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~ 599 (913)
...++.... .++. ......+|..|...|+.......+.-+
T Consensus 756 ~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 756 VKTLEAWLKTHPND---AVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHhCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 666655443 2222 233456778888889875444444444
No 39
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=90.93 E-value=10 Score=42.70 Aligned_cols=247 Identities=18% Similarity=0.166 Sum_probs=148.3
Q ss_pred HHhh-cCCCHHHHHHHHHHHHHHhccCCCH-------HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCC--H----
Q psy6263 449 SDYV-LNDSITLRIGAVLGLGLAYAGTKRQ-------EVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGY--H---- 514 (913)
Q Consensus 449 ~~~L-~~~~~~v~~gA~LGLGlay~Gs~~e-------~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n--~---- 514 (913)
-+++ +......++-|+-+|--+..||.++ .+.-++.+.|.++.. +|.--|.+|||-| +|-.. .
T Consensus 120 vefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~--~V~eQavWALGNi-AGDS~~~RD~vL 196 (526)
T COG5064 120 VEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED--DVREQAVWALGNI-AGDSEGCRDYVL 196 (526)
T ss_pred HHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH--HHHHHHHHHhccc-cCCchhHHHHHH
Confidence 3344 3455678888888998888888875 456777888776442 3444688888865 33210 0
Q ss_pred --HHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcc--------cHHHHHHHHhcCCChhhhhHHHHHHHHHHh
Q psy6263 515 --EVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKD--------AIDTTLAALEVLPDPFRSMAKMMLKMCAYA 584 (913)
Q Consensus 515 --~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e--------~~~~ll~~L~~~~~pi~r~~~~~~lglAya 584 (913)
-+.+.+|..+.+. ..|=++.|-+.-.|.=++-|+.- ++-.++..|.-..||-.-.-++| +++|.
T Consensus 197 ~~galeplL~ll~ss----~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~W--AiSYl 270 (526)
T COG5064 197 QCGALEPLLGLLLSS----AIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACW--AISYL 270 (526)
T ss_pred hcCchHHHHHHHHhc----cchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHH--HHHHh
Confidence 1345566665542 11225677777777777777742 44455666666667755555555 46899
Q ss_pred ccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHH
Q psy6263 585 GSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVA 664 (913)
Q Consensus 585 GTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgia 664 (913)
.-|.+++|+..|..-...-- .+ .++ .++. ..+.++.-.+.
T Consensus 271 sDg~~E~i~avld~g~~~RL--------------vE--lLs-----------------------~~sa-~iqtPalR~vG 310 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRL--------------VE--LLS-----------------------HESA-KIQTPALRSVG 310 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHH--------------HH--Hhc-----------------------Cccc-cccCHHHHhhc
Confidence 99999999887653211000 00 000 0000 11112222222
Q ss_pred HhhcCcccccc----c-HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccCccHHHHHHHH
Q psy6263 665 VVALGEEIGSE----M-STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHDLDEEVAHNAI 732 (913)
Q Consensus 665 li~~ge~ig~e----m-~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D~d~~Vr~~Ai 732 (913)
-|-+|.+.-.+ | ++..|..|+......||.-+|-.+.=+-|||-. .+++-.|-++....+-..+.-|.
T Consensus 311 NIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEAC 390 (526)
T COG5064 311 NIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEAC 390 (526)
T ss_pred CeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 23333332111 1 456677777777779999999999999999853 25555666666667777788888
Q ss_pred HHHHHhhCCCCh
Q psy6263 733 FSMGLVGAGTNN 744 (913)
Q Consensus 733 iALGlV~aGtnn 744 (913)
-|..=.+.|.+|
T Consensus 391 WAisNatsgg~~ 402 (526)
T COG5064 391 WAISNATSGGLN 402 (526)
T ss_pred HHHHhhhccccC
Confidence 888888877766
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=90.47 E-value=50 Score=41.79 Aligned_cols=84 Identities=14% Similarity=0.016 Sum_probs=44.6
Q ss_pred hhhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccC-CC
Q psy6263 398 LIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGT-KR 476 (913)
Q Consensus 398 lI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs-~~ 476 (913)
++..|+.++++..+.+.+....+... .+.+|.++.... +.+.++..+...+.........-. .+|.++.-. ..
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~---~~~la~~l~~~g-~~~~Al~~l~~al~~~P~~~~~~~--~la~~l~~~~~~ 166 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN---LLALAYVYKRAG-RHWDELRAMTQALPRAPQTQQYPT--EYVQALRNNRLS 166 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHCCCh
Confidence 34577888888888888764333333 555666655332 235677777777653322222222 233333322 33
Q ss_pred HHHHHHHHHhh
Q psy6263 477 QEVVTLLLPVL 487 (913)
Q Consensus 477 e~v~e~L~~~L 487 (913)
+++++.+....
T Consensus 167 e~Al~~l~~~~ 177 (765)
T PRK10049 167 APALGAIDDAN 177 (765)
T ss_pred HHHHHHHHhCC
Confidence 44566555444
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=90.12 E-value=37 Score=41.18 Aligned_cols=207 Identities=13% Similarity=0.037 Sum_probs=102.9
Q ss_pred HHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccH
Q psy6263 478 EVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAI 556 (913)
Q Consensus 478 ~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~ 556 (913)
+..+.+...+. ++. .. .+-..+|.++...++.+.....++.+.+..+ + ...-...+|..+...|+.+++
T Consensus 322 ~A~~~~~~Al~ldP~-~~----~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P---~--~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 322 KAKEHAIKATELDHN-NP----QALGLLGLINTIHSEYIVGSLLFKQANLLSP---I--SADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred HHHHHHHHHHhcCCC-CH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C--CHHHHHHHHHHHHHCCCHHHH
Confidence 45555555554 333 22 2344667777777776666666666655321 1 122234557777778887777
Q ss_pred HHHHHHHhcC-CChhhhhHHHHHHHHHHhccCCH-HHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCch
Q psy6263 557 DTTLAALEVL-PDPFRSMAKMMLKMCAYAGSGDV-LVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPA 634 (913)
Q Consensus 557 ~~ll~~L~~~-~~pi~r~~~~~~lglAyaGTGn~-~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (913)
...++..... +++. .. .+..+.++.-.|+. ++++.+........
T Consensus 392 i~~~~~Al~l~P~~~-~~--~~~~~~~~~~~g~~eeA~~~~~~~l~~~~------------------------------- 437 (553)
T PRK12370 392 LQTINECLKLDPTRA-AA--GITKLWITYYHTGIDDAIRLGDELRSQHL------------------------------- 437 (553)
T ss_pred HHHHHHHHhcCCCCh-hh--HHHHHHHHHhccCHHHHHHHHHHHHHhcc-------------------------------
Confidence 6666665543 3321 11 12223333445664 45554444332110
Q ss_pred hhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhc--CCCchhH
Q psy6263 635 AAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSM--SNPALNV 712 (913)
Q Consensus 635 ~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~a--s~~~~~v 712 (913)
++ ...+...+|.++...|+ .+.|...+..+...... ...+...++-.++ +......
T Consensus 438 ---------------p~--~~~~~~~la~~l~~~G~---~~eA~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~a~~~ 495 (553)
T PRK12370 438 ---------------QD--NPILLSMQVMFLSLKGK---HELARKLTKEISTQEIT--GLIAVNLLYAEYCQNSERALPT 495 (553)
T ss_pred ---------------cc--CHHHHHHHHHHHHhCCC---HHHHHHHHHHhhhccch--hHHHHHHHHHHHhccHHHHHHH
Confidence 00 11234557777777775 45677777776554322 2222233333333 3333454
Q ss_pred HHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q psy6263 713 IDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLA 755 (913)
Q Consensus 713 id~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~ 755 (913)
++.|.+-.+......+. +.++.+.-++++-+.+++++.
T Consensus 496 l~~ll~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~ 533 (553)
T PRK12370 496 IREFLESEQRIDNNPGL-----LPLVLVAHGEAIAEKMWNKFK 533 (553)
T ss_pred HHHHHHHhhHhhcCchH-----HHHHHHHHhhhHHHHHHHHhh
Confidence 55555533322211121 555666667777777776654
No 42
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=89.83 E-value=61 Score=40.25 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhcc-CccHHHHHHHHHHH
Q psy6263 657 AVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSH-DLDEEVAHNAIFSM 735 (913)
Q Consensus 657 a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~-D~d~~Vr~~AiiAL 735 (913)
+...+|.++...|+ .+.+...+.++++....+......++......++ ..+++.+.+... +++.. .+...+
T Consensus 772 ~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~A~~~~~~~~~~~~~~~---~~~~~~ 843 (899)
T TIGR02917 772 LRTALAELYLAQKD---YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD--PRALEYAEKALKLAPNIP---AILDTL 843 (899)
T ss_pred HHHHHHHHHHHCcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc--HHHHHHHHHHHhhCCCCc---HHHHHH
Confidence 34567777777775 4568888888887655444333333333333444 567777777542 33332 123345
Q ss_pred HHhhCCCChh-HHHHHHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q psy6263 736 GLVGAGTNNA-RLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGK 779 (913)
Q Consensus 736 GlV~aGtnn~-ri~~~Lr~L~~~~~~d~~~~f~~~iAqGLl~~Gk 779 (913)
|.+....++. +-...+++..+....|+.. ...+|+.+...|.
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~l~~~~~~~g~ 886 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPEAAAI--RYHLALALLATGR 886 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHH--HHHHHHHHHHcCC
Confidence 5555555542 3344555544332234433 4445666666654
No 43
>KOG0915|consensus
Probab=89.35 E-value=5.3 Score=52.31 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=52.2
Q ss_pred cccccccCchhhH-HHHHHHHHHHH-hcCCCCCc----hhHHHHHHHhhcCCCHHHHHHHHHHHHHHh-ccCCC--HHHH
Q psy6263 410 PIDKYLYTSEDYI-KAGALLALGIV-NCGVRNEC----DPALALLSDYVLNDSITLRIGAVLGLGLAY-AGTKR--QEVV 480 (913)
Q Consensus 410 ~l~~yL~s~~~~~-k~GAllaLGLi-~aG~~~e~----d~~l~lL~~~L~~~~~~v~~gA~LGLGlay-~Gs~~--e~v~ 480 (913)
.|+..+++++++. ++|.+-=|.++ |+|+..+. .++..-....|.++++.+|=-|.=|||++| .|-.. ++..
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV 901 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLV 901 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHH
Confidence 3444555555554 45555555555 67877663 345555566677888999999999999998 23222 4777
Q ss_pred HHHHHhhcC
Q psy6263 481 TLLLPVLTD 489 (913)
Q Consensus 481 e~L~~~L~d 489 (913)
+.|...+..
T Consensus 902 ~sL~~tl~~ 910 (1702)
T KOG0915|consen 902 DSLVNTLTG 910 (1702)
T ss_pred HHHHHHHhc
Confidence 778877753
No 44
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=88.49 E-value=49 Score=37.41 Aligned_cols=250 Identities=14% Similarity=0.115 Sum_probs=130.3
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy6263 441 CDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASA 519 (913)
Q Consensus 441 ~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~ 519 (913)
.+.++..+...+....... .+...+|.+|...++- +..+.+...+..+.........+...||.+|...++.+.+..
T Consensus 51 ~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETV--ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred hHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3568888888776533332 3456677777766663 455555555443322222223466788999999888777777
Q ss_pred HHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcC-CChhhh--hHHHHHHHHHHhccCCHHHHHHHH
Q psy6263 520 ILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVL-PDPFRS--MAKMMLKMCAYAGSGDVLVVQEFL 596 (913)
Q Consensus 520 lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~-~~pi~r--~~~~~~lglAyaGTGn~~~Iq~LL 596 (913)
.+..+.+... . ...-...++..+...|+-+++...++.+... +++... ......+|..|...|+.....+.+
T Consensus 129 ~~~~~l~~~~----~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 129 LFLQLVDEGD----F-AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHcCCc----c-hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7766654211 1 1222223344444456656666666665543 222111 112345777888899875444444
Q ss_pred hhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCccccccc
Q psy6263 597 HVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEM 676 (913)
Q Consensus 597 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em 676 (913)
.-+.+.. ++ ...+...+|.++...|+ .+.
T Consensus 204 ~~al~~~----------------------------------------------p~--~~~~~~~la~~~~~~g~---~~~ 232 (389)
T PRK11788 204 KKALAAD----------------------------------------------PQ--CVRASILLGDLALAQGD---YAA 232 (389)
T ss_pred HHHHhHC----------------------------------------------cC--CHHHHHHHHHHHHHCCC---HHH
Confidence 3332111 01 11234567888888775 466
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCC-chhHHHHHHhhc-cCccHHHHHHHHHHHHHhhCCCChh-HHHHHHHH
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNP-ALNVIDVLNKYS-HDLDEEVAHNAIFSMGLVGAGTNNA-RLATMLRQ 753 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~-~~~vid~L~~~s-~D~d~~Vr~~AiiALGlV~aGtnn~-ri~~~Lr~ 753 (913)
|.+.+....+.. |.....+-..++-++...+ ...++..+.+.. .+++..+. ..+|.+....++. +...++++
T Consensus 233 A~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~----~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 233 AIEALERVEEQD-PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL----LALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHHHHHHHC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH----HHHHHHHHHhCCHHHHHHHHHH
Confidence 788888887653 3222222233444443322 335666666643 24444322 3444444444432 33344443
No 45
>PTZ00429 beta-adaptin; Provisional
Probab=87.56 E-value=91 Score=39.47 Aligned_cols=182 Identities=12% Similarity=0.094 Sum_probs=85.1
Q ss_pred cccccccCchhhHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC---HHHHHHH
Q psy6263 410 PIDKYLYTSEDYIKAGALLALGIVNCGVRNEC---DPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR---QEVVTLL 483 (913)
Q Consensus 410 ~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~---d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~---e~v~e~L 483 (913)
.|.+.|..+++.+.+.|+.+|=-+.....+.. -+.+..|...+.+-+++.++-.+=.| ..|.=..+ .++++.+
T Consensus 183 ~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL-~~y~P~~~~e~~~il~~l 261 (746)
T PTZ00429 183 DLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELL-AAQRPSDKESAETLLTRV 261 (746)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHH-HhcCCCCcHHHHHHHHHH
Confidence 34445556788899999988877653111100 11222333334456677776444443 22321222 2566777
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----HcCCcCcccccchhhHHHH-HHHHHhcCCcccHHH
Q psy6263 484 LPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTL----IELPVSELQDGHYSRFLPL-ALAITYLGKKDAIDT 558 (913)
Q Consensus 484 ~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l----~~~~~~~~~~e~i~r~~~l-gLgLl~~G~~e~~~~ 558 (913)
.+.+...+.. |. .++.-+=+-+.-..+.+..+.++..+ ..-. .++ +-.+++++ -+-++....++....
T Consensus 262 ~~~Lq~~N~A--VV-l~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~---ss~-~eiqyvaLr~I~~i~~~~P~lf~~ 334 (746)
T PTZ00429 262 LPRMSHQNPA--VV-MGAIKVVANLASRCSQELIERCTVRVNTALLTLS---RRD-AETQYIVCKNIHALLVIFPNLLRT 334 (746)
T ss_pred HHHhcCCCHH--HH-HHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh---CCC-ccHHHHHHHHHHHHHHHCHHHHHH
Confidence 7777654322 21 22222222222222344444432211 1100 012 55777777 455555555655444
Q ss_pred HHHHH-hcCCChh-hhhHHHHHHHHHHhccCCH-HHHHHHHhhhh
Q psy6263 559 TLAAL-EVLPDPF-RSMAKMMLKMCAYAGSGDV-LVVQEFLHVCS 600 (913)
Q Consensus 559 ll~~L-~~~~~pi-~r~~~~~~lglAyaGTGn~-~~Iq~LLh~~~ 600 (913)
-++.. ....||. .|.- .+-+-+..+...|+ .++++|.+++.
T Consensus 335 ~~~~Ff~~~~Dp~yIK~~-KLeIL~~Lane~Nv~~IL~EL~eYa~ 378 (746)
T PTZ00429 335 NLDSFYVRYSDPPFVKLE-KLRLLLKLVTPSVAPEILKELAEYAS 378 (746)
T ss_pred HHHhhhcccCCcHHHHHH-HHHHHHHHcCcccHHHHHHHHHHHhh
Confidence 44443 2334554 2222 22222333544555 66788888775
No 46
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=86.77 E-value=3.6 Score=37.88 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=53.4
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCC
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTN 743 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtn 743 (913)
...+-.++++.++.+|..+..+|+-++.++|. ..+++.|.++..|.+..|+..|+.+|+-+..+.+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 34455566778899999999999999877432 2778888888888999999999999999987654
No 47
>KOG1824|consensus
Probab=86.50 E-value=1.1e+02 Score=39.23 Aligned_cols=285 Identities=18% Similarity=0.190 Sum_probs=146.1
Q ss_pred chhhHHHHHHHHHHHHhcCCCC----CchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH-------HHHHHHHHh
Q psy6263 418 SEDYIKAGALLALGIVNCGVRN----ECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ-------EVVTLLLPV 486 (913)
Q Consensus 418 ~~~~~k~GAllaLGLi~aG~~~----e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e-------~v~e~L~~~ 486 (913)
.+..+|--|+-.+|.+-+.-++ |-...+..|.+-+ .++.+|..|.=++-++++..-+= ++++.|...
T Consensus 582 ~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~f 659 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASF 659 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHH
Confidence 3567777888888876553321 2122333333333 45788999999999887765542 233333333
Q ss_pred hcCCCCcHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHH---HHHHhcCCcc--------
Q psy6263 487 LTDRKSTPEV-VAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLA---LAITYLGKKD-------- 554 (913)
Q Consensus 487 L~d~~~~~ev-~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lg---LgLl~~G~~e-------- 554 (913)
+....-.... ...|...|--.|.++...+.++.++..+-.- . .|.-.+...++ +..++.+...
T Consensus 660 lrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~L----i-sesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~ 734 (1233)
T KOG1824|consen 660 LRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPL----I-SESDLHVTQLAVAFLTTLAIIQPSSLLKISNP 734 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhh----h-hHHHHHHHHHHHHHHHHHHhcccHHHHHHhhh
Confidence 3211101111 1245556666777777777777766655431 1 11222333333 3444444432
Q ss_pred cHHHHHHHHhcCCChhhhhHH---HHHHHHHHhccCCHHH-HHHHHhhhhccCCCCCcccccccccccccccccCCCCCC
Q psy6263 555 AIDTTLAALEVLPDPFRSMAK---MMLKMCAYAGSGDVLV-VQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTE 630 (913)
Q Consensus 555 ~~~~ll~~L~~~~~pi~r~~~---~~~lglAyaGTGn~~~-Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (913)
..+.+|..+. .|...-++ ++-.=-|..+|++... +-.++..+...+.+ ..+
T Consensus 735 iL~~ii~ll~---Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~----------------------~~~ 789 (1233)
T KOG1824|consen 735 ILDEIIRLLR---SPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYE----------------------QVT 789 (1233)
T ss_pred hHHHHHHHhh---CccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCccc----------------------ccc
Confidence 1222222221 22211111 1111123345554322 55555544332210 000
Q ss_pred CCchhhhchhhhhhhhhhhhh--hhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhc-cCChhHHhHhHHHHHHhhcC-
Q psy6263 631 STPAAAANDKKEKKDKEKEKD--LSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGR-YGEPTVRRAVPLAIALCSMS- 706 (913)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~d--v~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~-~~~~~vR~~a~LALgL~~as- 706 (913)
+.. ... .+.-.++++|-.++ + +-+...+.+++..+.. ..+..||-.+-|.+|=+.-+
T Consensus 790 ~~l---------------~kqa~~siA~cvA~Lt~~~---~-~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~ 850 (1233)
T KOG1824|consen 790 DGL---------------HKQAYYSIAKCVAALTCAC---P-QKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRK 850 (1233)
T ss_pred cch---------------hHHHHHHHHHHHHHHHHhc---c-ccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCC
Confidence 000 000 01222344443332 2 2234456666666653 34456888898999988754
Q ss_pred --CCchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q psy6263 707 --NPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQ 753 (913)
Q Consensus 707 --~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~ 753 (913)
+|.....+++..-...+..+|+-+|..|||-+..|.-+.=+.-+|.|
T Consensus 851 ~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~q 899 (1233)
T KOG1824|consen 851 DLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQ 899 (1233)
T ss_pred CCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHH
Confidence 46777778877777778999999999999999999776444444444
No 48
>KOG0166|consensus
Probab=86.02 E-value=7.2 Score=46.49 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=89.8
Q ss_pred cHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCH-------HHHHHHHhhhhccCCCCCcccccccccccccccccCCC
Q psy6263 555 AIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDV-------LVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGG 627 (913)
Q Consensus 555 ~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~-------~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (913)
.++.+++.|....+|..++-+++++.=.-.||... .++-.+.++..+.
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~------------------------- 164 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP------------------------- 164 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC-------------------------
Confidence 45667777877788888888888655333444322 2333344444321
Q ss_pred CCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHH--HHHHHhc---cCCh-hHHhHhHHHHH
Q psy6263 628 STESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTR--IFGQLGR---YGEP-TVRRAVPLAIA 701 (913)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r--~~~~Ll~---~~~~-~vR~~a~LALg 701 (913)
+.++ +.||+.+||-..- .|... .+.+++ .+..|++ ..++ ...|.+.-+|.
T Consensus 165 ---------------------~~~v-~eQavWALgNIag-ds~~~-Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~Ls 220 (514)
T KOG0166|consen 165 ---------------------SADV-REQAVWALGNIAG-DSPDC-RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLS 220 (514)
T ss_pred ---------------------cHHH-HHHHHHHHhcccc-CChHH-HHHHHhhcchHHHHHHhccccchHHHHHHHHHHH
Confidence 3566 7788888775431 11100 111111 1233332 2222 46778889999
Q ss_pred HhhcCC-Cch------hHHHHHHhhccCccHHHHHHHHHHHHHhhCCCCh
Q psy6263 702 LCSMSN-PAL------NVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNN 744 (913)
Q Consensus 702 L~~as~-~~~------~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn 744 (913)
-+|.|. |.+ .++..|.++.|..|.+|...|.-|+.-+..|+|.
T Consensus 221 Nlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne 270 (514)
T KOG0166|consen 221 NLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE 270 (514)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 999875 543 7888999999999999999999999999999985
No 49
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=84.84 E-value=3.9 Score=38.01 Aligned_cols=79 Identities=10% Similarity=0.066 Sum_probs=55.8
Q ss_pred HHhHhHHHHHHhhcCCCc------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHHh-cCC
Q psy6263 692 VRRAVPLAIALCSMSNPA------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNN---ARLATMLRQLAQYH-VKN 761 (913)
Q Consensus 692 vR~~a~LALgL~~as~~~------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn---~ri~~~Lr~L~~~~-~~d 761 (913)
-|+|+-+||+-++.+-+. ..++..+.+...|.|.-||+.|.-||.-+.--..+ +...+++..|.+.. .-|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 588888888888766553 37777778888999999999999999988755443 22344454455433 456
Q ss_pred hhHHHHHHH
Q psy6263 762 TGHLFMVRI 770 (913)
Q Consensus 762 ~~~~f~~~i 770 (913)
++++.++.+
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 677777654
No 50
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=84.47 E-value=14 Score=41.52 Aligned_cols=28 Identities=29% Similarity=0.166 Sum_probs=24.4
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhh
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCS 704 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~ 704 (913)
+...|..|++..+..||.+|.-+|||+|
T Consensus 229 ~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 229 ALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5556777888999999999999999997
No 51
>KOG2259|consensus
Probab=81.83 E-value=25 Score=42.88 Aligned_cols=116 Identities=17% Similarity=0.117 Sum_probs=78.8
Q ss_pred hhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCC---hhHHhHhHHHHHHhhc-CCCchhHHHHHHhhccCccHH
Q psy6263 651 DLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGE---PTVRRAVPLAIALCSM-SNPALNVIDVLNKYSHDLDEE 726 (913)
Q Consensus 651 dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~---~~vR~~a~LALgL~~a-s~~~~~vid~L~~~s~D~d~~ 726 (913)
+| |++||.+++-.-.+. |..+.+.++-|....| ..||--+..+|--++. ..=+...+++...-..|...+
T Consensus 388 EV-R~AAV~Sl~~La~ss-----P~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~d 461 (823)
T KOG2259|consen 388 EV-RRAAVASLCSLATSS-----PGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVD 461 (823)
T ss_pred HH-HHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHH
Confidence 45 888888877655543 5566777777765433 4578888888887765 344567778888877889999
Q ss_pred HHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHHh-cCChhHHHHHHHHH
Q psy6263 727 VAHNAIFSMGLVGAGTNN---ARLATMLRQLAQYH-VKNTGHLFMVRIAQ 772 (913)
Q Consensus 727 Vr~~AiiALGlV~aGtnn---~ri~~~Lr~L~~~~-~~d~~~~f~~~iAq 772 (913)
||.+..--|+..-.-+-| --+..+|+.|.+|- .+|.-.+-+.+|+|
T Consensus 462 vRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGq 511 (823)
T KOG2259|consen 462 VREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQ 511 (823)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhc
Confidence 998887766655444332 35778888888764 34444555666664
No 52
>KOG2023|consensus
Probab=80.81 E-value=39 Score=41.32 Aligned_cols=323 Identities=20% Similarity=0.202 Sum_probs=158.3
Q ss_pred chh-hHHHHHHhhhhhcccCCC----ccccccccccCchhhHHHHHHHHHHHHhcCCCCCchh----HHHHHHHhhcCCC
Q psy6263 386 QHG-MLSAAASLGLIYLWDVDG----GLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDP----ALALLSDYVLNDS 456 (913)
Q Consensus 386 ~~~-k~sA~aslGlI~~~~~~~----~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~----~l~lL~~~L~~~~ 456 (913)
+|. +-..+|++++...=--++ .+-+|.+.|.+..=.+|-++++|+|.|.-|-++-.-| .+.+|...|.++.
T Consensus 368 dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKk 447 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKK 447 (885)
T ss_pred cccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCc
Confidence 343 344456777644221122 3445566666766678999999999998776554323 4445555567787
Q ss_pred HHHHHHHHHHHHH----HhccCCCH---HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCc
Q psy6263 457 ITLRIGAVLGLGL----AYAGTKRQ---EVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPV 529 (913)
Q Consensus 457 ~~v~~gA~LGLGl----ay~Gs~~e---~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~ 529 (913)
+.+|.-.|--|+= +..-+..+ ++++-|+..+.|++. .|.-+|+.|..-. -+++.+++..++.
T Consensus 448 plVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK--~VQEAAcsAfAtl-----eE~A~~eLVp~l~---- 516 (885)
T KOG2023|consen 448 PLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNK--KVQEAACSAFATL-----EEEAGEELVPYLE---- 516 (885)
T ss_pred cceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccH--HHHHHHHHHHHHH-----HHhccchhHHHHH----
Confidence 8888777666653 11122112 344444445556543 3555777776533 3344455555543
Q ss_pred CcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccC-CHHH-HHHHHhhhhccCCCCC
Q psy6263 530 SELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSG-DVLV-VQEFLHVCSEHYTPTT 607 (913)
Q Consensus 530 ~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTG-n~~~-Iq~LLh~~~~~~~~~~ 607 (913)
.|-.-+ ..++-.|.+.+ |.-..|.+.+. |. ++|.. |.-+ ||.|+.=+.+.-.
T Consensus 517 ------~IL~~l--~~af~kYQ~KN--------LlILYDAIgtl----Ad---svg~~Ln~~~YiqiLmPPLi~KW~--- 570 (885)
T KOG2023|consen 517 ------YILDQL--VFAFGKYQKKN--------LLILYDAIGTL----AD---SVGHALNKPAYIQILMPPLIEKWE--- 570 (885)
T ss_pred ------HHHHHH--HHHHHHHhhcc--------eehHHHHHHHH----HH---HHHHhcCcHHHHHHhccHHHHHHH---
Confidence 222221 22333344332 11112222221 11 12211 2222 4444332221111
Q ss_pred cccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhh-hhHHH----HHHHHHHHhhcCcccccccHHHHHH
Q psy6263 608 SSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDL-SSMQA----VAALGVAVVALGEEIGSEMSTRIFG 682 (913)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv-~~~~a----~~~Lgiali~~ge~ig~em~~r~~~ 682 (913)
+- ++ +++|. +...| +.+||-.+..+.+++ -+.+.|+++
T Consensus 571 ------------------------------~l-sd-----~DKdLfPLLEClSsia~AL~~gF~P~~~~V-y~Rc~~il~ 613 (885)
T KOG2023|consen 571 ------------------------------LL-SD-----SDKDLFPLLECLSSIASALGVGFLPYAQPV-YQRCFRILQ 613 (885)
T ss_pred ------------------------------hc-Cc-----ccchHHHHHHHHHHHHHHHhccccccCHHH-HHHHHHHHH
Confidence 00 00 01221 22223 234555555555444 445666666
Q ss_pred HHh----cc-CChhH----HhHhHHHH--------HHhhcCC---CchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCC
Q psy6263 683 QLG----RY-GEPTV----RRAVPLAI--------ALCSMSN---PALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGT 742 (913)
Q Consensus 683 ~Ll----~~-~~~~v----R~~a~LAL--------gL~~as~---~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGt 742 (913)
+-+ +. .++.+ |-.+.-+| ||-+-.. .+.++.+.|...+.|..++|||.+.-=||=+..-.
T Consensus 614 ~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c 693 (885)
T KOG2023|consen 614 KTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKAC 693 (885)
T ss_pred HHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 332 11 11211 22222333 3332222 24479999999999999999999865555433221
Q ss_pred C---hhHHHHHHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCce
Q psy6263 743 N---NARLATMLRQLAQYH-VKNTGHLFMVRIAQGLTHMGKGTV 782 (913)
Q Consensus 743 n---n~ri~~~Lr~L~~~~-~~d~~~~f~~~iAqGLl~~Gkg~~ 782 (913)
. -|.++.++.-|..-- .+...+-..+.-|.|.+.+-.|.-
T Consensus 694 ~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~ 737 (885)
T KOG2023|consen 694 FEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLK 737 (885)
T ss_pred HHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchh
Confidence 1 245666666665222 122335677888999888755543
No 53
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=80.24 E-value=2.6 Score=30.48 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=17.5
Q ss_pred HHHHHhhccCccHHHHHHHHHHHHHhh
Q psy6263 713 IDVLNKYSHDLDEEVAHNAIFSMGLVG 739 (913)
Q Consensus 713 id~L~~~s~D~d~~Vr~~AiiALGlV~ 739 (913)
+..|.++..|++..||.+|+.++|-+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 445566666777777777777777553
No 54
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=79.95 E-value=64 Score=36.32 Aligned_cols=139 Identities=21% Similarity=0.171 Sum_probs=69.6
Q ss_pred HHHHHHhhcCCCHH--HHHHHHHHHHHHhcc--CCCHHHHHHHHHhh----cCCCCcHHHHHHHHHHHHHH-HhcCCCHH
Q psy6263 445 LALLSDYVLNDSIT--LRIGAVLGLGLAYAG--TKRQEVVTLLLPVL----TDRKSTPEVVAFAAVAASLI-YVGTGYHE 515 (913)
Q Consensus 445 l~lL~~~L~~~~~~--v~~gA~LGLGlay~G--s~~e~v~e~L~~~L----~d~~~~~ev~~~A~laLGLi-~lGs~n~~ 515 (913)
+..+...++..+.. .....++||=.+-+| ...+++++.+.|+| .|.+....+...++.+||++ |+|..+.+
T Consensus 88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~ 167 (309)
T PF05004_consen 88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEE 167 (309)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChh
Confidence 33344444444332 333344555555555 44567887777666 45544444434455577775 66777777
Q ss_pred HHH---HHHH--HHHcC--CcCc---ccc--cchhhHHHH-HHHHHhcCCcc-----cHHHH---HHHHhcCCChhhhhH
Q psy6263 516 VAS---AILQ--TLIEL--PVSE---LQD--GHYSRFLPL-ALAITYLGKKD-----AIDTT---LAALEVLPDPFRSMA 574 (913)
Q Consensus 516 v~~---~lL~--~l~~~--~~~~---~~~--e~i~r~~~l-gLgLl~~G~~e-----~~~~l---l~~L~~~~~pi~r~~ 574 (913)
.+. ..++ +.... .... ... .+-...+++ +-||+..--.. ..+.. +-.+....+.-+|.+
T Consensus 168 ~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiA 247 (309)
T PF05004_consen 168 ETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIA 247 (309)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 777 4444 22221 1111 111 022333333 45766633222 11222 222334667778888
Q ss_pred HHHHHHHHH
Q psy6263 575 KMMLKMCAY 583 (913)
Q Consensus 575 ~~~~lglAy 583 (913)
+.-++++.|
T Consensus 248 AGEaiAll~ 256 (309)
T PF05004_consen 248 AGEAIALLY 256 (309)
T ss_pred HHHHHHHHH
Confidence 877777776
No 55
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=76.97 E-value=9.9 Score=47.39 Aligned_cols=76 Identities=22% Similarity=0.226 Sum_probs=59.3
Q ss_pred HHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc----hhHHHHHHhhccCccHHHHHHHHHHHHHhh
Q psy6263 664 AVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA----LNVIDVLNKYSHDLDEEVAHNAIFSMGLVG 739 (913)
Q Consensus 664 ali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~----~~vid~L~~~s~D~d~~Vr~~AiiALGlV~ 739 (913)
.++..++-+ +.+...+.+++++.+++||+.|++|++=+|-=.+. ...++.|.-++.|+|+.|..||.+++.-+.
T Consensus 117 s~l~~~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 117 SLLRVKELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HhcChHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 345554433 33566678889999999999999999999944433 347778888888999999999999999988
Q ss_pred CC
Q psy6263 740 AG 741 (913)
Q Consensus 740 aG 741 (913)
.-
T Consensus 195 ~e 196 (757)
T COG5096 195 PE 196 (757)
T ss_pred hh
Confidence 65
No 56
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=76.57 E-value=33 Score=36.06 Aligned_cols=65 Identities=20% Similarity=0.100 Sum_probs=46.8
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCC---c--------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCC
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNP---A--------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAG 741 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~---~--------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aG 741 (913)
....+...+.+.+|.+|..++-.+..+.-..+ . ..+...+.+...|++++||..|.-++..+.-.
T Consensus 132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 36677778888999999988877777664444 1 35788888899999999999998777777543
No 57
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=75.74 E-value=21 Score=36.56 Aligned_cols=86 Identities=16% Similarity=0.078 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCC---CchhHHHHHHhhccCccHHHHHH
Q psy6263 654 SMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSN---PALNVIDVLNKYSHDLDEEVAHN 730 (913)
Q Consensus 654 ~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~---~~~~vid~L~~~s~D~d~~Vr~~ 730 (913)
|-.++.++|-.++..+.-+ |.....+-..+++.+|.||+.+..+|.=+-... ....++..+.+...|.++.||..
T Consensus 5 R~n~i~~l~DL~~r~~~~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 5 RNNAIIALGDLCIRYPNLV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HHHHHHHHHHHHHhCcHHH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHH
Confidence 6667888888888875432 223344555678899999999988888765432 23355455556668999999999
Q ss_pred HHHHHHHhhCC
Q psy6263 731 AIFSMGLVGAG 741 (913)
Q Consensus 731 AiiALGlV~aG 741 (913)
|...+.=+...
T Consensus 83 A~~~~~e~~~~ 93 (178)
T PF12717_consen 83 ARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHh
Confidence 98888777765
No 58
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=75.13 E-value=12 Score=34.22 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=46.9
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccCccHHHHHHHHHHHHHh
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHDLDEEVAHNAIFSMGLV 738 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D~d~~Vr~~AiiALGlV 738 (913)
.+.+-.++.+.++.+|..++-+|+-++.+.+. ..++..|.++.++.+..++..|..+++-+
T Consensus 51 i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 51 LPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 44555667788999999999999999876642 24577788888888888988887777644
No 59
>KOG1824|consensus
Probab=74.90 E-value=2.6e+02 Score=36.06 Aligned_cols=310 Identities=20% Similarity=0.144 Sum_probs=146.9
Q ss_pred HHHHHHHHHhccCCCHHH-HHHHHHhhcCCC---Cc----HH----H-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCC
Q psy6263 462 GAVLGLGLAYAGTKRQEV-VTLLLPVLTDRK---ST----PE----V-VAFAAVAASLIYVGTGYHEVASAILQTLIELP 528 (913)
Q Consensus 462 gA~LGLGlay~Gs~~e~v-~e~L~~~L~d~~---~~----~e----v-~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~ 528 (913)
.+++.+=.|.++|..++. +..|...+..+- +. -. . .++|++... ++..+..++..+++-++...
T Consensus 754 ~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~---~~~~s~s~a~kl~~~~~s~~ 830 (1233)
T KOG1824|consen 754 SALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCA---CPQKSKSLATKLIQDLQSPK 830 (1233)
T ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHh---ccccchhHHHHHHHHHhCCC
Confidence 455666667788888765 777777665321 11 01 1 123333322 34445567777877777522
Q ss_pred cCcccccchhhHHHHHHHHHhcCCcc-----cHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCH-HHHHHHHhhhhcc
Q psy6263 529 VSELQDGHYSRFLPLALAITYLGKKD-----AIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDV-LVVQEFLHVCSEH 602 (913)
Q Consensus 529 ~~~~~~e~i~r~~~lgLgLl~~G~~e-----~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~-~~Iq~LLh~~~~~ 602 (913)
.++ .+.-|+-+.+|=+-.|... --+.+++.+. +++.-.+-++.+|+|- .+.||. .=+..+|+-...+
T Consensus 831 ---s~~-~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~-sp~edvksAAs~ALGs--l~vgnl~~yLpfil~qi~sq 903 (1233)
T KOG1824|consen 831 ---SSD-SIKVFALLSLGELGRRKDLSPQNELKDTIIEAFN-SPSEDVKSAASYALGS--LAVGNLPKYLPFILEQIESQ 903 (1233)
T ss_pred ---Cch-hHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcC-CChHHHHHHHHHHhhh--hhcCchHhHHHHHHHHHhcc
Confidence 223 6777777788887666543 3334444443 3444556666666554 455653 2233333333211
Q ss_pred CCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhh---h--hHHHH-HHHHHHHhhcCccccccc
Q psy6263 603 YTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDL---S--SMQAV-AALGVAVVALGEEIGSEM 676 (913)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv---~--~~~a~-~~Lgiali~~ge~ig~em 676 (913)
... .+-.=-.+++- ..|.+++.. +..-++-|.--..+. . .|..+ -.||-...-. ||-
T Consensus 904 pk~----QyLLLhSlkev---i~~~svd~~-----~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e-----pes 966 (1233)
T KOG1824|consen 904 PKR----QYLLLHSLKEV---IVSASVDGL-----KPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE-----PES 966 (1233)
T ss_pred hHh----HHHHHHHHHHH---HHHhccchh-----hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC-----hHH
Confidence 100 00000000000 000011000 000111221000111 0 22222 2455443332 455
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCch------hHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChh-HHHH
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL------NVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNA-RLAT 749 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~------~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~-ri~~ 749 (913)
.+--++.++.++.++.|..+.-|+-+.-.-.|.. +-|.-..+...|+|..|||.|+.++--+. .|-| -|..
T Consensus 967 LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaa--hNKpslIrD 1044 (1233)
T KOG1824|consen 967 LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAA--HNKPSLIRD 1044 (1233)
T ss_pred HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH--ccCHhHHHH
Confidence 4555778888888888887644433322222221 22223334457999999999988765443 3433 2444
Q ss_pred HHHHHHHHhcCChhHH-HHHHHHHHHhhcCCCceeccccc--CCCC-CCChHHHHHHHHHHHHhhc
Q psy6263 750 MLRQLAQYHVKNTGHL-FMVRIAQGLTHMGKGTVSLSPFH--TDRQ-ILNPVALAGLLVVLTSFLD 811 (913)
Q Consensus 750 ~Lr~L~~~~~~d~~~~-f~~~iAqGLl~~Gkg~~tLsp~~--sd~~-~~~~~alagLl~~l~~~l~ 811 (913)
+|..|----+.....+ =.+ +.+.+.||. -|.| -+++.|.=++.+.+=.++|
T Consensus 1045 llpeLLp~Ly~eTkvrkelI-----------reVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld 1099 (1233)
T KOG1824|consen 1045 LLPELLPLLYSETKVRKELI-----------REVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLD 1099 (1233)
T ss_pred HHHHHHHHHHHhhhhhHhhh-----------hhhcccCccccccchHHHHHHHHHHHHHHHHhhhh
Confidence 4444332211111111 111 233455664 2334 4788888898888877766
No 60
>KOG1059|consensus
Probab=73.61 E-value=2.5e+02 Score=35.19 Aligned_cols=276 Identities=15% Similarity=0.128 Sum_probs=146.4
Q ss_pred hhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC--HHHHHHHHHhhcCCCCcHHHH
Q psy6263 420 DYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR--QEVVTLLLPVLTDRKSTPEVV 497 (913)
Q Consensus 420 ~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~--e~v~e~L~~~L~d~~~~~ev~ 497 (913)
...+.|-+.+..-.|..+. ...-.+.++..-+. ++.....|.+|+ ||...+|.+ .|++..+...|..+.. -+.
T Consensus 87 ~~krigylaa~qSf~~~td-vlmL~tn~~rkdl~-S~n~ye~giAL~-GLS~fvTpdLARDLa~Dv~tLL~sskp--YvR 161 (877)
T KOG1059|consen 87 QQKRIGYLAASQSFHDDTD-VLMLTTNLLRKDLN-SSNVYEVGLALS-GLSCIVTPDLARDLADDVFTLLNSSKP--YVR 161 (877)
T ss_pred HHHHHhHHHHHHhhcCCcc-HHHHHHHHHHHHhc-cCccchhhheec-ccccccCchhhHHHHHHHHHHHhcCch--HHH
Confidence 5667788877777766531 11112222333333 445667788787 888899987 6888888877765443 233
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCc-----ccHHHHHHHHhcCCChhhh
Q psy6263 498 AFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKK-----DAIDTTLAALEVLPDPFRS 572 (913)
Q Consensus 498 ~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~-----e~~~~ll~~L~~~~~pi~r 572 (913)
.=|.+.|==||+-- .+++......++++-+ ..+ +-...+|+++-|=...+. ..++.+.+.|.++
T Consensus 162 KkAIl~lykvFLkY--PeAlr~~FprL~EkLe--DpD-p~V~SAAV~VICELArKnPknyL~LAP~ffkllttS------ 230 (877)
T KOG1059|consen 162 KKAILLLYKVFLKY--PEALRPCFPRLVEKLE--DPD-PSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTS------ 230 (877)
T ss_pred HHHHHHHHHHHHhh--hHhHhhhHHHHHHhcc--CCC-chHHHHHHHHHHHHHhhCCcccccccHHHHHHHhcc------
Confidence 45777777778754 4888888888887522 122 445555555544433332 1334444433332
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHhhhh--ccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhh--
Q psy6263 573 MAKMMLKMCAYAGSGDVLVVQEFLHVCS--EHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEK-- 648 (913)
Q Consensus 573 ~~~~~~lglAyaGTGn~~~Iq~LLh~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 648 (913)
.|+=.+-+++++.. ..++++.- ++ ...+=.+-+++
T Consensus 231 --------------sNNWmLIKiiKLF~aLtplEPRLg--------------------------KK-Lieplt~li~sT~ 269 (877)
T KOG1059|consen 231 --------------SNNWVLIKLLKLFAALTPLEPRLG--------------------------KK-LIEPITELMESTV 269 (877)
T ss_pred --------------CCCeehHHHHHHHhhccccCchhh--------------------------hh-hhhHHHHHHHhhH
Confidence 23212222223221 11221110 00 00000000000
Q ss_pred hhhhhhHHHH-HHHHH-HHhhcCcccccc-cHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCch--hHHHHHHhhccCc
Q psy6263 649 EKDLSSMQAV-AALGV-AVVALGEEIGSE-MSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL--NVIDVLNKYSHDL 723 (913)
Q Consensus 649 ~~dv~~~~a~-~~Lgi-ali~~ge~ig~e-m~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~--~vid~L~~~s~D~ 723 (913)
.-.+ .+.|+ ++++. .+.+++++-..- .|..-+..+..+.|++.||-+++|++-+.--.|.. .--|...+...|.
T Consensus 270 AmSL-lYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~Dk 348 (877)
T KOG1059|consen 270 AMSL-LYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDK 348 (877)
T ss_pred HHHH-HHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccC
Confidence 0000 11221 11111 111222332222 26666778889999999999999999998777753 5556667777899
Q ss_pred cHHHHHHHH-HHHHHhhCCCChhHHHHHHHHHHHH
Q psy6263 724 DEEVAHNAI-FSMGLVGAGTNNARLATMLRQLAQY 757 (913)
Q Consensus 724 d~~Vr~~Ai-iALGlV~aGtnn~ri~~~Lr~L~~~ 757 (913)
|..+|.-|+ +-.|||.- ..+..+-+.|..+
T Consensus 349 D~SIRlrALdLl~gmVsk----kNl~eIVk~LM~~ 379 (877)
T KOG1059|consen 349 DESIRLRALDLLYGMVSK----KNLMEIVKTLMKH 379 (877)
T ss_pred CchhHHHHHHHHHHHhhh----hhHHHHHHHHHHH
Confidence 999997764 55666652 2345555556554
No 61
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=73.15 E-value=2.5e+02 Score=35.03 Aligned_cols=305 Identities=13% Similarity=0.021 Sum_probs=137.5
Q ss_pred ccccccchhhHHHHHHhhhhhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHH
Q psy6263 380 WMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITL 459 (913)
Q Consensus 380 wl~k~~~~~k~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v 459 (913)
.+....++...-..++......|+.++|...+++.+...... ..+.+.+|.++...+ +.+.++..+..-+.-.....
T Consensus 68 ~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~--~~a~~~la~~l~~~g-~~~~Ai~~l~~Al~l~P~~~ 144 (656)
T PRK15174 68 RVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ--PEDVLLVASVLLKSK-QYATVADLAEQAWLAFSGNS 144 (656)
T ss_pred HHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcH
Confidence 344444444444444444455677777777777766532222 234455555543322 23556666666655322221
Q ss_pred HHHHHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccch
Q psy6263 460 RIGAVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHY 537 (913)
Q Consensus 460 ~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i 537 (913)
.+...+|-++...++ ++..+.+...+. ++. +.+. -..+ ..+...++.+-....+..+..... ... .
T Consensus 145 --~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a----~~~~-~~l~~~g~~~eA~~~~~~~l~~~~--~~~--~ 212 (656)
T PRK15174 145 --QIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDM----IATC-LSFLNKSRLPEDHDLARALLPFFA--LER--Q 212 (656)
T ss_pred --HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHH----HHHH-HHHHHcCCHHHHHHHHHHHHhcCC--Ccc--h
Confidence 223344444555554 334444444432 221 1111 1111 124445554444444444433210 111 1
Q ss_pred hhHHHHHHHHHhcCCcccHHHHHHHHhcC-CChhhhhHHHHHHHHHHhccCCHH-----HHHHHHhhhhccCCCCCcccc
Q psy6263 538 SRFLPLALAITYLGKKDAIDTTLAALEVL-PDPFRSMAKMMLKMCAYAGSGDVL-----VVQEFLHVCSEHYTPTTSSAK 611 (913)
Q Consensus 538 ~r~~~lgLgLl~~G~~e~~~~ll~~L~~~-~~pi~r~~~~~~lglAyaGTGn~~-----~Iq~LLh~~~~~~~~~~~~~~ 611 (913)
.....++..+.-.|+.+.+...++..... ++. ......+|.+|...|+.. ++..+-..+.-
T Consensus 213 ~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---------- 279 (656)
T PRK15174 213 ESAGLAVDTLCAVGKYQEAIQTGESALARGLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF---------- 279 (656)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh----------
Confidence 11122233444556555555555444332 221 223344667777777653 33333332211
Q ss_pred cccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChh
Q psy6263 612 EETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPT 691 (913)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~ 691 (913)
.++ ...+...+|.++...|+ .+.+...+...++....+
T Consensus 280 -------------------------------------~P~--~~~a~~~lg~~l~~~g~---~~eA~~~l~~al~l~P~~ 317 (656)
T PRK15174 280 -------------------------------------NSD--NVRIVTLYADALIRTGQ---NEKAIPLLQQSLATHPDL 317 (656)
T ss_pred -------------------------------------CCC--CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCC
Confidence 122 23567788999998885 466778888877643222
Q ss_pred HHhHhHHHHHHhhcCCCchhHHHHHHhhc-cCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q psy6263 692 VRRAVPLAIALCSMSNPALNVIDVLNKYS-HDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQY 757 (913)
Q Consensus 692 vR~~a~LALgL~~as~~~~~vid~L~~~s-~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~~~ 757 (913)
.....-++..+...|.. ..+++.+.+.. .+++.. ......|..+...|..+ +-...+++..+.
T Consensus 318 ~~a~~~La~~l~~~G~~-~eA~~~l~~al~~~P~~~-~~~~~~a~al~~~G~~d-eA~~~l~~al~~ 381 (656)
T PRK15174 318 PYVRAMYARALRQVGQY-TAASDEFVQLAREKGVTS-KWNRYAAAALLQAGKTS-EAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCccch-HHHHHHHHHHHHCCCHH-HHHHHHHHHHHh
Confidence 22222344444444443 34555555544 234332 11122244444555333 333445554433
No 62
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=73.11 E-value=5 Score=32.55 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=12.3
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHH
Q psy6263 479 VVTLLLPVLTDRKSTPEVVAFAAVAAS 505 (913)
Q Consensus 479 v~e~L~~~L~d~~~~~ev~~~A~laLG 505 (913)
++..|.+.+.|++. +|...|+.|||
T Consensus 29 ~~~~L~~~L~d~~~--~VR~~A~~aLg 53 (55)
T PF13513_consen 29 LLPALIPLLQDDDD--SVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHTTSSSH--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCH--HHHHHHHHHHh
Confidence 44444444444332 45556666665
No 63
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=72.77 E-value=97 Score=37.73 Aligned_cols=84 Identities=13% Similarity=0.078 Sum_probs=50.7
Q ss_pred hcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHH-HHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccC
Q psy6263 509 VGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLAL-AITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSG 587 (913)
Q Consensus 509 lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgL-gLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTG 587 (913)
+-+.+.+.++.+.+.+.. .. . ...+ +-+ ++.+.|+++.+..+.+.+....-+-.-...++...++++-+=
T Consensus 320 lR~~~~e~l~~l~~~~~~-~~----~-~~r~---~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~P 390 (574)
T smart00638 320 LRTLSEEQLEQLWRQLYE-KK----K-KARR---IFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYP 390 (574)
T ss_pred HHhCCHHHHHHHHHHHHh-CC----H-HHHH---HHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcC
Confidence 445566666666665543 10 0 1111 112 567788988888888887765443333344444445555567
Q ss_pred CHHHHHHHHhhhhc
Q psy6263 588 DVLVVQEFLHVCSE 601 (913)
Q Consensus 588 n~~~Iq~LLh~~~~ 601 (913)
+...++.|+.+|..
T Consensus 391 t~~~l~~l~~l~~~ 404 (574)
T smart00638 391 TEEILKALFELAES 404 (574)
T ss_pred CHHHHHHHHHHhcC
Confidence 88888888888864
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=72.51 E-value=2.3e+02 Score=34.40 Aligned_cols=143 Identities=11% Similarity=-0.125 Sum_probs=72.5
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy6263 442 DPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASA 519 (913)
Q Consensus 442 d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~ 519 (913)
+.+...+..-+.-....... ...+|.++...++ ++..+.+...+. +++. . .+-+.+|.++.-.|+.+-...
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a--~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-~----~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQA--LGLLGLINTIHSEYIVGSLLFKQANLLSPIS-A----DIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHCCCHHHHHH
Confidence 45666776666543322232 2344555554444 455555555554 3321 2 244566777777777665555
Q ss_pred HHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCH-HHHHHHHh
Q psy6263 520 ILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDV-LVVQEFLH 597 (913)
Q Consensus 520 lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~-~~Iq~LLh 597 (913)
.++.+.+..+. + ... ....+..+...|+-+++...++.+....+|-. ......+|++|...|+. ++++.+..
T Consensus 394 ~~~~Al~l~P~---~-~~~-~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 394 TINECLKLDPT---R-AAA-GITKLWITYYHTGIDDAIRLGDELRSQHLQDN-PILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHhcCCC---C-hhh-HHHHHHHHHhccCHHHHHHHHHHHHHhccccC-HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55555542211 1 111 12223335556766666666655443222211 12335678889999996 44444433
No 65
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=72.43 E-value=2.8e+02 Score=35.26 Aligned_cols=318 Identities=12% Similarity=0.019 Sum_probs=150.4
Q ss_pred hhhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHH--H---HHHHHHHHHHHhc
Q psy6263 398 LIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSIT--L---RIGAVLGLGLAYA 472 (913)
Q Consensus 398 lI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~--v---~~gA~LGLGlay~ 472 (913)
+...|+.++++..+.+.+........ +.+.+|.+.... ...++++..+.....+++.. . .....+-+.+.-.
T Consensus 126 l~~~g~~~~Al~~l~~al~~~P~~~~--~~~~la~~l~~~-~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRAPQTQQ--YPTEYVQALRNN-RLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHC-CChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 34567888899888887753333322 223344443321 22356777777655432110 0 1111111111100
Q ss_pred cCC--C----HHHHHHHHHhh---c-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHH
Q psy6263 473 GTK--R----QEVVTLLLPVL---T-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLP 542 (913)
Q Consensus 473 Gs~--~----e~v~e~L~~~L---~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~ 542 (913)
-+. + +.+.+.+...+ . ++........+-.--+|.++ -.++.+.+...++.+..... ... ...+..
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll-~~g~~~eA~~~~~~ll~~~~--~~P-~~a~~~- 277 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL-ARDRYKDVISEYQRLKAEGQ--IIP-PWAQRW- 277 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhhccCC--CCC-HHHHHH-
Confidence 011 1 22233222222 2 11111121112111244443 34453444444555554211 001 222222
Q ss_pred HHHHHHhcCCcccHHHHHHHHhcCCChhh---hhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccc
Q psy6263 543 LALAITYLGKKDAIDTTLAALEVLPDPFR---SMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGT 619 (913)
Q Consensus 543 lgLgLl~~G~~e~~~~ll~~L~~~~~pi~---r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~ 619 (913)
+|...+..|+.+++...++.+...+ |.. .......++.+|.-.|.......++.-+.+...+ ...
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~----~~~------- 345 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP----FLR------- 345 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc----eEe-------
Confidence 3556677778788888888765433 221 1233445667788889875554444433321100 000
Q ss_pred cccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHH
Q psy6263 620 AASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLA 699 (913)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LA 699 (913)
.++.+...| +++ ...+...++-++...|+ .+.|...++.++.....+...-..+|
T Consensus 346 -----~~~~~~~~p---------------~~~--~~~a~~~~a~~l~~~g~---~~eA~~~l~~al~~~P~n~~l~~~lA 400 (765)
T PRK10049 346 -----LYGSPTSIP---------------NDD--WLQGQSLLSQVAKYSND---LPQAEMRARELAYNAPGNQGLRIDYA 400 (765)
T ss_pred -----ecCCCCCCC---------------Cch--HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 000000000 011 23345567777887775 56688888888876544444333333
Q ss_pred HHHhhcCCCchhHHHHHHhhc-cCccHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHhcCChhH
Q psy6263 700 IALCSMSNPALNVIDVLNKYS-HDLDEEVAHNAIFSMGLVGAGTNN-ARLATMLRQLAQYHVKNTGH 764 (913)
Q Consensus 700 LgL~~as~~~~~vid~L~~~s-~D~d~~Vr~~AiiALGlV~aGtnn-~ri~~~Lr~L~~~~~~d~~~ 764 (913)
..+...|.+ ..+++.|.+-. .+++. ..+.+++|++..+.++ .+...+++.+.+..-+|+.+
T Consensus 401 ~l~~~~g~~-~~A~~~l~~al~l~Pd~---~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 401 SVLQARGWP-RAAENELKKAEVLEPRN---INLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHhcCCH-HHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 333333443 35666665543 35654 2366777778877776 44556677776655555554
No 66
>KOG1517|consensus
Probab=70.48 E-value=10 Score=48.20 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=48.5
Q ss_pred HHHHhccCChhHHhHhHHHHHHhhcCCC-------chhHHHHHHhhccCccHHHHHHHHHHHHHhhCC
Q psy6263 681 FGQLGRYGEPTVRRAVPLAIALCSMSNP-------ALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAG 741 (913)
Q Consensus 681 ~~~Ll~~~~~~vR~~a~LALgL~~as~~-------~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aG 741 (913)
++||-...+|-.|.++|+|||.+..-.+ +..+.+.|.....|+.++||-+|+||||-..-+
T Consensus 605 le~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 605 LEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 4444443468899999999999986433 347888898888999999999999999976643
No 67
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=70.25 E-value=25 Score=36.07 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=56.8
Q ss_pred ChhHHhHhHHHHHHhhcCCCc--hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCC---hhHH-HHHHHHHHHHhcCCh
Q psy6263 689 EPTVRRAVPLAIALCSMSNPA--LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTN---NARL-ATMLRQLAQYHVKNT 762 (913)
Q Consensus 689 ~~~vR~~a~LALgL~~as~~~--~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtn---n~ri-~~~Lr~L~~~~~~d~ 762 (913)
+|.||..+..++|=++..-|+ ...++.|.+..+|.++.||.+|+..+.-+....- ...+ ..+++.+ -..||
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l---~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLL---VDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHH---cCCCH
Confidence 578999999999977766555 3677788888899999999999999887664321 1222 3333322 35566
Q ss_pred hHHHHHHHHHHHh
Q psy6263 763 GHLFMVRIAQGLT 775 (913)
Q Consensus 763 ~~~f~~~iAqGLl 775 (913)
..+-.++....=+
T Consensus 78 ~Ir~~A~~~~~e~ 90 (178)
T PF12717_consen 78 EIRSLARSFFSEL 90 (178)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555554433
No 68
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=69.89 E-value=1.4e+02 Score=33.93 Aligned_cols=210 Identities=20% Similarity=0.193 Sum_probs=111.7
Q ss_pred HHHHhcCCChhccHHHHHHHHHHHHhh------ccccccCCCchhhhh-hhHHHHHHHHhhcCCChhHHHHHHHHHHhee
Q psy6263 40 LVEKIKGSDKHLYLPALESMRDLIRTS------TTSMTSVPMPLKFLR-NHYGALKEACEKMTDQKPKKLLCSIISVLAM 112 (913)
Q Consensus 40 lv~~L~e~d~~l~~~AL~~L~~~i~~~------t~s~tsvpkplk~l~-~~~~~l~~~ye~~~~~~~r~l~a~i~S~l~~ 112 (913)
|..-++..|++|.-..|-.|++-...+ ...+.+..--.++.| ...+.|.++|..... ..+++...+..-+-
T Consensus 46 L~kAi~SgD~DLi~~vLl~L~~~l~~s~f~~il~~~p~a~~l~~~~~r~~~~~~L~~~y~q~d~--~~~~a~~~l~~~~~ 123 (319)
T PF04840_consen 46 LNKAIESGDTDLIYLVLLHLKRKLSLSQFFKILNQNPVASNLYKKYCREQDRELLKDFYYQEDR--FQELANLHLQEALS 123 (319)
T ss_pred HHHHHHcCCccHHHHHHHHHHHhCCHHHHHHHHHhCcchHHHHHHHHHhccHHHHHHHHHhcch--HHHHHHHHHHHHHh
Confidence 344556788888777777766543322 111122222234555 345567888876532 23444444433322
Q ss_pred ccCc--CchhhhhhhhhcCCCCCCCCcChHHHHHHHHHHHHHHhc---------cCChhHHHHHHHHHHHHHhccCCHHH
Q psy6263 113 SQDN--VEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATN---------KYEKPQLLELIEDIIQFDMKHNAEIQ 181 (913)
Q Consensus 113 ~~~~--~~~~~L~y~L~~~~~~~~~wg~eYvr~l~~~i~~~y~~~---------~~~~~~L~~lv~~iv~~~l~~n~e~e 181 (913)
+ .+ +..+.|+-+-.. +-..-.+ ++..+++++..+. .....-+..-|.+.+..|+.+|....
T Consensus 124 ~-~~~~~~~~~L~~a~~~---y~~~k~~----~f~~~~~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~ 195 (319)
T PF04840_consen 124 Q-KDVEEKISFLKQAQKL---YSKSKND----AFEAKLIEEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQ 195 (319)
T ss_pred C-CChHHHHHHHHHHHHH---HHhcchh----HHHHHHHHHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHH
Confidence 2 21 233334333321 1111012 3334455543332 11111123346667777888888888
Q ss_pred HHHH------------------HHhhCchhhHHHHHhc----cChHHHHHHHHhhc------ccCCC-hhhHHHHHHHHH
Q psy6263 182 ACDL------------------LMEIDHLELLDKHMDV----TNYPRVCLYLSNCA------LYVEE-PERSVITNGVLN 232 (913)
Q Consensus 182 Aidl------------------alE~~~ld~i~~~v~~----~~~~ri~~Yl~~~~------~~~~~-~~~~~vl~~~~~ 232 (913)
|-.+ +.+.++.|.|+++-.+ -.|......++... .|++. ++++ -++
T Consensus 196 A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~~~-----rv~ 270 (319)
T PF04840_consen 196 AEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPDEE-----RVE 270 (319)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCChHH-----HHH
Confidence 8665 4556777888877653 12333333333221 12111 1111 246
Q ss_pred HHhccCCHHHHHHHHHhcCCchhHHHHHhccC
Q psy6263 233 NYLKFKEYPRALTLALQLNDEPSVLKIFQLCE 264 (913)
Q Consensus 233 iy~~~~~~~~al~~al~L~d~~~v~~i~~~~~ 264 (913)
.|.+.++|.+|.+.|.+..|.+...+|.+.|.
T Consensus 271 ~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 271 MYLKCGDYKEAAQEAFKEKDIDLLKQILKRCP 302 (319)
T ss_pred HHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 78899999999999999999999999999974
No 69
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=69.74 E-value=48 Score=32.06 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhc-CCchhHHHHHhccCChhHHHHHH
Q psy6263 225 VITNGVLNNYLKFKEYPRALTLALQL-NDEPSVLKIFQLCEDPVVRKQLA 273 (913)
Q Consensus 225 ~vl~~~~~iy~~~~~~~~al~~al~L-~d~~~v~~i~~~~~d~~~~~Qia 273 (913)
.+.+.++-+|.+.++|-+|+.+++.- +|++...+.+++..++..-.+++
T Consensus 83 ~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~ 132 (140)
T smart00299 83 KLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVL 132 (140)
T ss_pred CcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHH
Confidence 35566777899999999999999986 99999999999987776655554
No 70
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=68.82 E-value=1.3e+02 Score=36.72 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=44.6
Q ss_pred HHhcCCCCCchhHHHHHHHhhcCCCHH-HHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCCCc--HHHHHHHHHHHHHHH
Q psy6263 432 IVNCGVRNECDPALALLSDYVLNDSIT-LRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKST--PEVVAFAAVAASLIY 508 (913)
Q Consensus 432 Li~aG~~~e~d~~l~lL~~~L~~~~~~-v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~~~--~ev~~~A~laLGLi~ 508 (913)
+..+|+. +++..+.+.+.+..-. .....++...+.++-+-++++.+.+.+.+.++.+. ..+...|.+++|-+-
T Consensus 350 l~~~GT~----~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv 425 (574)
T smart00638 350 VAQAGTP----PALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLV 425 (574)
T ss_pred HHhcCCH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence 4445653 5788888888775532 33344444344444567889999999888754322 224447778887543
No 71
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=68.64 E-value=2.9e+02 Score=33.90 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=14.6
Q ss_pred hHHHHHHhhccCc---cHHHHHHHHHHHHHh
Q psy6263 711 NVIDVLNKYSHDL---DEEVAHNAIFSMGLV 738 (913)
Q Consensus 711 ~vid~L~~~s~D~---d~~Vr~~AiiALGlV 738 (913)
.+++.|.++..+. ...+|..|+.||.-+
T Consensus 521 ~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~ 551 (618)
T PF01347_consen 521 ESIPVLLPYIEGKEEVPHFIRVAAIQALRRL 551 (618)
T ss_dssp GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTG
T ss_pred hhhHHHHhHhhhccccchHHHHHHHHHHHHH
Confidence 4555555554333 455566666666544
No 72
>KOG3616|consensus
Probab=66.64 E-value=50 Score=40.74 Aligned_cols=128 Identities=16% Similarity=0.107 Sum_probs=71.2
Q ss_pred cChHHHHHHHHHHHHHHhc--cCChhHHHHHHHHHHHHHhccCCHHHHHHHHHhhCchhhHHHHHhccChHHHHHHH--H
Q psy6263 137 GHEYVRQLEAEIAEEWATN--KYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYL--S 212 (913)
Q Consensus 137 g~eYvr~l~~~i~~~y~~~--~~~~~~L~~lv~~iv~~~l~~n~e~eAidlalE~~~ld~i~~~v~~~~~~ri~~Yl--~ 212 (913)
...|+-|-+.-|-+||.+. ...-.-...+|.+.-. +=+.+++..|++-+|.++|= .+....+..-+ .
T Consensus 1128 ~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~-weq~gd~rkav~~~lkinrd--------st~nd~l~e~~~~k 1198 (1636)
T KOG3616|consen 1128 AKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKE-WEQAGDWRKAVDALLKINRD--------STDNDALAEHCTEK 1198 (1636)
T ss_pred HHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHH-HHhcccHHHHHHHHhhhccC--------CCCcHHHHHHHHHH
Confidence 3579999999999999865 2223345567776643 77899999999999999762 21111111111 1
Q ss_pred h---hcccCCChhhHHHHHHHHHHHhccCCHHHHHHHHHhcCCchhHHHHHhccCChhHHHHHH
Q psy6263 213 N---CALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLA 273 (913)
Q Consensus 213 ~---~~~~~~~~~~~~vl~~~~~iy~~~~~~~~al~~al~L~d~~~v~~i~~~~~d~~~~~Qia 273 (913)
+ ..+++...++.++.-.+...+-.-+.+..+....+.++-.+...+-|-..+....++|+|
T Consensus 1199 aadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~~~keaida~~~~eewakakqva 1262 (1636)
T KOG3616|consen 1199 AADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFDLSKEAIDAFCEAEEWAKAKQVA 1262 (1636)
T ss_pred HHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 1 023333223334443333333344455555556665555555555454444444555543
No 73
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=66.61 E-value=4.1e+02 Score=34.97 Aligned_cols=158 Identities=12% Similarity=-0.023 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-HHHHHHHHHhhcCCCCcHHHHHHHH
Q psy6263 423 KAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-QEVVTLLLPVLTDRKSTPEVVAFAA 501 (913)
Q Consensus 423 k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~d~~~~~ev~~~A~ 501 (913)
...+.+.+|.+.... . .+.++..+...+..... ...-+++|.++.-.++ +++.+.+...+..+... .+.
T Consensus 476 ~~~a~~~LG~~l~~~-~-~~eAi~a~~~Al~~~Pd---~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-----~a~ 545 (987)
T PRK09782 476 DAAAWNRLAKCYRDT-L-PGVALYAWLQAEQRQPD---AWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-----EDL 545 (987)
T ss_pred CHHHHHHHHHHHHhC-C-cHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-----HHH
Confidence 556778888877652 2 24566756665543222 1246677776544444 34445444444322111 234
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhc-CCChhhhhHHHHHHH
Q psy6263 502 VAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEV-LPDPFRSMAKMMLKM 580 (913)
Q Consensus 502 laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~-~~~pi~r~~~~~~lg 580 (913)
+.+|.+++..++.+.....++.+.... . + .......++..+...|+.+.+...++.... .++ ......+|
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~---P-~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~----~~a~~~LA 616 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRG---L-G-DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS----ANAYVARA 616 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC---C-c-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----HHHHHHHH
Confidence 566777778888776666666555421 1 1 222233344444456887777666665544 333 23446678
Q ss_pred HHHhccCCHH-HHHHHHhhh
Q psy6263 581 CAYAGSGDVL-VVQEFLHVC 599 (913)
Q Consensus 581 lAyaGTGn~~-~Iq~LLh~~ 599 (913)
.++...|+.. +++.+-+.+
T Consensus 617 ~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 8889999874 444444444
No 74
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=66.60 E-value=78 Score=38.56 Aligned_cols=182 Identities=19% Similarity=0.182 Sum_probs=109.7
Q ss_pred ccccCchhhHHHHHHHHHHHHhcCCCCCchhHHH------HHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHh
Q psy6263 413 KYLYTSEDYIKAGALLALGIVNCGVRNECDPALA------LLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPV 486 (913)
Q Consensus 413 ~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~------lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~ 486 (913)
+-|.+.+.-+.+..+.-+|.|..+.. |--++-+ -|.+.|.+.+..+|..|.-.+|.+.-.-+-+|++..|+.-
T Consensus 695 PILrnkh~Kv~~nti~lvg~I~~~~p-eyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~Llnn 773 (975)
T COG5181 695 PILRNKHQKVVANTIALVGTICMNSP-EYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNN 773 (975)
T ss_pred HhhhhhhHHHhhhHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhc
Confidence 33445677788888888898875432 2112222 2445567788889999999999998777788999999988
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHh--cCCcc-----cHHHH
Q psy6263 487 LTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITY--LGKKD-----AIDTT 559 (913)
Q Consensus 487 L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~--~G~~e-----~~~~l 559 (913)
|.-..-..++ ..++|+|.|-=-.+--.+ +.+++..-+ +.+-.+..+.-=++.+.| .|.+. ..-.+
T Consensus 774 LkvqeRq~Rv--ctsvaI~iVae~cgpfsV----lP~lm~dY~--TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPl 845 (975)
T COG5181 774 LKVQERQQRV--CTSVAISIVAEYCGPFSV----LPTLMSDYE--TPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPL 845 (975)
T ss_pred chHHHHHhhh--hhhhhhhhhHhhcCchhh----HHHHHhccc--CchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 7521111223 455566654222222233 455554211 111123334333455544 34332 23334
Q ss_pred HHHHhcCCChhhhhHHHHH---HHHHHhccCCHHHHHHHHhhhhccC
Q psy6263 560 LAALEVLPDPFRSMAKMML---KMCAYAGSGDVLVVQEFLHVCSEHY 603 (913)
Q Consensus 560 l~~L~~~~~pi~r~~~~~~---lglAyaGTGn~~~Iq~LLh~~~~~~ 603 (913)
++.-..+.||.-|..++-+ +++.+-|||+.++.-.||.++-..+
T Consensus 846 leDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNI 892 (975)
T COG5181 846 LEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNI 892 (975)
T ss_pred HHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhc
Confidence 5555678899888877755 4566899999998888888886554
No 75
>KOG0212|consensus
Probab=66.10 E-value=3.1e+02 Score=33.40 Aligned_cols=66 Identities=20% Similarity=0.112 Sum_probs=45.9
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCCc------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCC
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTN 743 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtn 743 (913)
...+.+.+.+...+-|.+|-==+-+++-..|+ ..++.+|.+-..|++++|-.-+..-++=|..-.+
T Consensus 338 i~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 338 IEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 44455556666667777766556666666654 4899999998889999887777666666665444
No 76
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=65.15 E-value=3.4e+02 Score=33.47 Aligned_cols=127 Identities=16% Similarity=0.170 Sum_probs=83.9
Q ss_pred hhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHH
Q psy6263 649 EKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVA 728 (913)
Q Consensus 649 ~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr 728 (913)
++.+ ||.|....|+.- +-|||+-++.++-.=++..+-+-|-+-.+|+|++.--++--.++-+|..=...++.+|.
T Consensus 743 nKei-RR~A~~tfG~Is----~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQ 817 (975)
T COG5181 743 NKEI-RRNATETFGCIS----RAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQ 817 (975)
T ss_pred hHHH-HHhhhhhhhhHH----hhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHH
Confidence 3556 898988888763 45678766665555556666677888888888887555566788888775667889999
Q ss_pred HHHHHHHHHhhCCCChhHH---HHHHHHHHH-HhcCChhHH-----HHHHHHHHHhhcCCCce
Q psy6263 729 HNAIFSMGLVGAGTNNARL---ATMLRQLAQ-YHVKNTGHL-----FMVRIAQGLTHMGKGTV 782 (913)
Q Consensus 729 ~~AiiALGlV~aGtnn~ri---~~~Lr~L~~-~~~~d~~~~-----f~~~iAqGLl~~Gkg~~ 782 (913)
++++=||++..--++|.-. -.+.--|.. ...+||.++ .--|+++| +-|.|.-
T Consensus 818 nGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Ln--c~gtg~e 878 (975)
T COG5181 818 NGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLN--CPGTGDE 878 (975)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcC--CCCcccH
Confidence 9999999998765555321 111111111 135676643 34467777 7777754
No 77
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=64.95 E-value=10 Score=47.31 Aligned_cols=62 Identities=15% Similarity=0.091 Sum_probs=52.5
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhh
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVG 739 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~ 739 (913)
..+|.+=+++.||.||..|.=.|+.+-.+.=...+++++.+..+|..++||++|++|++=+.
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 34466667889999999888888888666666799999999999999999999999998777
No 78
>KOG0213|consensus
Probab=64.74 E-value=2.5e+02 Score=35.26 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=64.0
Q ss_pred hhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHH
Q psy6263 650 KDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAH 729 (913)
Q Consensus 650 ~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~ 729 (913)
+.+ ||+++...|+.-- -|||+-++.++-.=++..+-+-|-+-.+|+|++.-.++--.++-+|..=..-++.+|.+
T Consensus 939 K~i-RRaa~nTfG~Iak----aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQn 1013 (1172)
T KOG0213|consen 939 KEI-RRAAVNTFGYIAK----AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQN 1013 (1172)
T ss_pred HHH-HHHHHhhhhHHHH----hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHH
Confidence 455 8988888887643 45686555544444455566667778888888876666567777777656678899999
Q ss_pred HHHHHHHHhhCCCCh
Q psy6263 730 NAIFSMGLVGAGTNN 744 (913)
Q Consensus 730 ~AiiALGlV~aGtnn 744 (913)
+++=||.+..--+++
T Consensus 1014 GVLkalsf~Feyige 1028 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGE 1028 (1172)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999988754444
No 79
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=63.75 E-value=11 Score=27.24 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=21.0
Q ss_pred HHHHHHhccCChhHHhHhHHHHHHhh
Q psy6263 679 RIFGQLGRYGEPTVRRAVPLAIALCS 704 (913)
Q Consensus 679 r~~~~Ll~~~~~~vR~~a~LALgL~~ 704 (913)
..+-+++++.++.||.+++.|+|-++
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 34667889999999999999998764
No 80
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=61.33 E-value=38 Score=40.09 Aligned_cols=86 Identities=15% Similarity=0.048 Sum_probs=50.2
Q ss_pred HHHHhhCchhhHHHHHhccChHHHHHHHHhhcccCCChhhHHHHHHHHHHHhccCCHHHHHHHHHhcCCchhHHHHHhcc
Q psy6263 184 DLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLC 263 (913)
Q Consensus 184 dlalE~~~ld~i~~~v~~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~iy~~~~~~~~al~~al~L~d~~~v~~i~~~~ 263 (913)
+.||+.++++.-++...+...-.-+++|..+.. +.+-|+.+.++....+++..++.|++.++|.+...++|.++
T Consensus 355 ~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g------~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 355 DEALRQGNIELAEECYQKAKDFSGLLLLYSSTG------DREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHhhcCccccHHHHHHhC------CHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555555555554332222222222211 23456666677778889999999999999999988988875
Q ss_pred CChhHHHHHHHHHhhc
Q psy6263 264 EDPVVRKQLAYMAGRQ 279 (913)
Q Consensus 264 ~d~~~~~Qiaf~lar~ 279 (913)
. ++..|+..||.
T Consensus 429 ~----~~~~A~~~A~t 440 (443)
T PF04053_consen 429 G----RLPEAALFART 440 (443)
T ss_dssp T-----HHHHHHHHHH
T ss_pred C----CchHHHHHHHh
Confidence 3 35666777763
No 81
>KOG0211|consensus
Probab=61.11 E-value=56 Score=41.22 Aligned_cols=87 Identities=23% Similarity=0.224 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhh----cCCCchhHHHHHHhhccCccHHHHH
Q psy6263 654 SMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCS----MSNPALNVIDVLNKYSHDLDEEVAH 729 (913)
Q Consensus 654 ~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~----as~~~~~vid~L~~~s~D~d~~Vr~ 729 (913)
|+...-++....-.+|.++-.+.-+..+..+..+..|+||.+|+-.+--+- ++.-...+...|..+..|++.+||.
T Consensus 574 R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~ 653 (759)
T KOG0211|consen 574 RMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRY 653 (759)
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhH
Confidence 554444555444556777766667788999999999999999886665443 3333456777777777899999999
Q ss_pred HHHHHHHHhhC
Q psy6263 730 NAIFSMGLVGA 740 (913)
Q Consensus 730 ~AiiALGlV~a 740 (913)
.|+.|.|.+..
T Consensus 654 ~a~~a~~~i~l 664 (759)
T KOG0211|consen 654 RAILAFGSIEL 664 (759)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 82
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=60.67 E-value=22 Score=43.65 Aligned_cols=99 Identities=24% Similarity=0.290 Sum_probs=66.3
Q ss_pred chhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCC---CHHHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCCCcH
Q psy6263 418 SEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLND---SITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTP 494 (913)
Q Consensus 418 ~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~---~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~~~~ 494 (913)
.+...+.-+|-|||-+ |+. .++..|.+++... +..+|..|+.+|.-+ +-.+.+.+.+.|++++.|...+.
T Consensus 502 ~~~~~~~~~LkaLgN~--g~~----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~-~~~~~~~v~~~l~~I~~n~~e~~ 574 (618)
T PF01347_consen 502 GDEEEKIVYLKALGNL--GHP----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRL-AKHCPEKVREILLPIFMNTTEDP 574 (618)
T ss_dssp T-HHHHHHHHHHHHHH--T-G----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTG-GGT-HHHHHHHHHHHHH-TTS-H
T ss_pred cCHHHHHHHHHHhhcc--CCc----hhhHHHHhHhhhccccchHHHHHHHHHHHHH-hhcCcHHHHHHHHHHhcCCCCCh
Confidence 4568888999999966 543 3577888998876 467999999999843 44556789999999999877777
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q psy6263 495 EVVAFAAVAASLIYVGTGYHEVASAILQTLIE 526 (913)
Q Consensus 495 ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~ 526 (913)
|++.+|.+. ++--.-+...+..|.+.+..
T Consensus 575 EvRiaA~~~---lm~~~P~~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 575 EVRIAAYLI---LMRCNPSPSVLQRIAQSLWN 603 (618)
T ss_dssp HHHHHHHHH---HHHT---HHHHHHHHHHHTT
T ss_pred hHHHHHHHH---HHhcCCCHHHHHHHHHHHhh
Confidence 765555332 33444666777777777653
No 83
>KOG1060|consensus
Probab=59.98 E-value=4.6e+02 Score=33.29 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCch--hHHHHHHhhccCccHHHHHHHHHH
Q psy6263 657 AVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL--NVIDVLNKYSHDLDEEVAHNAIFS 734 (913)
Q Consensus 657 a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~--~vid~L~~~s~D~d~~Vr~~AiiA 734 (913)
++.+||-+-...++- ++.|+.-+=+|+...+..|-..+...|=.+---+|.. +++-+|.++........+++.|
T Consensus 412 aV~AiGrCA~~~~sv--~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~I-- 487 (968)
T KOG1060|consen 412 AVKAIGRCASRIGSV--TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGI-- 487 (968)
T ss_pred HHHHHHHHHHhhCch--hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhcee--
Confidence 455566554444432 5568888888888888888777766776666556655 4888888877433334444444
Q ss_pred HHHhhCCCCh---hHH-HHHHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCceecccccCCCCCCChHHHHHHHHHHHHh
Q psy6263 735 MGLVGAGTNN---ARL-ATMLRQLAQYH-VKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSF 809 (913)
Q Consensus 735 LGlV~aGtnn---~ri-~~~Lr~L~~~~-~~d~~~~f~~~iAqGLl~~Gkg~~tLsp~~sd~~~~~~~alagLl~~l~~~ 809 (913)
+-+.|..+ ||+ ..+||.+++.. .+++.+++- ++.+|-..+..++ .+..++---+|--.-
T Consensus 488 --iWLige~~e~vpri~PDVLR~laksFs~E~~evKlQ------ILnL~aKLyl~~~--------~~~kll~~Yv~~L~~ 551 (968)
T KOG1060|consen 488 --IWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQ------ILNLSAKLYLTNI--------DQTKLLVQYVFELAR 551 (968)
T ss_pred --eeeehhhhhhcchhchHHHHHHHHhhccccchhhHH------HHHhhhhheEech--------hhHHHHHHHHHHHhc
Confidence 34567776 453 57899999876 566666643 4556655555553 234444433444456
Q ss_pred hcccccccccchhHHHhhh
Q psy6263 810 LDTKNIILGKSHYLLYCLV 828 (913)
Q Consensus 810 l~~~~~i~~~~h~l~~~l~ 828 (913)
+|+.-.|-++..|+.-+++
T Consensus 552 yD~sYDiRDRaRF~r~l~~ 570 (968)
T KOG1060|consen 552 YDLSYDIRDRARFLRQLIS 570 (968)
T ss_pred cCCCcchhHHHHHHHHHhc
Confidence 6666666666666555444
No 84
>KOG0211|consensus
Probab=56.10 E-value=74 Score=40.19 Aligned_cols=100 Identities=10% Similarity=0.017 Sum_probs=73.3
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhh--cCCC--chhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHH
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCS--MSNP--ALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLR 752 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~--as~~--~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr 752 (913)
.++.+...++. +--.|+...+++..+. .|++ ...++..+..+.+|++++||.||+-.+--++..-..+..-..++
T Consensus 559 i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~ 637 (759)
T KOG0211|consen 559 IPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVL 637 (759)
T ss_pred hHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHH
Confidence 45555555552 3457999999988776 2444 24788888899999999999999999999988766554444444
Q ss_pred HHHHHh--cCChhHHHHHHHHHHHhhc
Q psy6263 753 QLAQYH--VKNTGHLFMVRIAQGLTHM 777 (913)
Q Consensus 753 ~L~~~~--~~d~~~~f~~~iAqGLl~~ 777 (913)
++...- ..|.+++|.+..|+|.+.+
T Consensus 638 pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 638 PLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHhccCcccchhHHHHHHHHHHHH
Confidence 444433 5567799999999998865
No 85
>KOG3617|consensus
Probab=55.19 E-value=55 Score=41.07 Aligned_cols=98 Identities=15% Similarity=0.079 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhhCchhhHHHHHhccChHHHHHHHHhhcccCCC----hhhHHHHHHHHHHHhccCC
Q psy6263 164 ELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEE----PERSVITNGVLNNYLKFKE 239 (913)
Q Consensus 164 ~lv~~iv~~~l~~n~e~eAidlalE~~~ld~i~~~v~~~~~~ri~~Yl~~~~~~~~~----~~~~~vl~~~~~iy~~~~~ 239 (913)
.|+.++-+||..|.+|.-|+.|++-++.+..-.++....|.+-...+-.-+.+...+ .+|.++|+.+.+.+.+++.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~ 1160 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA 1160 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 578899999999999999999999999988777777766654433443343333322 3578999999999999999
Q ss_pred HHHHHHHHHhcCCchh-HHHHHh
Q psy6263 240 YPRALTLALQLNDEPS-VLKIFQ 261 (913)
Q Consensus 240 ~~~al~~al~L~d~~~-v~~i~~ 261 (913)
|..|....-+-+|--. .+.+++
T Consensus 1161 Yh~AtKKfTQAGdKl~AMraLLK 1183 (1416)
T KOG3617|consen 1161 YHAATKKFTQAGDKLSAMRALLK 1183 (1416)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHh
Confidence 9888887777766533 333444
No 86
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=55.17 E-value=5.1e+02 Score=32.30 Aligned_cols=280 Identities=13% Similarity=0.002 Sum_probs=148.5
Q ss_pred HhhhhhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccC
Q psy6263 395 SLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGT 474 (913)
Q Consensus 395 slGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs 474 (913)
.+-..+.|+.+++++++..-+-....+. .+++.+|....-. .+.+.++..+...+....... .+...+|.++...
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~--~~l~~l~~~~l~~-g~~~~A~~~l~~~l~~~P~~~--~a~~~la~~l~~~ 123 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGR--DLLRRWVISPLAS-SQPDAVLQVVNKLLAVNVCQP--EDVLLVASVLLKS 123 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCch--hHHHHHhhhHhhc-CCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHc
Confidence 4455677999999999888876544444 4444444443322 234678888888766432222 2345667776666
Q ss_pred CC-HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCC
Q psy6263 475 KR-QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGK 552 (913)
Q Consensus 475 ~~-e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~ 552 (913)
++ +++.+.+...+. ++. .. .+-..+|-++...++.+-....+..+..... .+ .-.. ..+ ..+...|+
T Consensus 124 g~~~~Ai~~l~~Al~l~P~-~~----~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P---~~-~~a~-~~~-~~l~~~g~ 192 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSG-NS----QIFALHLRTLVLMDKELQAISLARTQAQEVP---PR-GDMI-ATC-LSFLNKSR 192 (656)
T ss_pred CCHHHHHHHHHHHHHhCCC-cH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhCC---CC-HHHH-HHH-HHHHHcCC
Confidence 66 456666666664 332 12 2445667777777776555454444432111 11 1111 111 23444566
Q ss_pred cccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHH-HHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCC
Q psy6263 553 KDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVL-VVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTES 631 (913)
Q Consensus 553 ~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~-~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (913)
-+.+....+.+.... |..........+.+|...|+.. +++.+-..+..+.
T Consensus 193 ~~eA~~~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p---------------------------- 243 (656)
T PRK15174 193 LPEDHDLARALLPFF-ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL---------------------------- 243 (656)
T ss_pred HHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------------------------
Confidence 566666666654432 1111112234567888889864 4444333332110
Q ss_pred CchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccc-cccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCch
Q psy6263 632 TPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIG-SEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL 710 (913)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig-~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~ 710 (913)
+ ...+...+|.++...|+.-. .+.+...+.+.+.....+.+...-+|..+...|.. .
T Consensus 244 ------------------~---~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~-~ 301 (656)
T PRK15174 244 ------------------D---GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN-E 301 (656)
T ss_pred ------------------C---CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH-H
Confidence 1 11234568999998886421 01378888888876544555555555555544443 3
Q ss_pred hHHHHHHhhc-cCccHHHHHHHHHHHHHhhCCCCh
Q psy6263 711 NVIDVLNKYS-HDLDEEVAHNAIFSMGLVGAGTNN 744 (913)
Q Consensus 711 ~vid~L~~~s-~D~d~~Vr~~AiiALGlV~aGtnn 744 (913)
.++..+.+.. .+++... +...+|.+....++
T Consensus 302 eA~~~l~~al~l~P~~~~---a~~~La~~l~~~G~ 333 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPY---VRAMYARALRQVGQ 333 (656)
T ss_pred HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCC
Confidence 5556665543 2554432 33345555555554
No 87
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=53.77 E-value=2.6e+02 Score=28.51 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=56.3
Q ss_pred HHHHHHhccCChhHHhHhHHHHHHhhcC-CCchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q psy6263 679 RIFGQLGRYGEPTVRRAVPLAIALCSMS-NPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLA 755 (913)
Q Consensus 679 r~~~~Ll~~~~~~vR~~a~LALgL~~as-~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~ 755 (913)
..+...+++.++.+||++..++.-.... ..-..+++.+.+..+|.+.+|+.++--+|.-++.- +-.++..+++...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~l~~~~ 184 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAFLEKNG 184 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence 5788889999999999887777554443 34558889999999999999999987777777754 3345555655543
No 88
>KOG1062|consensus
Probab=53.48 E-value=5.8e+02 Score=32.45 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=78.1
Q ss_pred cccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCch--hHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHH
Q psy6263 674 SEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL--NVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATML 751 (913)
Q Consensus 674 ~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~--~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~L 751 (913)
.+.+..++++.+-..+-++||.+-=+|.-+--..|+. +---+......|+|...++-| |=|..+=+|...|..|-
T Consensus 311 rvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrra---lELs~~lvn~~Nv~~mv 387 (866)
T KOG1062|consen 311 RVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRA---LELSYALVNESNVRVMV 387 (866)
T ss_pred HHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHH---HHHHHHHhccccHHHHH
Confidence 3457778888888889999998777776666666543 222233333347999887775 22333333433455567
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhhcCCCc-----ee----cccccCCCCCCChHHHHHHHHHH
Q psy6263 752 RQLAQYHVKNTGHLFMVRIAQGLTHMGKGT-----VS----LSPFHTDRQILNPVALAGLLVVL 806 (913)
Q Consensus 752 r~L~~~~~~d~~~~f~~~iAqGLl~~Gkg~-----~t----Lsp~~sd~~~~~~~alagLl~~l 806 (913)
+.|..|-++- ...|-+-+|.|++++--.- |- +.-|..-+.++++..+-.++.++
T Consensus 388 ~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LI 450 (866)
T KOG1062|consen 388 KELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLI 450 (866)
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 7777665433 4557889999998774322 21 22233444566666666665554
No 89
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=51.95 E-value=2.6e+02 Score=27.91 Aligned_cols=89 Identities=13% Similarity=0.051 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHHHH
Q psy6263 502 VAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMC 581 (913)
Q Consensus 502 laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lgl 581 (913)
..+|.++.-.++.+.....++...+..+ . .......+|..+...|+-+.+...++.....++..........+|.
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~~----~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLNP----N-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL 143 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC----C-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 3455555555555444444443333110 0 1111222233333344444444444443332211112222344566
Q ss_pred HHhccCCHHHHHHH
Q psy6263 582 AYAGSGDVLVVQEF 595 (913)
Q Consensus 582 AyaGTGn~~~Iq~L 595 (913)
+|...|+.....+.
T Consensus 144 ~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 144 CALKAGDFDKAEKY 157 (234)
T ss_pred HHHHcCCHHHHHHH
Confidence 66666665444333
No 90
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=51.30 E-value=3.1e+02 Score=28.67 Aligned_cols=121 Identities=12% Similarity=0.078 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhcCcccccccHHHHHHHHhc---cCChhHHhHhHHHHHHhhcCCC-chhH-HHHHHhhccCccHHHHH
Q psy6263 655 MQAVAALGVAVVALGEEIGSEMSTRIFGQLGR---YGEPTVRRAVPLAIALCSMSNP-ALNV-IDVLNKYSHDLDEEVAH 729 (913)
Q Consensus 655 ~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~---~~~~~vR~~a~LALgL~~as~~-~~~v-id~L~~~s~D~d~~Vr~ 729 (913)
+.|...++......|.++.+ .+..++..|++ ..+..||..+--||--++-..+ ...+ +..+.....+.++.||.
T Consensus 71 ~~A~~~l~~l~~~l~~~~~~-~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~ 149 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSHFEP-YADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVRE 149 (228)
T ss_dssp HHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHHHHhHhHHH-HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHH
Confidence 34445555555566666532 34555555543 4567789988888888876666 4566 88888888899999999
Q ss_pred HHHHHHHHhhCCCC-h-h-----H-HHHHHHHHHHH-hcCChhHHHHHHHHHHHhh
Q psy6263 730 NAIFSMGLVGAGTN-N-A-----R-LATMLRQLAQY-HVKNTGHLFMVRIAQGLTH 776 (913)
Q Consensus 730 ~AiiALGlV~aGtn-n-~-----r-i~~~Lr~L~~~-~~~d~~~~f~~~iAqGLl~ 776 (913)
.+.-.+..+.-..+ + + . +.++...+.+. ...||.+|-.++-+...++
T Consensus 150 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 150 ECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 98887877776555 1 1 1 23344444443 3577888888887777664
No 91
>KOG0414|consensus
Probab=50.13 E-value=49 Score=42.96 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCch--hHHHHHHhhccCccHHHHHHH
Q psy6263 654 SMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL--NVIDVLNKYSHDLDEEVAHNA 731 (913)
Q Consensus 654 ~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~--~vid~L~~~s~D~d~~Vr~~A 731 (913)
.++|..+||=.++= .-++..+..+-.|.-|-...+|.||..+.+|+|=+...-|+. ..-+.|.+-.||.+..||.+|
T Consensus 940 q~AAtLaL~klM~i-Sa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRkta 1018 (1251)
T KOG0414|consen 940 QAAATLALGKLMCI-SAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRKTA 1018 (1251)
T ss_pred HHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHHHHHH
Confidence 45555555533321 223323334444555556899999999999988776665654 667778888899999999999
Q ss_pred HHHHHHhhC
Q psy6263 732 IFSMGLVGA 740 (913)
Q Consensus 732 iiALGlV~a 740 (913)
++-|..+..
T Consensus 1019 ~lvlshLIL 1027 (1251)
T KOG0414|consen 1019 LLVLSHLIL 1027 (1251)
T ss_pred HHHHHHHHH
Confidence 998876654
No 92
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=49.46 E-value=7.9e+02 Score=32.85 Aligned_cols=192 Identities=14% Similarity=0.087 Sum_probs=95.1
Q ss_pred HHHHhhhhh--cccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCC-------HHHHHH
Q psy6263 392 AAASLGLIY--LWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDS-------ITLRIG 462 (913)
Q Consensus 392 A~aslGlI~--~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~-------~~v~~g 462 (913)
+...+|.++ .|+.++|.+.+.+-+.....+ ..++.+++.++... ..+.++.++........ ......
T Consensus 387 a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~--~~a~~~L~~l~~~~--~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 387 AVLGLGDVAMARKDYAAAERYYQQALRMDPGN--TNAVRGLANLYRQQ--SPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhc--CHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 333455444 567777777666555322121 24566777776432 22456666554322210 112223
Q ss_pred HHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhH
Q psy6263 463 AVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRF 540 (913)
Q Consensus 463 A~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~ 540 (913)
+...+|-++...++ +++.+.+...+. ++. +. .+-+.+|.++.-.++.+.....++.+....+ .+ .-.+
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~----~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P---~~-~~~~- 532 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPG-SV----WLTYRLAQDLRQAGQRSQADALMRRLAQQKP---ND-PEQV- 532 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC-HHHH-
Confidence 44456666666665 466666666664 332 12 3457788888888887777777666654221 11 2222
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHhcC-C-Chhhh------hHHHHHHHHHHhccCCHHHHHHHHh
Q psy6263 541 LPLALAITYLGKKDAIDTTLAALEVL-P-DPFRS------MAKMMLKMCAYAGSGDVLVVQEFLH 597 (913)
Q Consensus 541 ~~lgLgLl~~G~~e~~~~ll~~L~~~-~-~pi~r------~~~~~~lglAyaGTGn~~~Iq~LLh 597 (913)
.++++-+...|+.+++...++.+... . +.+.. ....+..+-+|...|+.....+++.
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22233222334444444444443211 0 11111 1123445566777787766656554
No 93
>KOG1125|consensus
Probab=49.39 E-value=2.7e+02 Score=33.90 Aligned_cols=168 Identities=21% Similarity=0.264 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHhhcCC-C-----C
Q psy6263 420 DYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLTDR-K-----S 492 (913)
Q Consensus 420 ~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~d~-~-----~ 492 (913)
+..++=|-.=||++++-.-+|. -++.-|...++-..... -|+|+|++.|...+.+ +++..|...+... . .
T Consensus 315 dP~haeAW~~LG~~qaENE~E~-~ai~AL~rcl~LdP~Nl--eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~ 391 (579)
T KOG1125|consen 315 DPQHAEAWQKLGITQAENENEQ-NAISALRRCLELDPTNL--EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVS 391 (579)
T ss_pred ChHHHHHHHHhhhHhhhccchH-HHHHHHHHHHhcCCccH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccc
Confidence 3455566667899988655553 45566677665433333 4788899999888875 7788887776421 1 0
Q ss_pred c-HHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcc---cHHHHHHHHhcCC
Q psy6263 493 T-PEVVAFAAVAASLIYVGTG-YHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKD---AIDTTLAALEVLP 567 (913)
Q Consensus 493 ~-~ev~~~A~laLGLi~lGs~-n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e---~~~~ll~~L~~~~ 567 (913)
. .+.. . ..+-=++++. ..++.+..|+.....+. ++-.=+-.|||.+|+=.+| .++-.-..|...|
T Consensus 392 a~~~~~--~--~~~~s~~~~~~l~~i~~~fLeaa~~~~~------~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P 461 (579)
T KOG1125|consen 392 AGENED--F--ENTKSFLDSSHLAHIQELFLEAARQLPT------KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP 461 (579)
T ss_pred cCcccc--c--cCCcCCCCHHHHHHHHHHHHHHHHhCCC------CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC
Confidence 0 0000 0 0000011111 12455556666655321 2233345689999988875 3444444555555
Q ss_pred Ch---hhhhHHHHH----------------------------HHHHHhccCCH-HHHHHHHhhhh
Q psy6263 568 DP---FRSMAKMML----------------------------KMCAYAGSGDV-LVVQEFLHVCS 600 (913)
Q Consensus 568 ~p---i~r~~~~~~----------------------------lglAyaGTGn~-~~Iq~LLh~~~ 600 (913)
+. .-|+|+++| +|++|+--|.- +++..||..+.
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 54 347777766 77888877864 88888888775
No 94
>KOG1058|consensus
Probab=47.66 E-value=2.1e+02 Score=35.91 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=50.6
Q ss_pred cccccCchhhHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC--HHHHHHHHHh
Q psy6263 412 DKYLYTSEDYIKAGALLALGIVNCGVRNEC---DPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR--QEVVTLLLPV 486 (913)
Q Consensus 412 ~~yL~s~~~~~k~GAllaLGLi~aG~~~e~---d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~--e~v~e~L~~~ 486 (913)
++-|.++++|+||..+--+-- .+|. +|.+..+...|+..+.++|.-|+++++-+|-...+ .|+-+++-..
T Consensus 105 RkDLQHPNEyiRG~TLRFLck-----LkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~f 179 (948)
T KOG1058|consen 105 RKDLQHPNEYIRGSTLRFLCK-----LKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESF 179 (948)
T ss_pred hhhccCchHhhcchhhhhhhh-----cCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHH
Confidence 445677889999887765532 2442 34445555667788899999999999999988554 3666666666
Q ss_pred hc
Q psy6263 487 LT 488 (913)
Q Consensus 487 L~ 488 (913)
|.
T Consensus 180 L~ 181 (948)
T KOG1058|consen 180 LL 181 (948)
T ss_pred HH
Confidence 64
No 95
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=45.66 E-value=8.9e+02 Score=32.37 Aligned_cols=51 Identities=10% Similarity=0.064 Sum_probs=30.4
Q ss_pred cccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcC
Q psy6263 401 LWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLN 454 (913)
Q Consensus 401 ~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~ 454 (913)
.++.++++..+++.+....... .+.+++|.++.... +.+.+++.|...+..
T Consensus 160 ~g~~~~A~~~L~~ll~~~P~~~--~~~~~LA~ll~~~g-~~~eAl~~l~~~~~~ 210 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADYPGNT--GLRNTLALLLFSSG-RRDEGFAVLEQMAKS 210 (1157)
T ss_pred CccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHccC-CHHHHHHHHHHHhhC
Confidence 4677778888877765432222 35566666664332 235677777776554
No 96
>KOG0915|consensus
Probab=45.05 E-value=1e+03 Score=32.76 Aligned_cols=69 Identities=26% Similarity=0.191 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHhh------cCC-CCcHHHHH-HHHHHHHHHHhcCCC-------HHHHHHHHHH
Q psy6263 459 LRIGAVLGLGLAYAGTKRQEVVTLLLPVL------TDR-KSTPEVVA-FAAVAASLIYVGTGY-------HEVASAILQT 523 (913)
Q Consensus 459 v~~gA~LGLGlay~Gs~~e~v~e~L~~~L------~d~-~~~~ev~~-~A~laLGLi~lGs~n-------~~v~~~lL~~ 523 (913)
+|.++||+|.=.--|--.+++.+.+..+. +|+ ..+.+.++ .++=+|+-+.+-.|+ .++.+.+|..
T Consensus 1055 VReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPf 1134 (1702)
T KOG0915|consen 1055 VREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPF 1134 (1702)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHH
Confidence 77888888888777866666655554332 232 11222222 455566655554442 4667777887
Q ss_pred HHcC
Q psy6263 524 LIEL 527 (913)
Q Consensus 524 l~~~ 527 (913)
+.+.
T Consensus 1135 Ll~~ 1138 (1702)
T KOG0915|consen 1135 LLDE 1138 (1702)
T ss_pred Hhcc
Confidence 7764
No 97
>KOG0213|consensus
Probab=45.04 E-value=7.6e+02 Score=31.36 Aligned_cols=182 Identities=16% Similarity=0.133 Sum_probs=104.9
Q ss_pred ccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHH------HHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHh
Q psy6263 413 KYLYTSEDYIKAGALLALGIVNCGVRNECDPALAL------LSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPV 486 (913)
Q Consensus 413 ~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~l------L~~~L~~~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~ 486 (913)
+-|.+.++-+....+--+|.|...- .|--++-+. |.+.|.+.+..+|..|.-.+|.+.-.-+-.||+..|+.-
T Consensus 890 PILknrheKVqen~IdLvg~Iadrg-pE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnn 968 (1172)
T KOG0213|consen 890 PILKNRHEKVQENCIDLVGTIADRG-PEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNN 968 (1172)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhcC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhc
Confidence 3344567778888888888886421 222122222 344556666789999999999998888888999999988
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcc-------cHHHH
Q psy6263 487 LTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKD-------AIDTT 559 (913)
Q Consensus 487 L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e-------~~~~l 559 (913)
|.-..-..++ ...+|++.|-=-.+--.+ |..++..-. +.+-.+.-+.-=++.++|--.++ .+-.+
T Consensus 969 LkvqeRq~Rv--cTtvaIaIVaE~c~pFtV----LPalmneYr--tPe~nVQnGVLkalsf~FeyigemskdYiyav~Pl 1040 (1172)
T KOG0213|consen 969 LKVQERQNRV--CTTVAIAIVAETCGPFTV----LPALMNEYR--TPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPL 1040 (1172)
T ss_pred chHHHHHhch--hhhhhhhhhhhhcCchhh----hHHHHhhcc--CchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHH
Confidence 7521111123 344555543221122233 444443111 11112333443355555533333 23334
Q ss_pred HHHHhcCCChhhhhHHHHH---HHHHHhccCCHHHHHHHHhhhhccC
Q psy6263 560 LAALEVLPDPFRSMAKMML---KMCAYAGSGDVLVVQEFLHVCSEHY 603 (913)
Q Consensus 560 l~~L~~~~~pi~r~~~~~~---lglAyaGTGn~~~Iq~LLh~~~~~~ 603 (913)
++--..+.|++-|..++-+ +++...|||..++.-.||.+.-..+
T Consensus 1041 leDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNI 1087 (1172)
T KOG0213|consen 1041 LEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNI 1087 (1172)
T ss_pred HHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhh
Confidence 4444456788777766644 3456789999999989988876544
No 98
>KOG4224|consensus
Probab=43.44 E-value=5.9e+02 Score=29.61 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHH--------HHHHHHHhhcCC
Q psy6263 420 DYIKAGALLALGIVNCGVRNEC-DPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQE--------VVTLLLPVLTDR 490 (913)
Q Consensus 420 ~~~k~GAllaLGLi~aG~~~e~-d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e~--------v~e~L~~~L~d~ 490 (913)
.+--.||++.+--+.-+.+-=+ -..+..|-..+++.+.-+|.-++-++|.+.+.-.+.. +...|.+.+.+.
T Consensus 184 qrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~ 263 (550)
T KOG4224|consen 184 QRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG 263 (550)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC
Confidence 4445577776643321110000 0123456777788888999999999999887765543 233344433333
Q ss_pred CCcHHHHHHHHHHHHHHHh
Q psy6263 491 KSTPEVVAFAAVAASLIYV 509 (913)
Q Consensus 491 ~~~~ev~~~A~laLGLi~l 509 (913)
+ ..+.+-|++|||-+-.
T Consensus 264 s--~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 264 S--DKVKCQAGLALRNLAS 280 (550)
T ss_pred C--hHHHHHHHHHHhhhcc
Confidence 2 3466789999996543
No 99
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=42.64 E-value=1.1e+02 Score=28.07 Aligned_cols=62 Identities=24% Similarity=0.381 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCChhccHHHHHH--HHHHHHhhccccccCCCchhhhhhhHHHHHHHHhhcCCChhH
Q psy6263 23 PDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALES--MRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQKPK 100 (913)
Q Consensus 23 ~~~lse~d~~~k~~l~~lv~~L~e~d~~l~~~AL~~--L~~~i~~~t~s~tsvpkplk~l~~~~~~l~~~ye~~~~~~~r 100 (913)
+.-+-+|-.+|++|++.|=+.+ |.+|.+.++|+|. |+..++ .+..+|+.- .|
T Consensus 19 ~~~~~~e~~~L~eEI~~Lr~qv-e~nPevtr~A~EN~rL~ee~r---------------------rl~~f~~~g----er 72 (86)
T PF12711_consen 19 ESYLEEENEALKEEIQLLREQV-EHNPEVTRFAMENIRLREELR---------------------RLQSFYVEG----ER 72 (86)
T ss_pred cchhHHHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHH---------------------HHHHHHHhh----HH
Confidence 3445556689999999988877 6789999999997 444444 455666321 47
Q ss_pred HHHHHHHHHh
Q psy6263 101 KLLCSIISVL 110 (913)
Q Consensus 101 ~l~a~i~S~l 110 (913)
+.++-.+|.|
T Consensus 73 E~l~~eis~L 82 (86)
T PF12711_consen 73 EMLLQEISEL 82 (86)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 100
>KOG1943|consensus
Probab=42.25 E-value=9.5e+02 Score=31.69 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhcCcccccccHHHHHHHHhc----cCChhHHhHhHHHHHHhhcCCCch---hHHHHHHhhccCccHHH
Q psy6263 655 MQAVAALGVAVVALGEEIGSEMSTRIFGQLGR----YGEPTVRRAVPLAIALCSMSNPAL---NVIDVLNKYSHDLDEEV 727 (913)
Q Consensus 655 ~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~----~~~~~vR~~a~LALgL~~as~~~~---~vid~L~~~s~D~d~~V 727 (913)
..++..+....-.. +.-.-++|+||.. ..++.+|--++.||.=++--+|.. .++-.|.+..--.+...
T Consensus 524 sNcy~~l~~~ia~~-----~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~ 598 (1133)
T KOG1943|consen 524 SNCYLDLCVSIAEF-----SGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASM 598 (1133)
T ss_pred hhHHHHHhHHHHhh-----hhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHH
Confidence 33455555443332 3345677888865 478889999999988876655543 23333333333467777
Q ss_pred HHHHHHHHHHhhC
Q psy6263 728 AHNAIFSMGLVGA 740 (913)
Q Consensus 728 r~~AiiALGlV~a 740 (913)
|.++.+|+|=|-.
T Consensus 599 r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 599 RHGVFLAAGEVIG 611 (1133)
T ss_pred hhhhHHHHHHHHH
Confidence 8999999887653
No 101
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=42.24 E-value=63 Score=28.59 Aligned_cols=41 Identities=12% Similarity=0.281 Sum_probs=29.4
Q ss_pred chhHHHHHHhhc-cCccHHHHHHHHHHHHHhhCCCChhHHHHHHH
Q psy6263 709 ALNVIDVLNKYS-HDLDEEVAHNAIFSMGLVGAGTNNARLATMLR 752 (913)
Q Consensus 709 ~~~vid~L~~~s-~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr 752 (913)
+.++++.+-+++ +.+...||-.++++|||+.- +.+-+++|+
T Consensus 26 ~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~---T~~G~~~L~ 67 (73)
T PF14668_consen 26 ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS---TEEGAEILD 67 (73)
T ss_pred hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC---CHHHHHHHH
Confidence 347888888886 47778899999999999973 233444444
No 102
>KOG2025|consensus
Probab=42.22 E-value=2.1e+02 Score=35.69 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=36.4
Q ss_pred ccCChhHHhHhHHHHHHhh--cCCCchhHHHHHHhhc-cCccHHHHHHHHH
Q psy6263 686 RYGEPTVRRAVPLAIALCS--MSNPALNVIDVLNKYS-HDLDEEVAHNAIF 733 (913)
Q Consensus 686 ~~~~~~vR~~a~LALgL~~--as~~~~~vid~L~~~s-~D~d~~Vr~~Aii 733 (913)
.+-+|.||+-|.+||.=.- .+++.-.+.++|.-+. +|++++||++|..
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred hccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 3678999999988887665 3445557887777775 6999999988744
No 103
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=39.26 E-value=2e+02 Score=34.10 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=67.4
Q ss_pred HHHHHHHHhccCCHHHHH----------HHHHhhCchhhHHHHHhccChHHHHHHHHhhcccCCChhhHHHHHHHHHHHh
Q psy6263 166 IEDIIQFDMKHNAEIQAC----------DLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYL 235 (913)
Q Consensus 166 v~~iv~~~l~~n~e~eAi----------dlalE~~~ld~i~~~v~~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~iy~ 235 (913)
-.++..|.-++|-...|+ +|||+++++|.=.++..+.+.+..-.-|-..+- +.-=++++-+.|.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL------~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEAL------RQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHH------HTTBHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHH------HcCCHHHHHHHHH
Confidence 467777777888888887 678999998887777766554333222221110 0001344556777
Q ss_pred ccCCHHHHHHHHHhcCCchhHHHHHhcc---CChhHHHHHHHHHhh
Q psy6263 236 KFKEYPRALTLALQLNDEPSVLKIFQLC---EDPVVRKQLAYMAGR 278 (913)
Q Consensus 236 ~~~~~~~al~~al~L~d~~~v~~i~~~~---~d~~~~~Qiaf~lar 278 (913)
+.++|...+-.+.-.+|.+.++++.+.+ .+...+.|.+|.+.+
T Consensus 372 k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd 417 (443)
T PF04053_consen 372 KAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGD 417 (443)
T ss_dssp HCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-
T ss_pred hhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCC
Confidence 7888888888888888888888888775 355677777777765
No 104
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=38.64 E-value=51 Score=38.72 Aligned_cols=90 Identities=23% Similarity=0.460 Sum_probs=48.4
Q ss_pred HHHHHHhhCchhhHHHHHhccChHH---HHHHHHhhcccCCChhhHHHHHHHHHHHhccCCHHHHHHHH---HhcCCc--
Q psy6263 182 ACDLLMEIDHLELLDKHMDVTNYPR---VCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLA---LQLNDE-- 253 (913)
Q Consensus 182 AidlalE~~~ld~i~~~v~~~~~~r---i~~Yl~~~~~~~~~~~~~~vl~~~~~iy~~~~~~~~al~~a---l~L~d~-- 253 (913)
.+++-||..|.++-..-++ +-.| +..|...|. +..+-+.-.|+.+..++.|.+.|..|...| |.++-.
T Consensus 259 ilgl~iEl~Rr~l~~~~~~--~~kR~lELAAYFThc~--LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 259 ILGLSIELERRELPKDPVE--DQKRNLELAAYFTHCK--LQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHHCTS-TTTHH--HHHHHHHHHHHHCCS-----HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHHHhccccchh--hHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 5567777777554332221 1124 334777764 334557779999999999999998776544 444422
Q ss_pred --hhHHHHHhccC-ChhHHHHHHHH
Q psy6263 254 --PSVLKIFQLCE-DPVVRKQLAYM 275 (913)
Q Consensus 254 --~~v~~i~~~~~-d~~~~~Qiaf~ 275 (913)
+..++|+..|+ ++.-+.||-||
T Consensus 335 ~a~qArKil~~~e~~~tDa~~i~yD 359 (422)
T PF06957_consen 335 VAEQARKILQACERNPTDAHEIDYD 359 (422)
T ss_dssp HHHHHHHHHHHHCCS--BSS--S--
T ss_pred HHHHHHHHHHHHhcCCCCceecCCC
Confidence 24556666653 34445666565
No 105
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.53 E-value=3.8e+02 Score=26.00 Aligned_cols=93 Identities=24% Similarity=0.199 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHH
Q psy6263 496 VVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAK 575 (913)
Q Consensus 496 v~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~ 575 (913)
....|.|.++-+++..++.+-....++.+.+.. .+..+...+.+.+|.+++..++ .+.-+..|....++..+.-.
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----~d~~l~~~a~l~LA~~~~~~~~-~d~Al~~L~~~~~~~~~~~~ 120 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANA----PDPELKPLARLRLARILLQQGQ-YDEALATLQQIPDEAFKALA 120 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHhccCcchHHHH
Confidence 345778888888888888777777777776632 1214445556667666654443 22233333334444444455
Q ss_pred HHHHHHHHhccCCHHHHH
Q psy6263 576 MMLKMCAYAGSGDVLVVQ 593 (913)
Q Consensus 576 ~~~lglAyaGTGn~~~Iq 593 (913)
....|-+|..-|+...-+
T Consensus 121 ~~~~Gdi~~~~g~~~~A~ 138 (145)
T PF09976_consen 121 AELLGDIYLAQGDYDEAR 138 (145)
T ss_pred HHHHHHHHHHCCCHHHHH
Confidence 667888888888764433
No 106
>KOG0985|consensus
Probab=38.52 E-value=2.3e+02 Score=36.77 Aligned_cols=69 Identities=19% Similarity=0.329 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcccC-CC----hhhHHHHHHHHHHHhccCCHHHHHHHHHh-cCCchhHHHHHhccCChhHHHHHH
Q psy6263 205 PRVCLYLSNCALYV-EE----PERSVITNGVLNNYLKFKEYPRALTLALQ-LNDEPSVLKIFQLCEDPVVRKQLA 273 (913)
Q Consensus 205 ~ri~~Yl~~~~~~~-~~----~~~~~vl~~~~~iy~~~~~~~~al~~al~-L~d~~~v~~i~~~~~d~~~~~Qia 273 (913)
.|+..|+-..-+|- ++ .-..++.+-++.||.|++-+.+|+++++. +++.+...+.-++|+.|.+=-|+|
T Consensus 1037 trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqla 1111 (1666)
T KOG0985|consen 1037 TRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLA 1111 (1666)
T ss_pred HHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHH
Confidence 56777887776662 22 12467999999999999999999999986 788888888888898888877765
No 107
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=38.06 E-value=1.1e+02 Score=31.73 Aligned_cols=76 Identities=11% Similarity=0.175 Sum_probs=52.9
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQ 753 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~ 753 (913)
....+...+++.++.+||++..++.-......-..+++.+....+|.+.+|+.++--+|-=++.. +-..+.++|++
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~~~l~~ 196 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Confidence 46678889999999999988766533333344458888888889999999998876666666653 22345555554
No 108
>KOG1060|consensus
Probab=37.95 E-value=9.8e+02 Score=30.61 Aligned_cols=88 Identities=23% Similarity=0.209 Sum_probs=45.3
Q ss_pred cccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH--HHHHHHHHhhcCCC
Q psy6263 414 YLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ--EVVTLLLPVLTDRK 491 (913)
Q Consensus 414 yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e--~v~e~L~~~L~d~~ 491 (913)
-|+.+++-+|+.|+-.+.-|-.-.-. .=++..+.+...+.++.+|--|+.+|--.|-=-.++ ++.+.+...|.|.+
T Consensus 116 ~L~DpN~LiRasALRvlSsIRvp~Ia--PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~s 193 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSSIRVPMIA--PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRS 193 (968)
T ss_pred hhcCCcHHHHHHHHHHHHhcchhhHH--HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCC
Confidence 34556777888877777655321111 112223445566677777777777776666332222 33344444444543
Q ss_pred CcHHHHHHHHHHHH
Q psy6263 492 STPEVVAFAAVAAS 505 (913)
Q Consensus 492 ~~~ev~~~A~laLG 505 (913)
. . |.++|.+|.-
T Consensus 194 p-l-VvgsAv~AF~ 205 (968)
T KOG1060|consen 194 P-L-VVGSAVMAFE 205 (968)
T ss_pred C-c-chhHHHHHHH
Confidence 2 1 4455555533
No 109
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.15 E-value=2e+02 Score=34.88 Aligned_cols=93 Identities=16% Similarity=0.305 Sum_probs=53.4
Q ss_pred HHHHHhccCCHHHHHHHHHhhCc----------hhhHHHHHhc-c-ChHHHHHHHHhh-cccC-C-Ch--------hhHH
Q psy6263 169 IIQFDMKHNAEIQACDLLMEIDH----------LELLDKHMDV-T-NYPRVCLYLSNC-ALYV-E-EP--------ERSV 225 (913)
Q Consensus 169 iv~~~l~~n~e~eAidlalE~~~----------ld~i~~~v~~-~-~~~ri~~Yl~~~-~~~~-~-~~--------~~~~ 225 (913)
++..|+++++..+|+.++...+= +..|-.++=. . +..|- .++.++ ..|. + .| ++..
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere-~~le~algsF~ap~rpl~~~~~~ey~d~ 492 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPERE-AQLEAALGSFYAPTRPLSDATVLEYRDP 492 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHH-HHHHHHHhhccCCCcCccHHHHHHHHHH
Confidence 44478899999999999988652 2223333222 1 22222 222221 2221 1 11 3444
Q ss_pred HHHHHHHHHh---ccCCHHHHHHHHHhcCCchhHHHHHhc
Q psy6263 226 ITNGVLNNYL---KFKEYPRALTLALQLNDEPSVLKIFQL 262 (913)
Q Consensus 226 vl~~~~~iy~---~~~~~~~al~~al~L~d~~~v~~i~~~ 262 (913)
|-+.+.+.|- +.+.|-.|+..|++++|+|.--||...
T Consensus 493 V~~~aRRfFhhLLR~~rfekAFlLAvdi~~~DLFmdlh~~ 532 (545)
T PF11768_consen 493 VSDLARRFFHHLLRYQRFEKAFLLAVDIGDRDLFMDLHYL 532 (545)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhccchHHHHHHHHH
Confidence 5444444433 456888899999999999888888764
No 110
>KOG2023|consensus
Probab=34.91 E-value=7.4e+02 Score=31.04 Aligned_cols=148 Identities=15% Similarity=0.124 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChhccHHHHHHHHHHHHhhccccccCCCchhhhhhhHHHHH----HHHhhcCCChhHHHHH
Q psy6263 29 EDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALK----EACEKMTDQKPKKLLC 104 (913)
Q Consensus 29 ~d~~~k~~l~~lv~~L~e~d~~l~~~AL~~L~~~i~~~t~s~tsvpkplk~l~~~~~~l~----~~ye~~~~~~~r~l~a 104 (913)
-|+.+|-=|+.++.|+-+.+..+++.|-...-++...+-+ +|.||++.|- ..|.+.... +-..+-
T Consensus 470 ~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~----------eLVp~l~~IL~~l~~af~kYQ~K-NLlILY 538 (885)
T KOG2023|consen 470 RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE----------ELVPYLEYILDQLVFAFGKYQKK-NLLILY 538 (885)
T ss_pred hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc----------hhHHHHHHHHHHHHHHHHHHhhc-ceehHH
Confidence 5788999999999999999999999999999999998875 5556655543 334433221 112222
Q ss_pred HHHHHheeccCcCchhhhhhhhhcCCCCCCCCcChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHhccCCHHHHHH
Q psy6263 105 SIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATNKYEKPQLLELIEDIIQFDMKHNAEIQACD 184 (913)
Q Consensus 105 ~i~S~l~~~~~~~~~~~L~y~L~~~~~~~~~wg~eYvr~l~~~i~~~y~~~~~~~~~L~~lv~~iv~~~l~~n~e~eAid 184 (913)
|- .| -.-++.-.+|. ..+|++-|.--.++.|......+++|-.+.+-+- +|-
T Consensus 539 DA-------Ig-tlAdsvg~~Ln---------~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClS-----------sia 590 (885)
T KOG2023|consen 539 DA-------IG-TLADSVGHALN---------KPAYIQILMPPLIEKWELLSDSDKDLFPLLECLS-----------SIA 590 (885)
T ss_pred HH-------HH-HHHHHHHHhcC---------cHHHHHHhccHHHHHHHhcCcccchHHHHHHHHH-----------HHH
Confidence 22 22 22244433333 5789999999999999999888999999987553 455
Q ss_pred HHHhhCchhhHHHHHhccC-hHHHHHHHHhhc
Q psy6263 185 LLMEIDHLELLDKHMDVTN-YPRVCLYLSNCA 215 (913)
Q Consensus 185 lalE~~~ld~i~~~v~~~~-~~ri~~Yl~~~~ 215 (913)
-||+.+=+........++- --+-|++...++
T Consensus 591 ~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~ 622 (885)
T KOG2023|consen 591 SALGVGFLPYAQPVYQRCFRILQKTLQLLAKV 622 (885)
T ss_pred HHHhccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 6677776665555554321 112234555553
No 111
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=34.10 E-value=1.4e+02 Score=37.06 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=49.1
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhc--CCCchhHHHHHHhhccCccHHHHHHHHHHHHH-hhCCC
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSM--SNPALNVIDVLNKYSHDLDEEVAHNAIFSMGL-VGAGT 742 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~a--s~~~~~vid~L~~~s~D~d~~Vr~~AiiALGl-V~aGt 742 (913)
+-.+.-+-...+|.||..+.++||=... -+-....-+.|.+-.+|-+.+||+++.+.+.+ ++||+
T Consensus 936 pllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq 1003 (1128)
T COG5098 936 PLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ 1003 (1128)
T ss_pred HHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc
Confidence 3334444458899999999999985443 34456788888888999999999999888875 55654
No 112
>KOG1061|consensus
Probab=34.04 E-value=79 Score=39.36 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=75.1
Q ss_pred HHHHHHhccCChhHHhHhHHHHHHhhcCCCc----hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCCh-------hH-
Q psy6263 679 RIFGQLGRYGEPTVRRAVPLAIALCSMSNPA----LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNN-------AR- 746 (913)
Q Consensus 679 r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~----~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn-------~r- 746 (913)
+-+...+++.+|++|+.++++++-.+--++. ...++.|..+..|+++.|-.||.=|+.-+...++| ++
T Consensus 124 ~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~ 203 (734)
T KOG1061|consen 124 DPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQL 203 (734)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHH
Confidence 3355667899999999999999999876654 48899999998899999999999999999988763 11
Q ss_pred H---------------HHHHHHHHHHhcCChh--HHHHHHHHHHHhhcCCCce
Q psy6263 747 L---------------ATMLRQLAQYHVKNTG--HLFMVRIAQGLTHMGKGTV 782 (913)
Q Consensus 747 i---------------~~~Lr~L~~~~~~d~~--~~f~~~iAqGLl~~Gkg~~ 782 (913)
+ +.+|..|+.|.-+|+. ..+.-|+..=|-|+-.+-+
T Consensus 204 ~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avv 256 (734)
T KOG1061|consen 204 INKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVV 256 (734)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceE
Confidence 1 2355556655544431 2456666666666654443
No 113
>KOG4224|consensus
Probab=33.75 E-value=65 Score=36.90 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=55.3
Q ss_pred HHHHHHhccCChhHHhHhHHHHHHhhcCC--------CchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCC
Q psy6263 679 RIFGQLGRYGEPTVRRAVPLAIALCSMSN--------PALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTN 743 (913)
Q Consensus 679 r~~~~Ll~~~~~~vR~~a~LALgL~~as~--------~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtn 743 (913)
..+=.++..+|+.+||-++-|++.+..-. .-++++..|-.++.|+++-|.--|-+||+.+.+.|.
T Consensus 211 pvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~ 283 (550)
T KOG4224|consen 211 PVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE 283 (550)
T ss_pred hhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch
Confidence 34556788999999999999999998753 234688888889999999999999999999999886
No 114
>KOG4653|consensus
Probab=33.49 E-value=5e+02 Score=33.25 Aligned_cols=165 Identities=18% Similarity=0.128 Sum_probs=94.2
Q ss_pred ccCchhhHHHHHHHHHHHHhcCCCCC----chhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHH-hhcC
Q psy6263 415 LYTSEDYIKAGALLALGIVNCGVRNE----CDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLP-VLTD 489 (913)
Q Consensus 415 L~s~~~~~k~GAllaLGLi~aG~~~e----~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~-~L~d 489 (913)
++.+...+|++|+.-+-=..-..... -..+++...++|++.++.+-..|+=|+-.. +--.++++++.|.. +.+.
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~L-cevy~e~il~dL~e~Y~s~ 814 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSL-CEVYPEDILPDLSEEYLSE 814 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHH-HHhcchhhHHHHHHHHHhc
Confidence 34567789999998765443221110 134677778888888876555555554332 23367888888887 4432
Q ss_pred CC-C--c-----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHH-HHHHhc-----CCc--
Q psy6263 490 RK-S--T-----PEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLA-LAITYL-----GKK-- 553 (913)
Q Consensus 490 ~~-~--~-----~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lg-LgLl~~-----G~~-- 553 (913)
.+ . . +|+..=-+.++|=++.+-- +.++++.+.... +. + ..-|..++| +|.++- ++.
T Consensus 815 k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-----~~Li~tfl~gvr-ep-d-~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 815 KKKLQTDYRLKVGEAILKVAQALGELVFKYK-----AVLINTFLSGVR-EP-D-HEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred ccCCCccceehHHHHHHHHHHHhccHHHHHH-----HHHHHHHHHhcC-Cc-h-HHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 22 1 1 2322223445555544422 345555554211 11 1 334555554 344431 111
Q ss_pred -ccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCC
Q psy6263 554 -DAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGD 588 (913)
Q Consensus 554 -e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn 588 (913)
|....++.....+..+..|++|+.++.-..-|||.
T Consensus 887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~ 922 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE 922 (982)
T ss_pred HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence 34455566666788889999999999999999993
No 115
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=32.97 E-value=5e+02 Score=25.75 Aligned_cols=184 Identities=16% Similarity=0.094 Sum_probs=96.1
Q ss_pred hcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-HH
Q psy6263 400 YLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-QE 478 (913)
Q Consensus 400 ~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e~ 478 (913)
..|+.+++...+.+-+...... ..+...+|.++.... +.+.+...+...+....... .+...+|.++...++ ++
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDD--YLAYLALALYYQQLG-ELEKAEDSFRRALTLNPNNG--DVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcccHHH
Confidence 3567777776666554322222 245555666665332 33567777777665322211 244556666666555 34
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhc--CCcccH
Q psy6263 479 VVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYL--GKKDAI 556 (913)
Q Consensus 479 v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~--G~~e~~ 556 (913)
..+.+...+........ ..+...+|.++.-.++.+-....+..+....+ . ... ....+|.+++ |+-+.+
T Consensus 118 A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~--~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 118 AMQQFEQAIEDPLYPQP--ARSLENAGLCALKAGDFDKAEKYLTRALQIDP----Q-RPE--SLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHHHHHHHhccccccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----C-ChH--HHHHHHHHHHHcCCHHHH
Confidence 55555555532111111 13455678888888887766666665554211 1 111 2224455554 444566
Q ss_pred HHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhh
Q psy6263 557 DTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVC 599 (913)
Q Consensus 557 ~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~ 599 (913)
...++...... |. .....+..+..+...|+....+.+...+
T Consensus 189 ~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQTY-NQ-TAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHhC-CC-CHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666554432 21 1233346677788889887766654433
No 116
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=32.85 E-value=9.5e+02 Score=28.93 Aligned_cols=83 Identities=7% Similarity=0.060 Sum_probs=54.7
Q ss_pred HHhccCChhHHhHhHHHHHHhhcCCCch------------hHHHHHHhhccCccHHHHHHHHHHHHHhhCCCC---hhHH
Q psy6263 683 QLGRYGEPTVRRAVPLAIALCSMSNPAL------------NVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTN---NARL 747 (913)
Q Consensus 683 ~Ll~~~~~~vR~~a~LALgL~~as~~~~------------~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtn---n~ri 747 (913)
.+.+..|+.++-.|.=++|.++.++.-. .+++....+.+....++|..++=|++.+..... +.++
T Consensus 297 ~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i 376 (503)
T PF10508_consen 297 SMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDI 376 (503)
T ss_pred HHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 4557788888888877999998543222 233444444456677888889999998843322 4567
Q ss_pred HHHHHHHHHHhcCChhHH
Q psy6263 748 ATMLRQLAQYHVKNTGHL 765 (913)
Q Consensus 748 ~~~Lr~L~~~~~~d~~~~ 765 (913)
..+.+.......++|...
T Consensus 377 ~~~~~~w~~~~~~~~~~~ 394 (503)
T PF10508_consen 377 LSITESWYESLSGSPLSN 394 (503)
T ss_pred HHHHHHHHHHhcCCchHH
Confidence 677777666666666663
No 117
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=31.52 E-value=47 Score=30.62 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCChhccHHHHHHHHHHHHhhc
Q psy6263 34 QEDLNMLVEKIKGSDKHLYLPALESMRDLIRTST 67 (913)
Q Consensus 34 k~~l~~lv~~L~e~d~~l~~~AL~~L~~~i~~~t 67 (913)
++.++..++.|.++.+-++.+||..|+++|++..
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~ 35 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS 35 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC
Confidence 4567888999999999999999999999999877
No 118
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=30.92 E-value=2.3e+02 Score=31.03 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=46.2
Q ss_pred HHHHhc-cCChhHHhHhHHHHHHhhcCCCch------hHHHHHHhhccCccHHHHHHHHHHHHHhhCCCCh
Q psy6263 681 FGQLGR-YGEPTVRRAVPLAIALCSMSNPAL------NVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNN 744 (913)
Q Consensus 681 ~~~Ll~-~~~~~vR~~a~LALgL~~as~~~~------~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn 744 (913)
+-.+++ ..+|.|+..+.+++|-..+...+. ..+..+..+..++++.||..|+-||.=......|
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 334444 468999999999999987655444 4445566777899999998898888866555545
No 119
>KOG1059|consensus
Probab=30.55 E-value=1.2e+03 Score=29.50 Aligned_cols=200 Identities=18% Similarity=0.196 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhcCCChhccHHHHHHHHHHHHhhccccccCCCchhhhhhhHHHH-------------HHHHhhcCCCh
Q psy6263 32 RLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGAL-------------KEACEKMTDQK 98 (913)
Q Consensus 32 ~~k~~l~~lv~~L~e~d~~l~~~AL~~L~~~i~~~t~s~tsvpkplk~l~~~~~~l-------------~~~ye~~~~~~ 98 (913)
.|+--..-++++|.++||+++..|..-+-++-|.. ||+.-.|+|-+-+| ..+|-..+.=|
T Consensus 178 Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKn-------PknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE 250 (877)
T KOG1059|consen 178 ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN-------PQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE 250 (877)
T ss_pred hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC-------CcccccccHHHHHHHhccCCCeehHHHHHHHhhccccC
Confidence 45556677899999999999999999888887765 46666666654433 44555543221
Q ss_pred ---hHH----HHHHHHHHheeccCcCchhhhhhhhhcCCCCCCCC--cChHHHHHHHHHHHHHHhc--------------
Q psy6263 99 ---PKK----LLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDW--GHEYVRQLEAEIAEEWATN-------------- 155 (913)
Q Consensus 99 ---~r~----l~a~i~S~l~~~~~~~~~~~L~y~L~~~~~~~~~w--g~eYvr~l~~~i~~~y~~~-------------- 155 (913)
-|+ +.-.|=|-++|.+= .||++=-..++ +..- .|+=.-.|..+=.-.+.+-
T Consensus 251 PRLgKKLieplt~li~sT~AmSLl---YECvNTVVa~s---~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~ 324 (877)
T KOG1059|consen 251 PRLGKKLIEPITELMESTVAMSLL---YECVNTVVAVS---MSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMS 324 (877)
T ss_pred chhhhhhhhHHHHHHHhhHHHHHH---HHHHHHheeeh---hccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHH
Confidence 122 23344455555432 35555444441 1111 1222222211111111111
Q ss_pred --cCChhHHHHHHHHHHHHHhccCCHHHHHHHHHhhCchhhHHHHHhccChHHHHHHHHhh-cccCCChhhHHHHHHHHH
Q psy6263 156 --KYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNC-ALYVEEPERSVITNGVLN 232 (913)
Q Consensus 156 --~~~~~~L~~lv~~iv~~~l~~n~e~eAidlalE~~~ld~i~~~v~~~~~~ri~~Yl~~~-~~~~~~~~~~~vl~~~~~ 232 (913)
-...++..+--.+++=.|+.+.++ .++++-+|++...|++.|-..|.+-|..- ..--...+|.+++..+..
T Consensus 325 KI~ktHp~~Vqa~kdlIlrcL~DkD~------SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~ 398 (877)
T KOG1059|consen 325 KILKTHPKAVQAHKDLILRCLDDKDE------SIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIIS 398 (877)
T ss_pred HHhhhCHHHHHHhHHHHHHHhccCCc------hhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 123455555566777778866543 35678889999999988877666533321 111112468888888888
Q ss_pred HHhccC-----CHHHHHHHHHhc
Q psy6263 233 NYLKFK-----EYPRALTLALQL 250 (913)
Q Consensus 233 iy~~~~-----~~~~al~~al~L 250 (913)
||.+-+ +|--++.+.+.|
T Consensus 399 iCS~snY~~ItdFEWYlsVlveL 421 (877)
T KOG1059|consen 399 ICSQSNYQYITDFEWYLSVLVEL 421 (877)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHH
Confidence 887643 444444444443
No 120
>KOG2973|consensus
Probab=30.53 E-value=66 Score=36.16 Aligned_cols=82 Identities=23% Similarity=0.320 Sum_probs=55.5
Q ss_pred CCCCHHHH-HHHHHHHHHHH--HhcCCChhccHHHHHHHHHHHHhhccccccCCCchhhh--hhhHHHHHHHHhhcCCCh
Q psy6263 24 DEMSEEDK-RLQEDLNMLVE--KIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFL--RNHYGALKEACEKMTDQK 98 (913)
Q Consensus 24 ~~lse~d~-~~k~~l~~lv~--~L~e~d~~l~~~AL~~L~~~i~~~t~s~tsvpkplk~l--~~~~~~l~~~ye~~~~~~ 98 (913)
+++||||. +|=-|| ++.. +=.|+|+++.+--||.|..+.-|..+- ..+ +.-|+.|.++|+..++++
T Consensus 231 ee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GR--------e~lR~kgvYpilRElhk~e~ded 301 (353)
T KOG2973|consen 231 EELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGR--------EVLRSKGVYPILRELHKWEEDED 301 (353)
T ss_pred cccCHHHHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhH--------HHHHhcCchHHHHHHhcCCCcHH
Confidence 49999996 344555 2322 345899999999999999888766431 122 245899999999888874
Q ss_pred hHHHHHHHHHHheeccC
Q psy6263 99 PKKLLCSIISVLAMSQD 115 (913)
Q Consensus 99 ~r~l~a~i~S~l~~~~~ 115 (913)
...+++-++-+-+...
T Consensus 302 -~~~ace~vvq~Lv~~e 317 (353)
T KOG2973|consen 302 -IREACEQVVQMLVRLE 317 (353)
T ss_pred -HHHHHHHHHHHHHhcc
Confidence 5555555555555533
No 121
>KOG2076|consensus
Probab=30.34 E-value=1.3e+03 Score=29.80 Aligned_cols=55 Identities=24% Similarity=0.352 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCChhccHHHHHHHHHHHHhhccccccCCCchhhhhhhHHHHHHHHhhc
Q psy6263 23 PDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKM 94 (913)
Q Consensus 23 ~~~lse~d~~~k~~l~~lv~~L~e~d~~l~~~AL~~L~~~i~~~t~s~tsvpkplk~l~~~~~~l~~~ye~~ 94 (913)
+..|+.|=++|=.+-..+..| .. ..-|.+.+.++||...- .|. -|.+|-.+||.-
T Consensus 132 ~~~l~~~l~~ll~eAN~lfar--g~----~eeA~~i~~EvIkqdp~----~~~-------ay~tL~~IyEqr 186 (895)
T KOG2076|consen 132 KSKLAPELRQLLGEANNLFAR--GD----LEEAEEILMEVIKQDPR----NPI-------AYYTLGEIYEQR 186 (895)
T ss_pred ccccCHHHHHHHHHHHHHHHh--CC----HHHHHHHHHHHHHhCcc----chh-------hHHHHHHHHHHc
Confidence 568888888888888887777 22 25799999999998752 222 244667777754
No 122
>KOG1517|consensus
Probab=28.96 E-value=4.6e+02 Score=34.41 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHhcCCCCC---c--hhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCC-------CHHHHHHHHHhh
Q psy6263 421 YIKAGALLALGIVNCGVRNE---C--DPALALLSDYVLND-SITLRIGAVLGLGLAYAGTK-------RQEVVTLLLPVL 487 (913)
Q Consensus 421 ~~k~GAllaLGLi~aG~~~e---~--d~~l~lL~~~L~~~-~~~v~~gA~LGLGlay~Gs~-------~e~v~e~L~~~L 487 (913)
.-|+=|.+-|..+-.|.... | .+.+..-.+++++. .+..+--.|++||......- +..+.|.|...|
T Consensus 572 EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~L 651 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLL 651 (1387)
T ss_pred HHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHh
Confidence 44455555555555554321 1 23445555667764 57788899999999875432 235678888888
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCC
Q psy6263 488 TDRKSTPEVVAFAAVAASLIYVGTG 512 (913)
Q Consensus 488 ~d~~~~~ev~~~A~laLGLi~lGs~ 512 (913)
.|+ ..||..+|.+|||- |+|.+
T Consensus 652 sD~--vpEVRaAAVFALgt-fl~~~ 673 (1387)
T KOG1517|consen 652 SDP--VPEVRAAAVFALGT-FLSNG 673 (1387)
T ss_pred cCc--cHHHHHHHHHHHHH-Hhccc
Confidence 874 36888999999997 67764
No 123
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=28.94 E-value=8.3e+02 Score=27.04 Aligned_cols=138 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred ccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCch--hHHHHHHhhccCccHHHHHHHHHHH-------HHhhCCCChh
Q psy6263 675 EMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL--NVIDVLNKYSHDLDEEVAHNAIFSM-------GLVGAGTNNA 745 (913)
Q Consensus 675 em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~--~vid~L~~~s~D~d~~Vr~~AiiAL-------GlV~aGtnn~ 745 (913)
.+...++..-.+..++.||..+.-|||+.|.-+.+. +.+..+.+.....+..|+..|+=++ |.-...+...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Q ss_pred --------HHHHHHHHHHHHhcCChhHHHHHHHHHHHhhcCCCceecccccCCCCCCChHHHHHHHHHHHHhhccccccc
Q psy6263 746 --------RLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFLDTKNIIL 817 (913)
Q Consensus 746 --------ri~~~Lr~L~~~~~~d~~~~f~~~iAqGLl~~Gkg~~tLsp~~sd~~~~~~~alagLl~~l~~~l~~~~~i~ 817 (913)
.+.+++...- .+.++..+..+.-+..=+.+.+.... .+.-+..|+. .||++.+.
T Consensus 106 ~~~~~~~~~l~~~l~~~l--~~~~~~~~~~a~EGl~KLlL~~~i~~-----------~~~vL~~Lll---~yF~p~t~-- 167 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFL--DSENPELQAIAVEGLCKLLLSGRISD-----------PPKVLSRLLL---LYFNPSTE-- 167 (298)
T ss_pred cCccchHhHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHhcCCCCc-----------HHHHHHHHHH---HHcCcccC--
Q ss_pred ccchhHHHhhhhhc
Q psy6263 818 GKSHYLLYCLVPAM 831 (913)
Q Consensus 818 ~~~h~l~~~l~lA~ 831 (913)
..+.++.+|+.-+
T Consensus 168 -~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 168 -DNQRLRQCLSVFF 180 (298)
T ss_pred -CcHHHHHHHHHHH
No 124
>KOG1240|consensus
Probab=27.88 E-value=3e+02 Score=36.39 Aligned_cols=131 Identities=21% Similarity=0.201 Sum_probs=76.9
Q ss_pred cccccCchhhHHHHHHHHHHHHhc--CCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHH--HHhccCC--CHHHHHHHHH
Q psy6263 412 DKYLYTSEDYIKAGALLALGIVNC--GVRNECDPALALLSDYVLNDSITLRIGAVLGLG--LAYAGTK--RQEVVTLLLP 485 (913)
Q Consensus 412 ~~yL~s~~~~~k~GAllaLGLi~a--G~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLG--lay~Gs~--~e~v~e~L~~ 485 (913)
...|..+++++|...+-.++-.+. |.....|-++..|..||.+++...|.+-.=.|- .+|+|.+ .+-+.-+|.+
T Consensus 584 ~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q 663 (1431)
T KOG1240|consen 584 SSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQ 663 (1431)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHH
Confidence 345555678999999888887754 655555789999999999997777754333332 2578877 3445555555
Q ss_pred hhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHH
Q psy6263 486 VLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALA 546 (913)
Q Consensus 486 ~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLg 546 (913)
.|.|....+-+....++. +|+-+|--...++-+|++...-- -...+ .|+|-+++++-
T Consensus 664 ~ltD~EE~Viv~aL~~ls-~Lik~~ll~K~~v~~i~~~v~Pl--L~hPN-~WIR~~~~~iI 720 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLS-ILIKLGLLRKPAVKDILQDVLPL--LCHPN-LWIRRAVLGII 720 (1431)
T ss_pred hccCcchhhHHHHHHHHH-HHHHhcccchHHHHHHHHhhhhh--eeCch-HHHHHHHHHHH
Confidence 666654222122223333 56666655554444444432210 01223 68888877653
No 125
>KOG0212|consensus
Probab=27.18 E-value=1.3e+03 Score=28.56 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=105.5
Q ss_pred HHHHHhcCCChhccHHHHHHHHHHHHhhccccccCCCchhhhhhhHHHHHHHHhhcCCChhHHHHHHHHHHheeccCcCc
Q psy6263 39 MLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVE 118 (913)
Q Consensus 39 ~lv~~L~e~d~~l~~~AL~~L~~~i~~~t~s~tsvpkplk~l~~~~~~l~~~ye~~~~~~~r~l~a~i~S~l~~~~~~~~ 118 (913)
-++..|.+.+.++...+|+-|-.+..++.+- -+|+....|-+.|...+-- .+..++.|+-.++--++ ..
T Consensus 381 tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~---------~~~~fl~sLL~~f~e~~~~-l~~Rg~lIIRqlC~lL~-aE 449 (675)
T KOG0212|consen 381 TLLKTLSDRSDEVVLLALSLLASICSSSNSP---------NLRKFLLSLLEMFKEDTKL-LEVRGNLIIRQLCLLLN-AE 449 (675)
T ss_pred HHHHhhcCchhHHHHHHHHHHHHHhcCcccc---------cHHHHHHHHHHHHhhhhHH-HHhhhhHHHHHHHHHhC-HH
Confidence 3556677888899999999888877766641 4566677777777654332 56777888888887776 21
Q ss_pred hhhhhhhhhcCCCCCCCCcChHHHHHHHHHH-------HHHHhc----cCChhHHHHHHHHHHH-----------HHhcc
Q psy6263 119 QECLKYCLMAKQKDVGDWGHEYVRQLEAEIA-------EEWATN----KYEKPQLLELIEDIIQ-----------FDMKH 176 (913)
Q Consensus 119 ~~~L~y~L~~~~~~~~~wg~eYvr~l~~~i~-------~~y~~~----~~~~~~L~~lv~~iv~-----------~~l~~ 176 (913)
=-||--++-..- +..++|..+++.-.- +-|+-| +-..++...++..++. -|+-.
T Consensus 450 ---~IYr~~a~ILe~-e~nl~FAstMV~~Ln~iLlTStELf~LR~~Lk~lsn~es~~lF~cLy~sWchnPva~~SLClLt 525 (675)
T KOG0212|consen 450 ---RIYRSIADILER-EENLKFASTMVQALNTILLTSTELFQLRNKLKDLSNEESQNLFCCLYRSWCHNPVATLSLCLLT 525 (675)
T ss_pred ---HHHHHHHHHHhc-cccchHHHHHHHHHHhhhcccHHHHHHHHHHHhccChhhhHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 134444443222 235666655553221 122222 1123344445444433 44444
Q ss_pred CCHHHHHHHHHhhCc----------hhhHHHHHhccChHHHHHHHHhhcccCCChhhHHHHHHHHHHHhccCC
Q psy6263 177 NAEIQACDLLMEIDH----------LELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKE 239 (913)
Q Consensus 177 n~e~eAidlalE~~~----------ld~i~~~v~~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~iy~~~~~ 239 (913)
..|..|-+++.--.+ +|++.+.++...+..+.+-++.-.++. =+.++++.+.+-+++
T Consensus 526 QnYqhA~~liq~fa~~eitvd~L~elDKLVqLiEsPIFtylRLqLLe~~~~p------yL~kaLyGlLMLLPQ 592 (675)
T KOG0212|consen 526 QNYQHAYDLIQLFADVEITVDFLVELDKLVQLIESPIFTYLRLQLLEPKNNP------YLHKALYGLLMLLPQ 592 (675)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhcchHHHHHHHHhccccCc------hHHHHHHHHHHHccc
Confidence 566666665543332 377777788777777776666544432 166777888776665
No 126
>KOG1155|consensus
Probab=27.10 E-value=2.8e+02 Score=33.13 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=36.2
Q ss_pred ChHHHHHHHHhhcccCCChhhHHHHHHHHHHHhccCCHHHHHHH---HHhcCCch
Q psy6263 203 NYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTL---ALQLNDEP 254 (913)
Q Consensus 203 ~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~iy~~~~~~~~al~~---al~L~d~~ 254 (913)
.-+-.++|-...+..+ .|-|..++..+-++|.|+++..+|+.| ++.++|.+
T Consensus 412 ~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 412 KMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred cchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 3456677655443322 345667999999999999998888877 56677774
No 127
>KOG1943|consensus
Probab=27.08 E-value=1.6e+03 Score=29.76 Aligned_cols=120 Identities=17% Similarity=0.117 Sum_probs=68.0
Q ss_pred ccCChhHHhHhHHHHHHhhcCCC--chhHHHHHHhh-ccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-HhcCC
Q psy6263 686 RYGEPTVRRAVPLAIALCSMSNP--ALNVIDVLNKY-SHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQ-YHVKN 761 (913)
Q Consensus 686 ~~~~~~vR~~a~LALgL~~as~~--~~~vid~L~~~-s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~~-~~~~d 761 (913)
.|.....|...=+.+....|..+ ...+++.|.-- ..-.|..+|.-+..||-=+..-+..--....|-.|-. .-..|
T Consensus 516 dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~ 595 (1133)
T KOG1943|consen 516 DYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKD 595 (1133)
T ss_pred chhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCC
Confidence 34444456665566666666666 45777776432 2235777888888888875543331000011222222 23678
Q ss_pred hhHHHHHHHHHHHhhcCCCceecccccCCCCCCChHHHHHHHHHHHHhh
Q psy6263 762 TGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFL 810 (913)
Q Consensus 762 ~~~~f~~~iAqGLl~~Gkg~~tLsp~~sd~~~~~~~alagLl~~l~~~l 810 (913)
++.++|+-+|.|=+-.+..-+. |+. .-+++..++|+.-...+++
T Consensus 596 ~~~r~g~~la~~ev~~~~~~l~--~~~---~~l~e~~i~~l~~ii~~~~ 639 (1133)
T KOG1943|consen 596 ASMRHGVFLAAGEVIGALRKLE--PVI---KGLDENRIAGLLSIIPPIC 639 (1133)
T ss_pred hHHhhhhHHHHHHHHHHhhhhh--hhh---hhhHHHHhhhhhhhccHHH
Confidence 9999999999887766544433 321 1235667777655444443
No 128
>KOG2908|consensus
Probab=26.63 E-value=6.6e+02 Score=28.94 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=42.2
Q ss_pred HHHhhCchhhHHHHHhccChHHHHHHHHhhcccCCChhhHHHHHHHHHHHhccCCHHHHHHHHHhcCCchhHHHHHhccC
Q psy6263 185 LLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCE 264 (913)
Q Consensus 185 lalE~~~ld~i~~~v~~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~iy~~~~~~~~al~~al~L~d~~~v~~i~~~~~ 264 (913)
+-||++++..+++.+++... +. .-...++..=...++.+-.+-|.+-++|..+-+++++--....+ +.|.
T Consensus 124 ~~L~i~DLk~~kk~ldd~~~--~l----d~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~d~----~~l~ 193 (380)
T KOG2908|consen 124 LKLEINDLKEIKKLLDDLKS--ML----DSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYLGCSDI----DDLS 193 (380)
T ss_pred HHHhcccHHHHHHHHHHHHH--HH----hcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccccc----cccC
Confidence 44578888877777764211 00 00111221123445666666777767766666666542111111 1111
Q ss_pred ChhHHHHHHHHHhh
Q psy6263 265 DPVVRKQLAYMAGR 278 (913)
Q Consensus 265 d~~~~~Qiaf~lar 278 (913)
..-+.|.||+|+-
T Consensus 194 -~se~~~lA~~L~~ 206 (380)
T KOG2908|consen 194 -ESEKQDLAFDLSL 206 (380)
T ss_pred -HHHHHHHHHHHHH
Confidence 1234689999985
No 129
>KOG1920|consensus
Probab=26.37 E-value=1.6e+03 Score=30.00 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=26.5
Q ss_pred HHHHhccCCHHHHHHHHHhcCCchhHHHHHhc
Q psy6263 231 LNNYLKFKEYPRALTLALQLNDEPSVLKIFQL 262 (913)
Q Consensus 231 ~~iy~~~~~~~~al~~al~L~d~~~v~~i~~~ 262 (913)
+..|++-.+|-+|++++..-++-+.+++.++.
T Consensus 1033 v~ll~ka~~~~eAlrva~~~~~~d~iee~l~~ 1064 (1265)
T KOG1920|consen 1033 VALLCKAKEWEEALRVASKAKRDDIIEEVLKP 1064 (1265)
T ss_pred HHHHhhHhHHHHHHHHHHhcccchHHHHHHhH
Confidence 35677778999999999999888888888775
No 130
>KOG1062|consensus
Probab=25.44 E-value=6e+02 Score=32.34 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCChhccHHHHHHHHHHHHhhc
Q psy6263 37 LNMLVEKIKGSDKHLYLPALESMRDLIRTST 67 (913)
Q Consensus 37 l~~lv~~L~e~d~~l~~~AL~~L~~~i~~~t 67 (913)
=--+++.|+++|+.+++-|||-+..+++.+.
T Consensus 352 r~tIleCL~DpD~SIkrralELs~~lvn~~N 382 (866)
T KOG1062|consen 352 RSTILECLKDPDVSIKRRALELSYALVNESN 382 (866)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhcccc
Confidence 3468899999999999999999999998875
No 131
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=25.39 E-value=1.1e+03 Score=27.26 Aligned_cols=54 Identities=15% Similarity=0.036 Sum_probs=36.7
Q ss_pred HHHHhccCChhHHhHhHHHHHHhh-cCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCCh
Q psy6263 681 FGQLGRYGEPTVRRAVPLAIALCS-MSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNN 744 (913)
Q Consensus 681 ~~~Ll~~~~~~vR~~a~LALgL~~-as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn 744 (913)
+-||+.+.+-.+|.-+|-|+.=+. -|...+++++.|-. +++|=+|.=...+..|
T Consensus 374 Li~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~----------qG~IkpLc~~L~~~dN 428 (526)
T COG5064 374 LIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVS----------QGFIKPLCDLLDVVDN 428 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHH----------ccchhHHHHHHhccCc
Confidence 567888899999999999987554 34556677666643 4555555555555555
No 132
>KOG2259|consensus
Probab=25.25 E-value=2.8e+02 Score=34.44 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=57.5
Q ss_pred hHHhHhHHHHHHhhcCCCc--hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHhcCChhHHH
Q psy6263 691 TVRRAVPLAIALCSMSNPA--LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGT--NNARLATMLRQLAQYHVKNTGHLF 766 (913)
Q Consensus 691 ~vR~~a~LALgL~~as~~~--~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGt--nn~ri~~~Lr~L~~~~~~d~~~~f 766 (913)
.||+++.-+++-+..+.|. ...+|.|-.+.+|-..+||.-|+.+|-+|..-- +.-++.++|..|..+ .++++-
T Consensus 388 EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~---s~dvRe 464 (823)
T KOG2259|consen 388 EVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDR---SVDVRE 464 (823)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhc---CHHHHH
Confidence 4999999999999998885 589999999999999999999999999987531 124555566655532 244444
Q ss_pred HHHH
Q psy6263 767 MVRI 770 (913)
Q Consensus 767 ~~~i 770 (913)
+.|-
T Consensus 465 ~l~e 468 (823)
T KOG2259|consen 465 ALRE 468 (823)
T ss_pred HHHH
Confidence 4443
No 133
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=25.15 E-value=8.9e+02 Score=29.14 Aligned_cols=67 Identities=19% Similarity=0.060 Sum_probs=42.3
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhh-cCCCc------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCCh
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCS-MSNPA------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNN 744 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~-as~~~------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn 744 (913)
...+..++..++..+|.-+-=.+.-++ .|... ..+++.|.+...+.|..|+.||+=-++-+.....+
T Consensus 162 ~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 162 LSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG 235 (503)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence 455667777667777764433333333 33221 24777888877788888999998878777763333
No 134
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=24.27 E-value=6.5e+02 Score=24.25 Aligned_cols=97 Identities=18% Similarity=0.102 Sum_probs=55.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHH--HHHhcCCcccHHHHHHHHhcC-CChhhhhHHHHHH
Q psy6263 503 AASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLAL--AITYLGKKDAIDTTLAALEVL-PDPFRSMAKMMLK 579 (913)
Q Consensus 503 aLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgL--gLl~~G~~e~~~~ll~~L~~~-~~pi~r~~~~~~l 579 (913)
-++.++=..|+++-.-.+.+...+. .++. ...+-+.+++ .+--+|+.+++..+++..... +++..........
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~---gL~~-~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAA---GLSG-ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc---CCCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 3444444555555554555544442 1333 3444444444 566689999999988877653 4432222223345
Q ss_pred HHHHhccCCH-HHHHHHHhhhhccC
Q psy6263 580 MCAYAGSGDV-LVVQEFLHVCSEHY 603 (913)
Q Consensus 580 glAyaGTGn~-~~Iq~LLh~~~~~~ 603 (913)
+++....|.. ++++.+|..+.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la~~~ 106 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALAETL 106 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5666666654 89999998777653
No 135
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=24.00 E-value=3.6e+02 Score=29.11 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhcc-CccHHHHHHHHHHHH
Q psy6263 658 VAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSH-DLDEEVAHNAIFSMG 736 (913)
Q Consensus 658 ~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~-D~d~~Vr~~AiiALG 736 (913)
...++..++.+|+ .+.+...+..+.......-+...++|.+....|++ ..++..+.+... ++++. .+...+|
T Consensus 183 ~~~l~~~li~~~~---~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~-~~Al~~~~~~~~~~p~d~---~~~~~~a 255 (280)
T PF13429_consen 183 RNALAWLLIDMGD---YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY-EEALEYLEKALKLNPDDP---LWLLAYA 255 (280)
T ss_dssp HHHHHHHHCTTCH---HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H-HHHHHHHHHHHHHSTT-H---HHHHHHH
T ss_pred HHHHHHHHHHCCC---hHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc-cccccccccccccccccc---ccccccc
Confidence 3456777777764 23344555555554322223344566666666654 345566655543 44332 2334444
Q ss_pred HhhCCCCh
Q psy6263 737 LVGAGTNN 744 (913)
Q Consensus 737 lV~aGtnn 744 (913)
-+....+.
T Consensus 256 ~~l~~~g~ 263 (280)
T PF13429_consen 256 DALEQAGR 263 (280)
T ss_dssp HHHT----
T ss_pred cccccccc
Confidence 44444444
No 136
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=23.90 E-value=97 Score=22.72 Aligned_cols=27 Identities=30% Similarity=0.339 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCChhccHHHHHHHHHHH
Q psy6263 37 LNMLVEKIKGSDKHLYLPALESMRDLI 63 (913)
Q Consensus 37 l~~lv~~L~e~d~~l~~~AL~~L~~~i 63 (913)
++.+++.|+.++++++..|+..|+++.
T Consensus 14 i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 14 LPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 788999999999999999999998764
No 137
>COG3817 Predicted membrane protein [Function unknown]
Probab=23.39 E-value=2.7e+02 Score=30.50 Aligned_cols=61 Identities=25% Similarity=0.311 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHH--hhcCCCCcHHHHHHHHH-----HHHHHHhcCCCHHHHHHHHHHHH
Q psy6263 459 LRIGAVLGLGLAYAGTKRQEVVTLLLP--VLTDRKSTPEVVAFAAV-----AASLIYVGTGYHEVASAILQTLI 525 (913)
Q Consensus 459 v~~gA~LGLGlay~Gs~~e~v~e~L~~--~L~d~~~~~ev~~~A~l-----aLGLi~lGs~n~~v~~~lL~~l~ 525 (913)
+.+|++++..++..=++... ...+.+ .+.|. ++.++.+ +||.+|.+.|-.+++..+.+...
T Consensus 131 l~i~~i~a~vla~~mt~~~p-~~~~~E~~rl~d~-----v~wa~iLPQ~LaaLG~vFa~aGvG~~ia~L~~~~i 198 (313)
T COG3817 131 LGIAAIVATVLACVMTKQTP-KAAVQEARRLMDQ-----VSWAAILPQMLAALGAVFASAGVGDVIAHLISEII 198 (313)
T ss_pred HHHHHHHHHHHHHHHhccCh-hhHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHc
Confidence 66788888888877766532 111111 11110 1112222 78999999998888887776554
No 138
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=23.37 E-value=4.6e+02 Score=24.13 Aligned_cols=70 Identities=17% Similarity=0.079 Sum_probs=43.1
Q ss_pred hccCChhHHhHhHHHHHHhh-cCC----CchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHh
Q psy6263 685 GRYGEPTVRRAVPLAIALCS-MSN----PALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYH 758 (913)
Q Consensus 685 l~~~~~~vR~~a~LALgL~~-as~----~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~~~~ 758 (913)
+++..+.||..+-.-|.=+. ..+ ....+++.+....+|.|++|-.|||=+++-+.-...+. ++..|.+.|
T Consensus 12 L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~----vl~~L~~~y 86 (92)
T PF10363_consen 12 LNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE----VLPILLDEY 86 (92)
T ss_pred ccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH----HHHHHHHHH
Confidence 34555566654443333222 222 12478888888889999999999988877776544442 444455545
No 139
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=22.62 E-value=3.2e+02 Score=27.35 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=24.1
Q ss_pred HHHHHHhccCCHHHHHHHHH-hhCchhhHHHHHh
Q psy6263 168 DIIQFDMKHNAEIQACDLLM-EIDHLELLDKHMD 200 (913)
Q Consensus 168 ~iv~~~l~~n~e~eAidlal-E~~~ld~i~~~v~ 200 (913)
+-++.++++-+|.+|+|.+| ...+-+.+-..+.
T Consensus 23 ~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~ 56 (148)
T PF09384_consen 23 SKYDKLLRKFRYKKALDAALVKNKSPEVVVAVLE 56 (148)
T ss_pred hHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHHH
Confidence 45677888899999999999 5555555555443
No 140
>KOG0292|consensus
Probab=22.46 E-value=1.6e+02 Score=37.38 Aligned_cols=88 Identities=22% Similarity=0.345 Sum_probs=50.6
Q ss_pred HHHHHHhhCchhhHHHHHhccChHHH---HHHHHhhcccCCChhhHHHHHHHHHHHhccCCHHHHHHHHHhc---CC---
Q psy6263 182 ACDLLMEIDHLELLDKHMDVTNYPRV---CLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQL---ND--- 252 (913)
Q Consensus 182 AidlalE~~~ld~i~~~v~~~~~~ri---~~Yl~~~~~~~~~~~~~~vl~~~~~iy~~~~~~~~al~~al~L---~d--- 252 (913)
-++|.+|.+|-++ .+.+..+. ..|...|- +.+.-+.-.|+++.+.+.|++.|-+|--.+-+| .-
T Consensus 1046 i~gL~~E~~Rr~l-----~~~~~~~~~ElAaYFt~~~--Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1046 IVGLSVELERRKL-----KKPNLEQQLELAAYFTHCK--LQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred Hhhheeeeeeccc-----CCchHHHHHHHHHHhhcCC--CCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 3556666666432 33343343 33665543 233457778999999999999888776555443 22
Q ss_pred -chhHHHHHhcc-CChhHHHHHHHHH
Q psy6263 253 -EPSVLKIFQLC-EDPVVRKQLAYMA 276 (913)
Q Consensus 253 -~~~v~~i~~~~-~d~~~~~Qiaf~l 276 (913)
.+.++.+...+ .|+.-++||-||-
T Consensus 1119 ~A~q~rki~~a~eknp~Da~~l~yd~ 1144 (1202)
T KOG0292|consen 1119 VAEQARKIKQAAEKNPTDAYELNYDP 1144 (1202)
T ss_pred HHHHHHHHHHHhhcCcccccccCccc
Confidence 13444455544 3555566655553
No 141
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=22.22 E-value=3.2e+02 Score=33.40 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=24.1
Q ss_pred hHHHHHHhhccCccHHHHHHHHHHHHHhhCCCCh--hHHHHHHHHHH
Q psy6263 711 NVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNN--ARLATMLRQLA 755 (913)
Q Consensus 711 ~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn--~ri~~~Lr~L~ 755 (913)
.+|+.+..+..|-|..||..||=+|-.++-.++. +||+.+|-||-
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL 105 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLL 105 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHH
Confidence 5666666666666666666666666666654432 56666655544
No 142
>PHA03033 hypothetical protein; Provisional
Probab=21.12 E-value=31 Score=33.46 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhh--ccccccC---------CCchhhhhhhHHHHHHHH
Q psy6263 53 LPALESMRDLIRTS--TTSMTSV---------PMPLKFLRNHYGALKEAC 91 (913)
Q Consensus 53 ~~AL~~L~~~i~~~--t~s~tsv---------pkplk~l~~~~~~l~~~y 91 (913)
..||..++.++.+- +.+||+. -|-||++|+|++..+++|
T Consensus 90 ~r~l~n~~~~~~~~~i~~~m~~~~~i~~~y~~~~~~~y~~~~~~~~~nly 139 (142)
T PHA03033 90 LRALDNFKEIIEKDKIADIMSHMKFIEDNYETDKLLKYIRDHIPEEKNLY 139 (142)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhccccccchHHHHHHHhCcccccee
Confidence 56788888877654 4566653 456677777777666655
No 143
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=21.04 E-value=1.2e+02 Score=30.17 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=37.7
Q ss_pred HHHHHhcCCChhccHHHHHHHHHHHHhhccccccCCCchhhhhhhHHHHHHHHhhcCCC
Q psy6263 39 MLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQ 97 (913)
Q Consensus 39 ~lv~~L~e~d~~l~~~AL~~L~~~i~~~t~s~tsvpkplk~l~~~~~~l~~~ye~~~~~ 97 (913)
.+...|..+|+++++.||+-|.+ |-. +.|.||-+.|+.+-++.+|.
T Consensus 21 ~~~~LL~~~d~~vQklAL~cll~-----~k~--------~~l~pY~d~L~~Lldd~~fr 66 (141)
T PF07539_consen 21 ALLRLLSSRDPEVQKLALDCLLT-----WKD--------PYLTPYKDNLENLLDDKTFR 66 (141)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH-----hCc--------HHHHhHHHHHHHHcCcchHH
Confidence 35577889999999999999876 632 48999999999999887653
No 144
>PF13461 C-term_anchor: Cell-wall surface anchor repeat; PDB: 2KVZ_A.
Probab=20.84 E-value=70 Score=26.58 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=13.8
Q ss_pred ecCCCcceeeEE----eeccceeccccCCCCceeeceeeeecc
Q psy6263 839 LDENQEPVSVSV----RVGQAVDVIGKAGTPKTIAGVHTHTTP 877 (913)
Q Consensus 839 ~d~~l~~~~v~v----rvg~avd~vg~ag~pk~itg~qth~tP 877 (913)
+|++++.|.-+. .+|++.++ +||+|.||.-..+|
T Consensus 2 ~D~~G~~i~~~~~~~G~~G~~Y~~-----~~~~I~gY~l~~~~ 39 (57)
T PF13461_consen 2 VDENGNEIAPPKTLTGKVGESYTT-----EAKTIPGYTLVSIP 39 (57)
T ss_dssp E-SSS-EEEEEEEE---TT--------------GGGEEEEEE-
T ss_pred CCCCcCCcCCCeEecCCCCCccEe-----CCceeCCEEEeecC
Confidence 588888774222 26666666 78999999765553
No 145
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=20.55 E-value=1.6e+02 Score=28.25 Aligned_cols=72 Identities=19% Similarity=0.124 Sum_probs=35.8
Q ss_pred HHHHHHHhcCC--ChhccHHHHHHHHHHHHhhccccccCCCchhhhhhhHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy6263 37 LNMLVEKIKGS--DKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISV 109 (913)
Q Consensus 37 l~~lv~~L~e~--d~~l~~~AL~~L~~~i~~~t~s~tsvpkplk~l~~~~~~l~~~ye~~~~~~~r~l~a~i~S~ 109 (913)
|..+++.|.++ |.+-.+.||+...++||....=-|.|..--.+|...+-.|++-|+...|. ..+.-|.|+=.
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe-~~R~~alval~ 78 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFE-ELRQNALVALV 78 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHH-HHHHHHHHHHH
Confidence 34567777744 58899999999999999886311233322233333344455667777886 45555555433
No 146
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=20.18 E-value=1.7e+03 Score=27.63 Aligned_cols=212 Identities=9% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHHHHH
Q psy6263 503 AASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCA 582 (913)
Q Consensus 503 aLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglA 582 (913)
+|--.|.-.++.+.+..+++.+.++ ...-+-++.-|+.-.|+.+.+..+++.+....-...... ...+.-+
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~~--------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t-~~~ll~a 334 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPEK--------TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT-FSIMIRI 334 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCC--------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH
Q ss_pred HhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHH
Q psy6263 583 YAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALG 662 (913)
Q Consensus 583 yaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lg 662 (913)
|+..|.....++++..+...-- .+++ ....+|.
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~--------------------------------------------~~d~---~~~~~Li 367 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGF--------------------------------------------PLDI---VANTALV 367 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCC--------------------------------------------CCCe---eehHHHH
Q ss_pred HHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCch--hHHHHHHhhccCccHHHHHHHHHHHHHhhC
Q psy6263 663 VAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL--NVIDVLNKYSHDLDEEVAHNAIFSMGLVGA 740 (913)
Q Consensus 663 iali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~--~vid~L~~~s~D~d~~Vr~~AiiALGlV~a 740 (913)
-++...|+ .+.|.++|+.+.+ +++...-.|.-|+.-.|.... .+++.+.+.-..+|...-.+.+-|.+-.|.
T Consensus 368 ~~y~k~G~---~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 368 DLYSKWGR---MEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred HHHHHCCC---HHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Q ss_pred CCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q psy6263 741 GTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGK 779 (913)
Q Consensus 741 Gtnn~ri~~~Lr~L~~~~~~d~~~~f~~~iAqGLl~~Gk 779 (913)
- .+..++++.+.+.+.-.|+..--..+..++.-.|.
T Consensus 442 ~---~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 442 S---EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred H---HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
No 147
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=20.11 E-value=1.6e+03 Score=27.34 Aligned_cols=11 Identities=0% Similarity=-0.290 Sum_probs=5.4
Q ss_pred HHHHHhccCCH
Q psy6263 579 KMCAYAGSGDV 589 (913)
Q Consensus 579 lglAyaGTGn~ 589 (913)
+|.+|...|+.
T Consensus 473 lg~~~~~~g~~ 483 (615)
T TIGR00990 473 YGELLLDQNKF 483 (615)
T ss_pred HHHHHHHccCH
Confidence 34445555544
Done!