Query psy6263
Match_columns 913
No_of_seqs 287 out of 792
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 21:55:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ady_A RPN2, 26S proteasome re 100.0 6E-150 2E-154 1362.6 58.5 717 38-855 18-789 (963)
2 4ady_A RPN2, 26S proteasome re 100.0 1E-44 3.5E-49 441.2 37.7 541 156-806 65-675 (963)
3 1oyz_A Hypothetical protein YI 98.5 6.9E-06 2.4E-10 87.3 22.7 172 407-599 24-201 (280)
4 1oyz_A Hypothetical protein YI 98.5 1.3E-05 4.5E-10 85.1 22.6 229 445-755 25-261 (280)
5 3ltm_A Alpha-REP4; protein eng 98.3 3.1E-05 1.1E-09 78.6 18.4 58 678-739 145-202 (211)
6 3ltm_A Alpha-REP4; protein eng 98.2 6.8E-05 2.3E-09 76.1 19.6 188 511-777 15-203 (211)
7 1b3u_A Protein (protein phosph 98.2 3.5E-05 1.2E-09 89.6 19.8 318 413-777 210-548 (588)
8 3ltj_A Alpharep-4; protein eng 98.2 8.7E-05 3E-09 74.7 20.2 185 512-774 11-195 (201)
9 3ltj_A Alpharep-4; protein eng 98.2 7.7E-05 2.6E-09 75.0 19.1 77 650-739 121-197 (201)
10 1b3u_A Protein (protein phosph 98.2 3.7E-05 1.3E-09 89.4 18.4 311 416-775 174-507 (588)
11 2jdq_A Importin alpha-1 subuni 98.0 0.00048 1.6E-08 77.3 23.4 307 411-776 25-389 (450)
12 4b8j_A Importin subunit alpha- 97.9 0.00083 2.8E-08 77.8 23.3 312 407-775 75-441 (528)
13 2jdq_A Importin alpha-1 subuni 97.9 0.0018 6.2E-08 72.5 24.5 280 445-778 22-348 (450)
14 1wa5_B Importin alpha subunit; 97.9 0.00054 1.8E-08 79.6 20.5 308 408-775 89-455 (530)
15 1wa5_B Importin alpha subunit; 97.8 0.00085 2.9E-08 77.9 20.9 295 388-740 103-457 (530)
16 4b8j_A Importin subunit alpha- 97.8 0.0016 5.6E-08 75.3 22.3 298 387-740 89-443 (528)
17 2vgl_B AP-2 complex subunit be 97.7 0.0042 1.4E-07 73.6 24.5 137 386-526 100-246 (591)
18 4fdd_A Transportin-1; heat rep 97.6 0.012 4.1E-07 72.4 28.7 331 417-787 101-480 (852)
19 2vgl_B AP-2 complex subunit be 97.6 0.0068 2.3E-07 71.8 24.0 93 411-507 91-187 (591)
20 1w63_A Adapter-related protein 97.5 0.0035 1.2E-07 74.8 21.4 98 677-777 314-414 (618)
21 2z6g_A B-catenin; FULL-length, 97.5 0.008 2.8E-07 73.7 24.0 281 407-743 151-475 (780)
22 1w63_A Adapter-related protein 97.5 0.0055 1.9E-07 73.1 22.0 100 410-515 111-212 (618)
23 4fdd_A Transportin-1; heat rep 97.5 0.015 5.1E-07 71.5 26.5 354 386-778 334-743 (852)
24 4hxt_A De novo protein OR329; 97.4 0.019 6.5E-07 58.6 22.0 67 677-743 171-244 (252)
25 3ul1_B Importin subunit alpha- 97.3 0.022 7.6E-07 66.0 24.1 282 409-744 60-391 (510)
26 1u6g_C TIP120 protein, CAND1; 97.3 0.018 6E-07 73.9 25.3 276 413-739 55-402 (1230)
27 2bpt_A Importin beta-1 subunit 97.3 0.046 1.6E-06 66.5 27.1 317 415-776 104-481 (861)
28 1ibr_B P95, importin beta-1 su 97.2 0.062 2.1E-06 60.0 25.0 88 654-742 345-439 (462)
29 3tpo_A Importin subunit alpha- 97.1 0.042 1.4E-06 63.9 23.8 244 445-744 121-410 (529)
30 1qgr_A Protein (importin beta 97.1 0.13 4.6E-06 62.5 28.4 121 654-775 345-477 (876)
31 1jdh_A Beta-catenin; beta-cate 97.1 0.11 3.8E-06 59.3 26.1 279 408-743 19-342 (529)
32 2z6h_A Catenin beta-1, beta-ca 96.9 0.3 1E-05 58.0 28.4 282 407-743 15-339 (644)
33 4db8_A Armadillo-repeat protei 96.7 0.047 1.6E-06 56.1 17.7 61 678-738 182-249 (252)
34 2bpt_A Importin beta-1 subunit 96.7 0.1 3.5E-06 63.3 22.7 277 413-743 376-714 (861)
35 2z6g_A B-catenin; FULL-length, 96.6 0.22 7.5E-06 61.0 25.0 309 407-777 116-472 (780)
36 4hxt_A De novo protein OR329; 96.6 0.12 4.1E-06 52.5 19.3 103 678-780 130-244 (252)
37 1te4_A Conserved protein MTH18 96.5 0.0023 7.8E-08 60.3 5.2 50 683-736 80-129 (131)
38 3ul1_B Importin subunit alpha- 96.5 0.14 4.8E-06 59.2 21.1 311 383-739 68-429 (510)
39 3now_A UNC-45 protein, SD10334 96.4 0.37 1.3E-05 59.2 25.4 341 380-778 255-695 (810)
40 4db6_A Armadillo repeat protei 96.4 0.048 1.6E-06 54.4 14.6 62 678-739 140-208 (210)
41 3tpo_A Importin subunit alpha- 96.4 0.15 5.2E-06 59.1 20.8 273 412-738 125-447 (529)
42 1u6g_C TIP120 protein, CAND1; 96.4 0.14 4.8E-06 65.6 22.2 90 650-740 189-284 (1230)
43 4db6_A Armadillo repeat protei 96.3 0.076 2.6E-06 52.9 15.7 99 677-775 97-207 (210)
44 1jdh_A Beta-catenin; beta-cate 96.2 0.34 1.2E-05 55.2 22.4 276 444-778 18-340 (529)
45 1qgr_A Protein (importin beta 96.1 0.53 1.8E-05 57.1 24.3 116 390-508 346-478 (876)
46 1te4_A Conserved protein MTH18 96.0 0.02 7E-07 53.6 8.6 85 679-773 45-129 (131)
47 2z6h_A Catenin beta-1, beta-ca 95.8 1.5 5.2E-05 51.9 26.0 275 444-777 15-336 (644)
48 2vgl_A Adaptor protein complex 95.4 1.5 5.2E-05 52.1 24.0 97 676-775 329-431 (621)
49 3l9t_A Putative uncharacterize 95.1 1.8 6.2E-05 45.2 20.3 203 508-774 29-237 (240)
50 4db8_A Armadillo-repeat protei 95.1 0.35 1.2E-05 49.4 15.0 67 677-743 139-212 (252)
51 1ibr_B P95, importin beta-1 su 94.5 7 0.00024 43.1 25.1 235 452-739 10-287 (462)
52 2qk2_A LP04448P; mini spindles 94.5 1.8 6E-05 44.4 18.7 134 654-788 74-216 (242)
53 3now_A UNC-45 protein, SD10334 94.4 5.7 0.0002 48.7 25.5 101 678-778 625-738 (810)
54 2qk2_A LP04448P; mini spindles 94.3 0.38 1.3E-05 49.5 13.2 87 654-744 115-209 (242)
55 2xpi_A Anaphase-promoting comp 94.3 2.2 7.4E-05 48.8 20.9 290 401-762 285-584 (597)
56 2xpi_A Anaphase-promoting comp 94.1 4.4 0.00015 46.2 22.8 220 500-782 307-532 (597)
57 3hym_B Cell division cycle pro 93.0 5.6 0.00019 40.9 19.4 262 399-720 33-297 (330)
58 1xm9_A Plakophilin 1; armadill 92.8 16 0.00054 41.3 27.1 112 411-524 7-136 (457)
59 2qk1_A Protein STU2; STU2P, XM 92.5 1.3 4.6E-05 46.2 13.8 77 678-754 148-234 (249)
60 1xqr_A HSPBP1 protein; armadil 92.5 0.86 2.9E-05 49.2 12.5 66 677-742 168-240 (296)
61 3nmw_A APC variant protein; AR 92.4 15 0.00052 40.3 24.5 67 678-744 265-338 (354)
62 3mkr_A Coatomer subunit epsilo 92.0 10 0.00035 39.8 20.1 90 462-565 66-158 (291)
63 1w3b_A UDP-N-acetylglucosamine 91.3 18 0.0006 38.7 26.0 272 399-744 78-354 (388)
64 3l6x_A Catenin delta-1; cateni 91.1 24 0.00084 41.5 23.8 69 678-746 310-390 (584)
65 3ieg_A DNAJ homolog subfamily 91.1 16 0.00053 37.8 23.5 185 399-596 48-257 (359)
66 3hym_B Cell division cycle pro 91.0 6.5 0.00022 40.4 17.0 229 399-692 67-304 (330)
67 2gw1_A Mitochondrial precursor 90.8 22 0.00074 39.1 22.2 123 460-595 236-360 (514)
68 2y4t_A DNAJ homolog subfamily 90.3 23 0.00077 38.4 24.7 313 397-764 35-365 (450)
69 2qk1_A Protein STU2; STU2P, XM 90.0 17 0.00057 37.7 19.0 52 654-705 163-220 (249)
70 2y4t_A DNAJ homolog subfamily 89.8 25 0.00085 38.0 25.0 94 425-526 27-122 (450)
71 1fch_A Peroxisomal targeting s 89.6 18 0.00062 37.9 19.4 265 380-707 17-300 (368)
72 3ro2_A PINS homolog, G-protein 89.5 11 0.00038 38.3 17.2 196 398-596 15-246 (338)
73 3l6x_A Catenin delta-1; cateni 88.9 42 0.0015 39.5 27.6 115 390-505 26-159 (584)
74 2vgl_A Adaptor protein complex 88.4 11 0.00038 44.6 18.2 103 353-471 108-215 (621)
75 3ulq_A Response regulator aspa 88.2 18 0.00061 38.8 18.5 195 402-600 117-330 (383)
76 3tjz_B Coatomer subunit gamma; 87.8 5.5 0.00019 44.1 13.9 58 678-735 289-348 (355)
77 4a1s_A PINS, partner of inscut 87.7 16 0.00055 39.1 17.7 205 389-596 47-286 (411)
78 2pl2_A Hypothetical conserved 87.7 19 0.00063 35.6 16.9 14 502-515 43-56 (217)
79 3nmw_A APC variant protein; AR 87.6 23 0.00077 38.9 18.9 117 677-798 215-350 (354)
80 3ieg_A DNAJ homolog subfamily 86.9 30 0.001 35.5 25.5 28 658-688 157-184 (359)
81 3mkr_A Coatomer subunit epsilo 86.7 22 0.00074 37.3 17.6 179 395-597 41-224 (291)
82 2pl2_A Hypothetical conserved 85.9 15 0.0005 36.4 15.0 155 426-596 7-175 (217)
83 1w3b_A UDP-N-acetylglucosamine 84.3 46 0.0016 35.3 25.3 114 658-782 240-355 (388)
84 3nmz_A APC variant protein; pr 84.2 62 0.0021 36.8 22.6 63 680-742 383-452 (458)
85 1xm9_A Plakophilin 1; armadill 84.1 60 0.0021 36.4 25.2 100 387-487 17-136 (457)
86 3ulq_A Response regulator aspa 84.0 19 0.00065 38.6 15.9 205 390-599 143-365 (383)
87 4eqf_A PEX5-related protein; a 83.5 39 0.0013 35.4 18.0 81 657-744 215-296 (365)
88 3edt_B KLC 2, kinesin light ch 83.1 32 0.0011 33.9 16.2 102 421-525 40-154 (283)
89 3fp2_A TPR repeat-containing p 82.6 63 0.0022 35.6 21.5 178 403-597 217-402 (537)
90 2ho1_A Type 4 fimbrial biogene 81.5 42 0.0014 32.9 21.5 22 502-523 75-96 (252)
91 3tjz_B Coatomer subunit gamma; 81.5 17 0.0006 40.1 14.3 64 677-740 140-205 (355)
92 1xqr_A HSPBP1 protein; armadil 81.2 4.3 0.00015 43.7 9.1 101 678-778 84-197 (296)
93 3q15_A PSP28, response regulat 80.1 45 0.0015 35.6 17.1 206 389-599 140-362 (378)
94 4eqf_A PEX5-related protein; a 80.0 19 0.00066 37.9 13.9 234 422-718 63-306 (365)
95 3nf1_A KLC 1, kinesin light ch 79.2 39 0.0013 34.0 15.5 170 392-564 29-222 (311)
96 3mkq_B Coatomer subunit alpha; 77.7 19 0.00065 35.8 11.8 102 169-280 11-128 (177)
97 3l9t_A Putative uncharacterize 77.7 18 0.00061 37.8 11.9 126 442-577 70-200 (240)
98 3sf4_A G-protein-signaling mod 77.4 74 0.0025 33.3 25.1 307 426-780 11-361 (406)
99 2ho1_A Type 4 fimbrial biogene 76.8 58 0.002 31.8 17.3 188 399-600 48-236 (252)
100 2vq2_A PILW, putative fimbrial 76.2 53 0.0018 31.1 19.4 13 577-589 117-129 (225)
101 2q7f_A YRRB protein; TPR, prot 75.5 45 0.0015 32.2 14.2 184 399-599 34-219 (243)
102 3ro3_A PINS homolog, G-protein 74.4 39 0.0013 29.8 12.5 142 457-599 5-155 (164)
103 2db0_A 253AA long hypothetical 74.4 73 0.0025 32.3 14.6 119 474-600 28-154 (253)
104 1xnf_A Lipoprotein NLPI; TPR, 74.3 70 0.0024 31.5 15.5 238 402-702 19-259 (275)
105 3uq3_A Heat shock protein STI1 73.2 60 0.0021 31.5 14.5 184 401-597 18-231 (258)
106 1fch_A Peroxisomal targeting s 73.2 91 0.0031 32.3 20.1 96 461-565 64-160 (368)
107 2q7f_A YRRB protein; TPR, prot 72.6 70 0.0024 30.8 16.5 26 659-687 163-188 (243)
108 4a1s_A PINS, partner of inscut 72.2 1E+02 0.0036 32.5 23.1 277 459-782 46-359 (411)
109 3vtx_A MAMA; tetratricopeptide 70.9 67 0.0023 29.8 15.8 27 658-687 144-170 (184)
110 3qky_A Outer membrane assembly 70.4 58 0.002 32.5 13.9 155 425-586 16-198 (261)
111 3as5_A MAMA; tetratricopeptide 70.3 63 0.0022 29.2 14.0 159 423-597 7-168 (186)
112 1hz4_A MALT regulatory protein 70.1 1.1E+02 0.0038 32.1 22.2 200 397-600 23-242 (373)
113 3ro2_A PINS homolog, G-protein 70.0 93 0.0032 31.1 21.0 123 656-781 184-318 (338)
114 3nmz_A APC variant protein; pr 69.9 1.5E+02 0.0052 33.5 22.4 101 677-777 331-450 (458)
115 3fp2_A TPR repeat-containing p 68.8 1.4E+02 0.0049 32.7 22.6 88 499-597 244-334 (537)
116 1xi4_A Clathrin heavy chain; a 67.6 36 0.0012 44.3 13.5 143 104-262 1358-1556(1630)
117 3sf4_A G-protein-signaling mod 67.4 1.2E+02 0.0042 31.5 22.3 273 463-782 11-323 (406)
118 1hz4_A MALT regulatory protein 65.4 1.4E+02 0.0047 31.3 16.7 208 391-600 94-320 (373)
119 3oc3_A Helicase MOT1, MOT1; re 65.3 1.3E+02 0.0045 35.5 16.2 115 436-584 168-290 (800)
120 3as5_A MAMA; tetratricopeptide 62.4 89 0.0031 28.2 15.7 129 460-599 7-136 (186)
121 3qou_A Protein YBBN; thioredox 62.3 80 0.0027 32.5 13.4 125 462-599 118-246 (287)
122 3opb_A SWI5-dependent HO expre 60.3 3E+02 0.01 33.5 22.0 61 678-738 656-726 (778)
123 3mkq_A Coatomer beta'-subunit; 58.7 28 0.00095 41.3 10.0 50 226-279 725-774 (814)
124 2xm6_A Protein corresponding t 57.6 2.3E+02 0.0078 31.3 25.4 278 378-740 99-410 (490)
125 2pzi_A Probable serine/threoni 57.2 2.9E+02 0.01 32.4 18.7 19 747-766 648-666 (681)
126 4f3v_A ESX-1 secretion system 57.0 48 0.0016 35.3 10.4 132 390-526 104-236 (282)
127 4gyw_A UDP-N-acetylglucosamine 56.8 2.1E+02 0.0071 34.4 17.2 95 423-525 8-104 (723)
128 3gw4_A Uncharacterized protein 56.4 67 0.0023 30.0 10.7 104 421-525 23-134 (203)
129 1xi4_A Clathrin heavy chain; a 55.7 58 0.002 42.5 12.3 104 166-279 1137-1263(1630)
130 1lsh_A Lipovitellin (LV-1N, LV 55.5 3.5E+02 0.012 34.0 19.6 83 443-526 356-447 (1056)
131 3qky_A Outer membrane assembly 53.8 1.8E+02 0.006 28.8 15.7 154 538-740 16-196 (261)
132 3edt_B KLC 2, kinesin light ch 53.4 1.7E+02 0.0057 28.5 15.7 101 66-189 10-111 (283)
133 3qou_A Protein YBBN; thioredox 52.3 72 0.0025 32.9 10.9 151 425-588 118-270 (287)
134 3cv0_A Peroxisome targeting si 51.4 2E+02 0.0068 28.8 19.7 233 420-718 17-265 (327)
135 3ro3_A PINS homolog, G-protein 50.7 1E+02 0.0035 26.9 10.4 105 419-525 4-116 (164)
136 3nf1_A KLC 1, kinesin light ch 50.6 2E+02 0.0068 28.5 16.4 176 419-597 22-219 (311)
137 4abn_A Tetratricopeptide repea 50.0 2.1E+02 0.0071 31.9 15.0 77 443-526 86-165 (474)
138 3b2a_A TON_1937, putative unch 49.5 2.4E+02 0.0081 29.6 13.5 106 656-763 94-204 (265)
139 4f3v_A ESX-1 secretion system 48.9 90 0.0031 33.1 10.9 134 500-687 104-237 (282)
140 3q15_A PSP28, response regulat 47.8 2.7E+02 0.0093 29.3 20.0 168 426-597 103-285 (378)
141 3mkq_A Coatomer beta'-subunit; 47.7 99 0.0034 36.4 12.4 80 167-265 633-722 (814)
142 2yhc_A BAMD, UPF0169 lipoprote 45.8 2.2E+02 0.0075 27.6 13.6 29 656-687 185-213 (225)
143 3cv0_A Peroxisome targeting si 44.8 2.5E+02 0.0085 28.0 21.1 96 460-565 20-117 (327)
144 3gyz_A Chaperone protein IPGC; 44.4 2E+02 0.0068 26.8 12.0 90 462-561 37-128 (151)
145 2xm6_A Protein corresponding t 43.7 3.6E+02 0.012 29.6 24.9 278 378-740 63-374 (490)
146 2yhc_A BAMD, UPF0169 lipoprote 42.2 2.5E+02 0.0085 27.2 14.7 57 544-600 152-211 (225)
147 4ga2_A E3 SUMO-protein ligase 42.1 2E+02 0.0069 26.1 11.3 27 657-686 67-93 (150)
148 2vq2_A PILW, putative fimbrial 40.5 2.3E+02 0.0079 26.4 20.9 163 499-719 9-173 (225)
149 1ouv_A Conserved hypothetical 39.9 2.9E+02 0.0098 27.3 20.8 232 384-694 2-258 (273)
150 3oc3_A Helicase MOT1, MOT1; re 39.5 44 0.0015 39.3 6.9 92 413-509 181-290 (800)
151 3vtx_A MAMA; tetratricopeptide 39.2 2.3E+02 0.0078 26.0 14.0 25 502-526 9-33 (184)
152 2qfc_A PLCR protein; TPR, HTH, 36.8 2.1E+02 0.007 29.1 11.4 122 400-522 87-220 (293)
153 3tt9_A Plakophilin-2; cell adh 36.8 56 0.0019 33.7 6.8 70 674-743 6-84 (233)
154 2ifu_A Gamma-SNAP; membrane fu 35.9 3.7E+02 0.013 27.5 15.8 129 391-522 77-219 (307)
155 4abn_A Tetratricopeptide repea 35.7 4.9E+02 0.017 28.8 18.3 80 499-586 103-183 (474)
156 2xcb_A PCRH, regulatory protei 35.7 2.3E+02 0.0078 25.2 10.3 92 462-563 19-112 (142)
157 3uq3_A Heat shock protein STI1 35.4 3E+02 0.01 26.2 18.0 98 424-525 5-106 (258)
158 2gw1_A Mitochondrial precursor 35.4 4.5E+02 0.015 28.2 29.3 84 399-488 17-101 (514)
159 3gw4_A Uncharacterized protein 34.5 2.8E+02 0.0095 25.5 14.0 137 459-597 24-171 (203)
160 2b6c_A Hypothetical protein EF 32.9 1.4E+02 0.0049 30.0 9.1 76 674-751 122-198 (220)
161 3gyz_A Chaperone protein IPGC; 32.8 3E+02 0.01 25.5 12.0 115 476-599 8-131 (151)
162 1lrv_A LRV, leucine-rich repea 32.4 12 0.00041 39.1 0.8 45 681-737 199-243 (244)
163 1lrv_A LRV, leucine-rich repea 32.2 11 0.00037 39.4 0.4 69 681-774 175-243 (244)
164 4gyw_A UDP-N-acetylglucosamine 31.6 5.5E+02 0.019 30.6 15.4 25 500-524 11-35 (723)
165 2vsy_A XCC0866; transferase, g 31.3 2.6E+02 0.0091 31.5 12.1 146 402-562 3-153 (568)
166 1a17_A Serine/threonine protei 29.5 2.9E+02 0.01 24.3 12.4 59 462-525 14-74 (166)
167 4gmo_A Putative uncharacterize 29.2 62 0.0021 38.6 6.4 63 677-740 36-105 (684)
168 4ga2_A E3 SUMO-protein ligase 29.2 3.2E+02 0.011 24.7 10.3 77 442-525 14-92 (150)
169 2r5s_A Uncharacterized protein 28.2 3.1E+02 0.01 25.3 10.2 26 658-686 111-136 (176)
170 1hxi_A PEX5, peroxisome target 27.3 2.1E+02 0.007 25.1 8.2 88 501-596 20-109 (121)
171 3u3w_A Transcriptional activat 25.9 4.3E+02 0.015 26.6 11.6 165 398-564 85-261 (293)
172 2fo7_A Synthetic consensus TPR 25.2 2.9E+02 0.0099 22.8 12.2 22 576-597 106-127 (136)
173 3mkq_B Coatomer subunit alpha; 25.1 2.2E+02 0.0075 28.1 8.5 89 180-278 9-104 (177)
174 3urz_A Uncharacterized protein 24.9 3.9E+02 0.013 25.4 10.5 150 575-779 6-172 (208)
175 3jxy_A Alkylpurine DNA glycosy 24.4 5.1E+02 0.017 26.1 11.6 77 674-752 129-206 (232)
176 1qqe_A Vesicular transport pro 23.3 5.8E+02 0.02 25.7 14.3 179 384-563 71-263 (292)
177 2xcb_A PCRH, regulatory protei 23.1 3.9E+02 0.013 23.5 9.9 88 499-594 19-107 (142)
178 2xev_A YBGF; tetratricopeptide 23.0 3.4E+02 0.012 22.8 9.7 95 501-599 5-102 (129)
179 3mv2_A Coatomer subunit alpha; 22.3 85 0.0029 34.1 5.2 73 163-247 155-230 (325)
180 1hxi_A PEX5, peroxisome target 21.4 3.5E+02 0.012 23.5 8.6 15 502-516 55-69 (121)
181 2pm7_A Protein WEB1, protein t 21.0 2E+02 0.0068 32.0 8.1 106 166-277 146-274 (399)
182 3opb_A SWI5-dependent HO expre 20.8 1.5E+02 0.0053 36.0 7.5 65 677-741 607-684 (778)
183 2vgx_A Chaperone SYCD; alterna 20.6 4.7E+02 0.016 23.5 10.5 96 461-565 21-117 (148)
184 3u4t_A TPR repeat-containing p 20.6 5.7E+02 0.02 24.6 20.1 223 502-782 7-237 (272)
185 1hh8_A P67PHOX, NCF-2, neutrop 20.0 5.3E+02 0.018 23.9 13.6 26 574-599 122-147 (213)
No 1
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=100.00 E-value=6.3e-150 Score=1362.62 Aligned_cols=717 Identities=21% Similarity=0.279 Sum_probs=646.1
Q ss_pred HHHHHHhcCCChhccHHHHHHHHHHHHhhccccccCCCchhhhhhhHHHHHHHHhhcCCChhHHHHHHHHHHheeccCcC
Q psy6263 38 NMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNV 117 (913)
Q Consensus 38 ~~lv~~L~e~d~~l~~~AL~~L~~~i~~~t~s~tsvpkplk~l~~~~~~l~~~ye~~~~~~~r~l~a~i~S~l~~~~~~~ 117 (913)
.+++++|+|+|++|+.+||++|+++|+++|+ +|++++++||++||+.+|+ .|++||+|+||||||++ +
T Consensus 18 ~~~l~lL~e~~~~lk~~aL~~l~~~vd~~w~----------eia~~i~~ie~l~ed~~f~-~r~laalvaSkvyy~Lg-~ 85 (963)
T 4ady_A 18 APLLALLRENQDSVKTYALESINNVVDQLWS----------EISNELPDIEALYDDDTFS-DREMAALIASKVYYNLG-E 85 (963)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH----------HHHTTHHHHHHHHSCTTCT-THHHHHHHHHHHHHHHT-C
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhhhHH----------HHHhhHHHHHHHHcCCCcc-hHHHHHHHHHHHheecc-c
Confidence 4689999999999999999999999999995 9999999999999999998 79999999999999999 9
Q ss_pred chhhhhhhhhcCCCCCCCCcChHHHHHHHHHHHHHHhc--------c------CChhHHHHHHHHHHHHHhccCCHHHHH
Q psy6263 118 EQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATN--------K------YEKPQLLELIEDIIQFDMKHNAEIQAC 183 (913)
Q Consensus 118 ~~~~L~y~L~~~~~~~~~wg~eYvr~l~~~i~~~y~~~--------~------~~~~~L~~lv~~iv~~~l~~n~e~eAi 183 (913)
|++||+|||.+|..|+.++|||||+||+++|||+|++. + ..+++|+.+|++||+||++||+|+|||
T Consensus 86 ~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~iv~~cl~hnae~~Av 165 (963)
T 4ady_A 86 YESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKLAL 165 (963)
T ss_dssp HHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999876 1 468999999999999999999999999
Q ss_pred HHHHhhCchhhHHHHHhc-------cChHHHHHHHHhhcccCCChh--hHHHHHHHHHHHhccC--CHHHHHHHHHhcCC
Q psy6263 184 DLLMEIDHLELLDKHMDV-------TNYPRVCLYLSNCALYVEEPE--RSVITNGVLNNYLKFK--EYPRALTLALQLND 252 (913)
Q Consensus 184 dlalE~~~ld~i~~~v~~-------~~~~ri~~Yl~~~~~~~~~~~--~~~vl~~~~~iy~~~~--~~~~al~~al~L~d 252 (913)
|||||++|+|+|+++|++ +|+.|+|+|+++|++++++|+ |.+||++++++|.+++ +|+++|+|+++|||
T Consensus 166 dLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~dy~~a~~~ai~LnD 245 (963)
T 4ady_A 166 GIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLND 245 (963)
T ss_dssp HHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHcCC
Confidence 999999999999999998 899999999999999887764 6899999999999987 99999999999999
Q ss_pred chhHHHHHhc---cCChhHHHHHHHHHhh--cccccc-CCCCCCCchhHHHhhcCccchhhhhhhhhhhcccCCCChHHH
Q psy6263 253 EPSVLKIFQL---CEDPVVRKQLAYMAGR--QQITIE-LPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPKTPEEV 326 (913)
Q Consensus 253 ~~~v~~i~~~---~~d~~~~~Qiaf~lar--~~~~~~-~~~~~~~~~~l~~il~N~~l~~~f~~l~k~ldil~~k~~~di 326 (913)
++.|+++|++ |+|.+++|||||||+| +|.|+. +. +.+.+. . ...+.++||+++.++++
T Consensus 246 ~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~----------~~l~~~---e---~~~kL~~ILsg~~~~~L 309 (963)
T 4ady_A 246 AGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILV----------TELTAQ---G---YDPALLNILSGLPTCDY 309 (963)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHH----------HHHHHT---T---CCHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcccchHHHHHHH----------Hhcccc---c---hhHHHHHHhCCCChHHH
Confidence 9999999999 7899999999999998 566653 21 111110 0 12455556666666666
Q ss_pred HHHHhhhhcCCCCCC----CCCccch--hhhhHHHHHHHHHHhcccCcccccccccCCcccccccchhhHHHHHHhhhhh
Q psy6263 327 YKTWLENIVLRPTYN----LDVPVDS--ARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIY 400 (913)
Q Consensus 327 yk~~L~~~~~~~~~~----~~~~~ds--ar~~lA~~~~naf~naG~~~D~~l~~~~~~~wl~k~~~~~k~sA~aslGlI~ 400 (913)
|++||.+++ +.++. +|+.+|+ +++|+|++|||||||+||++|+||+ ++.+|++|+++|+||+|+||+|+||
T Consensus 310 yl~FL~~~n-~~d~~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~--~~~~Wl~k~~~~~k~sA~aSLGlIh 386 (963)
T 4ady_A 310 YNTFLLNNK-NIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIK--ANLPWLGKAQNWAKFTATASLGVIH 386 (963)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHH--HCHHHHHHCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc-ccchhhHHHHHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhh--cchhhhhccchHHHHHHHHHhhhhc
Confidence 666664320 22211 1333444 5899999999999999999999999 7788999999999999999999999
Q ss_pred cccCCCcccccccccc---CchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCC--------HHHHHHHHHHHHH
Q psy6263 401 LWDVDGGLTPIDKYLY---TSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDS--------ITLRIGAVLGLGL 469 (913)
Q Consensus 401 ~~~~~~~l~~l~~yL~---s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~--------~~v~~gA~LGLGl 469 (913)
.||.++|+++|++||| ++++++++||++|+|++++|+++ +++++|.++|.+++ +.+++||+||||+
T Consensus 387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 9999999999999999 77899999999999999999986 48999999998765 7899999999999
Q ss_pred HhccCCCHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHh
Q psy6263 470 AYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITY 549 (913)
Q Consensus 470 ay~Gs~~e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~ 549 (913)
+|+||+++++++.|++++.+++. .+..+|++||||+|+||||.++++.|+++++++ ++|+++|++++|||+++
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~--~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-----~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSA--TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-----QHGNITRGLAVGLALIN 536 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-----SCHHHHHHHHHHHHHHT
T ss_pred HhcCCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHhhh
Confidence 99999999999999999987552 234499999999999999999999999999973 35699999999999999
Q ss_pred cCCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCC
Q psy6263 550 LGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGST 629 (913)
Q Consensus 550 ~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (913)
+|++++++.+++.|..+++|+.||++++++||||+||||+.+||+|||.|.++.
T Consensus 537 ~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-------------------------- 590 (963)
T 4ady_A 537 YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-------------------------- 590 (963)
T ss_dssp TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--------------------------
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--------------------------
Confidence 999999999999999999999999999999999999999999999999998764
Q ss_pred CCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc
Q psy6263 630 ESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA 709 (913)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~ 709 (913)
++++ |+.| ++|+++|.+|+ ++|++|++++|++|+||+||+++|+|||++++|||+
T Consensus 591 -------------------~d~V-RraA--ViaLGlI~~g~---~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 591 -------------------NDDV-RRAA--VIALGFVLLRD---YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp -------------------CHHH-HHHH--HHHHHHHTSSS---CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC
T ss_pred -------------------cHHH-HHHH--HHHHHhhccCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc
Confidence 2456 7655 45555666676 589999999999999999999999999999999999
Q ss_pred hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChh---HHHHHHHHHHHHh---cCChhHHHHHHHHHHHhhcCCCcee
Q psy6263 710 LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNA---RLATMLRQLAQYH---VKNTGHLFMVRIAQGLTHMGKGTVS 783 (913)
Q Consensus 710 ~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~---ri~~~Lr~L~~~~---~~d~~~~f~~~iAqGLl~~Gkg~~t 783 (913)
.+++++|++++||+|++||++|++|||+||+||||+ |++++||||++|| |+|++++||++|||||+||||||+|
T Consensus 646 ~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~t 725 (963)
T 4ady_A 646 QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVT 725 (963)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEE
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceE
Confidence 999999999999999999999999999999999987 9999999999998 4689999999999999999999999
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHhhcccccccccchhHHHhhhhhcccceeeeecC-CCcceeeEEeeccc
Q psy6263 784 LSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDE-NQEPVSVSVRVGQA 855 (913)
Q Consensus 784 Lsp~~sd~~~~~~~alagLl~~l~~~l~~~~~i~~~~h~l~~~l~lA~~Pr~li~~d~-~l~~~~v~vrvg~a 855 (913)
|+|+||||+++|++|++||++|+++| +||||+|||++||+|||+||+|+ |||+++..++....
T Consensus 726 is~~~s~~~~~~~~a~~Gl~~f~q~w---------yw~pl~~~lsla~~Pt~li~l~e~dL~~p~~~~~~~~~ 789 (963)
T 4ady_A 726 IQLENADTGTLDTKSVVGLVMFSQFW---------YWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYAK 789 (963)
T ss_dssp ECSBCTTTCCBCHHHHHHHHHHTTTT---------TCGGGGGGGGGGEEECBEEEEETTTTBEECCEEEECSC
T ss_pred EEeeeccCCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHhcCCcEEEEecccccCCCceEEeeCCC
Confidence 99999999999999999999999999 59999999999999999999999 99999888887543
No 2
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=100.00 E-value=1e-44 Score=441.19 Aligned_cols=541 Identities=16% Similarity=0.228 Sum_probs=316.9
Q ss_pred cCChhHHHHHHHHHHHHHhccCCHHHHHHHHHhhCch---hhHHHHHhccChHHHHHHHHhhccc-----------CCCh
Q psy6263 156 KYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHL---ELLDKHMDVTNYPRVCLYLSNCALY-----------VEEP 221 (913)
Q Consensus 156 ~~~~~~L~~lv~~iv~~~l~~n~e~eAidlalE~~~l---d~i~~~v~~~~~~ri~~Yl~~~~~~-----------~~~~ 221 (913)
.++..+|.++|-..|.|++ ++|.+|+.+||.++.+ +.=.+|++.-...+|..|...+..- ..+|
T Consensus 65 ~f~~r~laalvaSkvyy~L--g~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~ 142 (963)
T 4ady_A 65 TFSDREMAALIASKVYYNL--GEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDP 142 (963)
T ss_dssp TCTTHHHHHHHHHHHHHHH--TCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCH
T ss_pred CcchHHHHHHHHHHHheec--cchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhccccccccccccccCH
Confidence 5678899999999999999 9999999999997765 3344577766667788888776421 1234
Q ss_pred hhHHHHHHHHHHHhccCCHHHHHHHHHhcCCchhHHHHHhcc--CC-hhHHHHHH-HHHhhccccccCCCCCCCc--hh-
Q psy6263 222 ERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLC--ED-PVVRKQLA-YMAGRQQITIELPDEMPDK--ND- 294 (913)
Q Consensus 222 ~~~~vl~~~~~iy~~~~~~~~al~~al~L~d~~~v~~i~~~~--~d-~~~~~Qia-f~lar~~~~~~~~~~~~~~--~~- 294 (913)
.-..+.+-++.-+.+.+.|.+||.+++....-+.++++++++ ++ ......+| |.+...+.... +++ ..
T Consensus 143 rL~~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~-----p~~fr~~v 217 (963)
T 4ady_A 143 KLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVT-----NSKFRSSI 217 (963)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCC-----ChHHHHHH
Confidence 445678888888889999999999999999999999999862 11 11111222 33332111000 000 00
Q ss_pred ---HHHhhcCccchhhhhhhhhhhcccCCCChHHHHHH------------------------HhhhhcCCCCCCCCCccc
Q psy6263 295 ---LQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKT------------------------WLENIVLRPTYNLDVPVD 347 (913)
Q Consensus 295 ---l~~il~N~~l~~~f~~l~k~ldil~~k~~~diyk~------------------------~L~~~~~~~~~~~~~~~d 347 (913)
+-+++..-....+|..+.+-..+.+++...+++++ |+.+- ...+......+
T Consensus 218 Lr~l~~Iy~k~~~~dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v--~~~l~~~e~~~ 295 (963)
T 4ady_A 218 LRKSFDFLMNMPNCDYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEIL--VTELTAQGYDP 295 (963)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHH--HHHHHHTTCCH
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcccchHHHHHH--HHhccccchhH
Confidence 00111100011111111111222222222222222 11100 00000000000
Q ss_pred hhh----hhHHHHHHHHHHhcccCcccccccccCCcccccccchhh--HHHHHHhhhhhcccCCCc-cccccccccCchh
Q psy6263 348 SAR----HNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGM--LSAAASLGLIYLWDVDGG-LTPIDKYLYTSED 420 (913)
Q Consensus 348 sar----~~lA~~~~naf~naG~~~D~~l~~~~~~~wl~k~~~~~k--~sA~aslGlI~~~~~~~~-l~~l~~yL~s~~~ 420 (913)
.-+ ....+-+-+-|.+..-..|..+- +.-.+-+- .++ ++ ..++.+.|++|.|...+. +..-.+|++++.+
T Consensus 296 kL~~ILsg~~~~~Lyl~FL~~~n~~d~~~l-~~~K~~ld-~r~-s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~ 372 (963)
T 4ady_A 296 ALLNILSGLPTCDYYNTFLLNNKNIDIGLL-NKSKSSLD-GKF-SLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQN 372 (963)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHCCCCHHHH-HHHHHHSC-TTS-HHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCT
T ss_pred HHHHHhCCCChHHHHHHHHHhccccchhhH-HHHHhhhc-chh-hHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccch
Confidence 000 11122233344443222233221 00000010 011 12 345678999999977655 4444579999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhc---CCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCC-C----
Q psy6263 421 YIKAGALLALGIVNCGVRNECDPALALLSDYVL---NDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRK-S---- 492 (913)
Q Consensus 421 ~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~---~~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~-~---- 492 (913)
|.+.||+++||+||.|+.++ ++.+|.+||. ++++.+++||++|||++++|+++ ++++.|.+++.+++ +
T Consensus 373 ~~k~sA~aSLGlIh~g~~~~---gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-~~~~lL~~~L~~~~~~~~~~ 448 (963)
T 4ady_A 373 WAKFTATASLGVIHKGNLLE---GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-DTTDYLKNIIVENSGTSGDE 448 (963)
T ss_dssp HHHHHHHHHHHHHTSSCTTT---HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-HHHHHHHHHHHHHSSCCSCH
T ss_pred HHHHHHHHHhhhhccCchHH---HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHcCcccccccc
Confidence 99999999999999987764 7999999998 67789999999999999999986 68999999997533 1
Q ss_pred -cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhh
Q psy6263 493 -TPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFR 571 (913)
Q Consensus 493 -~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~ 571 (913)
...+..+|++|||++|+||+++++++.|++.+.+.+ . ....+++++||
T Consensus 449 ~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-----~-~~~~~AalALG------------------------- 497 (963)
T 4ady_A 449 DVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-----A-TSGEAAALGMG------------------------- 497 (963)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-----H-HHHHHHHHHHH-------------------------
T ss_pred ccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-----H-HHHHHHHHHHh-------------------------
Confidence 122556899999999999999999999999988621 1 12224444444
Q ss_pred hhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhh
Q psy6263 572 SMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKD 651 (913)
Q Consensus 572 r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 651 (913)
+.|+||||..+++.||+++.++.+ ++
T Consensus 498 ---------li~vGTgn~~ai~~LL~~~~e~~~---------------------------------------------e~ 523 (963)
T 4ady_A 498 ---------LCMLGTGKPEAIHDMFTYSQETQH---------------------------------------------GN 523 (963)
T ss_dssp ---------HHHTTCCCHHHHHHHHHHHHHCSC---------------------------------------------HH
T ss_pred ---------hhhcccCCHHHHHHHHHHHhccCc---------------------------------------------HH
Confidence 455566666666666666654321 23
Q ss_pred hhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhh-ccCccHHHHHH
Q psy6263 652 LSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKY-SHDLDEEVAHN 730 (913)
Q Consensus 652 v~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~-s~D~d~~Vr~~ 730 (913)
+ +|.+ ++|++++.+|+ ++.+..+++.|....+|++|+++++|+|+.|+|+++..+++.|.+. ..|.+++||++
T Consensus 524 v-rR~a--algLGll~~g~---~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRra 597 (963)
T 4ady_A 524 I-TRGL--AVGLALINYGR---QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRA 597 (963)
T ss_dssp H-HHHH--HHHHHHHTTTC---GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred H-HHHH--HHHHHhhhCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHH
Confidence 3 4433 33333334443 3444555555666666666666666666666666666666644443 34566666666
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhcCCCce----ecccccCCC-CCCChHHHHHHHHH
Q psy6263 731 AIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTV----SLSPFHTDR-QILNPVALAGLLVV 805 (913)
Q Consensus 731 AiiALGlV~aGtnn~ri~~~Lr~L~~~~~~d~~~~f~~~iAqGLl~~Gkg~~----tLsp~~sd~-~~~~~~alagLl~~ 805 (913)
|++|||+|++|... .+.++++.|.. +.||++|+++.+|+|++++|+|+. +|+|+.+|. .++++.|+.+|..+
T Consensus 598 AViaLGlI~~g~~e-~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 598 AVIALGFVLLRDYT-TVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp HHHHHHHHTSSSCS-SHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCHH-HHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 66666666666543 12333333332 235666666666666666666653 355555555 45666666666554
Q ss_pred H
Q psy6263 806 L 806 (913)
Q Consensus 806 l 806 (913)
.
T Consensus 675 g 675 (963)
T 4ady_A 675 L 675 (963)
T ss_dssp S
T ss_pred h
Confidence 4
No 3
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.55 E-value=6.9e-06 Score=87.28 Aligned_cols=172 Identities=13% Similarity=0.080 Sum_probs=92.4
Q ss_pred ccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH---HHHHHH
Q psy6263 407 GLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ---EVVTLL 483 (913)
Q Consensus 407 ~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e---~v~e~L 483 (913)
+...|-+.|.++++.++..|+.+||-+. . ..++..|...+.+.++.+|..|+.+||-. |...+ .+.+.|
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~----~--~~~~~~L~~~l~d~~~~vR~~A~~aL~~l--~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG----G--QDAVRLAIEFCSDKNYIRRDIGAFILGQI--KICKKCEDNVFNIL 95 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC----C--HHHHHHHHHHHTCSSHHHHHHHHHHHHHS--CCCTTTHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC----C--chHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccccccchHHHHHH
Confidence 4455556666677788888888888763 1 34677777788888888888888888774 32222 233333
Q ss_pred HHh-hcCCCCcHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHH
Q psy6263 484 LPV-LTDRKSTPEVVAFAAVAASLIYVGTG--YHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTL 560 (913)
Q Consensus 484 ~~~-L~d~~~~~ev~~~A~laLGLi~lGs~--n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll 560 (913)
... +.|+ +.++...|+.+||-+.-+.. ..+++..++..+.+. +..+++.++.++| .+|..+.++.++
T Consensus 96 ~~~~~~d~--~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~------~~~vR~~a~~aL~--~~~~~~~~~~L~ 165 (280)
T 1oyz_A 96 NNMALNDK--SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDK------STNVRRATAFAIS--VINDKATIPLLI 165 (280)
T ss_dssp HHHHHHCS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS------CHHHHHHHHHHHH--TC---CCHHHHH
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCC------CHHHHHHHHHHHH--hcCCHHHHHHHH
Confidence 322 2333 24466677778875432221 234444444444321 1123333333333 445555556555
Q ss_pred HHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhh
Q psy6263 561 AALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVC 599 (913)
Q Consensus 561 ~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~ 599 (913)
+.+. ++++..|..++.++|- .|..+..++..|+..+
T Consensus 166 ~~l~-d~~~~vr~~a~~aL~~--~~~~~~~~~~~L~~~l 201 (280)
T 1oyz_A 166 NLLK-DPNGDVRNWAAFAINI--NKYDNSDIRDCFVEML 201 (280)
T ss_dssp HHHT-CSSHHHHHHHHHHHHH--HTCCCHHHHHHHHHHT
T ss_pred HHHc-CCCHHHHHHHHHHHHh--hccCcHHHHHHHHHHh
Confidence 5443 4556666665555433 3444555555555544
No 4
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.48 E-value=1.3e-05 Score=85.12 Aligned_cols=229 Identities=13% Similarity=0.080 Sum_probs=143.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6263 445 LALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTL 524 (913)
Q Consensus 445 l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l 524 (913)
+..|...|.+++..+|..|+-+||-. | .+++...|...+.|++ ..+...|+.+||- +|.... ....++..+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~--~--~~~~~~~L~~~l~d~~--~~vR~~A~~aL~~--l~~~~~-~~~~l~~~L 95 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLR--G--GQDAVRLAIEFCSDKN--YIRRDIGAFILGQ--IKICKK-CEDNVFNIL 95 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH--C--CHHHHHHHHHHHTCSS--HHHHHHHHHHHHH--SCCCTT-THHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcc--C--CchHHHHHHHHHcCCC--HHHHHHHHHHHHH--hccccc-cchHHHHHH
Confidence 56677788888999999999999975 3 5788888998887654 3466688888885 454322 223333333
Q ss_pred ----HcCCcCcccccchhhHHHHHHHHHhcCCc----ccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHH
Q psy6263 525 ----IELPVSELQDGHYSRFLPLALAITYLGKK----DAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFL 596 (913)
Q Consensus 525 ----~~~~~~~~~~e~i~r~~~lgLgLl~~G~~----e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LL 596 (913)
... . +..+++.++-+||-+.-+.. +.++.+++. ..++++..|..++.++| . .|+..++..|+
T Consensus 96 ~~~~~~d----~-~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~-l~d~~~~vR~~a~~aL~--~--~~~~~~~~~L~ 165 (280)
T 1oyz_A 96 NNMALND----K-SACVRATAIESTAQRCKKNPIYSPKIVEQSQIT-AFDKSTNVRRATAFAIS--V--INDKATIPLLI 165 (280)
T ss_dssp HHHHHHC----S-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-TTCSCHHHHHHHHHHHH--T--C---CCHHHHH
T ss_pred HHHHhcC----C-CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHH-hhCCCHHHHHHHHHHHH--h--cCCHHHHHHHH
Confidence 221 1 21455555556766543322 233333333 45678888888777554 2 34445666776
Q ss_pred hhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCccccccc
Q psy6263 597 HVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEM 676 (913)
Q Consensus 597 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em 676 (913)
..+.+. ++.+ +..+..+||-. +.. .+.
T Consensus 166 ~~l~d~----------------------------------------------~~~v-r~~a~~aL~~~--~~~----~~~ 192 (280)
T 1oyz_A 166 NLLKDP----------------------------------------------NGDV-RNWAAFAININ--KYD----NSD 192 (280)
T ss_dssp HHHTCS----------------------------------------------SHHH-HHHHHHHHHHH--TCC----CHH
T ss_pred HHHcCC----------------------------------------------CHHH-HHHHHHHHHhh--ccC----cHH
Confidence 665421 2345 66666666542 211 233
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLA 755 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~ 755 (913)
+...+-.++++.++.||..++.+||-+. ...++..|.+...|++ ||..|+.|||-++- +++...|..+.
T Consensus 193 ~~~~L~~~l~d~~~~vR~~A~~aL~~~~----~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----~~~~~~L~~~l 261 (280)
T 1oyz_A 193 IRDCFVEMLQDKNEEVRIEAIIGLSYRK----DKRVLSVLCDELKKNT--VYDDIIEAAGELGD----KTLLPVLDTML 261 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTT----CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----GGGHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhC----CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----hhhhHHHHHHH
Confidence 4555666778889999999999998875 3466777777766655 88999999998863 34455555544
No 5
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.27 E-value=3.1e-05 Score=78.59 Aligned_cols=58 Identities=10% Similarity=-0.047 Sum_probs=33.4
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhh
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVG 739 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~ 739 (913)
...+..++++.++.||..+..+||-+. ...++..|.++.+|.+..||..|+-+|+-+.
T Consensus 145 ~~~L~~~l~d~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 145 VEPLIKALKDEDGWVRQSAADALGEIG----GERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----SHHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC----chhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 344445556666666666666666652 2455555665555666666666666666554
No 6
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.21 E-value=6.8e-05 Score=76.07 Aligned_cols=188 Identities=19% Similarity=0.155 Sum_probs=127.3
Q ss_pred CCCHHHHHHHHHHHHcCCcCcccccchhh-HHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCH
Q psy6263 511 TGYHEVASAILQTLIELPVSELQDGHYSR-FLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDV 589 (913)
Q Consensus 511 s~n~~v~~~lL~~l~~~~~~~~~~e~i~r-~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~ 589 (913)
..+.+.++.+++.+.+. + ...| .++-+|| .+|..+..+.+++.+. ++++..|..++.++|- .|+.
T Consensus 15 ~~~~~~~~~L~~~L~~~------~-~~vR~~A~~~L~--~~~~~~~~~~L~~~l~-~~~~~vr~~a~~aL~~----~~~~ 80 (211)
T 3ltm_A 15 RADPEKVEMYIKNLQDD------S-YYVRRAAAYALG--KIGDERAVEPLIKALK-DEDAWVRRAAADALGQ----IGDE 80 (211)
T ss_dssp -CCGGGHHHHHHHTTCS------S-HHHHHHHHHHHH--HHCCGGGHHHHHHHTT-CSCHHHHHHHHHHHHH----HCCG
T ss_pred hcCHhHHHHHHHHHcCC------C-HHHHHHHHHHHH--HhCCccHHHHHHHHHc-CCCHHHHHHHHHHHHh----hCCH
Confidence 35668888888887642 2 3344 3333444 4577788888888776 5788888887765543 2455
Q ss_pred HHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcC
Q psy6263 590 LVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALG 669 (913)
Q Consensus 590 ~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~g 669 (913)
..+..|+..+.+. ++.+ +..++.+||-. |
T Consensus 81 ~~~~~L~~~l~~~----------------------------------------------~~~v-r~~a~~aL~~~----~ 109 (211)
T 3ltm_A 81 RAVEPLIKALKDE----------------------------------------------DGWV-RQSAAVALGQI----G 109 (211)
T ss_dssp GGHHHHHHHTTCS----------------------------------------------SHHH-HHHHHHHHHHH----C
T ss_pred HHHHHHHHHHcCC----------------------------------------------CHHH-HHHHHHHHHHh----C
Confidence 6677776665321 2344 66666666532 2
Q ss_pred cccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHH
Q psy6263 670 EEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLAT 749 (913)
Q Consensus 670 e~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~ 749 (913)
...+...+-.++.+.++.||..++.+||-+. ...++..|.++.+|.+..||..|+.+||-++. +++..
T Consensus 110 ----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~~ 177 (211)
T 3ltm_A 110 ----DERAVEPLIKALKDEDWFVRIAAAFALGEIG----DERAVEPLIKALKDEDGWVRQSAADALGEIGG----ERVRA 177 (211)
T ss_dssp ----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----HHHHH
T ss_pred ----cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----hhHHH
Confidence 2334555666889999999999999999883 34577888888889999999999999999853 55556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhhc
Q psy6263 750 MLRQLAQYHVKNTGHLFMVRIAQGLTHM 777 (913)
Q Consensus 750 ~Lr~L~~~~~~d~~~~f~~~iAqGLl~~ 777 (913)
.|..+.+ +.|+.++..+.-|++-+.-
T Consensus 178 ~L~~~l~--d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 178 AMEKLAE--TGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHH--HCCHHHHHHHHHHHHC---
T ss_pred HHHHHHh--CCCHHHHHHHHHHHHhcCC
Confidence 6666553 5688888888777665443
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.21 E-value=3.5e-05 Score=89.57 Aligned_cols=318 Identities=14% Similarity=0.038 Sum_probs=182.8
Q ss_pred ccccCchhhHHHHHHHHHHHHhcCCCCC--chhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH----HHHHHHHHh
Q psy6263 413 KYLYTSEDYIKAGALLALGIVNCGVRNE--CDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ----EVVTLLLPV 486 (913)
Q Consensus 413 ~yL~s~~~~~k~GAllaLGLi~aG~~~e--~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e----~v~e~L~~~ 486 (913)
..+..+++.++..|+.++|.+......+ .+.++..+...+.+.+..+|..++-.||.+..+...+ ++...+...
T Consensus 210 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 289 (588)
T 1b3u_A 210 NLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL 289 (588)
T ss_dssp HHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 3344567789999999999876543221 0224455666667778889999999999876543332 345555555
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHh--cCCccc---HH
Q psy6263 487 LTDRKSTPEVVAFAAVAASLIYVGTGYH----EVASAILQTLIELPVSELQDGHYSRFLPLALAITY--LGKKDA---ID 557 (913)
Q Consensus 487 L~d~~~~~ev~~~A~laLGLi~lGs~n~----~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~--~G~~e~---~~ 557 (913)
+.|++ .+++..|+.+||-+.-+.+.. ...+.++.++...-. +. +..+++.++-+++-+. +|.+.. ..
T Consensus 290 l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~-d~-~~~vR~~a~~~l~~l~~~~~~~~~~~~l~ 365 (588)
T 1b3u_A 290 MKDCE--AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS-DA-NQHVKSALASVIMGLSPILGKDNTIEHLL 365 (588)
T ss_dssp HTCSS--HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT-CS-CHHHHHHHHTTGGGGHHHHCHHHHHHHTH
T ss_pred hCCCc--HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc-CC-CHHHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 55543 457778889999876555433 233444444432100 01 2144444444443332 343321 12
Q ss_pred HHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhh
Q psy6263 558 TTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAA 637 (913)
Q Consensus 558 ~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (913)
..+..+..++++-.|..++-+++-.....|.....+.++..+..-..
T Consensus 366 p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~--------------------------------- 412 (588)
T 1b3u_A 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE--------------------------------- 412 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc---------------------------------
Confidence 22333445677888887776655444444433333333333321110
Q ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc----hhHH
Q psy6263 638 NDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA----LNVI 713 (913)
Q Consensus 638 ~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~----~~vi 713 (913)
+. +..+ |..++.+++...-..|.+.-.+.....+..++++.++.||..+.-++|-+....+. ..++
T Consensus 413 ----d~-----~~~v-r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ll 482 (588)
T 1b3u_A 413 ----DA-----KWRV-RLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII 482 (588)
T ss_dssp ----CS-----SHHH-HHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTH
T ss_pred ----CC-----CchH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 01 1233 55556666655444454332334555666778888999999999999887643322 3667
Q ss_pred HHHHhhccCccHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHh-cCChhHHHHHHHHHHHhhc
Q psy6263 714 DVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNA-RLATMLRQLAQYH-VKNTGHLFMVRIAQGLTHM 777 (913)
Q Consensus 714 d~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~-ri~~~Lr~L~~~~-~~d~~~~f~~~iAqGLl~~ 777 (913)
..|.++..|.+..||..++.++|-+.-..+.. -+..++..|.+.. ..+++++..+.-++|-+.-
T Consensus 483 p~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 77777788899999999999998876432221 1122333333332 4567888888888887653
No 8
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.21 E-value=8.7e-05 Score=74.67 Aligned_cols=185 Identities=19% Similarity=0.137 Sum_probs=125.8
Q ss_pred CCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHH
Q psy6263 512 GYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLV 591 (913)
Q Consensus 512 ~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~ 591 (913)
.+......+++.+.+. +..+++.++-+|| .+|..+.++.+++.+. ++++..|..++.++|- . |+...
T Consensus 11 ~~~~~~~~~i~~L~~~------~~~vr~~A~~~L~--~~~~~~~~~~L~~~l~-~~~~~vr~~a~~~L~~--~--~~~~~ 77 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDD------SYYVRRAAAYALG--KIGDERAVEPLIKALK-DEDAWVRRAAADALGQ--I--GDERA 77 (201)
T ss_dssp CCHHHHHHHHHHTTCS------CHHHHHHHHHHHH--HHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHHH--H--CCGGG
T ss_pred cCCcchHHHHHHhcCC------CHHHHHHHHHHHH--hcCChhHHHHHHHHHc-CCCHHHHHHHHHHHHh--h--CCHHH
Confidence 3456667778777652 2133333333444 4577778888888774 6788888887765543 2 45566
Q ss_pred HHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcc
Q psy6263 592 VQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEE 671 (913)
Q Consensus 592 Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ 671 (913)
+..|...+.+. ++.+ +..++.+||-. |
T Consensus 78 ~~~L~~~l~d~----------------------------------------------~~~v-r~~a~~aL~~~----~-- 104 (201)
T 3ltj_A 78 VEPLIKALKDE----------------------------------------------DGWV-RQSAAVALGQI----G-- 104 (201)
T ss_dssp HHHHHHHTTCS----------------------------------------------SHHH-HHHHHHHHHHH----C--
T ss_pred HHHHHHHHcCC----------------------------------------------CHHH-HHHHHHHHHHh----C--
Confidence 77776655321 2444 66666666632 2
Q ss_pred cccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHH
Q psy6263 672 IGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATML 751 (913)
Q Consensus 672 ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~L 751 (913)
...+...+..++++.++.||..++.+||-+. ...++..|.++.+|.+..||..|+.+||-++ .++....|
T Consensus 105 --~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----~~~~~~~L 174 (201)
T 3ltj_A 105 --DERAVEPLIKALKDEDWFVRIAAAFALGEIG----DERAVEPLIKALKDEDGWVRQSAADALGEIG----GERVRAAM 174 (201)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----SHHHHHHH
T ss_pred --cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----chhHHHHH
Confidence 2334555666788899999999999999884 3467788888888999999999999999984 35555566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q psy6263 752 RQLAQYHVKNTGHLFMVRIAQGL 774 (913)
Q Consensus 752 r~L~~~~~~d~~~~f~~~iAqGL 774 (913)
..+.. ..|+.++..+.-|++-
T Consensus 175 ~~~l~--d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 175 EKLAE--TGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHH--HCCHHHHHHHHHHHHH
T ss_pred HHHHh--CCCHHHHHHHHHHHHH
Confidence 66553 4578888888777664
No 9
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.19 E-value=7.7e-05 Score=75.05 Aligned_cols=77 Identities=16% Similarity=0.028 Sum_probs=55.1
Q ss_pred hhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHH
Q psy6263 650 KDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAH 729 (913)
Q Consensus 650 ~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~ 729 (913)
+.+ +..++.+||-. | ...+...+..++++.++.||..+..|||-+ +...++..|.++..|.+..||.
T Consensus 121 ~~v-r~~a~~aL~~~----~----~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~ 187 (201)
T 3ltj_A 121 WFV-RIAAAFALGEI----G----DERAVEPLIKALKDEDGWVRQSAADALGEI----GGERVRAAMEKLAETGTGFARK 187 (201)
T ss_dssp HHH-HHHHHHHHHHH----T----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHH
T ss_pred HHH-HHHHHHHHHHh----C----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CchhHHHHHHHHHhCCCHHHHH
Confidence 344 55555555532 2 223455566777888899999999999888 3456788888888889999999
Q ss_pred HHHHHHHHhh
Q psy6263 730 NAIFSMGLVG 739 (913)
Q Consensus 730 ~AiiALGlV~ 739 (913)
.|+-+|+-+.
T Consensus 188 ~A~~aL~~l~ 197 (201)
T 3ltj_A 188 VAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHH
Confidence 9988887653
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.16 E-value=3.7e-05 Score=89.35 Aligned_cols=311 Identities=11% Similarity=0.028 Sum_probs=176.9
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCCC--chhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhhcC--CC
Q psy6263 416 YTSEDYIKAGALLALGIVNCGVRNE--CDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTD--RK 491 (913)
Q Consensus 416 ~s~~~~~k~GAllaLGLi~aG~~~e--~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d--~~ 491 (913)
..+++.++..|+-++|-+......+ ...++..|...+.+.+..+|..|+-+||.+.-....++..+.++|.+.. .+
T Consensus 174 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d 253 (588)
T 1b3u_A 174 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAED 253 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccC
Confidence 3457889999999999886433221 1235556666677888899999999999876655555555555555421 12
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcc---------cHHH
Q psy6263 492 STPEVVAFAAVAASLIYVGTGYHE----VASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKD---------AIDT 558 (913)
Q Consensus 492 ~~~ev~~~A~laLGLi~lGs~n~~----v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e---------~~~~ 558 (913)
.+..++..|+-+||-+.-+.+... +...+++.+.+ . +..+++.++-++|-+.-.-+. ..-.
T Consensus 254 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-----~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p 327 (588)
T 1b3u_A 254 KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD-----C-EAEVRAAASHKVKEFCENLSADCRENVIMSQILP 327 (588)
T ss_dssp SSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTC-----S-SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCC-----C-cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHH
Confidence 235566788888888765443332 33334444433 1 214566666677655533322 1222
Q ss_pred HHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhc
Q psy6263 559 TLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAAN 638 (913)
Q Consensus 559 ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (913)
.+..+..++++..|.+++.+++-..-..|.......++.....-...
T Consensus 328 ~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d--------------------------------- 374 (588)
T 1b3u_A 328 CIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKD--------------------------------- 374 (588)
T ss_dssp HHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTC---------------------------------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC---------------------------------
Confidence 33344567788888877665553222234333233332222111100
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhc--CCC--chhHHH
Q psy6263 639 DKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSM--SNP--ALNVID 714 (913)
Q Consensus 639 ~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~a--s~~--~~~vid 714 (913)
.++++ |..+..+++-..-..|.+.-.+.....+..++++.+..+|.+++-+++-+.. |.. ...++.
T Consensus 375 ---------~~~~V-r~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 444 (588)
T 1b3u_A 375 ---------ECPEV-RLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNS 444 (588)
T ss_dssp ---------SCHHH-HHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHH
T ss_pred ---------CchHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 02344 5555555554433333210012233344556678889999999999887763 221 247888
Q ss_pred HHHhhccCccHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHH-hcCChhHHHHHHHHHHHh
Q psy6263 715 VLNKYSHDLDEEVAHNAIFSMGLVGAGTNNAR-LATMLRQLAQY-HVKNTGHLFMVRIAQGLT 775 (913)
Q Consensus 715 ~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~r-i~~~Lr~L~~~-~~~d~~~~f~~~iAqGLl 775 (913)
.|.++.+|.+..||..|+-++|-+....++.. ...++..|... .+.++..+..+.-+.|-+
T Consensus 445 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l 507 (588)
T 1b3u_A 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507 (588)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 88888899999999999999998875444321 12233333322 234555666666665544
No 11
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.02 E-value=0.00048 Score=77.32 Aligned_cols=307 Identities=13% Similarity=0.112 Sum_probs=181.7
Q ss_pred ccccccCchhhHHHHHHHHHHHHhcCCCCC-c-----h-hHHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCC------
Q psy6263 411 IDKYLYTSEDYIKAGALLALGIVNCGVRNE-C-----D-PALALLSDYVLND-SITLRIGAVLGLGLAYAGTKR------ 476 (913)
Q Consensus 411 l~~yL~s~~~~~k~GAllaLGLi~aG~~~e-~-----d-~~l~lL~~~L~~~-~~~v~~gA~LGLGlay~Gs~~------ 476 (913)
|-..+.++++.++..|+.+++-+.+...++ . . .++..|...+.+. ++.++..|+-.|+-+..++..
T Consensus 25 l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 104 (450)
T 2jdq_A 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVI 104 (450)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 334455667778888888888654322121 0 1 4666777778777 788999999999987776432
Q ss_pred -HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHH
Q psy6263 477 -QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGY-------HEVASAILQTLIELPVSELQDGHYSRFLPLALAIT 548 (913)
Q Consensus 477 -e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n-------~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl 548 (913)
..+...|...+.++ +.++...|+.+||-+.-.+.. ..++..+++.+.+. .+. .+.+.++-+++-+
T Consensus 105 ~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~----~~~-~v~~~a~~~L~~l 177 (450)
T 2jdq_A 105 QAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ----NRL-TMTRNAVWALSNL 177 (450)
T ss_dssp HTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC----CCH-HHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC----CCH-HHHHHHHHHHHHH
Confidence 23566677777654 345666888888876443210 12344455555421 122 6677777778777
Q ss_pred hcCC---------cccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHH---------HHHHHHhhhhccCCCCCccc
Q psy6263 549 YLGK---------KDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVL---------VVQEFLHVCSEHYTPTTSSA 610 (913)
Q Consensus 549 ~~G~---------~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~---------~Iq~LLh~~~~~~~~~~~~~ 610 (913)
..+. ...++.+++.+. .+++-.+..+++++ .+...+... .+..|++++.+.
T Consensus 178 ~~~~~~~~~~~~~~~~l~~L~~~l~-~~~~~v~~~a~~~L--~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-------- 246 (450)
T 2jdq_A 178 CRGKSPPPEFAKVSPCLNVLSWLLF-VSDTDVLADACWAL--SYLSDGPNDKIQAVIDAGVCRRLVELLMHN-------- 246 (450)
T ss_dssp HCCSSSCCCGGGTGGGHHHHHHHTT-CCCHHHHHHHHHHH--HHHTSSSHHHHHHHHHTTTHHHHHHHTTCS--------
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHH--HHHHCCCcHHHHHHHHcCcHHHHHHHHCCC--------
Confidence 6554 234566666554 45666666655544 444444332 234444444210
Q ss_pred ccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcc-----cccccHHHHHHHHh
Q psy6263 611 KEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEE-----IGSEMSTRIFGQLG 685 (913)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~-----ig~em~~r~~~~Ll 685 (913)
++.+ +..+..+||-.. .+.+ +-..-+...+-.++
T Consensus 247 --------------------------------------~~~v-~~~a~~~L~~l~--~~~~~~~~~~~~~~~l~~L~~ll 285 (450)
T 2jdq_A 247 --------------------------------------DYKV-VSPALRAVGNIV--TGDDIQTQVILNCSALQSLLHLL 285 (450)
T ss_dssp --------------------------------------CHHH-HHHHHHHHHHHT--TSCHHHHHHHHTTTHHHHHHHHT
T ss_pred --------------------------------------chhH-HHHHHHHHHHHh--hCChHHHHHHHHCccHHHHHHHH
Confidence 1333 455555555433 2221 00112455566677
Q ss_pred ccCChhHHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHH-----HHHH
Q psy6263 686 RYGEPTVRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLAT-----MLRQ 753 (913)
Q Consensus 686 ~~~~~~vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~-----~Lr~ 753 (913)
++.++.+|..++.+|+-++.+++. ..++..|.++..|.+..||..|+.+++-+..+.+...+.. ++..
T Consensus 286 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~ 365 (450)
T 2jdq_A 286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKP 365 (450)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 788999999999999999987653 2567778777778899999999999999887533211111 2223
Q ss_pred HHHHh-cCChhHHHHHHHHHHHhh
Q psy6263 754 LAQYH-VKNTGHLFMVRIAQGLTH 776 (913)
Q Consensus 754 L~~~~-~~d~~~~f~~~iAqGLl~ 776 (913)
|.... ..|+..+..+.-|++-+.
T Consensus 366 L~~ll~~~~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 366 LCDLLTVMDSKIVQVALNGLENIL 389 (450)
T ss_dssp HHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33222 356666656655555443
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.90 E-value=0.00083 Score=77.82 Aligned_cols=312 Identities=12% Similarity=0.106 Sum_probs=181.9
Q ss_pred ccccccccccCchhhHHHHHHHHHHHHhcCCCCCc------hhHHHHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCH--
Q psy6263 407 GLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNEC------DPALALLSDYVLNDS-ITLRIGAVLGLGLAYAGTKRQ-- 477 (913)
Q Consensus 407 ~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~------d~~l~lL~~~L~~~~-~~v~~gA~LGLGlay~Gs~~e-- 477 (913)
.+..|-+.|.++++..+..|+.+++-+.++..++. ..++..|...|.+.+ +.++..|+-+|+-+..++...
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 34444555667777888888888887765543221 124556777777766 889999999999887764321
Q ss_pred -----HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCC-HH------HHHHHHHHHHcCCcCcccccchhhHHHHHH
Q psy6263 478 -----EVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGY-HE------VASAILQTLIELPVSELQDGHYSRFLPLAL 545 (913)
Q Consensus 478 -----~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n-~~------v~~~lL~~l~~~~~~~~~~e~i~r~~~lgL 545 (913)
.+...|...+.++ +.++...|+.+||-+...+.. .+ ++..+++.+... .+. .+.+.++-+|
T Consensus 155 ~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~----~~~-~v~~~a~~~L 227 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH----TKL-SMLRNATWTL 227 (528)
T ss_dssp HHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT----CCH-HHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC----CCH-HHHHHHHHHH
Confidence 2556667777653 345667888899977533211 01 233444444221 122 5667777778
Q ss_pred HHHhcCCc--------ccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHH---------HHhhhhccCCCCCc
Q psy6263 546 AITYLGKK--------DAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQE---------FLHVCSEHYTPTTS 608 (913)
Q Consensus 546 gLl~~G~~--------e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~---------LLh~~~~~~~~~~~ 608 (913)
+-+..+.. ..++.+++.+ ...++-.+..++.+ +++...++...++. |++++.+.
T Consensus 228 ~~L~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~a--L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~------ 298 (528)
T 4b8j_A 228 SNFCRGKPQPSFEQTRPALPALARLI-HSNDEEVLTDACWA--LSYLSDGTNDKIQAVIEAGVCPRLVELLLHP------ 298 (528)
T ss_dssp HHHHCSSSCCCHHHHTTHHHHHHHHT-TCCCHHHHHHHHHH--HHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS------
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHH-CCCCHHHHHHHHHH--HHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC------
Confidence 77776642 2344455544 45667666665554 45566666554433 33333211
Q ss_pred ccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcc---cccccHHHHHHHHh
Q psy6263 609 SAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEE---IGSEMSTRIFGQLG 685 (913)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~---ig~em~~r~~~~Ll 685 (913)
++.+ +..|..+||-......+. +-..-+...+-.++
T Consensus 299 ----------------------------------------~~~v-~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL 337 (528)
T 4b8j_A 299 ----------------------------------------SPSV-LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL 337 (528)
T ss_dssp ----------------------------------------CHHH-HHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHH
T ss_pred ----------------------------------------ChhH-HHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHH
Confidence 1333 555555665443321110 00112345566667
Q ss_pred ccC-ChhHHhHhHHHHHHhhcCCCch-------hHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHH-----HHH
Q psy6263 686 RYG-EPTVRRAVPLAIALCSMSNPAL-------NVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLAT-----MLR 752 (913)
Q Consensus 686 ~~~-~~~vR~~a~LALgL~~as~~~~-------~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~-----~Lr 752 (913)
+.. ++.+|..++.+|+-++++++.. .++..|.++..+.+..|+..|+.+++-+..+.+...... .+.
T Consensus 338 ~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~ 417 (528)
T 4b8j_A 338 TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIK 417 (528)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHH
T ss_pred cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 777 9999999999999999876532 455667777667799999999999998887633221111 122
Q ss_pred HHHHH-hcCChhHHHHHHHHHHHh
Q psy6263 753 QLAQY-HVKNTGHLFMVRIAQGLT 775 (913)
Q Consensus 753 ~L~~~-~~~d~~~~f~~~iAqGLl 775 (913)
.|... ...|+..+..+.-+++-+
T Consensus 418 ~L~~lL~~~d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 418 PLCDLLICPDIRIVTVCLEGLENI 441 (528)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH
Confidence 22222 245666655554454444
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.86 E-value=0.0018 Score=72.54 Aligned_cols=280 Identities=10% Similarity=0.018 Sum_probs=166.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH---------HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCC--
Q psy6263 445 LALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ---------EVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGY-- 513 (913)
Q Consensus 445 l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e---------~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n-- 513 (913)
+..|...+.+.++.++..|+-.|+-+.....+. .+...|...+.++. +.++...|+-+|+-+.-++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHH
Confidence 445566677888889999999998654322221 45666666666542 345666788888876655321
Q ss_pred -----HHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCc---------ccHHHHHHHHhcCCChhhhhHHHHHH
Q psy6263 514 -----HEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKK---------DAIDTTLAALEVLPDPFRSMAKMMLK 579 (913)
Q Consensus 514 -----~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~---------e~~~~ll~~L~~~~~pi~r~~~~~~l 579 (913)
..++..+++.+.+. +..+...++-+|+-+..... ..++.+++.+...+++-.|..++.++
T Consensus 101 ~~~~~~~~i~~L~~lL~~~------~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L 174 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSE------FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWAL 174 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHcCC------CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 12444555555431 21455556666776665432 34566677666556777787777776
Q ss_pred HHHHhccCC-------HHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhh
Q psy6263 580 MCAYAGSGD-------VLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDL 652 (913)
Q Consensus 580 glAyaGTGn-------~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 652 (913)
+-...+.+. ...+..|++++.+. ++.+
T Consensus 175 ~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~----------------------------------------------~~~v 208 (450)
T 2jdq_A 175 SNLCRGKSPPPEFAKVSPCLNVLSWLLFVS----------------------------------------------DTDV 208 (450)
T ss_dssp HHHHCCSSSCCCGGGTGGGHHHHHHHTTCC----------------------------------------------CHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHccC----------------------------------------------CHHH
Confidence 643333211 23455555555311 1233
Q ss_pred hhHHHHHHHHHHHhhcCcc---cccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccC
Q psy6263 653 SSMQAVAALGVAVVALGEE---IGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHD 722 (913)
Q Consensus 653 ~~~~a~~~Lgiali~~ge~---ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D 722 (913)
+..+..+|+-..-...+. +...-+...+-.++++.++.+|..++-+|+-++.+++. ..++..|.++.++
T Consensus 209 -~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 209 -LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp -HHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC
Confidence 444444444332111000 00111334455566788999999999999999877653 2588889999888
Q ss_pred ccHHHHHHHHHHHHHhhCCCChhH--HH--HHHHHHHHH-hcCChhHHHHHHHHHHHhhcC
Q psy6263 723 LDEEVAHNAIFSMGLVGAGTNNAR--LA--TMLRQLAQY-HVKNTGHLFMVRIAQGLTHMG 778 (913)
Q Consensus 723 ~d~~Vr~~AiiALGlV~aGtnn~r--i~--~~Lr~L~~~-~~~d~~~~f~~~iAqGLl~~G 778 (913)
++..||..|+.++|-+..|+.... +. .++..|... .+.++..+..+..++|-+..+
T Consensus 288 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 288 PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999998764311 10 122222221 246788888888787776654
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.85 E-value=0.00054 Score=79.61 Aligned_cols=308 Identities=15% Similarity=0.117 Sum_probs=179.1
Q ss_pred cccccccccCchhhHHHHHHHHHHHHhcCCCCCc------hhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCC----
Q psy6263 408 LTPIDKYLYTSEDYIKAGALLALGIVNCGVRNEC------DPALALLSDYVLND-SITLRIGAVLGLGLAYAGTKR---- 476 (913)
Q Consensus 408 l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~------d~~l~lL~~~L~~~-~~~v~~gA~LGLGlay~Gs~~---- 476 (913)
+..|-..|.++++..+..|+.+++-+.....++. ..++..|...|.+. ++.++..|+-+|+-+..++..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4444455666677788888888886644321110 12456677777776 788999999999987666432
Q ss_pred ---HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHcCCcCcccccchhhHHHHHHH
Q psy6263 477 ---QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGY-------HEVASAILQTLIELPVSELQDGHYSRFLPLALA 546 (913)
Q Consensus 477 ---e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n-------~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLg 546 (913)
..+...|...+.++ +.++...|+.+||-+.-.+.. ..++..+++.+.+ . +..+.+.++-+|+
T Consensus 169 ~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-----~-~~~v~~~a~~~L~ 240 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-----N-KPSLIRTATWTLS 240 (530)
T ss_dssp HHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-----C-CHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-----C-CHHHHHHHHHHHH
Confidence 12345566666543 345666888899876543210 0133445554443 1 2256677777777
Q ss_pred HHhcCC-c--------ccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHH---------HHhhhhccCCCCCc
Q psy6263 547 ITYLGK-K--------DAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQE---------FLHVCSEHYTPTTS 608 (913)
Q Consensus 547 Ll~~G~-~--------e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~---------LLh~~~~~~~~~~~ 608 (913)
-+..+. . ..++.+++.+. ++++-.+..++.+++ +...++...++. |+.++.+.
T Consensus 241 ~L~~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~--~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~------ 311 (530)
T 1wa5_B 241 NLCRGKKPQPDWSVVSQALPTLAKLIY-SMDTETLVDACWAIS--YLSDGPQEAIQAVIDVRIPKRLVELLSHE------ 311 (530)
T ss_dssp HHHCCSSSCCCHHHHGGGHHHHHHHTT-CCCHHHHHHHHHHHH--HHHSSCHHHHHHHHHTTCHHHHHHGGGCS------
T ss_pred HHhCCCCCCCcHHHHHhHHHHHHHHHc-CCCHHHHHHHHHHHH--HHhCCCHHHHHHHHhcCcHHHHHHHHCCC------
Confidence 776654 2 24555665544 556777766666544 444554433333 33333210
Q ss_pred ccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccc-----cccHHHHHHH
Q psy6263 609 SAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIG-----SEMSTRIFGQ 683 (913)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig-----~em~~r~~~~ 683 (913)
++.+ +..+..+||-.. .+.+-. ..-+...+-.
T Consensus 312 ----------------------------------------~~~v-~~~a~~~L~~l~--~~~~~~~~~~~~~~~l~~L~~ 348 (530)
T 1wa5_B 312 ----------------------------------------STLV-QTPALRAVGNIV--TGNDLQTQVVINAGVLPALRL 348 (530)
T ss_dssp ----------------------------------------CHHH-HHHHHHHHHHHT--TSCHHHHHHHHHTTHHHHHHH
T ss_pred ----------------------------------------Chhh-HHHHHHHHHHHH--cCCHHHHHHHHHcchHHHHHH
Confidence 1333 555555555443 222110 1123455666
Q ss_pred HhccCChhHHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCCh--hHHHH-----
Q psy6263 684 LGRYGEPTVRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNN--ARLAT----- 749 (913)
Q Consensus 684 Ll~~~~~~vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn--~ri~~----- 749 (913)
++++.++.+|..++.+|+-++.+++. ..++..|.++..+.+..|+..|+.+++-+..+.+. ..+..
T Consensus 349 lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 428 (530)
T 1wa5_B 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428 (530)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence 77888999999999999999987654 24566777777788999999999999988765321 11111
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHHHHh
Q psy6263 750 MLRQLAQY-HVKNTGHLFMVRIAQGLT 775 (913)
Q Consensus 750 ~Lr~L~~~-~~~d~~~~f~~~iAqGLl 775 (913)
.+..|... .+.|+..+..+.-|++-+
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENI 455 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 12222222 245777666555555433
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.80 E-value=0.00085 Score=77.93 Aligned_cols=295 Identities=13% Similarity=0.117 Sum_probs=176.3
Q ss_pred hhHHHHHHhhhhhcccC---------CCccccccccccCc-hhhHHHHHHHHHHHHhcCCCCCc-----hhHHHHHHHhh
Q psy6263 388 GMLSAAASLGLIYLWDV---------DGGLTPIDKYLYTS-EDYIKAGALLALGIVNCGVRNEC-----DPALALLSDYV 452 (913)
Q Consensus 388 ~k~sA~aslGlI~~~~~---------~~~l~~l~~yL~s~-~~~~k~GAllaLGLi~aG~~~e~-----d~~l~lL~~~L 452 (913)
.+..|+..++-+..... ..++..|-++|.++ ++.++..|+.+|+-+..+..... ..++..|...+
T Consensus 103 ~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL 182 (530)
T 1wa5_B 103 EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL 182 (530)
T ss_dssp HHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHH
Confidence 45566666665533221 23555666677665 78899999999998876532110 12355666777
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCC-------HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcC-C--CH----HHHH
Q psy6263 453 LNDSITLRIGAVLGLGLAYAGTKR-------QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGT-G--YH----EVAS 518 (913)
Q Consensus 453 ~~~~~~v~~gA~LGLGlay~Gs~~-------e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs-~--n~----~v~~ 518 (913)
.+.+..++..|+-+||-+...+.. ..+...|...+.+. +.++...|+.+|+-+.-+. . .. .++.
T Consensus 183 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 260 (530)
T 1wa5_B 183 YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP 260 (530)
T ss_dssp HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHH
Confidence 778889999999999987644311 12455666777653 3456668888998777654 1 11 3344
Q ss_pred HHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcc---------cHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCH
Q psy6263 519 AILQTLIELPVSELQDGHYSRFLPLALAITYLGKKD---------AIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDV 589 (913)
Q Consensus 519 ~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e---------~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~ 589 (913)
.+++.+.. . ++.+...++-+|+-+..+..+ .++.+++.+. ++++-.|..++.+++ ...+|+.
T Consensus 261 ~L~~lL~~-----~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~-~~~~~v~~~a~~~L~--~l~~~~~ 331 (530)
T 1wa5_B 261 TLAKLIYS-----M-DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTLVQTPALRAVG--NIVTGND 331 (530)
T ss_dssp HHHHHTTC-----C-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHH--HHTTSCH
T ss_pred HHHHHHcC-----C-CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC-CCChhhHHHHHHHHH--HHHcCCH
Confidence 55555432 1 224555666667777666543 3344555444 556766776665554 4455554
Q ss_pred HHHH---------HHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHH
Q psy6263 590 LVVQ---------EFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAA 660 (913)
Q Consensus 590 ~~Iq---------~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~ 660 (913)
...+ .|+.++.+. +..+ +..|..+
T Consensus 332 ~~~~~~~~~~~l~~L~~lL~~~----------------------------------------------~~~v-r~~A~~a 364 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLLSSP----------------------------------------------KENI-KKEACWT 364 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS----------------------------------------------CHHH-HHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHHcCC----------------------------------------------CHHH-HHHHHHH
Confidence 4333 333333211 1334 5556666
Q ss_pred HHHHHhhcCcccc---cccHHHHHHHHhccCChhHHhHhHHHHHHhhcC-CC--c-------hhHHHHHHhhccCccHHH
Q psy6263 661 LGVAVVALGEEIG---SEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMS-NP--A-------LNVIDVLNKYSHDLDEEV 727 (913)
Q Consensus 661 Lgiali~~ge~ig---~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as-~~--~-------~~vid~L~~~s~D~d~~V 727 (913)
|+-......+.+. ..-+...+-.+++..++.+|..++.||+-++.+ ++ . ..++..|..+..+.+..|
T Consensus 365 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 444 (530)
T 1wa5_B 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 6654322111110 011233455566789999999999999988753 44 1 247778888888889999
Q ss_pred HHHHHHHHHHhhC
Q psy6263 728 AHNAIFSMGLVGA 740 (913)
Q Consensus 728 r~~AiiALGlV~a 740 (913)
+..|+-+++-+.-
T Consensus 445 ~~~al~aL~~l~~ 457 (530)
T 1wa5_B 445 IEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888876653
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.75 E-value=0.0016 Score=75.33 Aligned_cols=298 Identities=14% Similarity=0.097 Sum_probs=176.2
Q ss_pred hhhHHHHHHhhhhhcccCC---------CccccccccccCch-hhHHHHHHHHHHHHhcCCCCCc-----hhHHHHHHHh
Q psy6263 387 HGMLSAAASLGLIYLWDVD---------GGLTPIDKYLYTSE-DYIKAGALLALGIVNCGVRNEC-----DPALALLSDY 451 (913)
Q Consensus 387 ~~k~sA~aslGlI~~~~~~---------~~l~~l~~yL~s~~-~~~k~GAllaLGLi~aG~~~e~-----d~~l~lL~~~ 451 (913)
..+..|+..++-+..++.+ +++..|-+.|.+++ +.++..|+.+|+-+..+..... ..++..|...
T Consensus 89 ~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 168 (528)
T 4b8j_A 89 NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168 (528)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHH
Confidence 3456666666655444331 34555556666665 8899999999999876532111 1256677888
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCC--H-----HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCC--H----HHHH
Q psy6263 452 VLNDSITLRIGAVLGLGLAYAGTKR--Q-----EVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGY--H----EVAS 518 (913)
Q Consensus 452 L~~~~~~v~~gA~LGLGlay~Gs~~--e-----~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n--~----~v~~ 518 (913)
+.+.+..++..|+-+||-+...+.. . .+...|+..+.++ .+.++...|+.+|+-+.-+..+ . .++.
T Consensus 169 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~ 247 (528)
T 4b8j_A 169 LGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALP 247 (528)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 8888899999999999987543221 1 1344555566332 2345667888899877766422 1 2344
Q ss_pred HHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCccc---------HHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCH
Q psy6263 519 AILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDA---------IDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDV 589 (913)
Q Consensus 519 ~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~---------~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~ 589 (913)
.+++.+.. . +..+...++.+|+-+..+..+. ++.+++.|. .+++-.+..++.+++ ...+|+.
T Consensus 248 ~L~~lL~~-----~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~--nl~~~~~ 318 (528)
T 4b8j_A 248 ALARLIHS-----N-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL-HPSPSVLIPALRTVG--NIVTGDD 318 (528)
T ss_dssp HHHHHTTC-----C-CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT-CSCHHHHHHHHHHHH--HHTTSCH
T ss_pred HHHHHHCC-----C-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc-CCChhHHHHHHHHHH--HHHcCCH
Confidence 55554432 1 2245556666677666555443 334444444 445666666555544 3444554
Q ss_pred HHH---------HHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHH
Q psy6263 590 LVV---------QEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAA 660 (913)
Q Consensus 590 ~~I---------q~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~ 660 (913)
... ..|++++.+.. ++.+ +..|..+
T Consensus 319 ~~~~~~~~~~~l~~L~~lL~~~~---------------------------------------------~~~v-~~~A~~~ 352 (528)
T 4b8j_A 319 AQTQCIIDHQALPCLLSLLTQNL---------------------------------------------KKSI-KKEACWT 352 (528)
T ss_dssp HHHHHHHTTTHHHHHHHHHHSCC---------------------------------------------CHHH-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHcCCC---------------------------------------------cHHH-HHHHHHH
Confidence 333 33444443210 1334 5555555
Q ss_pred HHHHHhhcCccc---ccccHHHHHHHHhccCChhHHhHhHHHHHHhhcC-CCc-------hhHHHHHHhhccCccHHHHH
Q psy6263 661 LGVAVVALGEEI---GSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMS-NPA-------LNVIDVLNKYSHDLDEEVAH 729 (913)
Q Consensus 661 Lgiali~~ge~i---g~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as-~~~-------~~vid~L~~~s~D~d~~Vr~ 729 (913)
|+-......+.+ -..-+...+-.+++.+++.+|..++.||+-++.+ ++. ..++..|..+..+.+..|+.
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~ 432 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVT 432 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 554433221110 0011233455566778999999999999988754 432 25677888888889999999
Q ss_pred HHHHHHHHhhC
Q psy6263 730 NAIFSMGLVGA 740 (913)
Q Consensus 730 ~AiiALGlV~a 740 (913)
.|+-+++-+..
T Consensus 433 ~al~~L~~l~~ 443 (528)
T 4b8j_A 433 VCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887753
No 17
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.67 E-value=0.0042 Score=73.59 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=80.5
Q ss_pred chhhHHHHHHhhhhhcccCCCc-cccccccccCchhhHHHHHHHHHHHHhcCCCCCch--hHHHHHHHhhcCCCHHHHHH
Q psy6263 386 QHGMLSAAASLGLIYLWDVDGG-LTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECD--PALALLSDYVLNDSITLRIG 462 (913)
Q Consensus 386 ~~~k~sA~aslGlI~~~~~~~~-l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d--~~l~lL~~~L~~~~~~v~~g 462 (913)
...+..|.-++|-+..-+.-+. ...+.+.+.+++++++-.|+.+++-++.....-.+ ..+..|...|.++++.++.+
T Consensus 100 ~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~ 179 (591)
T 2vgl_B 100 PLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVAN 179 (591)
T ss_dssp HHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHH
Confidence 3445666666666642221111 11134455677899999999999988764332222 36678888888888899999
Q ss_pred HHHHHHHHhccCCC-------HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q psy6263 463 AVLGLGLAYAGTKR-------QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIE 526 (913)
Q Consensus 463 A~LGLGlay~Gs~~-------e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~ 526 (913)
|+.+|+-+.-.... ..++..|+..+.+.+ ++.....+- -+..++..+.+..+.+++.+..
T Consensus 180 A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~---~~~q~~il~-~l~~l~~~~~~~~~~~l~~l~~ 246 (591)
T 2vgl_B 180 AVAALSEISESHPNSNLLDLNPQNINKLLTALNECT---EWGQIFILD-CLSNYNPKDDREAQSICERVTP 246 (591)
T ss_dssp HHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC---HHHHHHHHH-HHHTSCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC---chHHHHHHH-HHHHhCCCChHHHHHHHHHHHH
Confidence 99999886543321 144556666665433 232222222 1224455555566677777765
No 18
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.63 E-value=0.012 Score=72.37 Aligned_cols=331 Identities=12% Similarity=0.053 Sum_probs=179.5
Q ss_pred CchhhHHHHHHHHHHHHhcCC---CCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH-------HHHHHHHHh
Q psy6263 417 TSEDYIKAGALLALGIVNCGV---RNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ-------EVVTLLLPV 486 (913)
Q Consensus 417 s~~~~~k~GAllaLGLi~aG~---~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e-------~v~e~L~~~ 486 (913)
+.++.++..+..+++.+.... .| .+.+..|...+.+.+..++.+++..||-+.-..... ...+.+.+.
T Consensus 101 ~~~~~vr~~~a~~i~~ia~~~~~~~w--p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~ 178 (852)
T 4fdd_A 101 DSSPLIRATVGILITTIASKGELQNW--PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPK 178 (852)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTTTTC--TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcccc--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHH
Confidence 445678888888888875421 23 357788888888888899999999999876443322 013334443
Q ss_pred h----cCCCCcHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcc-
Q psy6263 487 L----TDRKSTPEVVAFAAVAASLIYVGTGYH-------EVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKD- 554 (913)
Q Consensus 487 L----~d~~~~~ev~~~A~laLGLi~lGs~n~-------~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e- 554 (913)
+ .++ +.+++..|.-+++-+.-+ ... +++..+++.+.+ . ++.+++.++-+++-+.-...+
T Consensus 179 l~~~l~~~--~~~vR~~A~~aL~~~~~~-~~~~~~~~~~~~l~~l~~~~~d-----~-~~~vr~~a~~~L~~l~~~~~~~ 249 (852)
T 4fdd_A 179 FLQFFKHS--SPKIRSHAVACVNQFIIS-RTQALMLHIDSFIENLFALAGD-----E-EPEVRKNVCRALVMLLEVRMDR 249 (852)
T ss_dssp HTTTTTCS--SHHHHHHHHHHHHTTTTT-TCHHHHTSHHHHHHHHHHHHTC-----C-CHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHcCC-----C-CHHHHHHHHHHHHHHHHhCHHH
Confidence 3 333 345666666677643322 222 333444443332 1 225666666666655433332
Q ss_pred -------cHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCH-----HHHHHHHhhhhccCCCCCccccccccccccccc
Q psy6263 555 -------AIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDV-----LVVQEFLHVCSEHYTPTTSSAKEETSATGTAAS 622 (913)
Q Consensus 555 -------~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~-----~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (913)
..+.++..+ .++++-.|..++-.+.- .+..... ..+..++..+.+.... .+++..
T Consensus 250 ~~~~l~~l~~~l~~~~-~~~~~~vr~~a~e~l~~-l~~~~~~~~~~~~~~~~l~p~ll~~l~~--~e~d~~--------- 316 (852)
T 4fdd_A 250 LLPHMHNIVEYMLQRT-QDQDENVALEACEFWLT-LAEQPICKDVLVRHLPKLIPVLVNGMKY--SDIDII--------- 316 (852)
T ss_dssp HGGGHHHHHHHHHHHH-TCSSHHHHHHHHHHHHH-HTTSTTHHHHHTTTHHHHHHHHHHHTSC--CHHHHH---------
T ss_pred HHHHHHHHHHHHHHHc-cCCcHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHHHHHcCC--cHhHHH---------
Confidence 222333333 35566666665433221 2211110 0122333222211100 000000
Q ss_pred ccCCCCCCCCchhhhchhhhhhhhh----hhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHH
Q psy6263 623 ATAGGSTESTPAAAANDKKEKKDKE----KEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPL 698 (913)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~L 698 (913)
+.+...+++..+ .+..+ |+.+..+++...-..|+++-+ .+...+..++++.++.+|.+++.
T Consensus 317 -------------~~~~d~~ed~~~dd~~~~~~v-r~~a~~~L~~la~~~~~~~~~-~l~~~l~~~l~~~~~~~R~aa~~ 381 (852)
T 4fdd_A 317 -------------LLKGDVEGGSGGDDTISDWNL-RKCSAAALDVLANVYRDELLP-HILPLLKELLFHHEWVVKESGIL 381 (852)
T ss_dssp -------------HHHC------------CCCCH-HHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHTCSSHHHHHHHHH
T ss_pred -------------HhcCCcccccccccccccchH-HHHHHHHHHHHHHhccHHHHH-HHHHHHHHHhcCCCHHHHHHHHH
Confidence 000000000000 01223 666766777665555654422 34455666677889999999999
Q ss_pred HHHHhhcCCCc------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCC----hhHHHHHHHHHHHHh-cCChhHHHH
Q psy6263 699 AIALCSMSNPA------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTN----NARLATMLRQLAQYH-VKNTGHLFM 767 (913)
Q Consensus 699 ALgL~~as~~~------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtn----n~ri~~~Lr~L~~~~-~~d~~~~f~ 767 (913)
|+|-+..+.+. ..++..|.+..+|++..||..|..++|-+..... ..-+..++..|.+.. ..++.++-.
T Consensus 382 alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 382 VLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 461 (852)
T ss_dssp HHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999876543 3688888888999999999999999997765321 122334444444333 457788888
Q ss_pred HHHHHHHhhcCCCceecccc
Q psy6263 768 VRIAQGLTHMGKGTVSLSPF 787 (913)
Q Consensus 768 ~~iAqGLl~~Gkg~~tLsp~ 787 (913)
+.-|++-+.-+.|.. +.|+
T Consensus 462 a~~aL~~l~~~~~~~-l~~~ 480 (852)
T 4fdd_A 462 ACSAFATLEEEACTE-LVPY 480 (852)
T ss_dssp HHHHHHHHHHHHGGG-GGGG
T ss_pred HHHHHHHHHHHhhHh-hHhH
Confidence 888877665444432 5553
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.55 E-value=0.0068 Score=71.83 Aligned_cols=93 Identities=19% Similarity=0.137 Sum_probs=52.8
Q ss_pred ccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH----HHHHHHHHh
Q psy6263 411 IDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ----EVVTLLLPV 486 (913)
Q Consensus 411 l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e----~v~e~L~~~ 486 (913)
+.+-|.++++++++.|+-++|-+.. ..=...+...+...+.++++.+|..|+++++-+|-...+. ++.+.|...
T Consensus 91 l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~l 168 (591)
T 2vgl_B 91 FVKDCEDPNPLIRALAVRTMGCIRV--DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDL 168 (591)
T ss_dssp HGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHH
Confidence 3444556677777777777765531 1101222333555566677777777777777776543331 355666666
Q ss_pred hcCCCCcHHHHHHHHHHHHHH
Q psy6263 487 LTDRKSTPEVVAFAAVAASLI 507 (913)
Q Consensus 487 L~d~~~~~ev~~~A~laLGLi 507 (913)
+.|+ +..|...|+-+|+-+
T Consensus 169 L~d~--d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 169 IADS--NPMVVANAVAALSEI 187 (591)
T ss_dssp TSCS--CHHHHHHHHHHHHHH
T ss_pred hCCC--ChhHHHHHHHHHHHH
Confidence 6543 245666666676653
No 20
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.54 E-value=0.0035 Score=74.84 Aligned_cols=98 Identities=12% Similarity=0.081 Sum_probs=66.8
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCch--hHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL--NVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQL 754 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~--~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L 754 (913)
+...+..++...++++|+.+..+|+.+....|.. .....+....+|.|..||..|+=.|.-+.--+ | +..+++.|
T Consensus 314 a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~-n--v~~iv~eL 390 (618)
T 1w63_A 314 AINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN-N--IRGMMKEL 390 (618)
T ss_dssp HHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS-S--THHHHHHH
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccc-c--HHHHHHHH
Confidence 5556667778889999999999999887655542 33445555667889999998888777766433 3 23344555
Q ss_pred HHHh-cCChhHHHHHHHHHHHhhc
Q psy6263 755 AQYH-VKNTGHLFMVRIAQGLTHM 777 (913)
Q Consensus 755 ~~~~-~~d~~~~f~~~iAqGLl~~ 777 (913)
..|- ..|+..+-.+.-+.|-+..
T Consensus 391 ~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 391 LYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5543 4567777777777777654
No 21
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.48 E-value=0.008 Score=73.72 Aligned_cols=281 Identities=11% Similarity=0.017 Sum_probs=157.9
Q ss_pred ccccccccccCchhhHHHHHHHHHHHHhcCCCC-----CchhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCC----
Q psy6263 407 GLTPIDKYLYTSEDYIKAGALLALGIVNCGVRN-----ECDPALALLSDYVLND-SITLRIGAVLGLGLAYAGTKR---- 476 (913)
Q Consensus 407 ~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~-----e~d~~l~lL~~~L~~~-~~~v~~gA~LGLGlay~Gs~~---- 476 (913)
++..|-+.|.+++..++.-|+.+|+.+.....+ +...++..|...|.+. +..++..|+-+|.-......+
T Consensus 151 ~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i 230 (780)
T 2z6g_A 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAI 230 (780)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHH
Confidence 344455566677889999999999988642110 0124566666667644 677888888787764332211
Q ss_pred --HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHcCCcCcccccchhhHHHHHHHH
Q psy6263 477 --QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYH-------EVASAILQTLIELPVSELQDGHYSRFLPLALAI 547 (913)
Q Consensus 477 --e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~-------~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgL 547 (913)
..++..|...+.+++ .++...|+.+|+-+..++.+. .++..+++.+.+. +.++.+.++-++..
T Consensus 231 ~~~g~I~~Lv~lL~~~~--~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~------~~~v~~~a~~aL~~ 302 (780)
T 2z6g_A 231 FKSGGIPALVNMLGSPV--DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT------NVKFLAITTDCLQI 302 (780)
T ss_dssp HHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC------CHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC------CHHHHHHHHHHHHH
Confidence 124556677776543 446668888998887765432 2344555555431 11344444445555
Q ss_pred HhcCC---------cccHHHHHHHHhcCCChhhhhHHHHHHH-HHHhccCCHH------HHHHHHhhhhccCCCCCcccc
Q psy6263 548 TYLGK---------KDAIDTTLAALEVLPDPFRSMAKMMLKM-CAYAGSGDVL------VVQEFLHVCSEHYTPTTSSAK 611 (913)
Q Consensus 548 l~~G~---------~e~~~~ll~~L~~~~~pi~r~~~~~~lg-lAyaGTGn~~------~Iq~LLh~~~~~~~~~~~~~~ 611 (913)
+..+. .+.++.+++.+........+..++.++. ++. ...+.. ++..|+.++.+.
T Consensus 303 La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~--------- 372 (780)
T 2z6g_A 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDP--------- 372 (780)
T ss_dssp HHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCS---------
T ss_pred HhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCC---------
Confidence 55443 2345666766665443333322222222 221 111211 234444444211
Q ss_pred cccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChh
Q psy6263 612 EETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPT 691 (913)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~ 691 (913)
+.++ ++.+..+|+-..-......+.+.+...+-.+++..++.
T Consensus 373 -------------------------------------~~~~-~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~ 414 (780)
T 2z6g_A 373 -------------------------------------SQRL-VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN 414 (780)
T ss_dssp -------------------------------------CHHH-HHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHH
T ss_pred -------------------------------------chHH-HHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHH
Confidence 1223 44444444433222222222344666677778889999
Q ss_pred HHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccC-cc-HHHHHHHHHHHHHhhCCCC
Q psy6263 692 VRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHD-LD-EEVAHNAIFSMGLVGAGTN 743 (913)
Q Consensus 692 vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D-~d-~~Vr~~AiiALGlV~aGtn 743 (913)
+|..++.+|+-++.+++. ..++..|.++..+ .+ ..|+..|+.+||-+..+..
T Consensus 415 vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 415 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 999999999998876542 2466677666543 33 4899999999999876543
No 22
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.48 E-value=0.0055 Score=73.15 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=65.8
Q ss_pred cccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC--HHHHHHHHHhh
Q psy6263 410 PIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR--QEVVTLLLPVL 487 (913)
Q Consensus 410 ~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~--e~v~e~L~~~L 487 (913)
.|.+-|.++++++++-|+-++|-+... .=.+++...+...+.++++.+|-.|+++++-+|-+..+ +.+.+.|.+.+
T Consensus 111 ~l~kDL~~~n~~vr~lAL~~L~~i~~~--~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL 188 (618)
T 1w63_A 111 CIKNDLNHSTQFVQGLALCTLGCMGSS--EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLL 188 (618)
T ss_dssp HHHHHHSCSSSHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTST
T ss_pred HHHHhcCCCCHhHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHh
Confidence 344556678999999999999998521 11233456677778899999999999999999876432 12333334444
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCHH
Q psy6263 488 TDRKSTPEVVAFAAVAASLIYVGTGYHE 515 (913)
Q Consensus 488 ~d~~~~~ev~~~A~laLGLi~lGs~n~~ 515 (913)
.|+ +..|..+|..+|+- ++..+.+
T Consensus 189 ~D~--d~~V~~~Al~~L~~--i~~~~~~ 212 (618)
T 1w63_A 189 NEK--NHGVLHTSVVLLTE--MCERSPD 212 (618)
T ss_dssp TCC--CHHHHHHHHHHHHH--HCCSHHH
T ss_pred CCC--CHhHHHHHHHHHHH--HHHhChH
Confidence 443 34466667777774 4555443
No 23
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.47 E-value=0.015 Score=71.52 Aligned_cols=354 Identities=16% Similarity=0.121 Sum_probs=185.9
Q ss_pred chh-hHHHHHHhhhhhcccCCC----ccccccccccCchhhHHHHHHHHHHHHhcCCCCC----chhHHHHHHHhhcCCC
Q psy6263 386 QHG-MLSAAASLGLIYLWDVDG----GLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNE----CDPALALLSDYVLNDS 456 (913)
Q Consensus 386 ~~~-k~sA~aslGlI~~~~~~~----~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e----~d~~l~lL~~~L~~~~ 456 (913)
+|. +..|..++|.+.....+. .+..+.+++.+++...|.+|+.++|-+..|.... .+.++..|...+.+++
T Consensus 334 ~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~ 413 (852)
T 4fdd_A 334 DWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK 413 (852)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSS
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCC
Confidence 443 345555666544322222 2334445556778999999999999997665322 1346666777788889
Q ss_pred HHHHHHHHHHHHHHhccC--C-----CHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHH
Q psy6263 457 ITLRIGAVLGLGLAYAGT--K-----RQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGY------HEVASAILQT 523 (913)
Q Consensus 457 ~~v~~gA~LGLGlay~Gs--~-----~e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n------~~v~~~lL~~ 523 (913)
+.+|..|+.+||-..-.. . ..+++..|...+.|++ .++...|+.+|+-+.-+.+. ..++..++..
T Consensus 414 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~--~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~ 491 (852)
T 4fdd_A 414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN--KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA 491 (852)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHH
Confidence 999999999999654321 1 1355566666665543 45677888888876543332 2444555555
Q ss_pred HHcCCcCcccccchhhHHHHHHHHHh--cC----CcccHHHHHHHHh----c--CCChhhh-hHHHHHHHHHHhccCCH-
Q psy6263 524 LIELPVSELQDGHYSRFLPLALAITY--LG----KKDAIDTTLAALE----V--LPDPFRS-MAKMMLKMCAYAGSGDV- 589 (913)
Q Consensus 524 l~~~~~~~~~~e~i~r~~~lgLgLl~--~G----~~e~~~~ll~~L~----~--~~~pi~r-~~~~~~lglAyaGTGn~- 589 (913)
+.. .++ +..+.+.-+++-+. .| +.+-.+.++..+. . ..++-.+ ...++...+.-.|.+-.
T Consensus 492 l~~-----~~~-~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~ 565 (852)
T 4fdd_A 492 FSK-----YQH-KNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLP 565 (852)
T ss_dssp HHH-----CCH-HHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHH-----hCh-HHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHH
Confidence 543 222 33333333444433 12 2223334443332 1 2333322 11222222222343322
Q ss_pred ---HHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhh-hhhhhhhhhHHHHHHHHHHH
Q psy6263 590 ---LVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKD-KEKEKDLSSMQAVAALGVAV 665 (913)
Q Consensus 590 ---~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dv~~~~a~~~Lgial 665 (913)
..+..+++.+.+.... ......+.+. .+.+.++ +..+.-++|...
T Consensus 566 ~~~~i~~~~~~~l~~~l~~------------------------------~~~~~~~~~~~~~~d~~~-~~~~l~~l~~l~ 614 (852)
T 4fdd_A 566 YCEPVYQRCVNLVQKTLAQ------------------------------AMLNNAQPDQYEAPDKDF-MIVALDLLSGLA 614 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------------------------HHHHHHCTTTSCCCCTHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------------------------------HHHhhcCCcccCCCcchH-HHHHHHHHHHHH
Confidence 2223333333211000 0000000000 0001233 444556667666
Q ss_pred hhcCccccc----ccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc------hhHHHHHHhhccCccHHHHHHHHHHH
Q psy6263 666 VALGEEIGS----EMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA------LNVIDVLNKYSHDLDEEVAHNAIFSM 735 (913)
Q Consensus 666 i~~ge~ig~----em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~------~~vid~L~~~s~D~d~~Vr~~AiiAL 735 (913)
-..|+++.+ +.....+-+.+++.++.||..+..++|-++.+.+. ..++..|.+...+.+..||.+|+.++
T Consensus 615 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~al 694 (852)
T 4fdd_A 615 EGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAI 694 (852)
T ss_dssp HHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHH
Confidence 666665432 23455566666777899999998888877643322 25666677766667889999999999
Q ss_pred HHhhCCCC---hhHHHHHHHHHHHHhc-CC--hhHHHHHHHHHHHhhcC
Q psy6263 736 GLVGAGTN---NARLATMLRQLAQYHV-KN--TGHLFMVRIAQGLTHMG 778 (913)
Q Consensus 736 GlV~aGtn---n~ri~~~Lr~L~~~~~-~d--~~~~f~~~iAqGLl~~G 778 (913)
|-+....+ .|-+..++..|..... .+ ...+=.+..++|-+...
T Consensus 695 g~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 695 GEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV 743 (852)
T ss_dssp HHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHh
Confidence 98654333 2334445555544331 11 23455566777766554
No 24
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.38 E-value=0.019 Score=58.55 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=53.9
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCC
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTN 743 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtn 743 (913)
+...+-.+++..++.+|..++.+|+-++.+++. ..++..|.++.++.+..|+..|..+|+-+.....
T Consensus 171 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 171 GVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 455566777888999999999999999886654 2578889998888999999999888887775443
No 25
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.32 E-value=0.022 Score=66.03 Aligned_cols=282 Identities=15% Similarity=0.131 Sum_probs=159.2
Q ss_pred ccccccccCchhhHHHHHHHHHHHHhcCCCCC-chh-----HHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCH----
Q psy6263 409 TPIDKYLYTSEDYIKAGALLALGIVNCGVRNE-CDP-----ALALLSDYVLN-DSITLRIGAVLGLGLAYAGTKRQ---- 477 (913)
Q Consensus 409 ~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e-~d~-----~l~lL~~~L~~-~~~~v~~gA~LGLGlay~Gs~~e---- 477 (913)
..|-+.+.+++...+.-|+-++.-+-+...+. .+. ++..|...|.+ .++.++.-|+-+|+-+..|+...
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33344556666666666666665333322221 111 24456666754 44778999999999887776432
Q ss_pred ---HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCC-HH------HHHHHHHHHHcCCcCcccccchhhHHHHHHHH
Q psy6263 478 ---EVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGY-HE------VASAILQTLIELPVSELQDGHYSRFLPLALAI 547 (913)
Q Consensus 478 ---~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n-~~------v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgL 547 (913)
.+...|...|.++ +.++...|+.+||-+-..+.. .+ ++..++..+.......... ...|.++..++-
T Consensus 140 v~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~-~~~~~a~~~L~n 216 (510)
T 3ul1_B 140 VDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC-GYLRNLTWTLSN 216 (510)
T ss_dssp HHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCH-HHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhH-HHHHHHHHHHHH
Confidence 1345566666543 345767899999976432211 11 1234454444321111111 345666666766
Q ss_pred HhcCCcc-----cHHHHH---HHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHH---------HHhhhhccCCCCCccc
Q psy6263 548 TYLGKKD-----AIDTTL---AALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQE---------FLHVCSEHYTPTTSSA 610 (913)
Q Consensus 548 l~~G~~e-----~~~~ll---~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~---------LLh~~~~~~~~~~~~~ 610 (913)
+..++.. .+..++ -.+..++++-.+..+++ +++|...++...++. |..++...
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~--aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------- 286 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW--AISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-------- 286 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHH--HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS--------
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHH--HHHHHhhchhhhHHHHHhcccchhhhhhhcCC--------
Confidence 6666532 122222 23345566666665554 456666666554433 33332210
Q ss_pred ccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCccccc-----ccHHHHHHHHh
Q psy6263 611 KEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGS-----EMSTRIFGQLG 685 (913)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~-----em~~r~~~~Ll 685 (913)
+..+ +..+..+||-. ..+.+-.. .-+...+-.|+
T Consensus 287 --------------------------------------~~~v-~~~al~aL~nl--~~~~~~~~~~i~~~g~l~~L~~LL 325 (510)
T 3ul1_B 287 --------------------------------------ELPI-VTPALRAIGNI--VTGTDEQTQKVIDAGALAVFPSLL 325 (510)
T ss_dssp --------------------------------------CHHH-HHHHHHHHHHH--TTSCHHHHHHHHHTTGGGGCC-CT
T ss_pred --------------------------------------Chhh-hhHHHHHHHHh--hcCCHHHHHHHhhccchHHHHHHh
Confidence 1233 44444455533 22321101 11233345678
Q ss_pred ccCChhHHhHhHHHHHHhhcCCCch-------hHHHHHHhhccCccHHHHHHHHHHHHHhhCCCCh
Q psy6263 686 RYGEPTVRRAVPLAIALCSMSNPAL-------NVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNN 744 (913)
Q Consensus 686 ~~~~~~vR~~a~LALgL~~as~~~~-------~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn 744 (913)
+..++.||+.++.+|+=++++++.. .++..|.++..+.+..|+..|..|++=+..+.+.
T Consensus 326 ~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~ 391 (510)
T 3ul1_B 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV 391 (510)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH
T ss_pred cCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH
Confidence 8899999999999999999887642 5677788888889999999999999977765444
No 26
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.32 E-value=0.018 Score=73.89 Aligned_cols=276 Identities=14% Similarity=0.085 Sum_probs=152.8
Q ss_pred ccccCchhhHHHHHHHHHHHHhcCCCCC-chhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH--------HHHHHH
Q psy6263 413 KYLYTSEDYIKAGALLALGIVNCGVRNE-CDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ--------EVVTLL 483 (913)
Q Consensus 413 ~yL~s~~~~~k~GAllaLGLi~aG~~~e-~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e--------~v~e~L 483 (913)
++|.+.+..+|..|+.++|-+..+...+ .+.++..|.+.+.+.++.+|.+|+.+||-+......+ ...+.+
T Consensus 55 ~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~l 134 (1230)
T 1u6g_C 55 KLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 134 (1230)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHH
Confidence 4455667889999999999886543321 2345666666777778888999999999876433322 234444
Q ss_pred HHh----hcCCCCcHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcc---
Q psy6263 484 LPV----LTDRKSTPEVVAFAAVAASLIYV--GTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKD--- 554 (913)
Q Consensus 484 ~~~----L~d~~~~~ev~~~A~laLGLi~l--Gs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e--- 554 (913)
+|. +.+ +.+.++...|.-+++-+.- |..=....+.+++.+...-. ..+..+++.+.-+++.+.-..++
T Consensus 135 lp~L~~~l~~-~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~--~~~~~vR~~a~~al~~l~~~~~~~~~ 211 (1230)
T 1u6g_C 135 TGRLTSAIAK-QEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT--SPRLAVRKRTIIALGHLVMSCGNIVF 211 (1230)
T ss_dssp HHHHHHHHSC-CSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG--CSSHHHHHHHHHHHHHHTTTC----C
T ss_pred HHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHhcCHHHH
Confidence 444 433 2234555567677776542 33211123444544443110 11213444555567666543332
Q ss_pred --cHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCC------HHHHHHHHhhhhccCCCCCcccccccccccccccccCC
Q psy6263 555 --AIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGD------VLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAG 626 (913)
Q Consensus 555 --~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn------~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (913)
..+.+++.+....++-.|.+++-+++......|. ...++.++..+.+.
T Consensus 212 ~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~------------------------ 267 (1230)
T 1u6g_C 212 VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD------------------------ 267 (1230)
T ss_dssp TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC------------------------
T ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC------------------------
Confidence 3677777777665555566666665544444443 23455555555321
Q ss_pred CCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhc--------------------
Q psy6263 627 GSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGR-------------------- 686 (913)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~-------------------- 686 (913)
++++ |..+..+++...-..|+++.+ ....++..+++
T Consensus 268 ----------------------~~~v-R~~a~~~l~~l~~~~~~~~~~-~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~ 323 (1230)
T 1u6g_C 268 ----------------------DDEL-REYCIQAFESFVRRCPKEVYP-HVSTIINICLKYLTYDPNYNYDDEDEDENAM 323 (1230)
T ss_dssp ----------------------CTTT-HHHHHHHHHHHHHCTTCCCHH-HHHHHHHHHTTCCCCC---------------
T ss_pred ----------------------CHHH-HHHHHHHHHHHHHHChHHHHH-hHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence 1233 444555555444444443311 12223333322
Q ss_pred --------------------cCChhHHhHhHHHHHHhhcCCCc------hhHHHHHHhhccCccHHHHHHHHHHHHHhh
Q psy6263 687 --------------------YGEPTVRRAVPLAIALCSMSNPA------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVG 739 (913)
Q Consensus 687 --------------------~~~~~vR~~a~LALgL~~as~~~------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~ 739 (913)
+....+|++++-+++-+....|. ..++..|.++..|.+..||..|+-+++-+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 324 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL 402 (1230)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred cccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 11245799999999988765553 144556666677899999999888777554
No 27
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.27 E-value=0.046 Score=66.48 Aligned_cols=317 Identities=12% Similarity=0.039 Sum_probs=165.0
Q ss_pred ccCchhhHHHHHHHHHHHHhcCC----CCCchhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCC---------HHHH
Q psy6263 415 LYTSEDYIKAGALLALGIVNCGV----RNECDPALALLSDYVLND-SITLRIGAVLGLGLAYAGTKR---------QEVV 480 (913)
Q Consensus 415 L~s~~~~~k~GAllaLGLi~aG~----~~e~d~~l~lL~~~L~~~-~~~v~~gA~LGLGlay~Gs~~---------e~v~ 480 (913)
|.++++.++..+..+++.+.... .| ...+..|...+.+. ++.++.+++..|+.+.-.... ..+.
T Consensus 104 l~~~~~~vr~~~~~~l~~i~~~~~p~~~w--~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll 181 (861)
T 2bpt_A 104 LVSIEPRIANAAAQLIAAIADIELPHGAW--PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181 (861)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHGGGTCC--HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHH
T ss_pred HCCCchHHHHHHHHHHHHHHHhhCccccc--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Confidence 33455777888888888775421 23 45777888888877 888999999999887642211 2345
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHH--HhcCC--CHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcc--
Q psy6263 481 TLLLPVLTDRKSTPEVVAFAAVAASLI--YVGTG--YHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKD-- 554 (913)
Q Consensus 481 e~L~~~L~d~~~~~ev~~~A~laLGLi--~lGs~--n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e-- 554 (913)
..+...+.++..+.++...|.=+++-+ +++.. .....+.+++.+.+.-. ..+..+++.+.-.++-+.-...+
T Consensus 182 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~~r~~a~~~l~~l~~~~~~~~ 259 (861)
T 2bpt_A 182 IAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ--AEDIEVQAAAFGCLCKIMSKYYTFM 259 (861)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556533455666666666653 22211 01111234444332100 11224444444445443322122
Q ss_pred --cHH-HHHHH---HhcCCChhhhhHHHHHHHHHHhc-----------------cCC------HHHHHHHHhhhhccCCC
Q psy6263 555 --AID-TTLAA---LEVLPDPFRSMAKMMLKMCAYAG-----------------SGD------VLVVQEFLHVCSEHYTP 605 (913)
Q Consensus 555 --~~~-~ll~~---L~~~~~pi~r~~~~~~lglAyaG-----------------TGn------~~~Iq~LLh~~~~~~~~ 605 (913)
... .++.. ...+.++-.|..++-.++-..-. ..+ ...+..|+..+.+..+
T Consensus 260 ~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~- 338 (861)
T 2bpt_A 260 KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNE- 338 (861)
T ss_dssp HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 112 22222 22344555555544332211100 001 1122333333321100
Q ss_pred CCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHh
Q psy6263 606 TTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLG 685 (913)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll 685 (913)
+ ++ +++..+ ++.+...|+-..-..|+++ -......+..++
T Consensus 339 ----d---------------------------------~~-d~~~~~-r~~a~~~L~~l~~~~~~~~-~~~l~~~l~~~l 378 (861)
T 2bpt_A 339 ----D---------------------------------PE-DDDWNV-SMSAGACLQLFAQNCGNHI-LEPVLEFVEQNI 378 (861)
T ss_dssp ----C----------------------------------C-CCCCHH-HHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHT
T ss_pred ----c---------------------------------cc-cccCcH-HHHHHHHHHHHHHHccHhH-HHHHHHHHHHHc
Confidence 0 00 001233 5556656665544445433 222444555666
Q ss_pred ccCChhHHhHhHHHHHHhhcCCC-c------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCC-----ChhHHHHHHHH
Q psy6263 686 RYGEPTVRRAVPLAIALCSMSNP-A------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGT-----NNARLATMLRQ 753 (913)
Q Consensus 686 ~~~~~~vR~~a~LALgL~~as~~-~------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGt-----nn~ri~~~Lr~ 753 (913)
+..++.+|.+++.++|-+..+.. . ..++..|.+...|++..||..+..++|-+.... +..-+..++..
T Consensus 379 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~ 458 (861)
T 2bpt_A 379 TADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQA 458 (861)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 77889999999999999986643 1 256777778888999999999999988665321 12234445555
Q ss_pred HHHHhcCChhHHHHHHHHHHHhh
Q psy6263 754 LAQYHVKNTGHLFMVRIAQGLTH 776 (913)
Q Consensus 754 L~~~~~~d~~~~f~~~iAqGLl~ 776 (913)
+....+.++.++..+..|++-+.
T Consensus 459 l~~~l~~~~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 459 CLIGLQDHPKVATNCSWTIINLV 481 (861)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHHHHH
Confidence 55444444666666666655443
No 28
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.17 E-value=0.062 Score=59.96 Aligned_cols=88 Identities=13% Similarity=0.064 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCC-c------hhHHHHHHhhccCccHH
Q psy6263 654 SMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNP-A------LNVIDVLNKYSHDLDEE 726 (913)
Q Consensus 654 ~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~-~------~~vid~L~~~s~D~d~~ 726 (913)
|+.+..+|+...-..|+.+ -..+...+...+++.++.+|.++..|+|-++.|.. . ..++..|.+...|++..
T Consensus 345 r~~a~~~L~~l~~~~~~~~-~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~ 423 (462)
T 1ibr_B 345 CKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423 (462)
T ss_dssp HHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHHHhccHHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 6667667776655555433 22344556667778899999999999999987643 2 47888999999999999
Q ss_pred HHHHHHHHHHHhhCCC
Q psy6263 727 VAHNAIFSMGLVGAGT 742 (913)
Q Consensus 727 Vr~~AiiALGlV~aGt 742 (913)
||..|+.++|-+....
T Consensus 424 Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 424 VRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999877543
No 29
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.13 E-value=0.042 Score=63.92 Aligned_cols=244 Identities=15% Similarity=0.153 Sum_probs=142.4
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCH-------HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHH
Q psy6263 445 LALLSDYVL-NDSITLRIGAVLGLGLAYAGTKRQ-------EVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEV 516 (913)
Q Consensus 445 l~lL~~~L~-~~~~~v~~gA~LGLGlay~Gs~~e-------~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v 516 (913)
+..|..+|. +.++.++.-|+-+|+-+..|+... .+...|...+.++ +.++...|+.+||-+-.. +.+.
T Consensus 121 ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nLa~~--~~~~ 196 (529)
T 3tpo_A 121 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGA--GSAF 196 (529)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT--CHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcc--CHHH
Confidence 344555664 345778988999999887776432 1345566655543 345666889999976432 2222
Q ss_pred ---------HHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcc-----cHHHH---HHHHhcCCChhhhhHHHHHH
Q psy6263 517 ---------ASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKD-----AIDTT---LAALEVLPDPFRSMAKMMLK 579 (913)
Q Consensus 517 ---------~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e-----~~~~l---l~~L~~~~~pi~r~~~~~~l 579 (913)
+..++..+.......... ...|.++..+.-+..++.. .+... +-.+..++++-.+..++++
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~-~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~a- 274 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLAC-GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA- 274 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCH-HHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHH-HHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHH-
Confidence 233444443211111111 3456666667666666532 22222 2234456677666665554
Q ss_pred HHHHhccCCHHHHHH---------HHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhh
Q psy6263 580 MCAYAGSGDVLVVQE---------FLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEK 650 (913)
Q Consensus 580 glAyaGTGn~~~Iq~---------LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (913)
++|...++...++. |..++.+. +.
T Consensus 275 -L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~----------------------------------------------~~ 307 (529)
T 3tpo_A 275 -ISYLTDGPNERIEMVVKKGVVPQLVKLLGAT----------------------------------------------EL 307 (529)
T ss_dssp -HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS----------------------------------------------CH
T ss_pred -HHHhhhhhhhhHHHHHhccchHHHHHHhcCC----------------------------------------------Ch
Confidence 56666666544433 22222110 12
Q ss_pred hhhhHHHHHHHHHHHhhcCccccc-----ccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCch-------hHHHHHHh
Q psy6263 651 DLSSMQAVAALGVAVVALGEEIGS-----EMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL-------NVIDVLNK 718 (913)
Q Consensus 651 dv~~~~a~~~Lgiali~~ge~ig~-----em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~-------~vid~L~~ 718 (913)
.+ +..+..+||-. ..|.+-.. .-+...+-.|++..++.||..++.+|+=++++++.. .++..|..
T Consensus 308 ~v-~~~a~~aL~nl--~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~ 384 (529)
T 3tpo_A 308 PI-VTPALRAIGNI--VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 384 (529)
T ss_dssp HH-HHHHHHHHHHH--TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred hH-HHHHHHHHHHH--HccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHH
Confidence 33 44444455533 23322111 113445677888999999999999999999987642 56777878
Q ss_pred hccCccHHHHHHHHHHHHHhhCCCCh
Q psy6263 719 YSHDLDEEVAHNAIFSMGLVGAGTNN 744 (913)
Q Consensus 719 ~s~D~d~~Vr~~AiiALGlV~aGtnn 744 (913)
+..+.+..|+..|..|++=+..+.+.
T Consensus 385 lL~~~~~~v~~~A~~aL~nl~~~~~~ 410 (529)
T 3tpo_A 385 VLSKADFKTQKAAAWAITNYTSGGTV 410 (529)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCH
Confidence 88889999999999999977765443
No 30
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.07 E-value=0.13 Score=62.46 Aligned_cols=121 Identities=14% Similarity=0.041 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCC-c------hhHHHHHHhhccCccHH
Q psy6263 654 SMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNP-A------LNVIDVLNKYSHDLDEE 726 (913)
Q Consensus 654 ~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~-~------~~vid~L~~~s~D~d~~ 726 (913)
|+++..+++...-..|+++ -+.+...+...+++.++.+|.+++.++|-+..+.+ . ..++..|.+...|++..
T Consensus 345 r~~a~~~l~~l~~~~~~~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~ 423 (876)
T 1qgr_A 345 CKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHHCcHhh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 6666666666555555433 22234445556678899999999999999987654 2 25677777777899999
Q ss_pred HHHHHHHHHHHhhCCCC-----hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q psy6263 727 VAHNAIFSMGLVGAGTN-----NARLATMLRQLAQYHVKNTGHLFMVRIAQGLT 775 (913)
Q Consensus 727 Vr~~AiiALGlV~aGtn-----n~ri~~~Lr~L~~~~~~d~~~~f~~~iAqGLl 775 (913)
||..|+.++|-+..... .+-+..++..|......++.++-.+.-|++-+
T Consensus 424 vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l 477 (876)
T 1qgr_A 424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL 477 (876)
T ss_dssp HHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999998775432 23455555555554433455555544444443
No 31
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.06 E-value=0.11 Score=59.28 Aligned_cols=279 Identities=10% Similarity=0.017 Sum_probs=153.6
Q ss_pred cccccccccCchhhHHHHHHHHHHHHhcCCCC-----CchhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCC-----
Q psy6263 408 LTPIDKYLYTSEDYIKAGALLALGIVNCGVRN-----ECDPALALLSDYVLN-DSITLRIGAVLGLGLAYAGTKR----- 476 (913)
Q Consensus 408 l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~-----e~d~~l~lL~~~L~~-~~~~v~~gA~LGLGlay~Gs~~----- 476 (913)
+..|-+.|.++++.++.-|+.+++-+..+..+ ....++..|...+.+ ++..++..|+-+|+-......+
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 98 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 98 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 34445566677888888999988877543111 001345566666654 3677888887777764322111
Q ss_pred -HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHH
Q psy6263 477 -QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGY-------HEVASAILQTLIELPVSELQDGHYSRFLPLALAIT 548 (913)
Q Consensus 477 -e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n-------~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl 548 (913)
......|...+.+++ .++...|+.+|+-+..++.+ ..++..+++.+.+. +..+...++-+++-+
T Consensus 99 ~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~------~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT------NVKFLAITTDCLQIL 170 (529)
T ss_dssp HTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC------CHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC------CHHHHHHHHHHHHHH
Confidence 124455666666543 44666788888877766443 22344555555431 113333333355555
Q ss_pred hcCCc---------ccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccC--CH------HHHHHHHhhhhccCCCCCcccc
Q psy6263 549 YLGKK---------DAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSG--DV------LVVQEFLHVCSEHYTPTTSSAK 611 (913)
Q Consensus 549 ~~G~~---------e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTG--n~------~~Iq~LLh~~~~~~~~~~~~~~ 611 (913)
..+.. +.++.+++.+........+..+..++. ..+.. +. ..++.|++++.+.
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~--~l~~~~~~~~~~~~~g~~~~L~~ll~~~--------- 239 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK--VLSVCSSNKPAIVEAGGMQALGLHLTDP--------- 239 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH--HHTTSTTHHHHHHHTTHHHHHHTTTTSS---------
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHH--HHhcCcccHHHHHHCCCHHHHHHHHhCC---------
Confidence 44442 345566666665544444433222211 11111 11 1234444443211
Q ss_pred cccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChh
Q psy6263 612 EETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPT 691 (913)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~ 691 (913)
++++ ++.+..+|+-..-......+.+.+...+-.+++..++.
T Consensus 240 -------------------------------------~~~~-~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~ 281 (529)
T 1jdh_A 240 -------------------------------------SQRL-VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN 281 (529)
T ss_dssp -------------------------------------CHHH-HHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHH
T ss_pred -------------------------------------ChHH-HHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHH
Confidence 1233 45555555443322222222233556666777889999
Q ss_pred HHhHhHHHHHHhhcCCCc-------hhHHHHHHhhcc--CccHHHHHHHHHHHHHhhCCCC
Q psy6263 692 VRRAVPLAIALCSMSNPA-------LNVIDVLNKYSH--DLDEEVAHNAIFSMGLVGAGTN 743 (913)
Q Consensus 692 vR~~a~LALgL~~as~~~-------~~vid~L~~~s~--D~d~~Vr~~AiiALGlV~aGtn 743 (913)
+|..++-+|+-++.+++. ..++..|.++.. +.+..|+..|+.+++-+..+..
T Consensus 282 v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~ 342 (529)
T 1jdh_A 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342 (529)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999876541 245666666653 2347899999999999976543
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.85 E-value=0.3 Score=57.97 Aligned_cols=282 Identities=11% Similarity=0.032 Sum_probs=155.9
Q ss_pred ccccccccccCchhhHHHHHHHHHHHHhcCCCC-----CchhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCC-----
Q psy6263 407 GLTPIDKYLYTSEDYIKAGALLALGIVNCGVRN-----ECDPALALLSDYVLND-SITLRIGAVLGLGLAYAGTK----- 475 (913)
Q Consensus 407 ~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~-----e~d~~l~lL~~~L~~~-~~~v~~gA~LGLGlay~Gs~----- 475 (913)
++..|-+.|.++++.++.-|+.+|+-+.....+ +...++..|...|.+. +..++..|+-.|........
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 345556667777889999999999988654321 0123566666677654 67777777777774322111
Q ss_pred -CHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHcCCcCcccccchhhHHHHHHHH
Q psy6263 476 -RQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYH-------EVASAILQTLIELPVSELQDGHYSRFLPLALAI 547 (913)
Q Consensus 476 -~e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~-------~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgL 547 (913)
...+...|...+.+++ .++...|+.+|+-+..+..+. .++..+++.+... +.++...++-+|.-
T Consensus 95 ~~~g~i~~Lv~lL~~~~--~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~------~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT------NVKFLAITTDCLQI 166 (644)
T ss_dssp HTTTHHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC------CHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC------CHHHHHHHHHHHHH
Confidence 1124556666665543 446667888888776664321 2344455554431 11223333334555
Q ss_pred HhcCCcc---------cHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHH------HHHHHHhhhhccCCCCCccccc
Q psy6263 548 TYLGKKD---------AIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVL------VVQEFLHVCSEHYTPTTSSAKE 612 (913)
Q Consensus 548 l~~G~~e---------~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~------~Iq~LLh~~~~~~~~~~~~~~~ 612 (913)
+..+..+ .++.+++.+........+..++.++.-.-....+.. ++..|+.++.+.
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~---------- 236 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP---------- 236 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS----------
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC----------
Confidence 5555432 455666666654433333333322221111111111 234444444211
Q ss_pred ccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhH
Q psy6263 613 ETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTV 692 (913)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~v 692 (913)
+..+ ++.+..+|+-..-......+.+.+...+-++++..++.+
T Consensus 237 ------------------------------------~~~~-~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v 279 (644)
T 2z6h_A 237 ------------------------------------SQRL-VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINV 279 (644)
T ss_dssp ------------------------------------CHHH-HHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHH
T ss_pred ------------------------------------CHHH-HHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHH
Confidence 1233 555555555443222222222335666667778889999
Q ss_pred HhHhHHHHHHhhcCCCc-------hhHHHHHHhhccC-cc-HHHHHHHHHHHHHhhCCCC
Q psy6263 693 RRAVPLAIALCSMSNPA-------LNVIDVLNKYSHD-LD-EEVAHNAIFSMGLVGAGTN 743 (913)
Q Consensus 693 R~~a~LALgL~~as~~~-------~~vid~L~~~s~D-~d-~~Vr~~AiiALGlV~aGtn 743 (913)
|..++.+|+-++.+++. ..+++.|.++..+ ++ ..|+..|+.++|-+..+..
T Consensus 280 ~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~ 339 (644)
T 2z6h_A 280 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCc
Confidence 99999999888776542 2466777776543 33 6899999999999976544
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.75 E-value=0.047 Score=56.10 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=48.8
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccCccHHHHHHHHHHHHHh
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHDLDEEVAHNAIFSMGLV 738 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D~d~~Vr~~AiiALGlV 738 (913)
...+-.+++..++.+|..++.+|+-++.+++. ..+++.|.++.++.+..|+..|..+|+-+
T Consensus 182 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 182 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 44555677788999999999999988876653 25788888888888899999998888755
No 34
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.66 E-value=0.1 Score=63.33 Aligned_cols=277 Identities=12% Similarity=0.066 Sum_probs=147.2
Q ss_pred ccccCchhhHHHHHHHHHHHHhcCCC-CCc----hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhcc--C------CCHHH
Q psy6263 413 KYLYTSEDYIKAGALLALGIVNCGVR-NEC----DPALALLSDYVLNDSITLRIGAVLGLGLAYAG--T------KRQEV 479 (913)
Q Consensus 413 ~yL~s~~~~~k~GAllaLGLi~aG~~-~e~----d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~G--s------~~e~v 479 (913)
..+.+.+...+.+|+.++|.+..|.. ... +.++..|...+.++++.+|..++.+||-.... . .-+.+
T Consensus 376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 455 (861)
T 2bpt_A 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV 455 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHH
T ss_pred HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 34445667789999999999976643 111 23455566667788889999999888865422 1 12356
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCC----C------HHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHh
Q psy6263 480 VTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTG----Y------HEVASAILQTLIELPVSELQDGHYSRFLPLALAITY 549 (913)
Q Consensus 480 ~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~----n------~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~ 549 (913)
+..|...+.|+ .++...|+.+++-+.-+.+ . .+++..+++.+.+. +. ++.+...+.-++|.+.
T Consensus 456 l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~---d~-~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 456 VQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI---DN-EFNARASAFSALTTMV 528 (861)
T ss_dssp HHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS---CC-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc---Cc-chHHHHHHHHHHHHHH
Confidence 66666666553 4677788888886654422 1 24445555555421 11 1144445555666655
Q ss_pred cCCcccHH--------HHHHHHhcC--------C------ChhhhhHHHHHHHHHHhccCCH------HHHHHHHhhhhc
Q psy6263 550 LGKKDAID--------TTLAALEVL--------P------DPFRSMAKMMLKMCAYAGSGDV------LVVQEFLHVCSE 601 (913)
Q Consensus 550 ~G~~e~~~--------~ll~~L~~~--------~------~pi~r~~~~~~lglAyaGTGn~------~~Iq~LLh~~~~ 601 (913)
-..++... .+++.+... . .+-.|...+-+++-...+.|.. ..++.+++.+..
T Consensus 529 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 608 (861)
T 2bpt_A 529 EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK 608 (861)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHS
T ss_pred HHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcc
Confidence 44443322 233333321 0 1122333333333333333321 222333333321
Q ss_pred cCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhh-hhhhHHHHHHHHHHHhhcCccccccc--HH
Q psy6263 602 HYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEK-DLSSMQAVAALGVAVVALGEEIGSEM--ST 678 (913)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dv~~~~a~~~Lgiali~~ge~ig~em--~~ 678 (913)
. +. .+ +..+..+++...-..|+++.+-+ ..
T Consensus 609 ~----------------------------------------------~~~~v-~~~~~~~l~~l~~~~~~~~~~~l~~i~ 641 (861)
T 2bpt_A 609 K----------------------------------------------DSAFI-EDDVFYAISALAASLGKGFEKYLETFS 641 (861)
T ss_dssp T----------------------------------------------TGGGT-HHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred C----------------------------------------------CCCcH-HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0 01 23 44455566666556666543211 22
Q ss_pred HHHHHHhccCChhHHhHhHHHHHHhhcCCCc------hhHHHHHHhhccCc--cHHHHHHHHHHHHHhhCCCC
Q psy6263 679 RIFGQLGRYGEPTVRRAVPLAIALCSMSNPA------LNVIDVLNKYSHDL--DEEVAHNAIFSMGLVGAGTN 743 (913)
Q Consensus 679 r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~------~~vid~L~~~s~D~--d~~Vr~~AiiALGlV~aGtn 743 (913)
..+-..+...++.+|..+.-+++-++-.-+. ..++..|.+...+. +.+||..++-++|-+....+
T Consensus 642 ~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 642 PYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 2222333567888999887777765532221 24555555554444 47899999999988775433
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.59 E-value=0.22 Score=60.96 Aligned_cols=309 Identities=8% Similarity=-0.031 Sum_probs=162.0
Q ss_pred ccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCC-------CHHH
Q psy6263 407 GLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTK-------RQEV 479 (913)
Q Consensus 407 ~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~-------~e~v 479 (913)
+...+-.-|.++++..+..++--+........ ...++..|...|.+.++.++.-|+..|+.+..... ...+
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i--~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDAEL--ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHHHH--HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 33333344445556666655555443321000 02345666777778888999999999998655322 2356
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCc
Q psy6263 480 VTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYH------EVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKK 553 (913)
Q Consensus 480 ~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~------~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~ 553 (913)
...|...|.++. +.++...|+-+|.-+.....+. .++..+++.+.+. ++.+.+.++-+|+-+..+..
T Consensus 194 i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~------~~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 194 VSAIVRTMQNTN-DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP------VDSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCC------CHHHHHHHHHHHHHHhCCCh
Confidence 666777775332 3455566777777643221111 2445556555431 22556666666766655432
Q ss_pred ---------ccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCH---------HHHHHHHhhhhccCCCCCcccccccc
Q psy6263 554 ---------DAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDV---------LVVQEFLHVCSEHYTPTTSSAKEETS 615 (913)
Q Consensus 554 ---------e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~---------~~Iq~LLh~~~~~~~~~~~~~~~~~~ 615 (913)
..++.+++.+.. +++-.+..++-++. ....+|. ..+..|++++.+..
T Consensus 267 ~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~--~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~------------ 331 (780)
T 2z6g_A 267 GAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQ--ILAYGNQESKLIILASGGPQALVNIMRTYT------------ 331 (780)
T ss_dssp THHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHH--HHHTTCHHHHHHHHTTTHHHHHHHHHTTCC------------
T ss_pred hhHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHH--HHhcCChHHHHHHHHcCCHHHHHHHHhcCC------------
Confidence 234455655554 44444444333332 2222332 23445555443210
Q ss_pred cccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCccccc----ccHHHHHHHHhccCChh
Q psy6263 616 ATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGS----EMSTRIFGQLGRYGEPT 691 (913)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~----em~~r~~~~Ll~~~~~~ 691 (913)
.... ...+..+|.... ...+... .-+...+-.+++..++.
T Consensus 332 ---------------------------------~~~~-~~~a~~aL~~Ls--~~~~~~~~i~~~g~l~~Ll~lL~~~~~~ 375 (780)
T 2z6g_A 332 ---------------------------------YEKL-LWTTSRVLKVLS--VCSSNKPAIVEAGGMQALGLHLTDPSQR 375 (780)
T ss_dssp ---------------------------------CHHH-HHHHHHHHHHHH--TSTTHHHHHHHTTHHHHHGGGTTCSCHH
T ss_pred ---------------------------------HHHH-HHHHHHHHHHhh--cChHHHHHHHHhchHHHHHHHHcCCchH
Confidence 0111 112222222221 1111111 11234455566778888
Q ss_pred HHhHhHHHHHHhhcCCC----chhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhH--------HHHHHHHHHHHhc
Q psy6263 692 VRRAVPLAIALCSMSNP----ALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNAR--------LATMLRQLAQYHV 759 (913)
Q Consensus 692 vR~~a~LALgL~~as~~----~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~r--------i~~~Lr~L~~~~~ 759 (913)
+++.++-+|+-++.+.+ ...++..|.++.++.+..|+.+|..+++-+..+....+ +..+++.|.. .
T Consensus 376 ~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~ 453 (780)
T 2z6g_A 376 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR--A 453 (780)
T ss_dssp HHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHc--c
Confidence 99988888887775543 34788999998889999999999999999987653211 2223333321 1
Q ss_pred CCh-hHHHHHHHHHHHhhc
Q psy6263 760 KNT-GHLFMVRIAQGLTHM 777 (913)
Q Consensus 760 ~d~-~~~f~~~iAqGLl~~ 777 (913)
.++ ..+..+..++|-+..
T Consensus 454 ~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 454 GDREDITEPAICALRHLTS 472 (780)
T ss_dssp TTCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 233 677777788887654
No 36
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.58 E-value=0.12 Score=52.47 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=71.6
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCCch-------hHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhH--H-
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL-------NVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNAR--L- 747 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~-------~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~r--i- 747 (913)
...+-.+++..++.+|..++-+|+-++.+++.. .++..|.++..+.+..|+..|+.+++-+..+..+.+ +
T Consensus 130 i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 209 (252)
T 4hxt_A 130 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIV 209 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445567778899999999999999998776543 488899999889999999999999999997543311 0
Q ss_pred -HHHHHHHHHH-hcCChhHHHHHHHHHHHhhcCCC
Q psy6263 748 -ATMLRQLAQY-HVKNTGHLFMVRIAQGLTHMGKG 780 (913)
Q Consensus 748 -~~~Lr~L~~~-~~~d~~~~f~~~iAqGLl~~Gkg 780 (913)
...+..|... .+.|+..+-.+..+++-+.-...
T Consensus 210 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 210 DAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 0112223322 24566666666666665554443
No 37
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.50 E-value=0.0023 Score=60.25 Aligned_cols=50 Identities=12% Similarity=0.015 Sum_probs=23.0
Q ss_pred HHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHH
Q psy6263 683 QLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMG 736 (913)
Q Consensus 683 ~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALG 736 (913)
.++++.++.||+.++.|||-+. ...++..|.++.+|.+..||..|+-|||
T Consensus 80 ~~L~d~~~~VR~~A~~aL~~~~----~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 80 KLLEDDSGFVRSGAARSLEQIG----GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHC----SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHcCCCHHHHHHHHHHHHHhC----cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3334445555555555544442 2334444444444444555555544443
No 38
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.46 E-value=0.14 Score=59.24 Aligned_cols=311 Identities=12% Similarity=0.062 Sum_probs=170.0
Q ss_pred cccchhhHHHHHHhhhhhcccCCC---------ccccccccccC-chhhHHHHHHHHHHHHhcCCCCCch-----hHHHH
Q psy6263 383 KNKQHGMLSAAASLGLIYLWDVDG---------GLTPIDKYLYT-SEDYIKAGALLALGIVNCGVRNECD-----PALAL 447 (913)
Q Consensus 383 k~~~~~k~sA~aslGlI~~~~~~~---------~l~~l~~yL~s-~~~~~k~GAllaLGLi~aG~~~e~d-----~~l~l 447 (913)
++..-.++.|+.++.-+..-+.++ ++..|-++|.+ +++.++.-|+.+|+-+.+|....+. .++..
T Consensus 68 s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~ 147 (510)
T 3ul1_B 68 SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA 147 (510)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHH
Confidence 334444566665555333322222 23334455643 4567888999999988776432111 25667
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccCCC-H------HHHHHHHHhhcCCC---CcHHHHHHHHHHHHHHHhcCCC---H
Q psy6263 448 LSDYVLNDSITLRIGAVLGLGLAYAGTKR-Q------EVVTLLLPVLTDRK---STPEVVAFAAVAASLIYVGTGY---H 514 (913)
Q Consensus 448 L~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e------~v~e~L~~~L~d~~---~~~ev~~~A~laLGLi~lGs~n---~ 514 (913)
|...|.+++..++.-|+-+||-+...+.. . .+...|...+.... ....+...++.+|.-+..+... .
T Consensus 148 Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 227 (510)
T 3ul1_B 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 227 (510)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH
Confidence 88888899999999999999987543221 1 12345666665332 2233444677777776665532 2
Q ss_pred HHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCccc---------HHHHHHHHhcCCChhhhhHHHHHHHHHHhc
Q psy6263 515 EVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDA---------IDTTLAALEVLPDPFRSMAKMMLKMCAYAG 585 (913)
Q Consensus 515 ~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~---------~~~ll~~L~~~~~pi~r~~~~~~lglAyaG 585 (913)
..+..++..+..--. ..++.+...++.+|+-+.-+..+. ++.+++.+. .+++-.+..++.++ ....
T Consensus 228 ~~~~~~lp~L~~LL~--~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~al~aL--~nl~ 302 (510)
T 3ul1_B 228 DAVEQILPTLVRLLH--HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAI--GNIV 302 (510)
T ss_dssp HHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT-CSCHHHHHHHHHHH--HHHT
T ss_pred HHHHhHHHHHHHHHh--cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc-CCChhhhhHHHHHH--HHhh
Confidence 333444444443100 112256666666676666555443 334444444 45555555544443 4455
Q ss_pred cCCHHHHHHHHhhhh-ccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHH
Q psy6263 586 SGDVLVVQEFLHVCS-EHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVA 664 (913)
Q Consensus 586 TGn~~~Iq~LLh~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgia 664 (913)
+|+....+.++..-. +.... .+ . . .++.+ +..+..+|+-.
T Consensus 303 ~~~~~~~~~i~~~g~l~~L~~-----------------LL----~---------~--------~~~~v-~~~A~~aL~nl 343 (510)
T 3ul1_B 303 TGTDEQTQKVIDAGALAVFPS-----------------LL----T---------N--------PKTNI-QKEATWTMSNI 343 (510)
T ss_dssp TSCHHHHHHHHHTTGGGGCC------------------CT----T---------C--------SSHHH-HHHHHHHHHHH
T ss_pred cCCHHHHHHHhhccchHHHHH-----------------Hh----c---------C--------CCHHH-HHHHHHHHHHH
Confidence 666655555443110 00000 00 0 0 02334 55555555533
Q ss_pred HhhcCcccc-----cccHHHHHHHHhccCChhHHhHhHHHHHHhhc-CCCc-------hhHHHHHHhhccCccHHHHHHH
Q psy6263 665 VVALGEEIG-----SEMSTRIFGQLGRYGEPTVRRAVPLAIALCSM-SNPA-------LNVIDVLNKYSHDLDEEVAHNA 731 (913)
Q Consensus 665 li~~ge~ig-----~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~a-s~~~-------~~vid~L~~~s~D~d~~Vr~~A 731 (913)
+.+.+-. ..-+...+-.+++.+++.+|+.++.||+=+.. +++. ..++..|.++.+..|..++..+
T Consensus 344 --~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~ 421 (510)
T 3ul1_B 344 --TAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 421 (510)
T ss_dssp --TTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred --HcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHH
Confidence 2221100 11134455667788999999999999986654 3432 2567788888888888888887
Q ss_pred HHHHHHhh
Q psy6263 732 IFSMGLVG 739 (913)
Q Consensus 732 iiALGlV~ 739 (913)
+-|+.-++
T Consensus 422 L~aL~nil 429 (510)
T 3ul1_B 422 LDAISNIF 429 (510)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665443
No 39
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.45 E-value=0.37 Score=59.18 Aligned_cols=341 Identities=10% Similarity=0.010 Sum_probs=190.2
Q ss_pred ccccccchhhHHHHHHhhhhhcccCCCcc---------ccccccccCchhhHHHHHHHHHHHHhcCCCCCc-----hhHH
Q psy6263 380 WMYKNKQHGMLSAAASLGLIYLWDVDGGL---------TPIDKYLYTSEDYIKAGALLALGIVNCGVRNEC-----DPAL 445 (913)
Q Consensus 380 wl~k~~~~~k~sA~aslGlI~~~~~~~~l---------~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~-----d~~l 445 (913)
|+.+....++.-|+.++..|..|.++.+- ..|-+-+.++++..+--|+-++|.+..+ .++ +...
T Consensus 255 ~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv 332 (810)
T 3now_A 255 KLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV 332 (810)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH
T ss_pred HhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc
Confidence 66677777788888888888877665443 3334445578888999999999997543 111 1123
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhc-cCCC-----------HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCC-
Q psy6263 446 ALLSDYVLNDSITLRIGAVLGLGLAYA-GTKR-----------QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTG- 512 (913)
Q Consensus 446 ~lL~~~L~~~~~~v~~gA~LGLGlay~-Gs~~-----------e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~- 512 (913)
..|...+.+.+..++.-|+.+|.-... |+.+ +++...|...|.++..+.++...|+-||.-+-.+..
T Consensus 333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v 412 (810)
T 3now_A 333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC 412 (810)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH
Confidence 566677777778888888887765432 2211 244555666666542122345567776663322221
Q ss_pred ------CHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcc--------------------------------
Q psy6263 513 ------YHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKD-------------------------------- 554 (913)
Q Consensus 513 ------n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e-------------------------------- 554 (913)
+..++..|++.+... +. .+...+.-.|+=+.-|..+
T Consensus 413 k~~lv~d~g~Ip~LV~LL~s~-----d~-~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~ 486 (810)
T 3now_A 413 KEKLIEDKASIHALMDLARGG-----NQ-SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINK 486 (810)
T ss_dssp HHHHHHCHHHHHHHHHHHHTT-----CG-GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHhCCC-----Ch-HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHH
Confidence 223445566666531 12 5666666677777666521
Q ss_pred ---------cHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCH-------HHHHHHHhhhhccCCCCCccccccccccc
Q psy6263 555 ---------AIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDV-------LVVQEFLHVCSEHYTPTTSSAKEETSATG 618 (913)
Q Consensus 555 ---------~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~-------~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~ 618 (913)
.++.+++.| ..++|-.+..++++++-. +|.... -++.-|++++.+.
T Consensus 487 r~~~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NL-A~d~~~r~~Vv~~Gaip~Lv~LL~s~---------------- 548 (810)
T 3now_A 487 RITVLANEGITTALCALA-KTESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEG---------------- 548 (810)
T ss_dssp HHHHHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHH-HTSHHHHHHHHHTTHHHHHHHHHHSS----------------
T ss_pred HHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHccC----------------
Confidence 122233333 446677777777766533 232211 1233445544321
Q ss_pred ccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCccc--c----cccHHHHHHHHhccC-Chh
Q psy6263 619 TAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEI--G----SEMSTRIFGQLGRYG-EPT 691 (913)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~i--g----~em~~r~~~~Ll~~~-~~~ 691 (913)
.+.. ++.|..+|+-..+....++ + .+ +.+-+-.|++.. +..
T Consensus 549 ------------------------------~~~~-k~~Aa~AL~nL~~~~~p~~~~~~~~~~~-aIppLv~LL~~~~~~l 596 (810)
T 3now_A 549 ------------------------------TEKG-KRHATQALARIGITINPEVSFSGQRSLD-VIRPLLNLLQQDCTAL 596 (810)
T ss_dssp ------------------------------CHHH-HHHHHHHHHHHHHHSCHHHHTTTHHHHH-THHHHHHTTSTTSCHH
T ss_pred ------------------------------CHHH-HHHHHHHHHHHhcCCChhhhhcchhhhc-HHHHHHHHhCCCCcHH
Confidence 1222 5666666765554422111 0 11 233333455433 334
Q ss_pred HHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCCh-hHHH---HHHHHHHHHh-c
Q psy6263 692 VRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNN-ARLA---TMLRQLAQYH-V 759 (913)
Q Consensus 692 vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn-~ri~---~~Lr~L~~~~-~ 759 (913)
.+.-++.||.=++.+++. ...++.|..+..+.+..|+.+|.-+++=+..++.+ .++. +.++.|...- +
T Consensus 597 ~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 597 ENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC
Confidence 456778888877665432 14566777776667788999999999988875432 1111 1223333322 4
Q ss_pred CChhHHHHHHHHHHHhhcC
Q psy6263 760 KNTGHLFMVRIAQGLTHMG 778 (913)
Q Consensus 760 ~d~~~~f~~~iAqGLl~~G 778 (913)
.|...+-.+.-|++-+..|
T Consensus 677 ~d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 677 EDEETATACAGALAIITSV 695 (810)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCC
Confidence 5666777777777777665
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.40 E-value=0.048 Score=54.45 Aligned_cols=62 Identities=10% Similarity=0.070 Sum_probs=49.5
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCCch-------hHHHHHHhhccCccHHHHHHHHHHHHHhh
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL-------NVIDVLNKYSHDLDEEVAHNAIFSMGLVG 739 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~-------~vid~L~~~s~D~d~~Vr~~AiiALGlV~ 739 (913)
...+-++++..++.+|..++.+|+-++.+++.. .+++.|.++.++.+..|+..|..+|+-+.
T Consensus 140 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 444556677789999999999999988765432 57888999888899999999988887653
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.37 E-value=0.15 Score=59.15 Aligned_cols=273 Identities=12% Similarity=0.073 Sum_probs=154.0
Q ss_pred ccccc-CchhhHHHHHHHHHHHHhcCCCCCc-----hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCC-CHH------
Q psy6263 412 DKYLY-TSEDYIKAGALLALGIVNCGVRNEC-----DPALALLSDYVLNDSITLRIGAVLGLGLAYAGTK-RQE------ 478 (913)
Q Consensus 412 ~~yL~-s~~~~~k~GAllaLGLi~aG~~~e~-----d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~-~e~------ 478 (913)
-.+|. ++++.++.-|+.+|+-+..|..... ..++..|...+.+++..++..|+.+||-+...+. ..+
T Consensus 125 v~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g 204 (529)
T 3tpo_A 125 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHG 204 (529)
T ss_dssp HHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcC
Confidence 34443 3456788888888888876643211 1255677778888999999999999997643321 111
Q ss_pred HHHHHHHhhcCCC---CcHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCC
Q psy6263 479 VVTLLLPVLTDRK---STPEVVAFAAVAASLIYVGTGY---HEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGK 552 (913)
Q Consensus 479 v~e~L~~~L~d~~---~~~ev~~~A~laLGLi~lGs~n---~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~ 552 (913)
+...|+..+.... ....+...++.+|.-+..+... ...+..++..+..--. ..++.+...++.+|+-+..+.
T Consensus 205 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~--~~~~~v~~~a~~aL~~l~~~~ 282 (529)
T 3tpo_A 205 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLADSCWAISYLTDGP 282 (529)
T ss_dssp CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSC
T ss_pred CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhc--CCcHHHHHHHHHHHHHhhhhh
Confidence 2345666665432 2233444677777776666532 2333444444433100 112255666666777666665
Q ss_pred ccc---------HHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHh---------hhhccCCCCCccccccc
Q psy6263 553 KDA---------IDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLH---------VCSEHYTPTTSSAKEET 614 (913)
Q Consensus 553 ~e~---------~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh---------~~~~~~~~~~~~~~~~~ 614 (913)
.+. ++.+++.|. ++++..+..++.++ ....+|+....+.++. ++.+.
T Consensus 283 ~~~~~~v~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL--~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~------------ 347 (529)
T 3tpo_A 283 NERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAI--GNIVTGTDEQTQKVIDAGALAVFPSLLTNP------------ 347 (529)
T ss_dssp HHHHHHHHTTTCHHHHHHHHT-CSCHHHHHHHHHHH--HHHTTSCHHHHHHHHHTTGGGGHHHHTTCS------------
T ss_pred hhhHHHHHhccchHHHHHHhc-CCChhHHHHHHHHH--HHHHccchHHHHHHhhcccHHHHHHHHcCC------------
Confidence 443 334454444 45555555544443 3344666544444332 11100
Q ss_pred ccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccc-----cccHHHHHHHHhccCC
Q psy6263 615 SATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIG-----SEMSTRIFGQLGRYGE 689 (913)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig-----~em~~r~~~~Ll~~~~ 689 (913)
++.+ +..|..+|+-.. .|.+-. ..-+...+-.+++.++
T Consensus 348 ----------------------------------~~~i-~~~a~~aL~nl~--~~~~~~~~~v~~~g~i~~Lv~lL~~~~ 390 (529)
T 3tpo_A 348 ----------------------------------KTNI-QKEATWTMSNIT--AGRQDQIQQVVNHGLVPFLVGVLSKAD 390 (529)
T ss_dssp ----------------------------------SHHH-HHHHHHHHHHHH--TSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred ----------------------------------CHHH-HHHHHHHHHHHh--cccHHHHHHHHhcCcHHHHHHHhcCCC
Confidence 2334 555555555432 221100 1113445556778899
Q ss_pred hhHHhHhHHHHHHhhc-CCCc-------hhHHHHHHhhccCccHHHHHHHHHHHHHh
Q psy6263 690 PTVRRAVPLAIALCSM-SNPA-------LNVIDVLNKYSHDLDEEVAHNAIFSMGLV 738 (913)
Q Consensus 690 ~~vR~~a~LALgL~~a-s~~~-------~~vid~L~~~s~D~d~~Vr~~AiiALGlV 738 (913)
+.+|..++.||+=++. +++. ..++..|.++.+..|..++..++-||.-+
T Consensus 391 ~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 391 FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 447 (529)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9999999999986654 4442 24677888888888888888876666544
No 42
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.37 E-value=0.14 Score=65.56 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=62.4
Q ss_pred hhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc------hhHHHHHHhhccCc
Q psy6263 650 KDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA------LNVIDVLNKYSHDL 723 (913)
Q Consensus 650 ~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~------~~vid~L~~~s~D~ 723 (913)
..+ |.+++.++|-..-..+++.-......+++.|.+..++.+|+.++-++|.+....|. ..++..+.+..+|.
T Consensus 189 ~~v-R~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~ 267 (1230)
T 1u6g_C 189 LAV-RKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD 267 (1230)
T ss_dssp HHH-HHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC
T ss_pred HHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC
Confidence 345 77777777776655555442333555666665555567899999999988754332 47888888888889
Q ss_pred cHHHHHHHHHHHHHhhC
Q psy6263 724 DEEVAHNAIFSMGLVGA 740 (913)
Q Consensus 724 d~~Vr~~AiiALGlV~a 740 (913)
++.||..|.-+++.+..
T Consensus 268 ~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 268 DDELREYCIQAFESFVR 284 (1230)
T ss_dssp CTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999988887765
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.34 E-value=0.076 Score=52.94 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=70.4
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCch-------hHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhH-HH
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL-------NVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNAR-LA 748 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~-------~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~r-i~ 748 (913)
+...+-.+++..++.+|..++.+|+-++.+++.. .++..|.++..+.+..|+..|+.+++-+..+..+.+ ..
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 176 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 176 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 3455666778899999999999999999776542 478888898888899999999999999987643321 10
Q ss_pred ---HHHHHHHHH-hcCChhHHHHHHHHHHHh
Q psy6263 749 ---TMLRQLAQY-HVKNTGHLFMVRIAQGLT 775 (913)
Q Consensus 749 ---~~Lr~L~~~-~~~d~~~~f~~~iAqGLl 775 (913)
..+..|... .+.|+..+-.+..|++-+
T Consensus 177 ~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 177 KEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 122223322 256777777777666644
No 44
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.22 E-value=0.34 Score=55.16 Aligned_cols=276 Identities=9% Similarity=-0.024 Sum_probs=150.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-------HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCC---
Q psy6263 444 ALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-------QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGY--- 513 (913)
Q Consensus 444 ~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-------e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n--- 513 (913)
++..|...+.+.++.++.-|+..|+-...+..+ +.+...|...+.++. +.++...|+-+|+-+.....+
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~-~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCchhHHH
Confidence 345566667778888999998888876544322 245556666665321 344555677777753211100
Q ss_pred ---HHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCc---------ccHHHHHHHHhcCCChhhhhHHHHHHHH
Q psy6263 514 ---HEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKK---------DAIDTTLAALEVLPDPFRSMAKMMLKMC 581 (913)
Q Consensus 514 ---~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~---------e~~~~ll~~L~~~~~pi~r~~~~~~lgl 581 (913)
...+..+++.+.+. ++.+.+.++-+|+-+..+.. ..++.+++.+.. +++-.+..++.++.
T Consensus 97 i~~~g~i~~L~~lL~~~------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~- 168 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSP------VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQ- 168 (529)
T ss_dssp HHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHH-
T ss_pred HHHcCCHHHHHHHHcCC------CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHH-
Confidence 02344555555431 22455566666666554432 234445555543 45544544433332
Q ss_pred HHhccCCH---------HHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhh
Q psy6263 582 AYAGSGDV---------LVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDL 652 (913)
Q Consensus 582 AyaGTGn~---------~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 652 (913)
-...+|. ..++.|++++.+... ...
T Consensus 169 -~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~---------------------------------------------~~~ 202 (529)
T 1jdh_A 169 -ILAYGNQESKLIILASGGPQALVNIMRTYTY---------------------------------------------EKL 202 (529)
T ss_dssp -HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC---------------------------------------------HHH
T ss_pred -HHHhCCHHHHHHHHHCCCHHHHHHHHHhCCh---------------------------------------------HHH
Confidence 2222332 235556665543210 111
Q ss_pred hhHHHHHHHHHHHhhcCcccc----cccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc----hhHHHHHHhhccCcc
Q psy6263 653 SSMQAVAALGVAVVALGEEIG----SEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA----LNVIDVLNKYSHDLD 724 (913)
Q Consensus 653 ~~~~a~~~Lgiali~~ge~ig----~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~----~~vid~L~~~s~D~d 724 (913)
...+..+|. .++...+.. ..-+...+-.+++..++.+|+.++-+|+-++.+.+. ..++..|.++.++.+
T Consensus 203 -~~~a~~~L~--~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~ 279 (529)
T 1jdh_A 203 -LWTTSRVLK--VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD 279 (529)
T ss_dssp -HHHHHHHHH--HHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC
T ss_pred -HHHHHHHHH--HHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCC
Confidence 222222222 111111110 112344555667778999999999998888765432 378889999989999
Q ss_pred HHHHHHHHHHHHHhhCCCC-hhH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q psy6263 725 EEVAHNAIFSMGLVGAGTN-NAR-------LATMLRQLAQYHVKNTGHLFMVRIAQGLTHMG 778 (913)
Q Consensus 725 ~~Vr~~AiiALGlV~aGtn-n~r-------i~~~Lr~L~~~~~~d~~~~f~~~iAqGLl~~G 778 (913)
..|+..|.-+++-+..+.. +.+ +..+++.|. ....++..+..+..++|-+..+
T Consensus 280 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~-~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 280 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL-RAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHH-ccCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999999987643 111 222222222 1223467777777777766544
No 45
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.08 E-value=0.53 Score=57.14 Aligned_cols=116 Identities=19% Similarity=0.146 Sum_probs=71.2
Q ss_pred HHHHHHhhhhhcccCCC----ccccccccccCchhhHHHHHHHHHHHHhcCCCCC-c----hhHHHHHHHhhcCCCHHHH
Q psy6263 390 LSAAASLGLIYLWDVDG----GLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNE-C----DPALALLSDYVLNDSITLR 460 (913)
Q Consensus 390 ~sA~aslGlI~~~~~~~----~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e-~----d~~l~lL~~~L~~~~~~v~ 460 (913)
..|..+++.+...-.+. .+..+..++.+.+..++.+|+.++|.+..|...+ . ..++..|...+.+++..+|
T Consensus 346 ~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr 425 (876)
T 1qgr_A 346 KAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVR 425 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 45555555543322122 2223344555677889999999999997765411 1 2345556666778888999
Q ss_pred HHHHHHHHHHhccCC--------CHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHH
Q psy6263 461 IGAVLGLGLAYAGTK--------RQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIY 508 (913)
Q Consensus 461 ~gA~LGLGlay~Gs~--------~e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~ 508 (913)
..|+.+||-..-... -+.++..|...+.++ .++...|+.+|+-+.
T Consensus 426 ~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~ 478 (876)
T 1qgr_A 426 DTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE---PRVASNVCWAFSSLA 478 (876)
T ss_dssp HHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence 999999997654322 134556666666552 446567777777655
No 46
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.96 E-value=0.02 Score=53.60 Aligned_cols=85 Identities=15% Similarity=0.025 Sum_probs=65.4
Q ss_pred HHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHh
Q psy6263 679 RIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYH 758 (913)
Q Consensus 679 r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~~~~ 758 (913)
..+-.++++.++.||+.++.+||-+. +..++..|.+..+|.+..||..|+.|||-++ +++....|..+. .
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~----~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----~~~a~~~L~~~l--~ 114 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQ----DERAVEPLIKLLEDDSGFVRSGAARSLEQIG----GERVRAAMEKLA--E 114 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGC----SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----SHHHHHHHHHHT--T
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHHHHHHHH--h
Confidence 45666778899999999999998874 3567888888878999999999999999986 344444444443 3
Q ss_pred cCChhHHHHHHHHHH
Q psy6263 759 VKNTGHLFMVRIAQG 773 (913)
Q Consensus 759 ~~d~~~~f~~~iAqG 773 (913)
+.|+.++..+.-|+|
T Consensus 115 d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 115 TGTGFARKVAVNYLE 129 (131)
T ss_dssp SCCTHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHH
Confidence 567888888877765
No 47
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.79 E-value=1.5 Score=51.87 Aligned_cols=275 Identities=9% Similarity=-0.030 Sum_probs=151.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-------HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCC----
Q psy6263 444 ALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-------QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTG---- 512 (913)
Q Consensus 444 ~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-------e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~---- 512 (913)
++..|...|.+.++.++.-|+..|+-......+ +.+...|...|.++. +.++...|+-+|..+-....
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~-~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcChhhHHH
Confidence 355677777788899999999999987665542 245666777776432 34555566666664221100
Q ss_pred --CHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCc---------ccHHHHHHHHhcCCChhhhhHHHHHHHH
Q psy6263 513 --YHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKK---------DAIDTTLAALEVLPDPFRSMAKMMLKMC 581 (913)
Q Consensus 513 --n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~---------e~~~~ll~~L~~~~~pi~r~~~~~~lgl 581 (913)
...++..+++.+... ++.+.+.++-+|+-+..+.. ..++.+++.|.. +++-.+..++-++
T Consensus 94 i~~~g~i~~Lv~lL~~~------~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L-- 164 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSP------VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCL-- 164 (644)
T ss_dssp HHTTTHHHHHHHHTTCS------SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHH--
T ss_pred HHHcCCHHHHHHHHhCC------CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc-CCHHHHHHHHHHH--
Confidence 012445555555431 22555566666666554432 234455555543 3443333322222
Q ss_pred HHhccCCH---------HHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhh
Q psy6263 582 AYAGSGDV---------LVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDL 652 (913)
Q Consensus 582 AyaGTGn~---------~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 652 (913)
.-...++. ..++.|++++.+.. .+.+
T Consensus 165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~---------------------------------------------~~~~ 199 (644)
T 2z6h_A 165 QILAYGNQESKLIILASGGPQALVNIMRTYT---------------------------------------------YEKL 199 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC---------------------------------------------CHHH
T ss_pred HHHHhcCcHHHHHHHHcCChHHHHHHHHcCC---------------------------------------------hHHH
Confidence 22222332 23556666664221 0111
Q ss_pred hhHHHHHHHHHHHhhcCccccc----ccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc----hhHHHHHHhhccCcc
Q psy6263 653 SSMQAVAALGVAVVALGEEIGS----EMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA----LNVIDVLNKYSHDLD 724 (913)
Q Consensus 653 ~~~~a~~~Lgiali~~ge~ig~----em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~----~~vid~L~~~s~D~d 724 (913)
+..+..+|.... ...+... .-+...+-.+++..++.+|+.++-+|+-++...+. ..++..|.++.++.+
T Consensus 200 -~~~a~~~L~nLs--~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d 276 (644)
T 2z6h_A 200 -LWTTSRVLKVLS--VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD 276 (644)
T ss_dssp -HHHHHHHHHHHT--TCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSC
T ss_pred -HHHHHHHHHHHh--cCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCC
Confidence 233333332221 1111101 11344455566778899999999999888765432 378899999988899
Q ss_pred HHHHHHHHHHHHHhhCCCCh-hH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHhhc
Q psy6263 725 EEVAHNAIFSMGLVGAGTNN-AR-------LATMLRQLAQYHVKNTGHLFMVRIAQGLTHM 777 (913)
Q Consensus 725 ~~Vr~~AiiALGlV~aGtnn-~r-------i~~~Lr~L~~~~~~d~~~~f~~~iAqGLl~~ 777 (913)
..|+..|.-+++-+..+... .+ +..+++.|. .....+..+..+..++|-+..
T Consensus 277 ~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~-~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 277 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL-RAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHH-ccCCcHHHHHHHHHHHHHHhc
Confidence 99999999999998876432 11 122222222 111225677777777777654
No 48
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.41 E-value=1.5 Score=52.12 Aligned_cols=97 Identities=10% Similarity=0.085 Sum_probs=61.4
Q ss_pred cHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhH----HHHHHhhcc-CccHHHHHHHHHHHHHhhCCCChhHHHHH
Q psy6263 676 MSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNV----IDVLNKYSH-DLDEEVAHNAIFSMGLVGAGTNNARLATM 750 (913)
Q Consensus 676 m~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~v----id~L~~~s~-D~d~~Vr~~AiiALGlV~aGtnn~ri~~~ 750 (913)
.+...+..++.+.++++||.+--+|..+....|...+ ...+.+... |.|..||..|+=-+--+. |...+..+
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~I 405 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQI 405 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHH
Confidence 4666777888889999999999999999877764322 222333334 889999887765444333 22235566
Q ss_pred HHHHHHHh-cCChhHHHHHHHHHHHh
Q psy6263 751 LRQLAQYH-VKNTGHLFMVRIAQGLT 775 (913)
Q Consensus 751 Lr~L~~~~-~~d~~~~f~~~iAqGLl 775 (913)
+++|..|- ..|+..+-.+.-+.|.+
T Consensus 406 v~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 406 VAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 66776654 34555444444455544
No 49
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.14 E-value=1.8 Score=45.18 Aligned_cols=203 Identities=10% Similarity=0.027 Sum_probs=112.1
Q ss_pred HhcCCCH-HHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhcc
Q psy6263 508 YVGTGYH-EVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGS 586 (913)
Q Consensus 508 ~lGs~n~-~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGT 586 (913)
-+|++.. +-+..+++.+.. .+| -+...-..+..+.--...+..-.+.+.|-.++..-.|+.++..+|-+ +
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~-----~~~-gf~~~~~~a~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~---~ 99 (240)
T 3l9t_A 29 QMGRGSMKQYVARLEKDFSL-----IEH-GFKEEEQRALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL---S 99 (240)
T ss_dssp -----CHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT---T
T ss_pred hhhhhHHHHHHHHHHHHHHH-----hhc-ccHHHHHHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc---c
Confidence 3466554 333444444432 333 33333344555555445566777888888888888899888865544 3
Q ss_pred CCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Q psy6263 587 GDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVV 666 (913)
Q Consensus 587 Gn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali 666 (913)
-+..+...+......+ +.| .| +..+..+++=.+.
T Consensus 100 ~~~~~L~~ir~~va~D----------------------------------------~~W-----rV-re~lA~a~~~~~~ 133 (240)
T 3l9t_A 100 KDKEILIFMRDEVSKD----------------------------------------NNW-----RV-QEVLAKAFDEFCK 133 (240)
T ss_dssp TSHHHHHHHHHTGGGC----------------------------------------SCH-----HH-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCC----------------------------------------CCc-----cH-HHHHHHHHHHHHH
Confidence 3333333333212111 111 22 2222333443333
Q ss_pred hcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhc----CCCchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCC
Q psy6263 667 ALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSM----SNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGT 742 (913)
Q Consensus 667 ~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~a----s~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGt 742 (913)
.. +++.++..+...+++.|++|||.|..++-.-+. -+.-..++..|..+..|++.+||.++--+|-=+. -
T Consensus 134 ~~----~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S--K 207 (240)
T 3l9t_A 134 KI----EYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS--K 207 (240)
T ss_dssp HH----CTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH--T
T ss_pred hc----CHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh--h
Confidence 22 266667889999999999999998776532111 1222368888899999999999988755544433 2
Q ss_pred ChhH-HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q psy6263 743 NNAR-LATMLRQLAQYHVKNTGHLFMVRIAQGL 774 (913)
Q Consensus 743 nn~r-i~~~Lr~L~~~~~~d~~~~f~~~iAqGL 774 (913)
.||. |.++ +......+|...+.++.|.-.
T Consensus 208 ~~Pd~V~~~---~~~w~~~~~~~~~i~k~A~k~ 237 (240)
T 3l9t_A 208 KFPDLVKIE---LKNWKLESKEINQVYKLASKF 237 (240)
T ss_dssp TCHHHHHHH---HHTCCCCSHHHHHHHHHHTTT
T ss_pred hCHHHHHHH---HHHhhccCHhHHHHHHHHHhh
Confidence 3443 3333 333335678888888877643
No 50
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.07 E-value=0.35 Score=49.43 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=54.8
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCC
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTN 743 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtn 743 (913)
+...+-.+++..++.+|..++.+|+-++.+++. ..++..|.++..+++..|+..|+.+|+-+..+..
T Consensus 139 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 212 (252)
T 4db8_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 212 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH
Confidence 455566777889999999999999999876643 3567888888888899999999999999886543
No 51
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.54 E-value=7 Score=43.05 Aligned_cols=235 Identities=11% Similarity=-0.054 Sum_probs=128.3
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHh--------------cCCCHHHH
Q psy6263 452 VLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYV--------------GTGYHEVA 517 (913)
Q Consensus 452 L~~~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~l--------------Gs~n~~v~ 517 (913)
+.+++..+|..|--.|.-.. .+...+....|..++.+++.+.+++.+|+..|.-..- ..-+.+.-
T Consensus 10 ~~s~d~~~r~~Ae~~L~~~~-~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~ 88 (462)
T 1ibr_B 10 TVSPDRLELEAAQKFLERAA-VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANAR 88 (462)
T ss_dssp TTCSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHH-hhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHH
Confidence 34556666766666665522 2223455666777776544455666788888776431 11233333
Q ss_pred HH----HHHHHHcCCcCcccccchhhHHHHHHHHHhc-----CC-cccHHHHHHHHhcCC-ChhhhhHHHHHHHHHHhcc
Q psy6263 518 SA----ILQTLIELPVSELQDGHYSRFLPLALAITYL-----GK-KDAIDTTLAALEVLP-DPFRSMAKMMLKMCAYAGS 586 (913)
Q Consensus 518 ~~----lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~-----G~-~e~~~~ll~~L~~~~-~pi~r~~~~~~lglAyaGT 586 (913)
+. +++.+.+. +. .+ +.++-+++-+.. +. .+..+.+++.+.... ++..|.+++.+++--.--.
T Consensus 89 ~~ik~~ll~~l~~~-----~~-~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~ 161 (462)
T 1ibr_B 89 REVKNYVLQTLGTE-----TY-RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161 (462)
T ss_dssp HHHHHHHHHHTTCC-----CS-SS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCC-----Cc-hh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhC
Confidence 33 44443331 12 44 555555544331 12 346666777665533 7888888887776433211
Q ss_pred -CC------HHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHH
Q psy6263 587 -GD------VLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVA 659 (913)
Q Consensus 587 -Gn------~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~ 659 (913)
+. ...++.+++.+.+.. .+..+ |.+++-
T Consensus 162 ~~~~~~~~~~~ll~~l~~~l~~~~--------------------------------------------~~~~v-r~~a~~ 196 (462)
T 1ibr_B 162 DPEQLQDKSNEILTAIIQGMRKEE--------------------------------------------PSNNV-KLAATN 196 (462)
T ss_dssp CGGGTGGGHHHHHHHHHHHHSTTC--------------------------------------------CCHHH-HHHHHH
T ss_pred CchhhHhHHHHHHHHHHHHhCCCC--------------------------------------------CCHHH-HHHHHH
Confidence 11 123344444332110 01344 666666
Q ss_pred HHHHHHhhcCccccc----ccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc------h-hHHHHHHhhccCccHHHH
Q psy6263 660 ALGVAVVALGEEIGS----EMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA------L-NVIDVLNKYSHDLDEEVA 728 (913)
Q Consensus 660 ~Lgiali~~ge~ig~----em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~------~-~vid~L~~~s~D~d~~Vr 728 (913)
+++-.+-...+.... +.....+..++...++.+|.+++-+++-+....+. . .++..+....+|.++.||
T Consensus 197 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~ 276 (462)
T 1ibr_B 197 ALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVA 276 (462)
T ss_dssp HHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 665432111111111 11344555667788999999999998877643332 2 677777777778899999
Q ss_pred HHHHHHHHHhh
Q psy6263 729 HNAIFSMGLVG 739 (913)
Q Consensus 729 ~~AiiALGlV~ 739 (913)
..|+-.++-+.
T Consensus 277 ~~a~~~l~~~~ 287 (462)
T 1ibr_B 277 LQGIEFWSNVC 287 (462)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877666554
No 52
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.51 E-value=1.8 Score=44.41 Aligned_cols=134 Identities=13% Similarity=0.041 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHhhcCcccccccHHHHHHHH---hccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHH
Q psy6263 654 SMQAVAALGVAVVALGEEIGSEMSTRIFGQL---GRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHN 730 (913)
Q Consensus 654 ~~~a~~~Lgiali~~ge~ig~em~~r~~~~L---l~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~ 730 (913)
+..+..++|-.....|..+.+ .+..++..| +.+.++.||.++.-||.-+....+-..+++.|.....+.+..||..
T Consensus 74 ~~~a~~~l~~la~~l~~~~~~-~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~ 152 (242)
T 2qk2_A 74 VAMAGKCLALLAKGLAKRFSN-YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSE 152 (242)
T ss_dssp HHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHH
Confidence 556666777666666665522 333444444 4567889999999999888766666688888888888889999999
Q ss_pred HHHHHHHhhCCCCh-----hHHHHHHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCceeccccc
Q psy6263 731 AIFSMGLVGAGTNN-----ARLATMLRQLAQYH-VKNTGHLFMVRIAQGLTHMGKGTVSLSPFH 788 (913)
Q Consensus 731 AiiALGlV~aGtnn-----~ri~~~Lr~L~~~~-~~d~~~~f~~~iAqGLl~~Gkg~~tLsp~~ 788 (913)
++-.++-+..-.+. +.+..++..|.... +.++.+|-.+.-++|.+..-=|.-.+.|+.
T Consensus 153 ~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 153 TALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL 216 (242)
T ss_dssp HHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 99999997654321 23344444444433 567788888888888887444454466654
No 53
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.39 E-value=5.7 Score=48.72 Aligned_cols=101 Identities=12% Similarity=-0.001 Sum_probs=65.8
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCCh-hH-HH
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNN-AR-LA 748 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn-~r-i~ 748 (913)
...+..|+.+.++.||+.++-+|+=+..++.. ..++..|-++....+..++..|.-|++.+.+|+.. .+ +.
T Consensus 625 l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii 704 (810)
T 3now_A 625 VSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKIL 704 (810)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44556666778999999999999988776432 24677888888778889999999999999997542 11 11
Q ss_pred H---HHHHHHHH-hcCChhHHHHHHHHHHHhhcC
Q psy6263 749 T---MLRQLAQY-HVKNTGHLFMVRIAQGLTHMG 778 (913)
Q Consensus 749 ~---~Lr~L~~~-~~~d~~~~f~~~iAqGLl~~G 778 (913)
+ .+..|... .+.|+..+..+..|++=+..|
T Consensus 705 ~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 705 AIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp TSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 1 22222222 245666655555555444333
No 54
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.35 E-value=0.38 Score=49.47 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcC-CCc-------hhHHHHHHhhccCccH
Q psy6263 654 SMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMS-NPA-------LNVIDVLNKYSHDLDE 725 (913)
Q Consensus 654 ~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as-~~~-------~~vid~L~~~s~D~d~ 725 (913)
|.++..+|.-.+-.. +.+.....+-..++..+|.+|..+.-.|+-+... .|. ..++..|.++..|.+.
T Consensus 115 r~~a~~aL~~~~~~~----~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~ 190 (242)
T 2qk2_A 115 VTALREAIDAIYAST----SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDP 190 (242)
T ss_dssp HHHHHHHHHHHHTTS----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCCh
Confidence 554555544333222 2333344445556678999999999999985433 232 2678888888899999
Q ss_pred HHHHHHHHHHHHhhCCCCh
Q psy6263 726 EVAHNAIFSMGLVGAGTNN 744 (913)
Q Consensus 726 ~Vr~~AiiALGlV~aGtnn 744 (913)
.||..|+-++|.++.--++
T Consensus 191 ~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 191 TVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHcCH
Confidence 9999999999998854444
No 55
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.34 E-value=2.2 Score=48.77 Aligned_cols=290 Identities=12% Similarity=0.032 Sum_probs=143.7
Q ss_pred cccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-HHH
Q psy6263 401 LWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-QEV 479 (913)
Q Consensus 401 ~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e~v 479 (913)
.|+.++|...+++.+.. .+.. -+...+|.++...+ +.+.++.++...+.........-. .++.+|...++ ++.
T Consensus 285 ~g~~~~A~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A 358 (597)
T 2xpi_A 285 EDELRRAEDYLSSINGL-EKSS--DLLLCKADTLFVRS-RFIDVLAITTKILEIDPYNLDVYP--LHLASLHESGEKNKL 358 (597)
T ss_dssp HHHHHHHHHHHHTSTTG-GGCH--HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCCTTHH--HHHHHHHHHTCHHHH
T ss_pred cchHHHHHHHHHHhhcC-CchH--HHHHHHHHHHHHhc-CHHHHHHHHHHHHHcCcccHHHHH--HHHHHHHHhCCHHHH
Confidence 45556666666554432 1222 23334444443222 235677777766543221111112 22333333333 344
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHH
Q psy6263 480 VTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTT 559 (913)
Q Consensus 480 ~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~l 559 (913)
.+.+...+....... .+-..+|.+|.-.++.+-...+++.+.+.. .....-...++.++...|+.+.+...
T Consensus 359 ~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 359 YLISNDLVDRHPEKA----VTWLAVGIYYLCVNKISEARRYFSKSSTMD-----PQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HHHHHHHHHHCTTSH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhhCcccH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 454444443111111 244556777777777766666666555421 11233445667777778888777777
Q ss_pred HHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhch
Q psy6263 560 LAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAAND 639 (913)
Q Consensus 560 l~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (913)
++.+.....+. ......+|.+|...|+.....+++.-+.+...
T Consensus 430 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------------------------------- 472 (597)
T 2xpi_A 430 YTTAARLFQGT--HLPYLFLGMQHMQLGNILLANEYLQSSYALFQ----------------------------------- 472 (597)
T ss_dssp HHHHHHTTTTC--SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-----------------------------------
T ss_pred HHHHHHhCccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------------------
Confidence 77655432211 12335577888888987555555444432110
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccC-----Chh--HHhHhHHHHHHhhcCCCchhH
Q psy6263 640 KKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYG-----EPT--VRRAVPLAIALCSMSNPALNV 712 (913)
Q Consensus 640 ~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~-----~~~--vR~~a~LALgL~~as~~~~~v 712 (913)
++ ..+...+|.++...|+ .+.|.+.+...++.. +|. +.....++-++.-.|+. ..+
T Consensus 473 ----------~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~-~~A 535 (597)
T 2xpi_A 473 ----------YD---PLLLNELGVVAFNKSD---MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY-DAA 535 (597)
T ss_dssp ----------CC---HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH-HHH
T ss_pred ----------CC---hHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH-HHH
Confidence 01 1235567888887775 566788888877642 444 34444444444444443 244
Q ss_pred HHHHHhhc-cCccHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHhcCCh
Q psy6263 713 IDVLNKYS-HDLDEEVAHNAIFSMGLVGAGTNN-ARLATMLRQLAQYHVKNT 762 (913)
Q Consensus 713 id~L~~~s-~D~d~~Vr~~AiiALGlV~aGtnn-~ri~~~Lr~L~~~~~~d~ 762 (913)
++.+.+.. .+++.. .+...+|.+....++ .+....+++..+...+++
T Consensus 536 ~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 536 IDALNQGLLLSTNDA---NVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHHHHHHHHSSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 44444432 234321 244455555555554 234445555444333333
No 56
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.09 E-value=4.4 Score=46.17 Aligned_cols=220 Identities=10% Similarity=0.012 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcC-CChhhhhHHHHH
Q psy6263 500 AAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVL-PDPFRSMAKMML 578 (913)
Q Consensus 500 A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~-~~pi~r~~~~~~ 578 (913)
+-..+|.++.-.++.+-...+++.+.+..+. ...-...++.++...|+.+.+..+++.+... ++.. .....
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~ 378 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPY-----NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA---VTWLA 378 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH---HHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH---HHHHH
Confidence 4456666777777766666666665542111 2223445566667778877777777665432 2211 23345
Q ss_pred HHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHH
Q psy6263 579 KMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAV 658 (913)
Q Consensus 579 lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~ 658 (913)
+|.+|...|+.....+++.-+.+.. + .+ ..+.
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~-~--------------------------------------------~~---~~~~ 410 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMD-P--------------------------------------------QF---GPAW 410 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-T--------------------------------------------TC---HHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-C--------------------------------------------CC---HHHH
Confidence 7788888898755555444332110 0 01 1234
Q ss_pred HHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhc-cCccHHHHHHHHHHHHH
Q psy6263 659 AALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYS-HDLDEEVAHNAIFSMGL 737 (913)
Q Consensus 659 ~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s-~D~d~~Vr~~AiiALGl 737 (913)
..+|.++...|+ .+.|.+.+...++....+......++.+....|.. ..+++.+.+.. .++++. .+...+|.
T Consensus 411 ~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~---~~~~~l~~ 483 (597)
T 2xpi_A 411 IGFAHSFAIEGE---HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI-LLANEYLQSSYALFQYDP---LLLNELGV 483 (597)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCCCCH---HHHHHHHH
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCh---HHHHHHHH
Confidence 456777777665 56678888887765544444444444444444443 23444444332 122221 13344444
Q ss_pred hhCCCCh-hHHHHHHHHHHHHh---cCChhHHHHHHHHHHHhhcCCCce
Q psy6263 738 VGAGTNN-ARLATMLRQLAQYH---VKNTGHLFMVRIAQGLTHMGKGTV 782 (913)
Q Consensus 738 V~aGtnn-~ri~~~Lr~L~~~~---~~d~~~~f~~~iAqGLl~~Gkg~~ 782 (913)
+....++ .+...++++..+.. ..+|...-.+...+|-++.-.|++
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 4444444 23334444443332 225552223333344444434443
No 57
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=92.97 E-value=5.6 Score=40.86 Aligned_cols=262 Identities=11% Similarity=-0.022 Sum_probs=134.7
Q ss_pred hhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCC-C-
Q psy6263 399 IYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTK-R- 476 (913)
Q Consensus 399 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~-~- 476 (913)
...|+.++|+..+.+.+.........=..++.-+...| +.+.++..+...+....... .+...+|.++...+ +
T Consensus 33 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 33 YYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN---KANELFYLSHKLVDLYPSNP--VSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTST--HHHHHHHHHHHHSCSCH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhh---hHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHhhhhH
Confidence 34467777777666655422222111111222222333 23567777777665332222 34556677777766 4
Q ss_pred HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCccc
Q psy6263 477 QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDA 555 (913)
Q Consensus 477 e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~ 555 (913)
++..+.+...+. ++. .. .+-+.+|.++.-.++.+-+...++.+....+ . .......+|..+...|+-+.
T Consensus 108 ~~A~~~~~~a~~~~~~-~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 108 EHARRYLSKATTLEKT-YG----PAWIAYGHSFAVESEHDQAMAAYFTAAQLMK----G-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CT----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT----T-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCc-cH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhcc----c-cHHHHHHHHHHHHHHhhHHH
Confidence 457777766664 322 22 2345677777777776665555555554211 1 12223335666666777777
Q ss_pred HHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchh
Q psy6263 556 IDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAA 635 (913)
Q Consensus 556 ~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (913)
+...++......... ......+|..|...|+.......+.-+........ ...
T Consensus 178 A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------------------~~~----- 230 (330)
T 3hym_B 178 AERFFSQALSIAPED--PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG--------------------NEV----- 230 (330)
T ss_dssp HHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS--------------------CSC-----
T ss_pred HHHHHHHHHHhCCCC--hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc--------------------ccc-----
Confidence 777777665543221 23345678888999987544443333322110000 000
Q ss_pred hhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHH
Q psy6263 636 AANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDV 715 (913)
Q Consensus 636 ~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~ 715 (913)
..+. ...+...+|.++...|+ .+.|...+...++....+.....-+|......|+ ...+++.
T Consensus 231 ------------~~~~--~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~ 292 (330)
T 3hym_B 231 ------------TVDK--WEPLLNNLGHVCRKLKK---YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN-FENAVDY 292 (330)
T ss_dssp ------------TTTT--CCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred ------------cccH--HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc-HHHHHHH
Confidence 0000 12345678888888875 4667888888776544333333333333333333 2356666
Q ss_pred HHhhc
Q psy6263 716 LNKYS 720 (913)
Q Consensus 716 L~~~s 720 (913)
+.+..
T Consensus 293 ~~~al 297 (330)
T 3hym_B 293 FHTAL 297 (330)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 66654
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=92.78 E-value=16 Score=41.34 Aligned_cols=112 Identities=10% Similarity=0.029 Sum_probs=67.6
Q ss_pred ccccccCchhhHHHHHHHHHHHHhcCCCCCc------hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccC-CCH-HH---
Q psy6263 411 IDKYLYTSEDYIKAGALLALGIVNCGVRNEC------DPALALLSDYVLNDSITLRIGAVLGLGLAYAGT-KRQ-EV--- 479 (913)
Q Consensus 411 l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~------d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs-~~e-~v--- 479 (913)
+-.+|.++++..+..|+.+++-+..+.. +. ..++..|...|.+.++.++..|+-+|+-+..++ .+. .+
T Consensus 7 lv~~L~s~~~~~q~~A~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~ 85 (457)
T 1xm9_A 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85 (457)
T ss_dssp HHHHHHSSCTHHHHHHHHHHHHHTSSCS-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 3345556666777777777777653321 11 123456677788888889999999999877652 121 12
Q ss_pred --HHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHH-----HHHHHHHHH
Q psy6263 480 --VTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHE-----VASAILQTL 524 (913)
Q Consensus 480 --~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~-----v~~~lL~~l 524 (913)
...|...|.++. +.++..-|+.+|+-+-.+..+.+ ++..+++.+
T Consensus 86 G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 86 NGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136 (457)
T ss_dssp TCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence 345666665222 34566678888887776644443 334455555
No 59
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.52 E-value=1.3 Score=46.20 Aligned_cols=77 Identities=9% Similarity=0.048 Sum_probs=56.2
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCC----------chhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHH
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNP----------ALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARL 747 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~----------~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri 747 (913)
+..+-..++..+|.+|.++.-+|+-+....+ ...++..|.++.+|++..||..|+-+||.++.=-+|..+
T Consensus 148 l~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~ 227 (249)
T 2qk1_A 148 LKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF 227 (249)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 3333344566799999999888887774333 257889999999999999999999999998843345445
Q ss_pred HHHHHHH
Q psy6263 748 ATMLRQL 754 (913)
Q Consensus 748 ~~~Lr~L 754 (913)
..++..|
T Consensus 228 ~p~l~~L 234 (249)
T 2qk1_A 228 VKTLEHL 234 (249)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 5554443
No 60
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=92.48 E-value=0.86 Score=49.20 Aligned_cols=66 Identities=3% Similarity=0.019 Sum_probs=54.7
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCC
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGT 742 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGt 742 (913)
+...+-++++.+++.+|+.++.||+=++.+++. ..++..|-++....+..|+..|.-|++-+..+.
T Consensus 168 gi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 168 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 455677788889999999999999988877653 367888888887888899999999999888773
No 61
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=92.38 E-value=15 Score=40.29 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=54.2
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCCh
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNN 744 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn 744 (913)
...+-.|++.++..++..++-||+-++.+++. ..++..|-++.+..+..++.+|.-||.-+..++.+
T Consensus 265 i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 34455667788999999999999999877653 26688888888888999999999999999988664
No 62
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=91.97 E-value=10 Score=39.82 Aligned_cols=90 Identities=17% Similarity=0.101 Sum_probs=41.1
Q ss_pred HHHHHHHHHhccCCC-HHHHHHHHHhhcCC-CC-cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchh
Q psy6263 462 GAVLGLGLAYAGTKR-QEVVTLLLPVLTDR-KS-TPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYS 538 (913)
Q Consensus 462 gA~LGLGlay~Gs~~-e~v~e~L~~~L~d~-~~-~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~ 538 (913)
-+...++..+.+..+ +.+.+.+...+..+ .. +. .+-+.+|.++.-.++.+-....++ . + . ...
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~----~~~~~la~~~~~~g~~~~Al~~l~---~-~-----~-~~~ 131 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNT----TFLLMAASIYFYDQNPDAALRTLH---Q-G-----D-SLE 131 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH----HHHHHHHHHHHHTTCHHHHHHHHT---T-C-----C-SHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH----HHHHHHHHHHHHCCCHHHHHHHHh---C-C-----C-CHH
Confidence 344445555555544 34555555554321 11 11 234566666666665544333222 1 0 1 122
Q ss_pred hHHHHHHHHHhcCCcccHHHHHHHHhc
Q psy6263 539 RFLPLALAITYLGKKDAIDTTLAALEV 565 (913)
Q Consensus 539 r~~~lgLgLl~~G~~e~~~~ll~~L~~ 565 (913)
-...+|..+.-.|+.+.+...++.+..
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 223334445556666666665555443
No 63
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=91.28 E-value=18 Score=38.69 Aligned_cols=272 Identities=11% Similarity=0.042 Sum_probs=141.7
Q ss_pred hhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-H
Q psy6263 399 IYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-Q 477 (913)
Q Consensus 399 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e 477 (913)
...|+.++|+..+.+-+....... .+...+|.++...++ .+.++..+...+....... .+...+|.++...++ +
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~ 152 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPDFI--DGYINLAAALVAAGD-MEGAVQAYVSALQYNPDLY--CVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHSC-SSHHHHHHHHHHHHCTTCT--HHHHHHHHHHHTTSCHH
T ss_pred HHCCCHHHHHHHHHHHHHcCcchH--HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHccCHH
Confidence 345677777776665543222222 244455555432222 2457777666654322211 233456777776666 3
Q ss_pred HHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccH
Q psy6263 478 EVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAI 556 (913)
Q Consensus 478 ~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~ 556 (913)
+..+.+...+. ++.. . .+-..+|.++...++.+.....++.+.+.. .+...-...+|..+.-.|.-+.+
T Consensus 153 ~A~~~~~~al~~~p~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 153 EAKACYLKAIETQPNF-A----VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-----PNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHHHHHHHHHHCTTC-H----HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHHHcCCHHHH
Confidence 55555555554 3221 1 345678888888888766666665555421 11222233344444445555555
Q ss_pred HHHHHH-HhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchh
Q psy6263 557 DTTLAA-LEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAA 635 (913)
Q Consensus 557 ~~ll~~-L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (913)
...++. +...++.. .....+|.+|...|+.....+.+.-+.+..
T Consensus 223 ~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------- 267 (388)
T 1w3b_A 223 VAAYLRALSLSPNHA---VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-------------------------------- 267 (388)
T ss_dssp HHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------------------------------
T ss_pred HHHHHHHHhhCcCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------------------------
Confidence 444443 33333321 233567889999998754444443332211
Q ss_pred hhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc-hhHHH
Q psy6263 636 AANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA-LNVID 714 (913)
Q Consensus 636 ~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~-~~vid 714 (913)
++ ...+...+|.++...|+ .+.+...+...++....+..... .+|.++...++ ..+++
T Consensus 268 --------------p~--~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~--~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 268 --------------PH--FPDAYCNLANALKEKGS---VAEAEDCYNTALRLCPTHADSLN--NLANIKREQGNIEEAVR 326 (388)
T ss_dssp --------------SS--CHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHTTTCHHHHHH
T ss_pred --------------CC--CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCcccHHHHH--HHHHHHHHcCCHHHHHH
Confidence 00 11235567888888875 46678888888776544444333 34444444333 35666
Q ss_pred HHHhhcc-CccHHHHHHHHHHHHHhhCCCCh
Q psy6263 715 VLNKYSH-DLDEEVAHNAIFSMGLVGAGTNN 744 (913)
Q Consensus 715 ~L~~~s~-D~d~~Vr~~AiiALGlV~aGtnn 744 (913)
.+.+... +++.. .+...+|.+....++
T Consensus 327 ~~~~al~~~p~~~---~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 327 LYRKALEVFPEFA---AAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHTTSCTTCH---HHHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCcH---HHHHHHHHHHHHcCC
Confidence 6666543 44332 244556666555554
No 64
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=91.14 E-value=24 Score=41.51 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=54.5
Q ss_pred HHHHHHHh-ccCChhHHhHhHHHHHHhhcCCCc-----------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChh
Q psy6263 678 TRIFGQLG-RYGEPTVRRAVPLAIALCSMSNPA-----------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNA 745 (913)
Q Consensus 678 ~r~~~~Ll-~~~~~~vR~~a~LALgL~~as~~~-----------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ 745 (913)
++.+-.|+ ...++.++..++-||.=+++|+.. ...+..|-++.+..+..|...|+-||+-+..+..|-
T Consensus 310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~ 389 (584)
T 3l6x_A 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK 389 (584)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH
Confidence 34444455 456899999999999999988621 256788888888889999999999999999988874
Q ss_pred H
Q psy6263 746 R 746 (913)
Q Consensus 746 r 746 (913)
+
T Consensus 390 ~ 390 (584)
T 3l6x_A 390 E 390 (584)
T ss_dssp H
T ss_pred H
Confidence 3
No 65
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=91.08 E-value=16 Score=37.77 Aligned_cols=185 Identities=13% Similarity=0.046 Sum_probs=95.6
Q ss_pred hhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCC---HHHHHHHH----------H
Q psy6263 399 IYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDS---ITLRIGAV----------L 465 (913)
Q Consensus 399 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~---~~v~~gA~----------L 465 (913)
...|+.++|+..+.+.+....... .+...+|.++...+ +.+.++..+...+.... .....-.. .
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALKMDFT--AARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLR 124 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHH
Confidence 445677777777766554222222 55666666664332 23567777777766433 22222211 2
Q ss_pred HHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHH
Q psy6263 466 GLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPL 543 (913)
Q Consensus 466 GLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~l 543 (913)
.+|.++...++ +++.+.+...+. ++. .. .+-..+|.++.-.++.+-....++.+.+..+ . ...-...+
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~-~~~~~~~l 194 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCVW-DA----ELRELRAECFIKEGEPRKAISDLKAASKLKS----D-NTEAFYKI 194 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS----C-CHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC-ch----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----C-CHHHHHHH
Confidence 23566666665 355555555553 222 22 3456677777777776666666665554211 1 22233344
Q ss_pred HHHHHhcCCcccHHHHHHHHhc-CCChhh---hh------HHHHHHHHHHhccCCHHHHHHHH
Q psy6263 544 ALAITYLGKKDAIDTTLAALEV-LPDPFR---SM------AKMMLKMCAYAGSGDVLVVQEFL 596 (913)
Q Consensus 544 gLgLl~~G~~e~~~~ll~~L~~-~~~pi~---r~------~~~~~lglAyaGTGn~~~Iq~LL 596 (913)
|..+...|.-+.+...++.... .++... .+ ...+..|.+|...|+.......+
T Consensus 195 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 257 (359)
T 3ieg_A 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555556666666555555443 222211 11 11234577778888764443333
No 66
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=91.02 E-value=6.5 Score=40.39 Aligned_cols=229 Identities=9% Similarity=-0.000 Sum_probs=130.5
Q ss_pred hhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-H
Q psy6263 399 IYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-Q 477 (913)
Q Consensus 399 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e 477 (913)
...|+.++++..+.+.+..... ...+.+.+|.++....++.+.+...+...+....... -+...+|.+|...++ +
T Consensus 67 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 67 VELNKANELFYLSHKLVDLYPS--NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG--PAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT--STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT--HHHHHHHHHHHHHTCHH
T ss_pred HHhhhHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHccCHH
Confidence 4567777787777766643222 2346677777776555345678888877765432222 234566677666666 4
Q ss_pred HHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccH
Q psy6263 478 EVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAI 556 (913)
Q Consensus 478 ~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~ 556 (913)
++.+.+...+. ++.. . .+-+.+|.++.-.++.+.....++.+.+..+ . ...-...+|..+...|+-+.+
T Consensus 143 ~A~~~~~~a~~~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----~-~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGC-H----LPMLYIGLEYGLTNNSKLAERFFSQALSIAP----E-DPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHHHHHHHHHHHTTTC-S----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT----T-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcccc-H----HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC----C-ChHHHHHHHHHHHHcccHHHH
Confidence 55666655554 2221 1 2344578888888887777777776665321 1 222333445555566766666
Q ss_pred HHHHHHHhcC----CCh---hhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCC
Q psy6263 557 DTTLAALEVL----PDP---FRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGST 629 (913)
Q Consensus 557 ~~ll~~L~~~----~~p---i~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (913)
...++..... .++ -........+|.+|...|+.....+.+.-+.+...
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~------------------------- 267 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP------------------------- 267 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------------
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-------------------------
Confidence 6665554432 111 11123456788889999987544444333322110
Q ss_pred CCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhH
Q psy6263 630 ESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTV 692 (913)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~v 692 (913)
+ ...+...+|.++...|+ .+.+...+.+.++....+.
T Consensus 268 --------------------~---~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 268 --------------------Q---NASTYSAIGYIHSLMGN---FENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp --------------------T---CSHHHHHHHHHHHHHTC---HHHHHHHHHTTTTTCSCCH
T ss_pred --------------------c---chHHHHHHHHHHHHhcc---HHHHHHHHHHHHccCCCch
Confidence 0 11235567888888875 5668888888877543333
No 67
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=90.79 E-value=22 Score=39.09 Aligned_cols=123 Identities=7% Similarity=-0.049 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccch
Q psy6263 460 RIGAVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHY 537 (913)
Q Consensus 460 ~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i 537 (913)
..-+...+|.+|...++ +++.+.+...+. ++. . .+-+.+|.++.-.++.+-....++.+....+ . ..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--~~ 304 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--V----NSYIYMALIMADRNDSTEYYNYFDKALKLDS---N--NS 304 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--H----HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT---T--CT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--H----HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc---C--CH
Confidence 34455566666665555 344444444443 222 1 2344555556555544333333333333111 0 11
Q ss_pred hhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHH
Q psy6263 538 SRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEF 595 (913)
Q Consensus 538 ~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~L 595 (913)
.-...+|..+...|.-+.+...++......... ......+|.+|...|+.......
T Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 305 SVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN--IFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC--SHHHHHHHHHTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHHcCCHHHHHHH
Confidence 122333444444555555555554443321111 12334556666667765433333
No 68
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=90.34 E-value=23 Score=38.38 Aligned_cols=313 Identities=14% Similarity=0.038 Sum_probs=157.3
Q ss_pred hhhhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC
Q psy6263 397 GLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR 476 (913)
Q Consensus 397 GlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~ 476 (913)
.....|+.++|+..+.+.+...... .-+.+.+|.++.... +.+.++..+...+...... .-+...+|.+|...++
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDGDPDN--YIAYYRRATVFLAMG-KSKAALPDLTKVIQLKMDF--TAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCC
Confidence 3445677778887777665422222 456666666665433 3467788887776543222 2345566777776666
Q ss_pred -HHHHHHHHHhhcCCCCcH---HHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHH
Q psy6263 477 -QEVVTLLLPVLTDRKSTP---EVVA--------FAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLA 544 (913)
Q Consensus 477 -e~v~e~L~~~L~d~~~~~---ev~~--------~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lg 544 (913)
+++.+.+...+.-..... +... ..-+.+|.++...++.+.+...++.+.+..+ . ...-...+|
T Consensus 110 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~-~~~~~~~l~ 184 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV----W-DAELRELRA 184 (450)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----T-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C-ChHHHHHHH
Confidence 455666666554211111 1100 1234567778777777666666665554211 1 222334455
Q ss_pred HHHHhcCCcccHHHHHHHHhcC-CChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccc
Q psy6263 545 LAITYLGKKDAIDTTLAALEVL-PDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASA 623 (913)
Q Consensus 545 LgLl~~G~~e~~~~ll~~L~~~-~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (913)
..+...|+-+.+...++..... ++. ......+|.+|...|+.......+.-+.... +..
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~---------------- 244 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLKNDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDH---------------- 244 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC----------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCh----------------
Confidence 5666677777776666655432 221 2334567888999998754444333332111 000
Q ss_pred cCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCC--hhHHhHhHHHHH
Q psy6263 624 TAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGE--PTVRRAVPLAIA 701 (913)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~--~~vR~~a~LALg 701 (913)
...+.. -..+........+|.++...|+ .+.+...+...+.... +..+..+-..+|
T Consensus 245 ------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 245 ------------------KRCFAH-YKQVKKLNKLIESAEELIRDGR---YTDATSKYESVMKTEPSIAEYTVRSKERIC 302 (450)
T ss_dssp ------------------HHHHHH-HHHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred ------------------HHHHHH-HHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 000000 0000011122344777777775 4567788888776432 333333444455
Q ss_pred HhhcCCCc-hhHHHHHHhhc-cCccHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHhcCChhH
Q psy6263 702 LCSMSNPA-LNVIDVLNKYS-HDLDEEVAHNAIFSMGLVGAGTNNA-RLATMLRQLAQYHVKNTGH 764 (913)
Q Consensus 702 L~~as~~~-~~vid~L~~~s-~D~d~~Vr~~AiiALGlV~aGtnn~-ri~~~Lr~L~~~~~~d~~~ 764 (913)
.++...++ ..+++.+.+.. .+++.. .+...+|.+....++. +-...+++..+....++..
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQMEPDNV---NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 55543332 35555555543 244321 3455566666555552 3334445444333344444
No 69
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=89.97 E-value=17 Score=37.74 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHhhcCc---cccc---ccHHHHHHHHhccCChhHHhHhHHHHHHhhc
Q psy6263 654 SMQAVAALGVAVVALGE---EIGS---EMSTRIFGQLGRYGEPTVRRAVPLAIALCSM 705 (913)
Q Consensus 654 ~~~a~~~Lgiali~~ge---~ig~---em~~r~~~~Ll~~~~~~vR~~a~LALgL~~a 705 (913)
+.++...|+-++-..+. .+.+ ......+..++.+.++.||.++.-+||.++.
T Consensus 163 k~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 163 RMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 66666677777766552 1111 2344556777788999999999999999983
No 70
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=89.80 E-value=25 Score=38.05 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHHH
Q psy6263 425 GALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAAV 502 (913)
Q Consensus 425 GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~l 502 (913)
-+++.+|..+...+ +.+.++..+...+...... ..+...+|.+|...++ +++.+.+...+. ++. .. .+-+
T Consensus 27 ~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~ 98 (450)
T 2y4t_A 27 EKHLELGKKLLAAG-QLADALSQFHAAVDGDPDN--YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FT----AARL 98 (450)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH----HHHH
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cH----HHHH
Confidence 44555555443322 2345666666665432222 3455566666665555 345555555443 222 11 3445
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHc
Q psy6263 503 AASLIYVGTGYHEVASAILQTLIE 526 (913)
Q Consensus 503 aLGLi~lGs~n~~v~~~lL~~l~~ 526 (913)
.+|.++.-.++.+-+...++.+.+
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566666666666555555555554
No 71
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=89.61 E-value=18 Score=37.87 Aligned_cols=265 Identities=13% Similarity=0.056 Sum_probs=123.1
Q ss_pred ccccccchhhHHHHHHhhhhhcccCCCccc-ccccccc--CchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCC
Q psy6263 380 WMYKNKQHGMLSAAASLGLIYLWDVDGGLT-PIDKYLY--TSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDS 456 (913)
Q Consensus 380 wl~k~~~~~k~sA~aslGlI~~~~~~~~l~-~l~~yL~--s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~ 456 (913)
|-.-...|..+.....-.....++.++++. .+.+-+. ..++....-+++.+|.++...+ +.+.++..+...+....
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p 95 (368)
T 1fch_A 17 WDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG-DLPNAVLLFEAAVQQDP 95 (368)
T ss_dssp -----------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTT-CHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC
Confidence 333334454443332222223456777766 4443332 2334444556667777765443 34678888888776433
Q ss_pred HHHHHHHHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccc
Q psy6263 457 ITLRIGAVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQD 534 (913)
Q Consensus 457 ~~v~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~ 534 (913)
... .+...+|.+|...++ +++.+.+...+. ++. .. .+-..+|.++...++.+.....++.+....+...
T Consensus 96 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 166 (368)
T 1fch_A 96 KHM--EAWQYLGTTQAENEQELLAISALRRCLELKPD-NQ----TALMALAVSFTNESLQRQACEILRDWLRYTPAYA-- 166 (368)
T ss_dssp TCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG--
T ss_pred CCH--HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--
Confidence 222 355577777777776 456666666554 322 22 3566788888888887666666665554321111
Q ss_pred cchhhHH-----------H-HHHHHH-hcCCcccHHHHHHHHhc-CCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhh
Q psy6263 535 GHYSRFL-----------P-LALAIT-YLGKKDAIDTTLAALEV-LPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCS 600 (913)
Q Consensus 535 e~i~r~~-----------~-lgLgLl-~~G~~e~~~~ll~~L~~-~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~ 600 (913)
...... . ..+|.+ ..|+-+.+...++.... .++. ........+|.+|...|+.......+.-+.
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 167 -HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp -GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111100 0 012222 33444455444444433 2221 022334567888899998754444333332
Q ss_pred ccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHH
Q psy6263 601 EHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRI 680 (913)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~ 680 (913)
... ++ ...+...+|.++...|+ .+.+...
T Consensus 245 ~~~----------------------------------------------~~--~~~~~~~l~~~~~~~g~---~~~A~~~ 273 (368)
T 1fch_A 245 SVR----------------------------------------------PN--DYLLWNKLGATLANGNQ---SEEAVAA 273 (368)
T ss_dssp HHC----------------------------------------------TT--CHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred HhC----------------------------------------------cC--CHHHHHHHHHHHHHcCC---HHHHHHH
Confidence 110 00 11245567888888875 5667888
Q ss_pred HHHHhccCChhHHhHhHHHHHHhhcCC
Q psy6263 681 FGQLGRYGEPTVRRAVPLAIALCSMSN 707 (913)
Q Consensus 681 ~~~Ll~~~~~~vR~~a~LALgL~~as~ 707 (913)
+.+.++...........+|......|.
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 888877544444333333433333444
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=89.55 E-value=11 Score=38.27 Aligned_cols=196 Identities=15% Similarity=0.025 Sum_probs=101.9
Q ss_pred hhhcccCCCcccccccccc--CchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhc----CCCHHHHHHHHHHHHHHh
Q psy6263 398 LIYLWDVDGGLTPIDKYLY--TSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVL----NDSITLRIGAVLGLGLAY 471 (913)
Q Consensus 398 lI~~~~~~~~l~~l~~yL~--s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~----~~~~~v~~gA~LGLGlay 471 (913)
....|+.++|+..+.+-+. ..++...+-++..+|.++...++ .+.++..+...+. ..+.....-+...+|.+|
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD-YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 3445677777776666543 23445556778888888764433 3566666665443 233455567777888888
Q ss_pred ccCCCH-HHHHHHHHhhc---CCCCcHHHHHHHHHHHHHHHhcCCC--------------------HHHHHHHHHHHHcC
Q psy6263 472 AGTKRQ-EVVTLLLPVLT---DRKSTPEVVAFAAVAASLIYVGTGY--------------------HEVASAILQTLIEL 527 (913)
Q Consensus 472 ~Gs~~e-~v~e~L~~~L~---d~~~~~ev~~~A~laLGLi~lGs~n--------------------~~v~~~lL~~l~~~ 527 (913)
.-.++- +..+.+...+. ... .......+-..+|.++...++ .+.....++...+.
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 877763 44444444332 111 112223456677777776665 33222222222110
Q ss_pred CcCcccccc--hhhHHHHHHHHHhcCCcccHHHHHHHH----hcCCChhhhhHHHHHHHHHHhccCCHHHHHHHH
Q psy6263 528 PVSELQDGH--YSRFLPLALAITYLGKKDAIDTTLAAL----EVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFL 596 (913)
Q Consensus 528 ~~~~~~~e~--i~r~~~lgLgLl~~G~~e~~~~ll~~L----~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LL 596 (913)
.. ...+.. ..-...+|..+...|+-+.+...++.. ....++.........+|..|...|+.....+.+
T Consensus 173 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 173 VT-ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HH-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00 011101 111223344444456655555544433 233445444455677888889999875444433
No 73
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=88.89 E-value=42 Score=39.48 Aligned_cols=115 Identities=15% Similarity=0.039 Sum_probs=62.9
Q ss_pred HHHHHHhhhhhcc------cCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCc-----hhHHHHHHHhhcCCCHH
Q psy6263 390 LSAAASLGLIYLW------DVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNEC-----DPALALLSDYVLNDSIT 458 (913)
Q Consensus 390 ~sA~aslGlI~~~------~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~-----d~~l~lL~~~L~~~~~~ 458 (913)
-++.+||.-++.. -.+.++..|-..|.++++..+.-|+.+|..+..+...-. ..++..|...|.+.+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~ 105 (584)
T 3l6x_A 26 RGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKE 105 (584)
T ss_dssp --------------CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHH
T ss_pred cchHHHHHHHHhcCCCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHH
Confidence 3666777776652 123456666677778888888888888887765421100 12456677788889999
Q ss_pred HHHHHHHHHHHHhccCC--CH------HHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q psy6263 459 LRIGAVLGLGLAYAGTK--RQ------EVVTLLLPVLTDRKSTPEVVAFAAVAAS 505 (913)
Q Consensus 459 v~~gA~LGLGlay~Gs~--~e------~v~e~L~~~L~d~~~~~ev~~~A~laLG 505 (913)
++.-|+-+|+-+..|.. +. .....|...|.... +.++...|+-+|.
T Consensus 106 vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~-~~~~~e~aa~aL~ 159 (584)
T 3l6x_A 106 VHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR-DMDLTEVITGTLW 159 (584)
T ss_dssp HHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 99999999999877632 21 13455666665321 2333334444444
No 74
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=88.40 E-value=11 Score=44.58 Aligned_cols=103 Identities=15% Similarity=0.004 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcccCcccccccccCCcccccccchhhHHHHHHhhhhhcccCC-Cccccccccc--cCchhhHHHHHHHH
Q psy6263 353 LASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVD-GGLTPIDKYL--YTSEDYIKAGALLA 429 (913)
Q Consensus 353 lA~~~~naf~naG~~~D~~l~~~~~~~wl~k~~~~~k~sA~aslGlI~~~~~~-~~l~~l~~yL--~s~~~~~k~GAlla 429 (913)
++.-++|.|.+- +. ..+...+..|.-++|-|..-+.- .-...+.+.+ .+.++|+|--|+++
T Consensus 108 ~~~L~iN~l~kD-------l~---------~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~a 171 (621)
T 2vgl_A 108 LIRLINNAIKND-------LA---------SRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALC 171 (621)
T ss_dssp HHHHHHHHHHHH-------HH---------SCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------cC---------CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 455666777655 22 22334467777778877432211 1122334556 66789999999999
Q ss_pred HHHHhcCCCCCch--hHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy6263 430 LGIVNCGVRNECD--PALALLSDYVLNDSITLRIGAVLGLGLAY 471 (913)
Q Consensus 430 LGLi~aG~~~e~d--~~l~lL~~~L~~~~~~v~~gA~LGLGlay 471 (913)
+.-++.-..+-.. ...+.|...|.++++.++.+|+..++-+.
T Consensus 172 l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 172 LLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 9888763222122 46778888888888888888887777654
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=88.17 E-value=18 Score=38.81 Aligned_cols=195 Identities=10% Similarity=-0.000 Sum_probs=108.2
Q ss_pred ccCCCcccccccccc----CchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhc----CCC-HHHHHHHHHHHHHHhc
Q psy6263 402 WDVDGGLTPIDKYLY----TSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVL----NDS-ITLRIGAVLGLGLAYA 472 (913)
Q Consensus 402 ~~~~~~l~~l~~yL~----s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~----~~~-~~v~~gA~LGLGlay~ 472 (913)
|+.++|+..+.+-+. .+++...+-+...+|.++...++ .+.++..+..-+. ..+ ..-...+...||.+|.
T Consensus 117 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ-TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 444444444433322 23456678888899988865433 4567776665543 222 4555678889999998
Q ss_pred cCCCH-HHHHHHHHhhc---CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHH
Q psy6263 473 GTKRQ-EVVTLLLPVLT---DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAIT 548 (913)
Q Consensus 473 Gs~~e-~v~e~L~~~L~---d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl 548 (913)
..++- ++.+.+...+. ... .......+-..||.++...++.+-+...++.+.+-.. ...+.+....+-..+|.+
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEK-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE-ESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCGGGHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-hhccchhHHHHHHHHHHH
Confidence 88774 45555544442 111 1222335677899999999987665554444433100 001101112222234555
Q ss_pred h--cCCcccHHHHHHHHh----cCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhh
Q psy6263 549 Y--LGKKDAIDTTLAALE----VLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCS 600 (913)
Q Consensus 549 ~--~G~~e~~~~ll~~L~----~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~ 600 (913)
+ .|+-+.+...++... ...+|..... ...+|..|...|+...+++-+.++.
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~al~~~~ 330 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDEEAIQGFFDFLE 330 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 5 455455555444332 3345543333 4568899999998766666666664
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=87.78 E-value=5.5 Score=44.12 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=16.7
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCCch--hHHHHHHhhccCccHHHHHHHHHHH
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL--NVIDVLNKYSHDLDEEVAHNAIFSM 735 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~--~vid~L~~~s~D~d~~Vr~~AiiAL 735 (913)
...++.++...++.+|+.|-=.|..+....|.. ..-..+..+.+|++..++.-|+..|
T Consensus 289 ~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 289 VSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp CCTHHHHHHSSSSSSHHHHHHCC-------------------------------------
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 445667777888888887765555555555543 2334455566678877766665544
No 77
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=87.71 E-value=16 Score=39.10 Aligned_cols=205 Identities=16% Similarity=-0.024 Sum_probs=106.4
Q ss_pred hHHHHHHhhh--hhcccCCCcccccccccc--CchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhc----CCCHHHH
Q psy6263 389 MLSAAASLGL--IYLWDVDGGLTPIDKYLY--TSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVL----NDSITLR 460 (913)
Q Consensus 389 k~sA~aslGl--I~~~~~~~~l~~l~~yL~--s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~----~~~~~v~ 460 (913)
...+...+|. ...|+.++|+..+.+-+. ..+....+-++..+|.++...+ +.+.++..+...+. ..+....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG-DYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHccCchHH
Confidence 3444444444 446777788777766554 3344556678888888876432 34567776665543 2334556
Q ss_pred HHHHHHHHHHhccCCCH-HHHHHHHHhhc---CCCCcHHHHHHHHHHHHHHHhcCCC-----------------HHHHHH
Q psy6263 461 IGAVLGLGLAYAGTKRQ-EVVTLLLPVLT---DRKSTPEVVAFAAVAASLIYVGTGY-----------------HEVASA 519 (913)
Q Consensus 461 ~gA~LGLGlay~Gs~~e-~v~e~L~~~L~---d~~~~~ev~~~A~laLGLi~lGs~n-----------------~~v~~~ 519 (913)
.-+...+|.+|.-.++- +..+.+...+. ..... .....+-..+|.++...++ .+.+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR-LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 67778888888877773 44444443332 11111 1223466677777777665 333222
Q ss_pred HHHHHHcCCcCcccccchhhHHHHHHHHHh--cCCcccHHHHHHHHh----cCCChhhhhHHHHHHHHHHhccCCHHHHH
Q psy6263 520 ILQTLIELPVSELQDGHYSRFLPLALAITY--LGKKDAIDTTLAALE----VLPDPFRSMAKMMLKMCAYAGSGDVLVVQ 593 (913)
Q Consensus 520 lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~--~G~~e~~~~ll~~L~----~~~~pi~r~~~~~~lglAyaGTGn~~~Iq 593 (913)
.++...+... ...+......+-..+|.++ .|+-+.+...++... ...++.........+|.+|...|+.....
T Consensus 205 ~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 205 FYQENLKLMR-DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 2222221000 0111011111222344444 555455544444332 23444444445677888999999864444
Q ss_pred HHH
Q psy6263 594 EFL 596 (913)
Q Consensus 594 ~LL 596 (913)
+.+
T Consensus 284 ~~~ 286 (411)
T 4a1s_A 284 EHY 286 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 78
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=87.67 E-value=19 Score=35.64 Aligned_cols=14 Identities=7% Similarity=-0.102 Sum_probs=6.0
Q ss_pred HHHHHHHhcCCCHH
Q psy6263 502 VAASLIYVGTGYHE 515 (913)
Q Consensus 502 laLGLi~lGs~n~~ 515 (913)
+.+|.++...++.+
T Consensus 43 ~~lg~~~~~~g~~~ 56 (217)
T 2pl2_A 43 YWLARTQLKLGLVN 56 (217)
T ss_dssp HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHH
Confidence 34444444444433
No 79
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=87.57 E-value=23 Score=38.92 Aligned_cols=117 Identities=14% Similarity=0.038 Sum_probs=67.7
Q ss_pred HHHHHHHHhccCCh----hHHhHhHHHHHHhhc---CCCc-------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCC
Q psy6263 677 STRIFGQLGRYGEP----TVRRAVPLAIALCSM---SNPA-------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGT 742 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~----~vR~~a~LALgL~~a---s~~~-------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGt 742 (913)
+...+-.|+++.++ .++..++-+|.-++. +++. ..++..|-++..+.+..++.+|.-+|+-+..|+
T Consensus 215 ai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 294 (354)
T 3nmw_A 215 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 294 (354)
T ss_dssp HHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred cHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC
Confidence 34455566666654 377777777766654 4442 246777888887888999999999999998775
Q ss_pred ChhH--HH--HHHHHHHHH-hcCChhHHHHHHHHHHHhhcCCCceecccccCCCCCCChHH
Q psy6263 743 NNAR--LA--TMLRQLAQY-HVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVA 798 (913)
Q Consensus 743 nn~r--i~--~~Lr~L~~~-~~~d~~~~f~~~iAqGLl~~Gkg~~tLsp~~sd~~~~~~~a 798 (913)
.+-+ +. ..+..|... ..+++..+-.+.-|+.-+..+.... +.+..+++|.+
T Consensus 295 ~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~-----~~~~~~~~~~~ 350 (354)
T 3nmw_A 295 PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK-----YKDANIMSPGS 350 (354)
T ss_dssp HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG-----GC---------
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH-----HhhhcccCCcC
Confidence 4322 10 111222221 2567777888888888777763332 34556666655
No 80
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=86.89 E-value=30 Score=35.53 Aligned_cols=28 Identities=7% Similarity=0.018 Sum_probs=15.7
Q ss_pred HHHHHHHHhhcCcccccccHHHHHHHHhccC
Q psy6263 658 VAALGVAVVALGEEIGSEMSTRIFGQLGRYG 688 (913)
Q Consensus 658 ~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~ 688 (913)
...+|.++...|+ .+.+...+...++..
T Consensus 157 ~~~~~~~~~~~~~---~~~A~~~~~~~~~~~ 184 (359)
T 3ieg_A 157 RELRAECFIKEGE---PRKAISDLKAASKLK 184 (359)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHHhC
Confidence 3445666666654 345666666666543
No 81
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=86.74 E-value=22 Score=37.26 Aligned_cols=179 Identities=11% Similarity=-0.012 Sum_probs=98.5
Q ss_pred HhhhhhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCC-C-HHHHHHHHHHHHHHhc
Q psy6263 395 SLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLND-S-ITLRIGAVLGLGLAYA 472 (913)
Q Consensus 395 slGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~-~-~~v~~gA~LGLGlay~ 472 (913)
+-..+..|+.+.++..+.+ .+.+ ..-++..++..+.+.. +.+.++..+...+... + ... .+.+.+|.+|.
T Consensus 41 ~r~yi~~g~~~~al~~~~~---~~~~--~~~a~~~la~~~~~~~-~~~~A~~~l~~ll~~~~~P~~~--~~~~~la~~~~ 112 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKP---SSAP--ELQAVRMFAEYLASHS-RRDAIVAELDREMSRSVDVTNT--TFLLMAASIYF 112 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCT---TSCH--HHHHHHHHHHHHHCST-THHHHHHHHHHHHHSCCCCSCH--HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcc---cCCh--hHHHHHHHHHHHcCCC-cHHHHHHHHHHHHhcccCCCCH--HHHHHHHHHHH
Confidence 3445667788888877755 2223 3455566666665543 3467888888877542 1 112 23556677777
Q ss_pred cCCCH-HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhc-
Q psy6263 473 GTKRQ-EVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYL- 550 (913)
Q Consensus 473 Gs~~e-~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~- 550 (913)
..++- ++.+.+.. + .+.+ +-+.+|.++...++.+.....++.+.+.. .+.....++.+..-+..
T Consensus 113 ~~g~~~~Al~~l~~----~-~~~~----~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~~~~l~~a~~~l~~~ 178 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ----G-DSLE----CMAMTVQILLKLDRLDLARKELKKMQDQD-----EDATLTQLATAWVSLAAG 178 (291)
T ss_dssp HTTCHHHHHHHHTT----C-CSHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHhC----C-CCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcHHHHHHHHHHHHHhC
Confidence 66664 44554443 1 2233 55677888888888777777777766521 11211122222222223
Q ss_pred -CCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHh
Q psy6263 551 -GKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLH 597 (913)
Q Consensus 551 -G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh 597 (913)
|+-+.+...++.+... +|- .......+|.+|...|+.......+.
T Consensus 179 ~~~~~eA~~~~~~~l~~-~p~-~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADK-CSP-TLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp TTHHHHHHHHHHHHHHH-SCC-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHh-CCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3335565566555443 121 12334568889999999754444443
No 82
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=85.87 E-value=15 Score=36.41 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=85.0
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHHHH
Q psy6263 426 ALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAAVA 503 (913)
Q Consensus 426 AllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~la 503 (913)
+.+.+|.++...++ .+.++..+...+...... ..+...+|.++...++ ++..+.+...+. ++.. . .+-+.
T Consensus 7 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~----~a~~~ 78 (217)
T 2pl2_A 7 NPLRLGVQLYALGR-YDAALTLFERALKENPQD--PEALYWLARTQLKLGLVNPALENGKTLVARTPRY-L----GGYMV 78 (217)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H----HHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-H----HHHHH
Confidence 45566666654333 356778787776643322 2355677777777666 356666666654 3332 1 24455
Q ss_pred HHHHHhcC-----------CCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhh
Q psy6263 504 ASLIYVGT-----------GYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRS 572 (913)
Q Consensus 504 LGLi~lGs-----------~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r 572 (913)
+|.++... ++.+-....++.+.+..+ + ...-...+|..+...|+-+.+...++......+ .
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P---~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~ 150 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP---R--YAPLHLQRGLVYALLGERDKAEASLKQALALED---T 150 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT---T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---C
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc---c--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccc---c
Confidence 66666655 544444444444443111 1 222334456666667776666666665443321 2
Q ss_pred hHHHHHHHHHHhccCCHH-HHHHHH
Q psy6263 573 MAKMMLKMCAYAGSGDVL-VVQEFL 596 (913)
Q Consensus 573 ~~~~~~lglAyaGTGn~~-~Iq~LL 596 (913)
......+|.+|...|+.. +++.+-
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 234467888999999874 444433
No 83
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=84.26 E-value=46 Score=35.30 Aligned_cols=114 Identities=10% Similarity=0.002 Sum_probs=54.6
Q ss_pred HHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhc-cCccHHHHHHHHHHHH
Q psy6263 658 VAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYS-HDLDEEVAHNAIFSMG 736 (913)
Q Consensus 658 ~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s-~D~d~~Vr~~AiiALG 736 (913)
...+|.++...|+ .+.+...+...++....+......++..+...|.. ..+++.+.+.. .+++.. .+...+|
T Consensus 240 ~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~---~~~~~l~ 312 (388)
T 1w3b_A 240 HGNLACVYYEQGL---IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV-AEAEDCYNTALRLCPTHA---DSLNNLA 312 (388)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHCTTCH---HHHHHHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcccH---HHHHHHH
Confidence 4567888887775 46678888887765433333223333333333432 24444444432 133221 2445566
Q ss_pred HhhCCCChh-HHHHHHHHHHHHhcCChhHHHHHHHHHHHhhcCCCce
Q psy6263 737 LVGAGTNNA-RLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTV 782 (913)
Q Consensus 737 lV~aGtnn~-ri~~~Lr~L~~~~~~d~~~~f~~~iAqGLl~~Gkg~~ 782 (913)
.+....++. +-...+++. ...+|.. ..+...+|.+..-.|..
T Consensus 313 ~~~~~~g~~~~A~~~~~~a---l~~~p~~-~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKA---LEVFPEF-AAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHH---TTSCTTC-HHHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCHHHHHHHHHHH---HhcCCCc-HHHHHHHHHHHHHcCCH
Confidence 666666653 233333332 2334442 12344444444444443
No 84
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=84.23 E-value=62 Score=36.78 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=50.9
Q ss_pred HHHHHhccCChhHHhHhHHHHHHhhcCCCc-------hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCC
Q psy6263 680 IFGQLGRYGEPTVRRAVPLAIALCSMSNPA-------LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGT 742 (913)
Q Consensus 680 ~~~~Ll~~~~~~vR~~a~LALgL~~as~~~-------~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGt 742 (913)
.+-.|++.++..++..++-||+-++++++. ..++..|-.+.+..+..++.+|..||.-+....
T Consensus 383 ~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 383 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 345567788999999999999999877654 256788888888889999999999988887653
No 85
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=84.06 E-value=60 Score=36.45 Aligned_cols=100 Identities=11% Similarity=0.021 Sum_probs=61.7
Q ss_pred hhhHHHHHHhhhhhcccCC--------CccccccccccCchhhHHHHHHHHHHHHhcCCCCCc------hhHHHHHHHhh
Q psy6263 387 HGMLSAAASLGLIYLWDVD--------GGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNEC------DPALALLSDYV 452 (913)
Q Consensus 387 ~~k~sA~aslGlI~~~~~~--------~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~------d~~l~lL~~~L 452 (913)
..+..|+.+++-+..++.+ +++..|-+.|.++++..+..|+.+|+-+..+. .+. ..++..|...|
T Consensus 17 ~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~~i~~~G~i~~Lv~lL 95 (457)
T 1xm9_A 17 KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLETRRQNGIREAVSLL 95 (457)
T ss_dssp HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHH
Confidence 3455566566654433221 23445556677778888999999999887642 111 11344566677
Q ss_pred c-CCCHHHHHHHHHHHHHHhccCCCHH-----HHHHHHHhh
Q psy6263 453 L-NDSITLRIGAVLGLGLAYAGTKRQE-----VVTLLLPVL 487 (913)
Q Consensus 453 ~-~~~~~v~~gA~LGLGlay~Gs~~e~-----v~e~L~~~L 487 (913)
. +.++.++.-|+-+|+-...+....+ +...|...+
T Consensus 96 ~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 96 RRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136 (457)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred hhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence 7 6678888888888888776644443 344555566
No 86
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=83.98 E-value=19 Score=38.60 Aligned_cols=205 Identities=9% Similarity=-0.028 Sum_probs=119.5
Q ss_pred HHHHHHhhhhh--cccCCCcccccccccc----Cch-hhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhc----CCCHH
Q psy6263 390 LSAAASLGLIY--LWDVDGGLTPIDKYLY----TSE-DYIKAGALLALGIVNCGVRNECDPALALLSDYVL----NDSIT 458 (913)
Q Consensus 390 ~sA~aslGlI~--~~~~~~~l~~l~~yL~----s~~-~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~----~~~~~ 458 (913)
..+...+|.++ .|+.+.|+..+.+-+. .++ ....+.++..+|.++...++ .+.++..+...+. ..+..
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~ 221 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ-YEDAISHFQKAYSMAEAEKQPQ 221 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHcCChH
Confidence 34444555544 4566666555444332 122 45567788899999875433 4667777766553 24456
Q ss_pred HHHHHHHHHHHHhccCCCH-HHHHHHHHhhc---CCCC-cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCccc
Q psy6263 459 LRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLT---DRKS-TPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQ 533 (913)
Q Consensus 459 v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~---d~~~-~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~ 533 (913)
....+...||.+|...++- ++.+.+...+. .... +. ...+-..+|.++...++.+.+...++...+... ...
T Consensus 222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~ 298 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS--LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ-KAG 298 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HcC
Confidence 6667888999999988874 45555555443 1111 11 135778899999998887666555554443100 011
Q ss_pred ccchhhHHHHHHHHHhcCCcc--cHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhh
Q psy6263 534 DGHYSRFLPLALAITYLGKKD--AIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVC 599 (913)
Q Consensus 534 ~e~i~r~~~lgLgLl~~G~~e--~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~ 599 (913)
+ +........+|.++...++ ..+..++.+...............+|..|...|+.....+.+.-+
T Consensus 299 ~-~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 299 D-VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp C-HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2 2222222346777766654 355555556555555444455667899999999975544444333
No 87
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=83.55 E-value=39 Score=35.42 Aligned_cols=81 Identities=11% Similarity=0.058 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhc-cCccHHHHHHHHHHH
Q psy6263 657 AVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYS-HDLDEEVAHNAIFSM 735 (913)
Q Consensus 657 a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s-~D~d~~Vr~~AiiAL 735 (913)
+...+|.++...|+ .+.|...+.+.++....+.....-++..+...|.. ..++..+.+.. .+++. ..+...+
T Consensus 215 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~---~~~~~~l 287 (365)
T 4eqf_A 215 LQTGLGVLFHLSGE---FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS-EEAVEAYTRALEIQPGF---IRSRYNL 287 (365)
T ss_dssp HHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCc---hHHHHHH
Confidence 34567888887775 56678888888776544444333333333333432 34555555532 23332 1244455
Q ss_pred HHhhCCCCh
Q psy6263 736 GLVGAGTNN 744 (913)
Q Consensus 736 GlV~aGtnn 744 (913)
|.+....++
T Consensus 288 ~~~~~~~g~ 296 (365)
T 4eqf_A 288 GISCINLGA 296 (365)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 555554444
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=83.10 E-value=32 Score=33.88 Aligned_cols=102 Identities=18% Similarity=0.090 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcC------CCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHhhc-----
Q psy6263 421 YIKAGALLALGIVNCGVRNECDPALALLSDYVLN------DSITLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLT----- 488 (913)
Q Consensus 421 ~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~------~~~~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~----- 488 (913)
....-++..+|.++.... +.+.++..+...+.. .+......+...+|.+|.-.++- ++.+.+...+.
T Consensus 40 ~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 40 PDVATMLNILALVYRDQN-KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 445566777777765433 335666666665542 33345556777788888777763 34444433332
Q ss_pred -CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy6263 489 -DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLI 525 (913)
Q Consensus 489 -d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~ 525 (913)
++..+ ....+-..+|.++.-.++.+-....++.+.
T Consensus 119 ~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 119 LGKFHP--DVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HCTTCH--HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCCCCh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111 123566778888888887665554444443
No 89
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=82.61 E-value=63 Score=35.65 Aligned_cols=178 Identities=15% Similarity=0.052 Sum_probs=103.7
Q ss_pred cCCCccccccccccCch-----hhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-
Q psy6263 403 DVDGGLTPIDKYLYTSE-----DYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR- 476 (913)
Q Consensus 403 ~~~~~l~~l~~yL~s~~-----~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~- 476 (913)
+.+++...+.+.+.... ....+-++..+|.++.... +.+.++..+...+..... ..+...+|.+|.-.++
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN-NLLDAQVLLQESINLHPT---PNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCC---HHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHhcCH
Confidence 44455555554443211 1234557888888876443 346778888777664333 4566778888887776
Q ss_pred HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCccc
Q psy6263 477 QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDA 555 (913)
Q Consensus 477 e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~ 555 (913)
++..+.+...+. ++. .. .+-+.+|.++...++.+.....++.+....+ . ...-...+|..+...|+-+.
T Consensus 293 ~~A~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~--~~~~~~~la~~~~~~g~~~~ 362 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPE-YP----PTYYHRGQMYFILQDYKNAKEDFQKAQSLNP---E--NVYPYIQLACLLYKQGKFTE 362 (537)
T ss_dssp HHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T--CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhccCCC-CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---C--CHHHHHHHHHHHHHcCCHHH
Confidence 466666666664 222 22 3466788888888887766666665554211 1 22234445556666777677
Q ss_pred HHHHHHHHhcC-CChhhhhHHHHHHHHHHhccCCHHHHHHHHh
Q psy6263 556 IDTTLAALEVL-PDPFRSMAKMMLKMCAYAGSGDVLVVQEFLH 597 (913)
Q Consensus 556 ~~~ll~~L~~~-~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh 597 (913)
+...++..... ++. ......+|.+|...|+.....+.+.
T Consensus 363 A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 363 SEAFFNETKLKFPTL---PEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 76666655433 221 1234556888999998754444333
No 90
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=81.47 E-value=42 Score=32.86 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHH
Q psy6263 502 VAASLIYVGTGYHEVASAILQT 523 (913)
Q Consensus 502 laLGLi~lGs~n~~v~~~lL~~ 523 (913)
+.+|.++.-.++.+.+...++.
T Consensus 75 ~~la~~~~~~~~~~~A~~~~~~ 96 (252)
T 2ho1_A 75 AALAVVFQTEMEPKLADEEYRK 96 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444333333
No 91
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=81.45 E-value=17 Score=40.06 Aligned_cols=64 Identities=11% Similarity=-0.060 Sum_probs=52.1
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCch--hHHHHHHhhccCccHHHHHHHHHHHHHhhC
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL--NVIDVLNKYSHDLDEEVAHNAIFSMGLVGA 740 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~--~vid~L~~~s~D~d~~Vr~~AiiALGlV~a 740 (913)
..+.+.+.+.+.+|+||+.|++|..=++.-.|.. ..++.+.....|.+..|-.+|+-++--+..
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 4556677788999999999999999888777653 667778888889999998888888877764
No 92
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=81.18 E-value=4.3 Score=43.66 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=69.3
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCCch-------hHHHHHHhhcc-CccHHHHHHHHHHHHHhhCCCChhH--H
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNPAL-------NVIDVLNKYSH-DLDEEVAHNAIFSMGLVGAGTNNAR--L 747 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~-------~vid~L~~~s~-D~d~~Vr~~AiiALGlV~aGtnn~r--i 747 (913)
+.++.+|+++.++.||..++.+||-+..++|.. .++..|.++.. +++..|+.+|+.|++-+..|..+.. +
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~ 163 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF 163 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 344554788899999999999999998877742 57777877764 6789999999999999988755311 1
Q ss_pred H--HHHHHHHHH-hcCChhHHHHHHHHHHHhhcC
Q psy6263 748 A--TMLRQLAQY-HVKNTGHLFMVRIAQGLTHMG 778 (913)
Q Consensus 748 ~--~~Lr~L~~~-~~~d~~~~f~~~iAqGLl~~G 778 (913)
. ..+..|... .+.|+..+--+..|++=+..|
T Consensus 164 ~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 164 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 1 112222221 245777776666666655554
No 93
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=80.14 E-value=45 Score=35.63 Aligned_cols=206 Identities=12% Similarity=0.035 Sum_probs=120.3
Q ss_pred hHHHHHHhhhhh--cccCCCcccccccccc---C-ch-hhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhc----CCCH
Q psy6263 389 MLSAAASLGLIY--LWDVDGGLTPIDKYLY---T-SE-DYIKAGALLALGIVNCGVRNECDPALALLSDYVL----NDSI 457 (913)
Q Consensus 389 k~sA~aslGlI~--~~~~~~~l~~l~~yL~---s-~~-~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~----~~~~ 457 (913)
...+...+|.++ .|+.+.|+..+.+-+. . .+ ....+.+...+|.++...++ .+.++..+...+. ..+.
T Consensus 140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~ 218 (378)
T 3q15_A 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH-YDKALPHLEAALELAMDIQND 218 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCH
Confidence 344445566544 5666667666555442 1 11 34567788889998865433 4667777766554 2345
Q ss_pred HHHHHHHHHHHHHhccCCCH-HHHHHHHHhhc---CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCccc
Q psy6263 458 TLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLT---DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQ 533 (913)
Q Consensus 458 ~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~---d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~ 533 (913)
.....+...||.+|...++- ++.+.+...+. ... .... ..+.+.+|.++...++.+.+...++...+... +..
T Consensus 219 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~ 295 (378)
T 3q15_A 219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV-PDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT-ARS 295 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-GGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC-ChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HcC
Confidence 56667888999999888773 55555555553 101 1112 35778899999999987776666655554211 112
Q ss_pred ccchhhHHHHHHHHHhcCCcc--cHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhh
Q psy6263 534 DGHYSRFLPLALAITYLGKKD--AIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVC 599 (913)
Q Consensus 534 ~e~i~r~~~lgLgLl~~G~~e--~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~ 599 (913)
+ +........++.++...++ ..+..++.+...............+|..|...|+.....+.+.-+
T Consensus 296 ~-~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 296 H-KFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp C-SCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2 2222223446667665543 344445555554443333344567899999999975544444433
No 94
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=80.00 E-value=19 Score=37.89 Aligned_cols=234 Identities=12% Similarity=0.049 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHhhc-CCCCcHHHHHH
Q psy6263 422 IKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLT-DRKSTPEVVAF 499 (913)
Q Consensus 422 ~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~-d~~~~~ev~~~ 499 (913)
...-+++.+|..+...+ +.+.++..+...+...... .-+...+|.+|...++- ++.+.+...+. ++.. . .
T Consensus 63 ~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~----~ 134 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEG-DLPVTILFMEAAILQDPGD--AEAWQFLGITQAENENEQAAIVALQRCLELQPNN-L----K 134 (365)
T ss_dssp TTCTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H----H
T ss_pred cchhHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-H----H
Confidence 33444556666654332 3456788887776533222 34566778888777773 56666665554 3221 1 3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchh-h----HHHHHHHHHhcCCc--ccHHHHHHHHhc-CCChhh
Q psy6263 500 AAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYS-R----FLPLALAITYLGKK--DAIDTTLAALEV-LPDPFR 571 (913)
Q Consensus 500 A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~-r----~~~lgLgLl~~G~~--e~~~~ll~~L~~-~~~pi~ 571 (913)
+-..+|.++.-.++.+-....++.+.+..+... . .+. . .+...+|.++...+ +.+...++.... .++. .
T Consensus 135 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~ 211 (365)
T 4eqf_A 135 ALMALAVSYTNTSHQQDACEALKNWIKQNPKYK-Y-LVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM-I 211 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH-C-C-------------------CCHHHHHHHHHHHHHHHHSCSS-C
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCccch-H-HHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc-c
Confidence 566778888888877666555555544211000 0 110 0 01112355554444 344444444433 3321 0
Q ss_pred hhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhh
Q psy6263 572 SMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKD 651 (913)
Q Consensus 572 r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 651 (913)
.......+|..|...|+.....+.+.-+.... ++
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------------------------p~ 245 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR----------------------------------------------PE 245 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------------------------------TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------------------------CC
Confidence 12234567888999998754444433332211 00
Q ss_pred hhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHh
Q psy6263 652 LSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNK 718 (913)
Q Consensus 652 v~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~ 718 (913)
...+...+|.++...|+ .+.|...+...++....+.....-++..+...|... .++..+.+
T Consensus 246 --~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~ 306 (365)
T 4eqf_A 246 --DYSLWNRLGATLANGDR---SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR-EAVSNFLT 306 (365)
T ss_dssp --CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH-HHHHHHHH
T ss_pred --CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH-HHHHHHHH
Confidence 11245678888888875 567888888888765444444444444444445432 33444433
No 95
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=79.25 E-value=39 Score=33.98 Aligned_cols=170 Identities=17% Similarity=0.063 Sum_probs=91.1
Q ss_pred HHHHhhhh--hcccCCCccccccccccC------chhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcC------CCH
Q psy6263 392 AAASLGLI--YLWDVDGGLTPIDKYLYT------SEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLN------DSI 457 (913)
Q Consensus 392 A~aslGlI--~~~~~~~~l~~l~~yL~s------~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~------~~~ 457 (913)
+...+|.+ ..|+.++|+..+.+.+.. .+.....-+...+|.++...+ +.+.++..+...+.. .+.
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-KYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33344443 356777777776665541 134555667777787775433 345677776665542 333
Q ss_pred HHHHHHHHHHHHHhccCCCH-HHHHHHHHhhcC------CCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCc-
Q psy6263 458 TLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLTD------RKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPV- 529 (913)
Q Consensus 458 ~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~d------~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~- 529 (913)
.....+...+|.+|...++- +..+.+...+.- .. .. ....+-..+|.++...++.+.....++.+.+...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-HP-DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-CH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-Ch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45566778888888887774 444444444321 11 11 2235677889999988887655555444433100
Q ss_pred C-cccc-cchhhHHHHHHHHHhcCCcccHHHHHHHHh
Q psy6263 530 S-ELQD-GHYSRFLPLALAITYLGKKDAIDTTLAALE 564 (913)
Q Consensus 530 ~-~~~~-e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~ 564 (913)
. ...+ ....-...+|..+...|+-+.+...++...
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 0001 011122333445555666666655555443
No 96
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=77.72 E-value=19 Score=35.84 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=63.3
Q ss_pred HHHHHhccCCHHHHHHHHHhhCc----------------hhhHHHHHhccChHHHHHHHHhhcccCCChhhHHHHHHHHH
Q psy6263 169 IIQFDMKHNAEIQACDLLMEIDH----------------LELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLN 232 (913)
Q Consensus 169 iv~~~l~~n~e~eAidlalE~~~----------------ld~i~~~v~~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~ 232 (913)
-|...++.|.+..|+.+|-++++ ++.-+........-.-.+||..+.. +.+-++.+.+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg------~~e~L~kla~ 84 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTG------DVNKLSKMQN 84 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHT------CHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHH
Confidence 45555666777777766665544 3444443333222222222222211 2234456667
Q ss_pred HHhccCCHHHHHHHHHhcCCchhHHHHHhccCChhHHHHHHHHHhhcc
Q psy6263 233 NYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQ 280 (913)
Q Consensus 233 iy~~~~~~~~al~~al~L~d~~~v~~i~~~~~d~~~~~Qiaf~lar~~ 280 (913)
+....+++..+..+++.+||.+...++|.++.- +..|+..||..
T Consensus 85 iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA~~~A~t~ 128 (177)
T 3mkq_B 85 IAQTREDFGSMLLNTFYNNSTKERSSIFAEGGS----LPLAYAVAKAN 128 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC----HHHHHHHHHHT
T ss_pred HHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCC----hHHHHHHHHHc
Confidence 777788999999999999999999999998643 55677777744
No 97
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=77.69 E-value=18 Score=37.76 Aligned_cols=126 Identities=15% Similarity=0.058 Sum_probs=83.2
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy6263 442 DPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAIL 521 (913)
Q Consensus 442 d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL 521 (913)
+..+.+......++...+|.-|+..||-. +...+++..+.+.+.+++ +..|.-.++-++|=+....+.+.....|.
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~---~~~~~~L~~ir~~va~D~-~WrVre~lA~a~~~~~~~~~pe~~l~~~~ 145 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL---SKDKEILIFMRDEVSKDN-NWRVQEVLAKAFDEFCKKIEYKKALPIID 145 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT---TTSHHHHHHHHHTGGGCS-CHHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc---cCcHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 45566666666677789999999988876 467899999998565433 35566677788887665444445667778
Q ss_pred HHHHcCCcCcccccchhhHHHHHH-H--HH--hcCCcccHHHHHHHHhcCCChhhhhHHHH
Q psy6263 522 QTLIELPVSELQDGHYSRFLPLAL-A--IT--YLGKKDAIDTTLAALEVLPDPFRSMAKMM 577 (913)
Q Consensus 522 ~~l~~~~~~~~~~e~i~r~~~lgL-g--Ll--~~G~~e~~~~ll~~L~~~~~pi~r~~~~~ 577 (913)
.++.+. +..++|++..++ . .. +-...+.+-.+++.+..+++-++|-+...
T Consensus 146 ~W~~d~------n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan 200 (240)
T 3l9t_A 146 EWLKSS------NLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGN 200 (240)
T ss_dssp HHHHCS------SHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHH
T ss_pred HHhcCC------CHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 888762 226777776664 1 11 11122456667777778888888876443
No 98
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=77.43 E-value=74 Score=33.31 Aligned_cols=307 Identities=16% Similarity=0.043 Sum_probs=147.5
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHhhc--CCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHhhc---CCCCcHHHHHH
Q psy6263 426 ALLALGIVNCGVRNECDPALALLSDYVL--NDSITLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLT---DRKSTPEVVAF 499 (913)
Q Consensus 426 AllaLGLi~aG~~~e~d~~l~lL~~~L~--~~~~~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~---d~~~~~ev~~~ 499 (913)
+++-.|..+...+ +.+.++..+...+. ..+.....-+...+|.+|.-.++- +..+.+...+. ..... .....
T Consensus 11 ~l~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~ 88 (406)
T 3sf4_A 11 ELALEGERLCKSG-DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ-LGEAK 88 (406)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc-HHHHH
Confidence 4444555544322 23566676666554 233444556777888888777663 44444433321 11111 12234
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHh--cCC--------------------cccHH
Q psy6263 500 AAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITY--LGK--------------------KDAID 557 (913)
Q Consensus 500 A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~--~G~--------------------~e~~~ 557 (913)
+-..+|.++.-.++.+-....++.+.+... ...+......+-..+|.++ .|. -+.+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISR-ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 566778888877776555444443332100 0111011111222344444 444 22222
Q ss_pred HH----HHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCc
Q psy6263 558 TT----LAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTP 633 (913)
Q Consensus 558 ~l----l~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (913)
.. ++......++.........+|..|...|+.....+.+.-+.....
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------------------- 218 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK----------------------------- 218 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-----------------------------
Confidence 22 222334445555555567788899999987443333322221100
Q ss_pred hhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhc----cCChhHHhHhHHHHHHhhcCCCc
Q psy6263 634 AAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGR----YGEPTVRRAVPLAIALCSMSNPA 709 (913)
Q Consensus 634 ~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~----~~~~~vR~~a~LALgL~~as~~~ 709 (913)
+.. .+.. ...+...+|.++...|+ .+.+...+...++ .+++.....+-..+|.++...++
T Consensus 219 -------~~~-----~~~~-~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 282 (406)
T 3sf4_A 219 -------EFG-----DKAA-ERRAYSNLGNAYIFLGE---FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 282 (406)
T ss_dssp -------HTT-----CHHH-HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------hcC-----CcHH-HHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc
Confidence 000 0111 23356678888888876 4556666665553 34544445555666766654433
Q ss_pred -hhHHHHHHh---hc-cCccHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHh--cCChhHHHHHHHHHHHhhcCCC
Q psy6263 710 -LNVIDVLNK---YS-HDLDEEVAHNAIFSMGLVGAGTNNA-RLATMLRQLAQYH--VKNTGHLFMVRIAQGLTHMGKG 780 (913)
Q Consensus 710 -~~vid~L~~---~s-~D~d~~Vr~~AiiALGlV~aGtnn~-ri~~~Lr~L~~~~--~~d~~~~f~~~iAqGLl~~Gkg 780 (913)
..+++.+.+ +. ...+......+...+|.+....++. +....+++-.+.. ..++....-+...+|.++.-.|
T Consensus 283 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 283 YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 244444433 22 1233333345666777777666653 2333333322222 2344444555556665554444
No 99
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=76.79 E-value=58 Score=31.80 Aligned_cols=188 Identities=14% Similarity=-0.009 Sum_probs=106.9
Q ss_pred hhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-H
Q psy6263 399 IYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-Q 477 (913)
Q Consensus 399 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e 477 (913)
...|+.++|+..+.+.+...... .-+.+.+|.++.... +.+.++..+...+...... ..+...+|.+|...++ +
T Consensus 48 ~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~ 122 (252)
T 2ho1_A 48 LQRGNTEQAKVPLRKALEIDPSS--ADAHAALAVVFQTEM-EPKLADEEYRKALASDSRN--ARVLNNYGGFLYEQKRYE 122 (252)
T ss_dssp HHTTCTGGGHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH
T ss_pred HHcCChHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCc--HHHHHHHHHHHHHHhHHH
Confidence 44678888888777665432222 345666676665433 3467777777766532222 2345566777776666 4
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHH
Q psy6263 478 EVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAID 557 (913)
Q Consensus 478 ~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~ 557 (913)
++.+.+...+.....+.. ..+-+.+|.++...++.+-....++.+.+..+ . ...-...+|..+...|+-+.+.
T Consensus 123 ~A~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPER--SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR----N-QPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHHHHHHHHTTCTTCTTH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----C-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCccCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc----c-cHHHHHHHHHHHHHcCCHHHHH
Confidence 566666666551111111 24566788888888887666666655554211 1 2222334445555566666777
Q ss_pred HHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhh
Q psy6263 558 TTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCS 600 (913)
Q Consensus 558 ~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~ 600 (913)
..++......... ......++..|...|+.....+.+.-+.
T Consensus 196 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 196 QYYDLFAQGGGQN--ARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHTTSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCc--HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6666655432221 2234567788889999866666555554
No 100
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=76.25 E-value=53 Score=31.05 Aligned_cols=13 Identities=23% Similarity=0.158 Sum_probs=6.9
Q ss_pred HHHHHHHhccCCH
Q psy6263 577 MLKMCAYAGSGDV 589 (913)
Q Consensus 577 ~~lglAyaGTGn~ 589 (913)
..+|.+|...|+.
T Consensus 117 ~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 117 LNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCH
Confidence 4455555555554
No 101
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=75.54 E-value=45 Score=32.22 Aligned_cols=184 Identities=16% Similarity=0.107 Sum_probs=98.6
Q ss_pred hhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-H
Q psy6263 399 IYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-Q 477 (913)
Q Consensus 399 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e 477 (913)
...|+.++|+..+.+.+...... .-+.+.+|.++.... +.+.++..+...+...... ..+...+|.+|...++ +
T Consensus 34 ~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~ 108 (243)
T 2q7f_A 34 SEFGDYEKAAEAFTKAIEENKED--AIPYINFANLLSSVN-ELERALAFYDKALELDSSA--ATAYYGAGNVYVVKEMYK 108 (243)
T ss_dssp --------CCTTHHHHHTTCTTC--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH
T ss_pred HHhhCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHhccHH
Confidence 44678888888887776543333 345566666654332 3456777777766532222 2445567777776666 3
Q ss_pred HHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccH
Q psy6263 478 EVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAI 556 (913)
Q Consensus 478 ~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~ 556 (913)
++.+.+...+. ++. .. .+-+.+|.++...++.+-+...++.+.+..+ . ...-...+|..+...|.-+.+
T Consensus 109 ~A~~~~~~~~~~~~~-~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 109 EAKDMFEKALRAGME-NG----DLFYMLGTVLVKLEQPKLALPYLQRAVELNE----N-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHHHHHHHHHTCC-SH----HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT----T-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----c-cHHHHHHHHHHHHHcCCHHHH
Confidence 55555555553 222 22 2456678888888887766666665554211 1 222234445555666776666
Q ss_pred HHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhh
Q psy6263 557 DTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVC 599 (913)
Q Consensus 557 ~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~ 599 (913)
...++......... ......+|.+|...|+.....+.+.-+
T Consensus 179 ~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 179 LSQFAAVTEQDPGH--ADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhCccc--HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666544322111 123566788899999874444443333
No 102
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=74.41 E-value=39 Score=29.76 Aligned_cols=142 Identities=16% Similarity=0.012 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhccCCCH-HHHHHHHHhhc--CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCccc
Q psy6263 457 ITLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLT--DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQ 533 (913)
Q Consensus 457 ~~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~--d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~ 533 (913)
+..+.-+...+|.+|...++- +..+.+...+. ...........+-..+|.++.-.++.+.....++...+... ...
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~ 83 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR-QLK 83 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhC
Confidence 344555666677777666653 34444433332 00011122234566777777777776554444443332100 011
Q ss_pred ccchh--hHHHHHHHHHhcCCcccHHHHHH----HHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhh
Q psy6263 534 DGHYS--RFLPLALAITYLGKKDAIDTTLA----ALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVC 599 (913)
Q Consensus 534 ~e~i~--r~~~lgLgLl~~G~~e~~~~ll~----~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~ 599 (913)
+.... -...+|..+...|+-+.+...++ ......++.........+|..|...|+.....+.+.-+
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 10111 12223334444555454444333 33345556556666677889999999875544444433
No 103
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=74.37 E-value=73 Score=32.27 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc---CCcCcccccchhhHHHHHHHHHhc
Q psy6263 474 TKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIE---LPVSELQDGHYSRFLPLALAITYL 550 (913)
Q Consensus 474 s~~e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~---~~~~~~~~e~i~r~~~lgLgLl~~ 550 (913)
+-++++.+.++..|-|+- .-| ..-++.+=+. +-..-++..+.++..+.. .++ . - +...-.+-++|.+..
T Consensus 28 ~~d~~~l~~lI~~LDDDl--wtV-~kNAl~vi~~-i~~~~~el~epl~~kL~vm~~ksE--a-I-pltqeIa~a~G~la~ 99 (253)
T 2db0_A 28 KYDESVLKKLIELLDDDL--WTV-VKNAISIIMV-IAKTREDLYEPMLKKLFSLLKKSE--A-I-PLTQEIAKAFGQMAK 99 (253)
T ss_dssp HHCHHHHHHHHHHTTCSC--HHH-HHHHHHHHHH-HHTTCGGGHHHHHHHHHHHHHHCC--S-H-HHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhccHH--HHH-HHhHHHHHHH-HHHHhHHHHHHHHHHHHHHHhhcc--c-C-chHHHHHHHHhHHHH
Confidence 457888888888877654 111 1233333222 223334555554443332 111 0 0 233334446777777
Q ss_pred CCcccHHHHHHHHhc---CCChhhhhHHHHHHH-HHHhccCC-HHHHHHHHhhhh
Q psy6263 551 GKKDAIDTTLAALEV---LPDPFRSMAKMMLKM-CAYAGSGD-VLVVQEFLHVCS 600 (913)
Q Consensus 551 G~~e~~~~ll~~L~~---~~~pi~r~~~~~~lg-lAyaGTGn-~~~Iq~LLh~~~ 600 (913)
-+++.+..++..+.+ ..+|-.|-+..++++ +|-+.-.- ..++++++.++.
T Consensus 100 i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smlt 154 (253)
T 2db0_A 100 EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLS 154 (253)
T ss_dssp HCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTS
T ss_pred hCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhc
Confidence 788888887777653 457777776666654 22211000 145667766664
No 104
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=74.29 E-value=70 Score=31.48 Aligned_cols=238 Identities=15% Similarity=0.004 Sum_probs=0.0
Q ss_pred ccCCCccccccccccC--chhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-HH
Q psy6263 402 WDVDGGLTPIDKYLYT--SEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-QE 478 (913)
Q Consensus 402 ~~~~~~l~~l~~yL~s--~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e~ 478 (913)
++.++++..+.+.+.. .++....-+.+.+|.++...++- +.++..+...+........ +...+|.+|...++ ++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~~~~~~--~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLR-ALARNDFSQALAIRPDMPE--VFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccH-HHHHHHHHHHHHcCCCcHH--HHHHHHHHHHHccCHHH
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHH
Q psy6263 479 VVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDT 558 (913)
Q Consensus 479 v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ 558 (913)
..+.+...+.-.....+ +-+.+|.++...++.+-....++.+.+ ...........+++. ...|..+.+..
T Consensus 96 A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~-~~~~~~~~A~~ 165 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNY----AHLNRGIALYYGGRDKLAQDDLLAFYQ-----DDPNDPFRSLWLYLA-EQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHHHCTTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHH-HHHHCHHHHHH
T ss_pred HHHHHHHHHhcCccccH----HHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCCChHHHHHHHHH-HHhcCHHHHHH
Q ss_pred HHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhc
Q psy6263 559 TLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAAN 638 (913)
Q Consensus 559 ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (913)
.++.......+. ...+.++..|.+.++.......+.-+.....
T Consensus 166 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------------- 208 (275)
T 1xnf_A 166 VLKQHFEKSDKE---QWGWNIVEFYLGNISEQTLMERLKADATDNT---------------------------------- 208 (275)
T ss_dssp HHHHHHHHSCCC---STHHHHHHHHTTSSCHHHHHHHHHHHCCSHH----------------------------------
T ss_pred HHHHHHhcCCcc---hHHHHHHHHHHHhcCHHHHHHHHHHHhcccc----------------------------------
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHH
Q psy6263 639 DKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIAL 702 (913)
Q Consensus 639 ~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL 702 (913)
........+...+|.++...|+ .+.|...+...++....+.....-..+.+
T Consensus 209 ----------~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~~l 259 (275)
T 1xnf_A 209 ----------SLAEHLSETNFYLGKYYLSLGD---LDSATALFKLAVANNVHNFVEHRYALLEL 259 (275)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCTTCHHHHHHHHHH
T ss_pred ----------cccccccHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCchhHHHHHHHHHHH
No 105
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=73.22 E-value=60 Score=31.46 Aligned_cols=184 Identities=16% Similarity=0.061 Sum_probs=92.5
Q ss_pred cccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcC-----CCHHHHHHHHHHHHHHhccCC
Q psy6263 401 LWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLN-----DSITLRIGAVLGLGLAYAGTK 475 (913)
Q Consensus 401 ~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~-----~~~~v~~gA~LGLGlay~Gs~ 475 (913)
.|+.++|+..+.+.+... ....+.+.+|.++.... +.+.++..+...+.- .+.....-+...+|.+|...+
T Consensus 18 ~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKG-EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG 93 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc
Confidence 445555555554443322 12344555555554332 234555555554431 112222455566666666655
Q ss_pred CH-HHHHHHHHhhc-CCC----------------------CcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCc
Q psy6263 476 RQ-EVVTLLLPVLT-DRK----------------------STPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSE 531 (913)
Q Consensus 476 ~e-~v~e~L~~~L~-d~~----------------------~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~ 531 (913)
+- +..+.+...+. ++. .... ...+-+.+|.++...++.+-....++.+.+..+
T Consensus 94 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-- 170 (258)
T 3uq3_A 94 DLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-- 170 (258)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred cHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--
Confidence 53 34444433332 110 1111 124566788888888887666666666554211
Q ss_pred ccccchhhHHHHHHHHHhcCCcccHHHHHHHHhc-CCChhhhhHHHHHHHHHHhccCCHHHHHHHHh
Q psy6263 532 LQDGHYSRFLPLALAITYLGKKDAIDTTLAALEV-LPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLH 597 (913)
Q Consensus 532 ~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~-~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh 597 (913)
. ...-...+|..+...|+-+.+...++.... .++. ......+|.+|...|+.....+.+.
T Consensus 171 --~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 171 --E-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---VRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp --T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --c-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1 222334455555566666666666655443 2221 2334667889999999744444333
No 106
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=73.19 E-value=91 Score=32.29 Aligned_cols=96 Identities=14% Similarity=0.025 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhccCCC-HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhh
Q psy6263 461 IGAVLGLGLAYAGTKR-QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSR 539 (913)
Q Consensus 461 ~gA~LGLGlay~Gs~~-e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r 539 (913)
.-+.+.+|.++...++ +++.+.+...+....... .+-+.+|.++...++.+-....++.+.+.. .+....
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~ 134 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM----EAWQYLGTTQAENEQELLAISALRRCLELK-----PDNQTA 134 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-----CCCHHH
Confidence 4455667777777776 466666666664221122 355677888888888766666665555421 112223
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHhc
Q psy6263 540 FLPLALAITYLGKKDAIDTTLAALEV 565 (913)
Q Consensus 540 ~~~lgLgLl~~G~~e~~~~ll~~L~~ 565 (913)
...+|..+...|+.+.+...++....
T Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 135 LMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555666776666666665544
No 107
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=72.61 E-value=70 Score=30.76 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=12.5
Q ss_pred HHHHHHHhhcCcccccccHHHHHHHHhcc
Q psy6263 659 AALGVAVVALGEEIGSEMSTRIFGQLGRY 687 (913)
Q Consensus 659 ~~Lgiali~~ge~ig~em~~r~~~~Ll~~ 687 (913)
..+|.++...|+ .+.+.+.+...++.
T Consensus 163 ~~l~~~~~~~~~---~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 163 FQFGMCLANEGM---LDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence 344555555543 34455555555443
No 108
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=72.15 E-value=1e+02 Score=32.55 Aligned_cols=277 Identities=11% Similarity=0.041 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccc
Q psy6263 459 LRIGAVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGH 536 (913)
Q Consensus 459 v~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~ 536 (913)
....+.+.+|..+.-.++ ++..+.+...+. ++. ..+....+-..+|.++.-.++.+.....++.+.+... ...+.+
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~ 123 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK-SMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HccCch
Confidence 445556667777766666 345555555543 222 2222234556777777777765554444433332100 011101
Q ss_pred --hhhHHHHHHHHHhcCCcccHHHHHHHH----hcCCChhhhhHHHHHHHHHHhccCC-----------------HHHHH
Q psy6263 537 --YSRFLPLALAITYLGKKDAIDTTLAAL----EVLPDPFRSMAKMMLKMCAYAGSGD-----------------VLVVQ 593 (913)
Q Consensus 537 --i~r~~~lgLgLl~~G~~e~~~~ll~~L----~~~~~pi~r~~~~~~lglAyaGTGn-----------------~~~Iq 593 (913)
..-...+|..+...|+-+.+...++.. ....++.........+|..|...|+ .....
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 112223344444455555444443332 2233344444455667888888887 32222
Q ss_pred HHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccc
Q psy6263 594 EFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIG 673 (913)
Q Consensus 594 ~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig 673 (913)
+.+.-+.+... ... .+.. ...+...+|.++...|+
T Consensus 204 ~~~~~al~~~~------------------------------------~~~-----~~~~-~~~~~~~la~~~~~~g~--- 238 (411)
T 4a1s_A 204 EFYQENLKLMR------------------------------------DLG-----DRGA-QGRACGNLGNTYYLLGD--- 238 (411)
T ss_dssp HHHHHHHHHHH------------------------------------HHT-----CHHH-HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHH------------------------------------HcC-----CHHH-HHHHHHHHHHHHHHcCC---
Confidence 22111110000 000 0111 23355678888888875
Q ss_pred cccHHHHHHHHhc----cCChhHHhHhHHHHHHhhcCCCc-hhHHHHHHh---hcc-CccHHHHHHHHHHHHHhhCCCCh
Q psy6263 674 SEMSTRIFGQLGR----YGEPTVRRAVPLAIALCSMSNPA-LNVIDVLNK---YSH-DLDEEVAHNAIFSMGLVGAGTNN 744 (913)
Q Consensus 674 ~em~~r~~~~Ll~----~~~~~vR~~a~LALgL~~as~~~-~~vid~L~~---~s~-D~d~~Vr~~AiiALGlV~aGtnn 744 (913)
.+.+...+...++ .+++.....+-..+|.++...++ ..+++.+.+ ... ..+......+...+|.+....++
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 4556666665554 34444444455666666655443 234444433 221 23333334566777777766665
Q ss_pred h-HHHHHHHHHHHHh--cCChhHHHHHHHHHHHhhcCCCce
Q psy6263 745 A-RLATMLRQLAQYH--VKNTGHLFMVRIAQGLTHMGKGTV 782 (913)
Q Consensus 745 ~-ri~~~Lr~L~~~~--~~d~~~~f~~~iAqGLl~~Gkg~~ 782 (913)
. +-...+++..... ..++.....+...+|.++...|..
T Consensus 319 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 359 (411)
T 4a1s_A 319 FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGH 359 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccH
Confidence 2 2333333332222 234444455666677776666654
No 109
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=70.91 E-value=67 Score=29.83 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=14.7
Q ss_pred HHHHHHHHhhcCcccccccHHHHHHHHhcc
Q psy6263 658 VAALGVAVVALGEEIGSEMSTRIFGQLGRY 687 (913)
Q Consensus 658 ~~~Lgiali~~ge~ig~em~~r~~~~Ll~~ 687 (913)
...+|.++...|+ .+.|...+.+.++.
T Consensus 144 ~~~lg~~~~~~g~---~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 144 YQSIGLAYEGKGL---RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHhC
Confidence 4456666666654 34455555555543
No 110
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=70.39 E-value=58 Score=32.51 Aligned_cols=155 Identities=15% Similarity=0.080 Sum_probs=88.1
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHH
Q psy6263 425 GALLALGIVNCGVRNECDPALALLSDYVLND-SITLRIGAVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAA 501 (913)
Q Consensus 425 GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~-~~~v~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~ 501 (913)
-+++.+|..+...++ .+.++..+...+... +.....-+.+.+|.+|...++ +++.+.+...+. .+..+ ....+-
T Consensus 16 ~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~a~ 92 (261)
T 3qky_A 16 QEAFERAMEFYNQGK-YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP--RVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--THHHHH
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc--hhHHHH
Confidence 456666766654333 467888888877642 233345678889999988887 456666666664 22211 112567
Q ss_pred HHHHHHHhc--------CCCHHHHHHHHHHHHcCCcCcccccchhhHHH--------------HHHHHHhcCCc--ccHH
Q psy6263 502 VAASLIYVG--------TGYHEVASAILQTLIELPVSELQDGHYSRFLP--------------LALAITYLGKK--DAID 557 (913)
Q Consensus 502 laLGLi~lG--------s~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~--------------lgLgLl~~G~~--e~~~ 557 (913)
+.+|.++.. .++.+-+...++.+.+..+ ++ +...-+- ..+|.+++..+ +.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p---~~-~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP---NH-ELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT---TC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc---Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 788888877 6655555455554444211 11 2222111 34455554444 4555
Q ss_pred HHHHHH-hcCCChhhhhHHHHHHHHHHhcc
Q psy6263 558 TTLAAL-EVLPDPFRSMAKMMLKMCAYAGS 586 (913)
Q Consensus 558 ~ll~~L-~~~~~pi~r~~~~~~lglAyaGT 586 (913)
..++.+ ...++.....-+.+.+|.+|...
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 555544 44455444455667788888876
No 111
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=70.28 E-value=63 Score=29.25 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHhhc-CCCCcHHHHHHH
Q psy6263 423 KAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLT-DRKSTPEVVAFA 500 (913)
Q Consensus 423 k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~-d~~~~~ev~~~A 500 (913)
+.-+.+.+|.++...+ +.+.++..+...+...... .-+...+|.+|.-.++- +..+.+...+. ++. .. .+
T Consensus 7 ~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~ 78 (186)
T 3as5_A 7 RQVYYRDKGISHAKAG-RYSQAVMLLEQVYDADAFD--VDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NV----KV 78 (186)
T ss_dssp HHHHHHHHHHHHHHHT-CHHHHHHHHTTTCCTTSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH----HH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCccC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CH----HH
Confidence 3445555666554332 2355666666665432222 23445666666666553 44555554443 222 12 24
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcC-CChhhhhHHHHHH
Q psy6263 501 AVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVL-PDPFRSMAKMMLK 579 (913)
Q Consensus 501 ~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~-~~pi~r~~~~~~l 579 (913)
-+.+|.++.-.++.+.+...++.+....+ . ...-...+|..+...|+-+.+...++..... ++. ......+
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 150 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEANP----I-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE---GKVHRAI 150 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT----T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCc----H-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---hHHHHHH
Confidence 45666667766766665555555544211 1 2222333444555556656666665554432 221 2344667
Q ss_pred HHHHhccCCHHHHHHHHh
Q psy6263 580 MCAYAGSGDVLVVQEFLH 597 (913)
Q Consensus 580 glAyaGTGn~~~Iq~LLh 597 (913)
|..|...|+.....+.+.
T Consensus 151 a~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 888889998754444433
No 112
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=70.14 E-value=1.1e+02 Score=32.06 Aligned_cols=200 Identities=15% Similarity=0.019 Sum_probs=106.9
Q ss_pred hhhhcccCCCccccccccc---cCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhc----CCCHHHHHHHHHHHHH
Q psy6263 397 GLIYLWDVDGGLTPIDKYL---YTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVL----NDSITLRIGAVLGLGL 469 (913)
Q Consensus 397 GlI~~~~~~~~l~~l~~yL---~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~----~~~~~v~~gA~LGLGl 469 (913)
-.+..|+.++++..+.+-+ +..++...+.++..+|.++...+ +.+.+...+..-+. ..+......+...+|.
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3345677777776654433 33445566778888888775332 33566666665543 2344555666778888
Q ss_pred HhccCCCH-HHHHHHHHhhc---C-CCC-cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccc-hhhHHH
Q psy6263 470 AYAGTKRQ-EVVTLLLPVLT---D-RKS-TPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGH-YSRFLP 542 (913)
Q Consensus 470 ay~Gs~~e-~v~e~L~~~L~---d-~~~-~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~-i~r~~~ 542 (913)
++...++- +..+.+...+. . ... .. ....+...+|.++.-.++.+-....++...+.... ..+.. ......
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 179 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLP-MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS-YQPQQQLQCLAM 179 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTST-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-SCGGGGHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc-cCcHHHHHHHHH
Confidence 88877773 34444333332 1 111 01 12245566888888888877776666655542110 11101 111223
Q ss_pred HHHHHHhcCCcccHHHHHHHHhc----CCChhhhhHHH--HHHHHHHhccCCHHHHHHHHhhhh
Q psy6263 543 LALAITYLGKKDAIDTTLAALEV----LPDPFRSMAKM--MLKMCAYAGSGDVLVVQEFLHVCS 600 (913)
Q Consensus 543 lgLgLl~~G~~e~~~~ll~~L~~----~~~pi~r~~~~--~~lglAyaGTGn~~~Iq~LLh~~~ 600 (913)
+|......|+-+.+...++.... ...+. ..... .+.+..|...|+......++.-+.
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHS-DWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 33334445666666666665432 22221 11111 234445788999877776665543
No 113
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=70.03 E-value=93 Score=31.12 Aligned_cols=123 Identities=13% Similarity=0.035 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhcCcccccccHHHHHHHHhc----cCChhHHhHhHHHHHHhhcCCCc-hhHHHHHHh---hc-cCccHH
Q psy6263 656 QAVAALGVAVVALGEEIGSEMSTRIFGQLGR----YGEPTVRRAVPLAIALCSMSNPA-LNVIDVLNK---YS-HDLDEE 726 (913)
Q Consensus 656 ~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~----~~~~~vR~~a~LALgL~~as~~~-~~vid~L~~---~s-~D~d~~ 726 (913)
.+...+|.++...|+ .+.+...+...++ .+++.....+-..+|.++...++ ..+++.+.+ .. ...+..
T Consensus 184 ~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGN---FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 260 (338)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh
Confidence 345667888887775 3455655555543 34444444455555655543322 233333332 22 233444
Q ss_pred HHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHh--cCChhHHHHHHHHHHHhhcCCCc
Q psy6263 727 VAHNAIFSMGLVGAGTNNA-RLATMLRQLAQYH--VKNTGHLFMVRIAQGLTHMGKGT 781 (913)
Q Consensus 727 Vr~~AiiALGlV~aGtnn~-ri~~~Lr~L~~~~--~~d~~~~f~~~iAqGLl~~Gkg~ 781 (913)
....+...+|.+....++. +-...+++..... ..++.....+...+|.++.-.|.
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4455666777777666653 2333333322221 23444444455555655554444
No 114
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=69.90 E-value=1.5e+02 Score=33.53 Aligned_cols=101 Identities=14% Similarity=-0.000 Sum_probs=60.7
Q ss_pred HHHHHHHHhccCChh----HHhHhHHHHHHhhc---CCCch-------hHHHHHHhhccCccHHHHHHHHHHHHHhhCCC
Q psy6263 677 STRIFGQLGRYGEPT----VRRAVPLAIALCSM---SNPAL-------NVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGT 742 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~----vR~~a~LALgL~~a---s~~~~-------~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGt 742 (913)
+...+-.|+++.++. ++..++-+|.-++. +++.. .++..|-++..+.+..|+.+|.-+++-+.+|+
T Consensus 331 al~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~ 410 (458)
T 3nmz_A 331 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 410 (458)
T ss_dssp HHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC
T ss_pred cHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC
Confidence 455566677766543 77777777766654 55432 45677888877888899999999999998775
Q ss_pred ChhH--HH--HHHHHHHHH-hcCChhHHHHHHHHHHHhhc
Q psy6263 743 NNAR--LA--TMLRQLAQY-HVKNTGHLFMVRIAQGLTHM 777 (913)
Q Consensus 743 nn~r--i~--~~Lr~L~~~-~~~d~~~~f~~~iAqGLl~~ 777 (913)
.+-+ +. ..+..|... ..+++..+..+..|+.=+..
T Consensus 411 ~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 411 PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 4321 10 011112211 24566666666666554443
No 115
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=68.76 E-value=1.4e+02 Score=32.72 Aligned_cols=88 Identities=15% Similarity=0.011 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcC--CcccHHHHHHHHhc-CCChhhhhHH
Q psy6263 499 FAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLG--KKDAIDTTLAALEV-LPDPFRSMAK 575 (913)
Q Consensus 499 ~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G--~~e~~~~ll~~L~~-~~~pi~r~~~ 575 (913)
.+-..+|.++...++.+.+...++.+.+. .. ... +-..+|.++.. +-+.+...++.... .++. ...
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ 312 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINL-----HP-TPN--SYIFLALTLADKENSQEFFKFFQKAVDLNPEY---PPT 312 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CC-CHH--HHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC---HHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc-----CC-Cch--HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC---HHH
Confidence 35667787887778776666666655542 12 211 22234555544 44455555554433 2221 123
Q ss_pred HHHHHHHHhccCCHHHHHHHHh
Q psy6263 576 MMLKMCAYAGSGDVLVVQEFLH 597 (913)
Q Consensus 576 ~~~lglAyaGTGn~~~Iq~LLh 597 (913)
...+|..|...|+.......+.
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHH
Confidence 4567778888888644444333
No 116
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=67.63 E-value=36 Score=44.29 Aligned_cols=143 Identities=15% Similarity=0.206 Sum_probs=80.3
Q ss_pred HHHHHHheeccCcCchhhhhhhhhcCCCCCCCCcChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHhccC------
Q psy6263 104 CSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATNKYEKPQLLELIEDIIQFDMKHN------ 177 (913)
Q Consensus 104 a~i~S~l~~~~~~~~~~~L~y~L~~~~~~~~~wg~eYvr~l~~~i~~~y~~~~~~~~~L~~lv~~iv~~~l~~n------ 177 (913)
=+=+..||++++ ++..|+.--..+. ...|.|..-..++.+.. =.++.-+.+.||+.++
T Consensus 1358 W~elv~LY~~~~-e~dnA~~tm~~h~---~~a~~~~~Fk~~i~kv~------------n~elyykai~Fyl~~~P~~lnd 1421 (1630)
T 1xi4_A 1358 WAELVFLYDKYE-EYDNAIITMMNHP---TDAWKEGQFKDIITKVA------------NVELYYRAIQFYLEFKPLLLND 1421 (1630)
T ss_pred HHHHHHHHHhcc-cHHHHHHHHHhcc---HhhhhhHHHHHHhcccc------------cHHHHHHHHHHHHhhChHHHHH
Confidence 345668888888 8888887666542 45677777665443211 1334445555555555
Q ss_pred ---------CHHHHHHHHHhhCchhhHHHHHhc---cChHHHH-----HHHHh---------hccc--CCCh------hh
Q psy6263 178 ---------AEIQACDLLMEIDHLELLDKHMDV---TNYPRVC-----LYLSN---------CALY--VEEP------ER 223 (913)
Q Consensus 178 ---------~e~eAidlalE~~~ld~i~~~v~~---~~~~ri~-----~Yl~~---------~~~~--~~~~------~~ 223 (913)
++.-+|.+....+.+.++++|+.. .|...|. +|+.. .-.| +... ++
T Consensus 1422 Ll~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lek 1501 (1630)
T 1xi4_A 1422 LLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEK 1501 (1630)
T ss_pred HHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhh
Confidence 556666666666666666666542 1111111 11110 0000 0000 22
Q ss_pred HH---HHHHHHHHHhc-------------cCCHHHHHHHHHhcCCchhHHHHHhc
Q psy6263 224 SV---ITNGVLNNYLK-------------FKEYPRALTLALQLNDEPSVLKIFQL 262 (913)
Q Consensus 224 ~~---vl~~~~~iy~~-------------~~~~~~al~~al~L~d~~~v~~i~~~ 262 (913)
.+ +-+++.-+|.+ -+.|-+|+.++...+|.+.+++++.=
T Consensus 1502 heLl~frrIAa~ly~~n~~~~~ai~l~k~d~l~~dAm~~a~~S~d~e~~e~ll~~ 1556 (1630)
T 1xi4_A 1502 HELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQW 1556 (1630)
T ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22 23555555554 45788888888889999988887774
No 117
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=67.43 E-value=1.2e+02 Score=31.53 Aligned_cols=273 Identities=11% Similarity=0.003 Sum_probs=133.1
Q ss_pred HHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccch--h
Q psy6263 463 AVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHY--S 538 (913)
Q Consensus 463 A~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i--~ 538 (913)
+.+-+|.++.-.++ +++.+.+...+. ++. ..+....+-..+|.++.-.++.+-....++.+.+... ...+.+. .
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~ 88 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR-TIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-hccccHHHHH
Confidence 44556666666666 355555555554 222 2232335667888888888876555444443322100 0111011 1
Q ss_pred hHHHHHHHHHhcCCcccHHHHHHH----HhcCCChhhhhHHHHHHHHHHhccCC--------------------HHHHHH
Q psy6263 539 RFLPLALAITYLGKKDAIDTTLAA----LEVLPDPFRSMAKMMLKMCAYAGSGD--------------------VLVVQE 594 (913)
Q Consensus 539 r~~~lgLgLl~~G~~e~~~~ll~~----L~~~~~pi~r~~~~~~lglAyaGTGn--------------------~~~Iq~ 594 (913)
-...+|..+...|.-+.+...++. .....++.........+|..|...|+ .....+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 122334444445655554444333 23334554445556677888888877 322222
Q ss_pred HHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCccccc
Q psy6263 595 FLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGS 674 (913)
Q Consensus 595 LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~ 674 (913)
.+.-+..... +. .+......+...+|.++...|+ .
T Consensus 169 ~~~~al~~~~------------------------------------~~------~~~~~~~~~~~~la~~~~~~g~---~ 203 (406)
T 3sf4_A 169 FYEENLSLVT------------------------------------AL------GDRAAQGRAFGNLGNTHYLLGN---F 203 (406)
T ss_dssp HHHHHHHHHH------------------------------------HT------TCHHHHHHHHHHHHHHHHHHTB---H
T ss_pred HHHHHHHHHH------------------------------------hc------cCcHHHHHHHHHHHHHHHHccC---H
Confidence 2211111000 00 0000023355678888888875 3
Q ss_pred ccHHHHHHHHhc----cCChhHHhHhHHHHHHhhcCCCc-hhHHHHHHh---hc-cCccHHHHHHHHHHHHHhhCCCChh
Q psy6263 675 EMSTRIFGQLGR----YGEPTVRRAVPLAIALCSMSNPA-LNVIDVLNK---YS-HDLDEEVAHNAIFSMGLVGAGTNNA 745 (913)
Q Consensus 675 em~~r~~~~Ll~----~~~~~vR~~a~LALgL~~as~~~-~~vid~L~~---~s-~D~d~~Vr~~AiiALGlV~aGtnn~ 745 (913)
+.+...+...++ .+++.....+-..+|.++...++ ..++..+.+ +. ...+......+...+|.+....++.
T Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 283 (406)
T 3sf4_A 204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 283 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH
Confidence 456666655553 34444444455666666654433 234444433 22 2233443445667777777766653
Q ss_pred -HHHHHHHHHHHHh--cCChhHHHHHHHHHHHhhcCCCce
Q psy6263 746 -RLATMLRQLAQYH--VKNTGHLFMVRIAQGLTHMGKGTV 782 (913)
Q Consensus 746 -ri~~~Lr~L~~~~--~~d~~~~f~~~iAqGLl~~Gkg~~ 782 (913)
+....+++..... ..++.....+...+|.++...|..
T Consensus 284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 2233333322222 234444455666677777666654
No 118
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=65.42 E-value=1.4e+02 Score=31.33 Aligned_cols=208 Identities=12% Similarity=-0.037 Sum_probs=105.9
Q ss_pred HHHHHhhhhh--cccCCCccccccccccC----ch--hhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcC---CCHHH
Q psy6263 391 SAAASLGLIY--LWDVDGGLTPIDKYLYT----SE--DYIKAGALLALGIVNCGVRNECDPALALLSDYVLN---DSITL 459 (913)
Q Consensus 391 sA~aslGlI~--~~~~~~~l~~l~~yL~s----~~--~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~---~~~~v 459 (913)
.+...+|.++ .|+.+++...+.+-+.. .. ......+...+|.++...+ +.+.+...+..-+.- ..+..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhccCcHH
Confidence 3344455443 45666665555443321 11 1234455566777765433 346677777765542 11212
Q ss_pred HHHHHHHHHHHhccCCCH-HHHHHHHHhh---cCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCccccc
Q psy6263 460 RIGAVLGLGLAYAGTKRQ-EVVTLLLPVL---TDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDG 535 (913)
Q Consensus 460 ~~gA~LGLGlay~Gs~~e-~v~e~L~~~L---~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e 535 (913)
...+...+|.++...++- +..+.+...+ ........+.....++.+.+++..++.+.....++...+..... .+-
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~ 251 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN-NHF 251 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT-CGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc-chh
Confidence 335667788888877774 4444444433 22222222222233456666777888777666666554321100 010
Q ss_pred chhhHHHHHHHHHhcCCcccHHHHHHHHh----cCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhh
Q psy6263 536 HYSRFLPLALAITYLGKKDAIDTTLAALE----VLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCS 600 (913)
Q Consensus 536 ~i~r~~~lgLgLl~~G~~e~~~~ll~~L~----~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~ 600 (913)
.......++-.++..|+.+++...++... ....+....-..+.+|.+|...|+.......+.-+.
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 01112333445555666666666555443 233333333355678899999999866665555443
No 119
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=65.26 E-value=1.3e+02 Score=35.45 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=68.5
Q ss_pred CCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHH
Q psy6263 436 GVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHE 515 (913)
Q Consensus 436 G~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~ 515 (913)
|..|..+ ..+.|..-|-+++=.+||||++||.- .|+.. . . +| |- ....|.+
T Consensus 168 ~~eWPfq-fcE~L~~DLFdp~WEiRHGAALGLRE------------ILR~h-G--~-------GA----GR--~~~~N~D 218 (800)
T 3oc3_A 168 PIENVLD-FFEQISDNLLSYEWYKRHGAFLAFAA------------MFSEI-D--N-------GG----DI--QIRVDSK 218 (800)
T ss_dssp CCCSGGG-TTHHHHHHTTCSSHHHHHHHHHHHHH------------HHHHC-C-----------------C--CCCCCTT
T ss_pred CCCCHHH-HHHHHHHHhcCcchhhhhHHHHHHHH------------HHHHh-c--c-------CC----ce--eccccHH
Confidence 4446656 77888888888877899999988743 22221 0 0 11 11 1445557
Q ss_pred HHHHHHHHHHcCC-----cCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHh---cCCChhhhhHHHHHHHHHHh
Q psy6263 516 VASAILQTLIELP-----VSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALE---VLPDPFRSMAKMMLKMCAYA 584 (913)
Q Consensus 516 v~~~lL~~l~~~~-----~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~---~~~~pi~r~~~~~~lglAya 584 (913)
++-+++.++.-+. ..+.-. |++-.+|-+||.+ .--.+. -.++..|. ..+.--+|+|+++ |+=|.
T Consensus 219 LAvRLLCVLALDRFGDYVSDqVVA-PVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLL--GLKYL 290 (800)
T 3oc3_A 219 LFSKIYEILVTDKFNDFVDDRTVA-PVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLI--ALGYL 290 (800)
T ss_dssp HHHHHHHHHHHBCCBBCSSSSCBC-HHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHH--HHHHT
T ss_pred HHHHHHHHHHhccccccccCeeee-ehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHH--HHHHH
Confidence 7778887776321 112223 7888888888887 444433 23344443 3445578999876 45576
No 120
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=62.43 E-value=89 Score=28.16 Aligned_cols=129 Identities=17% Similarity=0.081 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhccCCC-HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchh
Q psy6263 460 RIGAVLGLGLAYAGTKR-QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYS 538 (913)
Q Consensus 460 ~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~ 538 (913)
+.-+...+|.++...++ ++..+.+...+....... .+-..+|.++.-.++.+.....++.+.+..+ . ...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~-~~~ 77 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV----DVALHLGIAYVKTGAVDRGTELLERSLADAP----D-NVK 77 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----T-CHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----C-CHH
Confidence 34455667777777666 456666665554221122 3556778888888877666666665554211 1 222
Q ss_pred hHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhh
Q psy6263 539 RFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVC 599 (913)
Q Consensus 539 r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~ 599 (913)
-...+|..+...|+-+.+...++......... ......+|.+|...|+.....+.+.-+
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKVAEANPIN--FNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh--HHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 33445555666677777766666554332111 133466788889999875444444433
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=62.30 E-value=80 Score=32.54 Aligned_cols=125 Identities=10% Similarity=0.006 Sum_probs=56.9
Q ss_pred HHHHHHHHHhccCCCH-HHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhh
Q psy6263 462 GAVLGLGLAYAGTKRQ-EVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSR 539 (913)
Q Consensus 462 gA~LGLGlay~Gs~~e-~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r 539 (913)
.+.+.+|.++...++- ++.+.+...+. ++.. . .+-+.||.+++..++.+-....++.+.... . + ....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-~----~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p-~-~~~~ 187 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-G----EIGLLLAETLIALNRSEDAEAVLXTIPLQD---Q-D-TRYQ 187 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-H----HHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---C-S-HHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-h----hHHHHHHHHHHHCCCHHHHHHHHHhCchhh---c-c-hHHH
Confidence 4556666666666553 44444555543 3221 1 355666777777776655555554443211 0 1 2222
Q ss_pred HHHHHHHHHhcCCcccH-HHHHHHHhcCCChhhhhHHHHHHHHHHhccCCH-HHHHHHHhhh
Q psy6263 540 FLPLALAITYLGKKDAI-DTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDV-LVVQEFLHVC 599 (913)
Q Consensus 540 ~~~lgLgLl~~G~~e~~-~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~-~~Iq~LLh~~ 599 (913)
.+..++.+.-.|+.+.+ ..+-+.+...++.. .+.+.+|.+|...|+. .+++.+...+
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~---~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENPEDA---ALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCCccH---HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22233333333443322 22223333333221 2234556666666665 4444444444
No 122
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=60.30 E-value=3e+02 Score=33.48 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=44.0
Q ss_pred HHHHHHHhccCChhHHhHhHHHHHHhhcCCCc--------hhHHHHHHhhccC--ccHHHHHHHHHHHHHh
Q psy6263 678 TRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA--------LNVIDVLNKYSHD--LDEEVAHNAIFSMGLV 738 (913)
Q Consensus 678 ~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~--------~~vid~L~~~s~D--~d~~Vr~~AiiALGlV 738 (913)
+..+=.|++..|+.+|++|+-||+.+..++|. ...++.|..+.++ .+.++++.++..+-=+
T Consensus 656 L~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL 726 (778)
T 3opb_A 656 FNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGL 726 (778)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 33566678899999999999999999766654 2567777777666 6777776655554433
No 123
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=58.71 E-value=28 Score=41.25 Aligned_cols=50 Identities=8% Similarity=-0.053 Sum_probs=36.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhcCCchhHHHHHhccCChhHHHHHHHHHhhc
Q psy6263 226 ITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQ 279 (913)
Q Consensus 226 vl~~~~~iy~~~~~~~~al~~al~L~d~~~v~~i~~~~~d~~~~~Qiaf~lar~ 279 (913)
.+..+.++..+.+++-.|..++++++|++...+++.++.. +..|+.|||+
T Consensus 725 ~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~----~~~A~~lA~~ 774 (814)
T 3mkq_A 725 GLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQR----FSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC----HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCC----hHHHHHHHHH
Confidence 4455566777778888888888888888888888887643 4555666664
No 124
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=57.64 E-value=2.3e+02 Score=31.30 Aligned_cols=278 Identities=13% Similarity=0.071 Sum_probs=143.5
Q ss_pred CcccccccchhhHHHHHHhhhhhcc------cCCCccccccccccCchhhHHHHHHHHHHHHhc---CCCCCchhHHHHH
Q psy6263 378 NKWMYKNKQHGMLSAAASLGLIYLW------DVDGGLTPIDKYLYTSEDYIKAGALLALGIVNC---GVRNECDPALALL 448 (913)
Q Consensus 378 ~~wl~k~~~~~k~sA~aslGlI~~~------~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~a---G~~~e~d~~l~lL 448 (913)
..|+.+.-+-+-..|...+|.++.. |.++|+..+.+-... ...-|.+.+|.++. |+..+.+.++..+
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 4466555544555566677776642 444454443332222 23457788888875 2345556777777
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcc----CCC-HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhc----CCCHHHHHH
Q psy6263 449 SDYVLNDSITLRIGAVLGLGLAYAG----TKR-QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVG----TGYHEVASA 519 (913)
Q Consensus 449 ~~~L~~~~~~v~~gA~LGLGlay~G----s~~-e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lG----s~n~~v~~~ 519 (913)
..-++..+ .-+...||.+|.- ..+ +...+.+...+.... . .+.+.||.+|.- .++.+....
T Consensus 175 ~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~----~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 175 SKAAEQGN----VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD--E----LGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--H----HHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHCCC----HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC--H----HHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 77666544 2466677777763 344 345555555543221 1 466778888773 556555555
Q ss_pred HHHHHHcCCcCcccccchhhHHHHHHHHHhcC----Cc--ccHHHHHHHHhcCCChhhhhHHHHHHHHHHhcc-----CC
Q psy6263 520 ILQTLIELPVSELQDGHYSRFLPLALAITYLG----KK--DAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGS-----GD 588 (913)
Q Consensus 520 lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G----~~--e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGT-----Gn 588 (913)
.++...+. .+ . .+..-+|.++.. .+ +.+-..++......++. +...+|..|... +|
T Consensus 245 ~~~~a~~~-----~~-~---~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~----a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 245 LFSQSAEQ-----GN-S---IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSD----GQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp HHHHHHTT-----TC-H---HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHH----HHHHHHHHHHHCBTTBCCC
T ss_pred HHHHHHHC-----CC-H---HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHHHHHcCCCCCcCC
Confidence 55555442 11 1 122345555432 22 34444444444444442 344566666544 56
Q ss_pred HHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhc
Q psy6263 589 VLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVAL 668 (913)
Q Consensus 589 ~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ 668 (913)
.....+.+.-+.+.- ...+...||..+...
T Consensus 312 ~~~A~~~~~~a~~~~--------------------------------------------------~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 312 REQAISWYTKSAEQG--------------------------------------------------DATAQANLGAIYFRL 341 (490)
T ss_dssp HHHHHHHHHHHHHTT--------------------------------------------------CHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC--------------------------------------------------CHHHHHHHHHHHHhC
Confidence 543333333332210 112345577776654
Q ss_pred CcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcC----CC-chhHHHHHHhhccCccHHHHHHHHHHHHHhhC
Q psy6263 669 GEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMS----NP-ALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGA 740 (913)
Q Consensus 669 ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as----~~-~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~a 740 (913)
|.+-..+.+.+.+.+-.+.+++. +.+.||.++.. .. -..++..+.+-....+.. |...||.+..
T Consensus 342 g~~~~~~~A~~~~~~a~~~~~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~----a~~~Lg~~y~ 410 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKGEKA----AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSA----AQVQLGEIYY 410 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH----HHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHCCCHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHH----HHHHHHHHHH
Confidence 42222455777777777776654 33455555532 22 236777776655433332 4445555543
No 125
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=57.21 E-value=2.9e+02 Score=32.43 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhcCChhHHH
Q psy6263 747 LATMLRQLAQYHVKNTGHLF 766 (913)
Q Consensus 747 i~~~Lr~L~~~~~~d~~~~f 766 (913)
+..-+|.|+... .+...++
T Consensus 648 ~~~ayr~la~~~-~~~~~r~ 666 (681)
T 2pzi_A 648 VEASLRSLARVA-PTQRHRY 666 (681)
T ss_dssp HHHHHHHHHHHC-SSHHHHH
T ss_pred HHHHHHHHHHhC-CChHHHH
Confidence 555666666533 3333443
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=57.03 E-value=48 Score=35.28 Aligned_cols=132 Identities=11% Similarity=-0.012 Sum_probs=62.5
Q ss_pred HHHHHHhhhhhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy6263 390 LSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGL 469 (913)
Q Consensus 390 ~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGl 469 (913)
+....+.-++-.|+.++|.++++.-+.....+. +.+.+|+++....+ -++++..|.+.+...++.....+.+-||.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~---~~~~~a~l~~~~~r-~~dA~~~l~~a~~~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHL---VAWMKAVVYGAAER-WTDVIDQVKSAGKWPDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH---HHHHHHHHHHHTTC-HHHHHHHHTTGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHcCC-HHHHHHHHHHhhccCCcccHHHHHHHHHH
Confidence 333344445556666666666665554333333 45555555543222 24566666555444444444445555555
Q ss_pred HhccCCCH-HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q psy6263 470 AYAGTKRQ-EVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIE 526 (913)
Q Consensus 470 ay~Gs~~e-~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~ 526 (913)
++...++. +..+.+...+..+..+ ....-+.+.+|+++...|+.+-...+++.+..
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P-~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGE-ACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTT-TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555553 4444444443211100 00112445555555555555555555555543
No 127
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=56.84 E-value=2.1e+02 Score=34.38 Aligned_cols=95 Identities=14% Similarity=-0.035 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHH
Q psy6263 423 KAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFA 500 (913)
Q Consensus 423 k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A 500 (913)
.+-|+..+|.++...++ .+.+++.+..-|.-.... ..+...||.+|...++ +++.+.+...+. ++.. . .+
T Consensus 8 ~a~al~nLG~~~~~~G~-~~eAi~~~~kAl~l~P~~--~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~-~----~a 79 (723)
T 4gyw_A 8 HADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEF--AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-A----DA 79 (723)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H----HH
T ss_pred cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H----HH
Confidence 34566666666653332 345666655555432221 2345556666655555 344444444443 2221 1 24
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q psy6263 501 AVAASLIYVGTGYHEVASAILQTLI 525 (913)
Q Consensus 501 ~laLGLi~lGs~n~~v~~~lL~~l~ 525 (913)
-+.||.++.-.++.+-+...++.+.
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl 104 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAI 104 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666555544444443333
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=56.44 E-value=67 Score=30.03 Aligned_cols=104 Identities=15% Similarity=0.060 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhc----CCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHhhc---CCCC
Q psy6263 421 YIKAGALLALGIVNCGVRNECDPALALLSDYVL----NDSITLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLT---DRKS 492 (913)
Q Consensus 421 ~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~----~~~~~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~---d~~~ 492 (913)
...+-++..+|.++...+ +.+.++..+..-+. ..+.....-+...+|.+|...++- +..+.+...+. ....
T Consensus 23 ~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 101 (203)
T 3gw4_A 23 ATASGARFMLGYVYAFMD-RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE 101 (203)
T ss_dssp TTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence 345677778888876443 33567776666544 234556667788899999888774 44444444332 1111
Q ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy6263 493 TPEVVAFAAVAASLIYVGTGYHEVASAILQTLI 525 (913)
Q Consensus 493 ~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~ 525 (913)
.......+-..+|.++.-.++.+-....++...
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 121223566778888888777665544444433
No 129
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=55.74 E-value=58 Score=42.47 Aligned_cols=104 Identities=10% Similarity=0.063 Sum_probs=70.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhhC--------------------chhhHHHHHhccChHH---HHHHHHhhcccCCChh
Q psy6263 166 IEDIIQFDMKHNAEIQACDLLMEID--------------------HLELLDKHMDVTNYPR---VCLYLSNCALYVEEPE 222 (913)
Q Consensus 166 v~~iv~~~l~~n~e~eAidlalE~~--------------------~ld~i~~~v~~~~~~r---i~~Yl~~~~~~~~~~~ 222 (913)
..++..++.+.|++.+|+.++..++ +++.++.+++..+... +-.|+.
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le---------- 1206 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCY---------- 1206 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHH----------
Confidence 3446777888889999988885533 4444555554433321 111211
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHhcCCchhHHHHHhccCChhHHHHHHHHHhhc
Q psy6263 223 RSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQ 279 (913)
Q Consensus 223 ~~~vl~~~~~iy~~~~~~~~al~~al~L~d~~~v~~i~~~~~d~~~~~Qiaf~lar~ 279 (913)
...-++-+...|.+-+.|..+..|.+++++.+...+.+.+..++..=+|++|.+.++
T Consensus 1207 ~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1207 DEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 1263 (1630)
T ss_pred hcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhh
Confidence 222344556677777899999999999999999999999887777778888777553
No 130
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=55.48 E-value=3.5e+02 Score=34.00 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=46.8
Q ss_pred hHHHHHHHhhcCCCH-HHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCC--CcHHHHHHHHHHHHHHHh------cCCC
Q psy6263 443 PALALLSDYVLNDSI-TLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRK--STPEVVAFAAVAASLIYV------GTGY 513 (913)
Q Consensus 443 ~~l~lL~~~L~~~~~-~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~--~~~ev~~~A~laLGLi~l------Gs~n 513 (913)
+++..+.+.+.+..- .....-+++.++ ++-.-+++..+.+.+.+..+. ....+...|.||+|-+-= +.|.
T Consensus 356 ~a~~~i~~~i~~~~l~~~ea~~~l~~~~-~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~ 434 (1056)
T 1lsh_A 356 EALLFLKRTLASEQLTSAEATQIVASTL-SNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP 434 (1056)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 578888888876542 233333333333 333678888888888876422 122344467777764322 2345
Q ss_pred HHHHHHHHHHHHc
Q psy6263 514 HEVASAILQTLIE 526 (913)
Q Consensus 514 ~~v~~~lL~~l~~ 526 (913)
.+++..+.+.+.+
T Consensus 435 ~~~v~~i~~~l~~ 447 (1056)
T 1lsh_A 435 DELLQPLHDLLSQ 447 (1056)
T ss_dssp GGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 131
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=53.81 E-value=1.8e+02 Score=28.83 Aligned_cols=154 Identities=10% Similarity=-0.072 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhcCCcccHHHHHHHHhc-CCChhhhhHHHHHHHHHHhccCCH-HHHHHHHhhhhccCCCCCcccccccc
Q psy6263 538 SRFLPLALAITYLGKKDAIDTTLAALEV-LPDPFRSMAKMMLKMCAYAGSGDV-LVVQEFLHVCSEHYTPTTSSAKEETS 615 (913)
Q Consensus 538 ~r~~~lgLgLl~~G~~e~~~~ll~~L~~-~~~pi~r~~~~~~lglAyaGTGn~-~~Iq~LLh~~~~~~~~~~~~~~~~~~ 615 (913)
......|..+.-.|+-+.+...++.+.. .++.-...-+.+-+|.+|...|+. .++..+-..+.....
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~----------- 84 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI----------- 84 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-----------
Confidence 3344556666666666666666665544 333222234556788888889986 445444444432110
Q ss_pred cccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhh--------cCcccccccHHHHHHHHhcc
Q psy6263 616 ATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVA--------LGEEIGSEMSTRIFGQLGRY 687 (913)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~--------~ge~ig~em~~r~~~~Ll~~ 687 (913)
++. ...+...+|.++.. .|+ .+.|...+.+++..
T Consensus 85 ---------------------------------~~~--~~~a~~~lg~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 85 ---------------------------------DPR--VPQAEYERAMCYYKLSPPYELDQTD---TRKAIEAFQLFIDR 126 (261)
T ss_dssp ---------------------------------CTT--HHHHHHHHHHHHHHHCCCTTSCCHH---HHHHHHHHHHHHHH
T ss_pred ---------------------------------Cch--hHHHHHHHHHHHHHhcccccccchh---HHHHHHHHHHHHHH
Confidence 011 22345567888776 543 45677888887764
Q ss_pred CChhHH-hHhH--------------HHHHHhhcCCCc-hhHHHHHHhhc-cCccHHHHHHHHHHHHHhhC
Q psy6263 688 GEPTVR-RAVP--------------LAIALCSMSNPA-LNVIDVLNKYS-HDLDEEVAHNAIFSMGLVGA 740 (913)
Q Consensus 688 ~~~~vR-~~a~--------------LALgL~~as~~~-~~vid~L~~~s-~D~d~~Vr~~AiiALGlV~a 740 (913)
...+.. ..+- +-+|.++...++ ..++..+.+.. .+++......+.+-+|.+..
T Consensus 127 ~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 127 YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 322211 1111 566766654443 35666666653 24443323445666666554
No 132
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=53.41 E-value=1.7e+02 Score=28.46 Aligned_cols=101 Identities=9% Similarity=0.069 Sum_probs=58.6
Q ss_pred hccccccCCCchhhhhhhHHHHHHHHhhcCCChhHHHHHHHHHHheeccCcCchhhhhhhhhcCCCCCCCCcChHHHHHH
Q psy6263 66 STTSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLE 145 (913)
Q Consensus 66 ~t~s~tsvpkplk~l~~~~~~l~~~ye~~~~~~~r~l~a~i~S~l~~~~~~~~~~~L~y~L~~~~~~~~~wg~eYvr~l~ 145 (913)
.+++...+++.+...+.-+..+++..... .+..-.+...+..+++..+ ++.+++.+--.+
T Consensus 10 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a----------------- 69 (283)
T 3edt_B 10 HSSGLVPRGSAVPLCKQALEDLEKTSGHD--HPDVATMLNILALVYRDQN-KYKEAAHLLNDA----------------- 69 (283)
T ss_dssp ---CCSCSSSHHHHHHHHHHHHHHHHCSS--SHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHH-----------------
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHH-----------------
Confidence 45667788888887777777777766422 1234555566777778888 788887764433
Q ss_pred HHHHHHHHhc-cCChhHHHHHHHHHHHHHhccCCHHHHHHHHHhh
Q psy6263 146 AEIAEEWATN-KYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEI 189 (913)
Q Consensus 146 ~~i~~~y~~~-~~~~~~L~~lv~~iv~~~l~~n~e~eAidlalE~ 189 (913)
++.+.+. ....+........+-..+...+.+.+|+...-++
T Consensus 70 ---l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 111 (283)
T 3edt_B 70 ---LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 111 (283)
T ss_dssp ---HHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1111111 1223344445555556666777777777766544
No 133
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=52.30 E-value=72 Score=32.92 Aligned_cols=151 Identities=14% Similarity=0.027 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHhhc-CCCCcHHHHHHHHH
Q psy6263 425 GALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLT-DRKSTPEVVAFAAV 502 (913)
Q Consensus 425 GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~-d~~~~~ev~~~A~l 502 (913)
.+.+.+|..+...+ +.+.+.+.+...+...... ..+.++||.++...++. ++.+.+...+. ++ ... ......
T Consensus 118 ~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~P~~--~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~-~~~~~~ 191 (287)
T 3qou_A 118 ELXAQQAMQLMQES-NYTDALPLLXDAWQLSNQN--GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTR-YQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHH-HHHHHH
T ss_pred hhHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCcc--hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chH-HHHHHH
Confidence 34555565544322 2356777777776533222 24677888888888774 55555555543 22 222 112222
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHHHHH
Q psy6263 503 AASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCA 582 (913)
Q Consensus 503 aLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglA 582 (913)
++.+.-.|.. .+.++.+.+.+...+ + ...-...+|..+...|+-+++...++.+...........+-..++..
T Consensus 192 ~~~l~~~~~~-~~a~~~l~~al~~~P-----~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 192 QIELLXQAAD-TPEIQQLQQQVAENP-----E-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHTS-CHHHHHHHHHHHHCT-----T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHhhccc-CccHHHHHHHHhcCC-----c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 2223333332 234444444443321 1 23334455666666777666666555544332222222333445566
Q ss_pred HhccCC
Q psy6263 583 YAGSGD 588 (913)
Q Consensus 583 yaGTGn 588 (913)
|...|+
T Consensus 265 ~~~~g~ 270 (287)
T 3qou_A 265 LAALGT 270 (287)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 666664
No 134
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=51.44 E-value=2e+02 Score=28.77 Aligned_cols=233 Identities=14% Similarity=0.018 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHH
Q psy6263 420 DYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVV 497 (913)
Q Consensus 420 ~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~ 497 (913)
+....-.++.+|..+.... +.+.++..+...+...... ..+...+|.++.-.++ +++.+.+...+. ++. ..
T Consensus 17 ~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~--- 89 (327)
T 3cv0_A 17 PYMYHENPMEEGLSMLKLA-NLAEAALAFEAVCQAAPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DI--- 89 (327)
T ss_dssp GGGGSSCHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH---
T ss_pred chhhhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CH---
Confidence 3344455556666554332 2356777777766533222 2344556777766666 455555555554 222 22
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHH---------HH-HH-Hhc--CCcccHHHHHHHHh
Q psy6263 498 AFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPL---------AL-AI-TYL--GKKDAIDTTLAALE 564 (913)
Q Consensus 498 ~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~l---------gL-gL-l~~--G~~e~~~~ll~~L~ 564 (913)
.+-..+|.++...++.+.+...++.+.+..+... ........ .+ |. ++. |+-+.+...++...
T Consensus 90 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 165 (327)
T 3cv0_A 90 -AVHAALAVSHTNEHNANAALASLRAWLLSQPQYE---QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165 (327)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT---TC--------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH---HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence 3456677778888877666666665554321111 11111000 01 21 222 22234444444433
Q ss_pred c-CCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhh
Q psy6263 565 V-LPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEK 643 (913)
Q Consensus 565 ~-~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (913)
. .++ .......+|..|...|+.....+.+.-+....
T Consensus 166 ~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------------------------------------- 202 (327)
T 3cv0_A 166 EMNPN---DAQLHASLGVLYNLSNNYDSAAANLRRAVELR---------------------------------------- 202 (327)
T ss_dssp HHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------------
T ss_pred hhCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------------------------------
Confidence 2 222 12334567788888998754444443332111
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHh
Q psy6263 644 KDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNK 718 (913)
Q Consensus 644 ~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~ 718 (913)
++ ...+...+|.++...|+ .+.+...+.+.++...........+|......|.. ..++..+.+
T Consensus 203 ------~~--~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 265 (327)
T 3cv0_A 203 ------PD--DAQLWNKLGATLANGNR---PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY-DLAAKQLVR 265 (327)
T ss_dssp ------TT--CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred ------CC--cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH-HHHHHHHHH
Confidence 00 11235567888887775 56678888887775543344333333333333432 234444433
No 135
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=50.66 E-value=1e+02 Score=26.89 Aligned_cols=105 Identities=17% Similarity=-0.002 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhc----CCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHhhc---CC
Q psy6263 419 EDYIKAGALLALGIVNCGVRNECDPALALLSDYVL----NDSITLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLT---DR 490 (913)
Q Consensus 419 ~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~----~~~~~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~---d~ 490 (913)
++...+-++..+|.++....+ .+.++..+...+. ..+......+...+|.+|.-.++- +..+.+...+. ..
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 455667778888888764433 4566776666543 244555667788888888887774 34444443332 21
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy6263 491 KSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLI 525 (913)
Q Consensus 491 ~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~ 525 (913)
. .......+-..+|.++...++.+.....++...
T Consensus 83 ~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 83 K-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 122233566788888888888766555554443
No 136
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=50.59 E-value=2e+02 Score=28.52 Aligned_cols=176 Identities=15% Similarity=0.099 Sum_probs=95.5
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcC------CCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHhhcC--
Q psy6263 419 EDYIKAGALLALGIVNCGVRNECDPALALLSDYVLN------DSITLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLTD-- 489 (913)
Q Consensus 419 ~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~------~~~~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~d-- 489 (913)
+.....-++..+|.++.... +.+.++..+...+.- .+.....-+...+|.+|...++- +..+.+...+.-
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34455667778888775443 346677777776651 13344556677788888777763 444444443321
Q ss_pred ----CCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcc-cccchhhHHHHHHHHHhcC--CcccHHHHHHH
Q psy6263 490 ----RKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSEL-QDGHYSRFLPLALAITYLG--KKDAIDTTLAA 562 (913)
Q Consensus 490 ----~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~-~~e~i~r~~~lgLgLl~~G--~~e~~~~ll~~ 562 (913)
...+ ....+-..+|.++...++.+-+...++.+.+...... .+.+....+-..+|.++.. +-+.+...++.
T Consensus 101 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 101 KTLGKDHP--AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHCTTCH--HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHhCCCCh--HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111 2235677889999988887666555554443100000 0102222223345555544 44455555544
Q ss_pred HhcC------CChhhhhHHHHHHHHHHhccCCHHHHHHHHh
Q psy6263 563 LEVL------PDPFRSMAKMMLKMCAYAGSGDVLVVQEFLH 597 (913)
Q Consensus 563 L~~~------~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh 597 (913)
.... +++.........+|.+|...|+.....+.+.
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 219 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK 219 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4332 2233344456678899999999754444333
No 137
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=50.04 E-value=2.1e+02 Score=31.91 Aligned_cols=77 Identities=16% Similarity=0.098 Sum_probs=44.6
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC--HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy6263 443 PALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR--QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASA 519 (913)
Q Consensus 443 ~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~--e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~ 519 (913)
.++..+......... ..-+.+.+|.+|...++ +++.+.+...+. ++. .. .+-+.||.+|...++.+-+..
T Consensus 86 ~al~~l~~~~~~~~~--~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~----~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 86 KTLQQMEEVLGSAQV--EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LV----EAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHTTCCC--CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhccCch--hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CH----HHHHHHHHHHHHcCCHHHHHH
Confidence 344444444333222 23455566777666554 566666666664 332 12 356678888888888777666
Q ss_pred HHHHHHc
Q psy6263 520 ILQTLIE 526 (913)
Q Consensus 520 lL~~l~~ 526 (913)
.++.+.+
T Consensus 159 ~~~~al~ 165 (474)
T 4abn_A 159 CFSGALT 165 (474)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6666665
No 138
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=49.52 E-value=2.4e+02 Score=29.57 Aligned_cols=106 Identities=14% Similarity=0.064 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhhcCccccccc---HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHH
Q psy6263 656 QAVAALGVAVVALGEEIGSEM---STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAI 732 (913)
Q Consensus 656 ~a~~~Lgiali~~ge~ig~em---~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~Ai 732 (913)
.|.-+|+..+- |.+++++. +...+.-+...+++.++--++=.+|-+..-++...+++.|+++.+..+..|.-.++
T Consensus 94 ~A~r~L~~LLe--~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl 171 (265)
T 3b2a_A 94 KALRALGYLVK--DVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGF 171 (265)
T ss_dssp HHHHHHHHHHT--TCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHH
Confidence 35556776653 55665554 33334445568888888888889999987788899999999999888888887776
Q ss_pred HHHHHhhCCCChhH-HHHHHHHHHHHh-cCChh
Q psy6263 733 FSMGLVGAGTNNAR-LATMLRQLAQYH-VKNTG 763 (913)
Q Consensus 733 iALGlV~aGtnn~r-i~~~Lr~L~~~~-~~d~~ 763 (913)
=++==+..-|+++. +..+++.+...- ++||-
T Consensus 172 ~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~ 204 (265)
T 3b2a_A 172 CLFLNMLNSSADSGHLTLILDEIPSLLQNDNEF 204 (265)
T ss_dssp HHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHH
T ss_pred HHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHH
Confidence 66666666666543 223344444332 55654
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=48.88 E-value=90 Score=33.14 Aligned_cols=134 Identities=12% Similarity=-0.003 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHHHHH
Q psy6263 500 AAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLK 579 (913)
Q Consensus 500 A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~~l 579 (913)
..++++.+++..++.+-...+++.+... ..++. ....+|+-+.-.|+-+.+...++.....++|.....+-+.+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~-----~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA-----GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT-----TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 4455555566666666666666544432 11133 33334443444455567777777666666777666677889
Q ss_pred HHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHH
Q psy6263 580 MCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVA 659 (913)
Q Consensus 580 glAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~ 659 (913)
|+++...|+.....+.++-+.+... ++.. ...+..
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~--------------------------------------------~P~~-~~da~~ 212 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPA--------------------------------------------GEAC-ARAIAW 212 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTT--------------------------------------------TTTT-HHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCC--------------------------------------------Cccc-cHHHHH
Confidence 9999999997444444433321110 0110 122456
Q ss_pred HHHHHHhhcCcccccccHHHHHHHHhcc
Q psy6263 660 ALGVAVVALGEEIGSEMSTRIFGQLGRY 687 (913)
Q Consensus 660 ~Lgiali~~ge~ig~em~~r~~~~Ll~~ 687 (913)
.+|+++...|+ .+.+...|+.+...
T Consensus 213 ~~glaL~~lGr---~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 213 YLAMARRSQGN---ESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---HHHHHHHHHHHHhc
Confidence 78999999886 35677778877664
No 140
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=47.84 E-value=2.7e+02 Score=29.30 Aligned_cols=168 Identities=13% Similarity=0.060 Sum_probs=86.1
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHhhc----CCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHhhc---CCCCcHHHH
Q psy6263 426 ALLALGIVNCGVRNECDPALALLSDYVL----NDSITLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLT---DRKSTPEVV 497 (913)
Q Consensus 426 AllaLGLi~aG~~~e~d~~l~lL~~~L~----~~~~~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~---d~~~~~ev~ 497 (913)
..+-.|..+...+ +.+.++..+..-+. ..++....-+...+|.+|...++- ...+.+...+. .......-.
T Consensus 103 ~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEFDQK-EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 4555566654332 23566666665443 244566667778888888877764 34444444332 111111112
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhH-HHHHHHHHh--cCCcccHHHHHHHHh----cCCChh
Q psy6263 498 AFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRF-LPLALAITY--LGKKDAIDTTLAALE----VLPDPF 570 (913)
Q Consensus 498 ~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~-~~lgLgLl~--~G~~e~~~~ll~~L~----~~~~pi 570 (913)
..+-..||.++...++-+-+...++.+.+... ...+ +.... +-..+|.++ .|+-+.+...++... ...+|.
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~-~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAM-DIQN-DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HcCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 34666888888888876655444443332100 0111 11121 122345554 444444444433322 224454
Q ss_pred hhhHHHHHHHHHHhccCCHHHHHHHHh
Q psy6263 571 RSMAKMMLKMCAYAGSGDVLVVQEFLH 597 (913)
Q Consensus 571 ~r~~~~~~lglAyaGTGn~~~Iq~LLh 597 (913)
. ..+...+|.+|...|+.......+.
T Consensus 260 ~-~~~~~~la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 260 L-PKVLFGLSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4 5566778888888888754444443
No 141
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=47.71 E-value=99 Score=36.41 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=45.3
Q ss_pred HHHHHHHhccCCHHHHH----------HHHHhhCchhhHHHHHhccChHHHHHHHHhhcccCCChhhHHHHHHHHHHHhc
Q psy6263 167 EDIIQFDMKHNAEIQAC----------DLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLK 236 (913)
Q Consensus 167 ~~iv~~~l~~n~e~eAi----------dlalE~~~ld~i~~~v~~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~iy~~ 236 (913)
..+..|+-+++...+|+ .++++.++++.-.++....+ +.+..+.+.+.+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~-------------------~~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDES-------------------AEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCC-------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhhC-------------------cHhHHHHHHHHHHH
Confidence 66666666777666665 34455555554444333221 23455555666666
Q ss_pred cCCHHHHHHHHHhcCCchhHHHHHhccCC
Q psy6263 237 FKEYPRALTLALQLNDEPSVLKIFQLCED 265 (913)
Q Consensus 237 ~~~~~~al~~al~L~d~~~v~~i~~~~~d 265 (913)
..++-.|.+|..+++|.+.+..++...++
T Consensus 694 ~~~~~~A~~~y~~~~d~~~l~~l~~~~~~ 722 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHDLESLFLLHSSFNN 722 (814)
T ss_dssp TTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHccChhhhHHHHHHcCC
Confidence 66666666666666666666666555443
No 142
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=45.75 E-value=2.2e+02 Score=27.63 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhcCcccccccHHHHHHHHhcc
Q psy6263 656 QAVAALGVAVVALGEEIGSEMSTRIFGQLGRY 687 (913)
Q Consensus 656 ~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~ 687 (913)
.+...+|.++...|+ .+.+...+..+...
T Consensus 185 ~a~~~l~~~~~~~g~---~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 185 DALPLMENAYRQMQM---NAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCC---cHHHHHHHHHHHhh
Confidence 355678888888876 45566667666543
No 143
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=44.81 E-value=2.5e+02 Score=28.00 Aligned_cols=96 Identities=16% Similarity=0.013 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccch
Q psy6263 460 RIGAVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHY 537 (913)
Q Consensus 460 ~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i 537 (913)
..-..+.+|..+...++ +++.+.+...+. ++. .. .+-+.+|.++.-.++.+-+...++.+.+..+ . ..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~-~~ 89 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-RE----EAWRSLGLTQAENEKDGLAIIALNHARMLDP----K-DI 89 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----T-CH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc----C-CH
Confidence 33445666777766666 456666665554 222 22 2445677777777776665555555544211 1 22
Q ss_pred hhHHHHHHHHHhcCCcccHHHHHHHHhc
Q psy6263 538 SRFLPLALAITYLGKKDAIDTTLAALEV 565 (913)
Q Consensus 538 ~r~~~lgLgLl~~G~~e~~~~ll~~L~~ 565 (913)
.....+|..+...|.-+.+...++....
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~ 117 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLL 117 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2334445555556666666666655443
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=44.36 E-value=2e+02 Score=26.77 Aligned_cols=90 Identities=10% Similarity=0.060 Sum_probs=38.7
Q ss_pred HHHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhh
Q psy6263 462 GAVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSR 539 (913)
Q Consensus 462 gA~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r 539 (913)
.+...+|.++...++ ++..+.+...+. ++.. . .+-+.+|.++...++.+-.-..++.+....+ + ...-
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-~----~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P---~--~~~~ 106 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-V----DYIMGLAAIYQIKEQFQQAADLYAVAFALGK---N--DYTP 106 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS---S--CCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHHccHHHHHHHHHHHHhhCC---C--CcHH
Confidence 455566666655555 244444444443 2221 1 2344555555555554333333333332110 0 1222
Q ss_pred HHHHHHHHHhcCCcccHHHHHH
Q psy6263 540 FLPLALAITYLGKKDAIDTTLA 561 (913)
Q Consensus 540 ~~~lgLgLl~~G~~e~~~~ll~ 561 (913)
...+|..+..+|+-+.+...++
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 3344555555555544444333
No 145
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=43.66 E-value=3.6e+02 Score=29.58 Aligned_cols=278 Identities=13% Similarity=0.118 Sum_probs=146.5
Q ss_pred CcccccccchhhHHHHHHhhhhhc------ccCCCccccccccccCchhhHHHHHHHHHHHHhc---CCCCCchhHHHHH
Q psy6263 378 NKWMYKNKQHGMLSAAASLGLIYL------WDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNC---GVRNECDPALALL 448 (913)
Q Consensus 378 ~~wl~k~~~~~k~sA~aslGlI~~------~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~a---G~~~e~d~~l~lL 448 (913)
..|+.+.-+-+-..|...||.++. +|.++|+..+.+-... ...-|.+.||.++. |+..+.+.++..+
T Consensus 63 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 138 (490)
T 2xm6_A 63 MDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWF 138 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 346655544444566777887764 2444454433332221 23456677787775 2344556777777
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcc----CCC-HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhc----CCCHHHHHH
Q psy6263 449 SDYVLNDSITLRIGAVLGLGLAYAG----TKR-QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVG----TGYHEVASA 519 (913)
Q Consensus 449 ~~~L~~~~~~v~~gA~LGLGlay~G----s~~-e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lG----s~n~~v~~~ 519 (913)
..-....+ .-+...||.+|.- ..+ +...+.+...+.... . .+.+.||.+|.- .++.+..-.
T Consensus 139 ~~a~~~~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~--~----~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 139 RLAAEQGR----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGN--V----WSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--H----HHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHCCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--H----HHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 77666544 3467778888863 333 355555555544221 1 467788888874 566655555
Q ss_pred HHHHHHcCCcCcccccchhhHHHHHHHHHhc-C-----CcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhc----cCCH
Q psy6263 520 ILQTLIELPVSELQDGHYSRFLPLALAITYL-G-----KKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAG----SGDV 589 (913)
Q Consensus 520 lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~-G-----~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaG----TGn~ 589 (913)
.++...+. .+ . .+...+|.++. | ..+.+...++......++. +..-+|..|.. .+|.
T Consensus 209 ~~~~a~~~-----~~-~---~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~----a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 209 WYRKSATS-----GD-E---LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSI----AQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp HHHHHHHT-----TC-H---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHH----HHHHHHHHHHHTTTSSCCH
T ss_pred HHHHHHHC-----CC-H---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH----HHHHHHHHHHCCCCCCCCH
Confidence 55544442 12 1 23334566654 2 2234555555544444443 34456666654 5666
Q ss_pred HHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhc-
Q psy6263 590 LVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVAL- 668 (913)
Q Consensus 590 ~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~- 668 (913)
....+++.-+.+. . ...+...||..+...
T Consensus 276 ~~A~~~~~~a~~~-~-------------------------------------------------~~~a~~~Lg~~y~~~~ 305 (490)
T 2xm6_A 276 LKALEWYRKSAEQ-G-------------------------------------------------NSDGQYYLAHLYDKGA 305 (490)
T ss_dssp HHHHHHHHHHHTT-T-------------------------------------------------CHHHHHHHHHHHHHCB
T ss_pred HHHHHHHHHHHHc-C-------------------------------------------------CHHHHHHHHHHHHcCC
Confidence 4444444433321 0 011334566665543
Q ss_pred -CcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhc--CCC--chhHHHHHHhhccCccHHHHHHHHHHHHHhhC
Q psy6263 669 -GEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSM--SNP--ALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGA 740 (913)
Q Consensus 669 -ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~a--s~~--~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~a 740 (913)
|..-..+.+...+..-.+.+++. +...||.++. |.+ ...++..+.+-..-.+.. |.+.||.+..
T Consensus 306 ~g~~~~~~~A~~~~~~a~~~~~~~----a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~----a~~~Lg~~y~ 374 (490)
T 2xm6_A 306 EGVAKNREQAISWYTKSAEQGDAT----AQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKA----AQFNLGNALL 374 (490)
T ss_dssp TTBCCCHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHH----HHHHHHHHHH
Confidence 21112456778888877777654 3455666653 222 236777777655433332 5556666654
No 146
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=42.16 E-value=2.5e+02 Score=27.22 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=33.5
Q ss_pred HHHHHhcCCc--ccHHHHHHH-HhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhh
Q psy6263 544 ALAITYLGKK--DAIDTTLAA-LEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCS 600 (913)
Q Consensus 544 gLgLl~~G~~--e~~~~ll~~-L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~ 600 (913)
.+|.+++.++ +.+-..++. +...|+.....-+..-+|.+|...|+.....+.+..+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455555444 344444444 33444433333456778999999999866666666554
No 147
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=42.09 E-value=2e+02 Score=26.13 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhcCcccccccHHHHHHHHhc
Q psy6263 657 AVAALGVAVVALGEEIGSEMSTRIFGQLGR 686 (913)
Q Consensus 657 a~~~Lgiali~~ge~ig~em~~r~~~~Ll~ 686 (913)
+...+|.++...|+ .+.|...+.+.++
T Consensus 67 a~~~lg~~~~~~~~---~~~A~~~~~~al~ 93 (150)
T 4ga2_A 67 AHRFLGLLYELEEN---TDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc---hHHHHHHHHHHHH
Confidence 34456666666654 3445555555544
No 148
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=40.45 E-value=2.3e+02 Score=26.36 Aligned_cols=163 Identities=12% Similarity=0.007 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcC-CChhhhhHHHH
Q psy6263 499 FAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVL-PDPFRSMAKMM 577 (913)
Q Consensus 499 ~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~-~~pi~r~~~~~ 577 (913)
.+-+.+|.++.-.++.+-....++.+.+..+ . .......+|..+...|+-+.+...++..... ++. .....
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~ 80 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDP----K-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS---AEINN 80 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc----c-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHH
Confidence 3556777788888876665555555544211 1 2223334455555666666666666554432 221 12345
Q ss_pred HHHHHHhcc-CCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHH
Q psy6263 578 LKMCAYAGS-GDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQ 656 (913)
Q Consensus 578 ~lglAyaGT-Gn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~ 656 (913)
.+|..|... |+.....+.+.-+..... .+. ...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------------------~~~--~~~ 114 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPT--------------------------------------------YPT--PYI 114 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTT--------------------------------------------CSC--HHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcC--------------------------------------------Ccc--hHH
Confidence 678889999 987555444444432100 000 122
Q ss_pred HHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhh
Q psy6263 657 AVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKY 719 (913)
Q Consensus 657 a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~ 719 (913)
+...+|.++...|+ .+.+...+...++....+......+|......|.. ..+++.+.+.
T Consensus 115 ~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~ 173 (225)
T 2vq2_A 115 ANLNKGICSAKQGQ---FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL-GDADYYFKKY 173 (225)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH-HHHHHHHHHH
Confidence 45567888888775 56678888888776544444333444444444443 2444444443
No 149
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=39.90 E-value=2.9e+02 Score=27.29 Aligned_cols=232 Identities=11% Similarity=-0.014 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHhhhhhcccCCCccccccccccCchhhHHHHHHHHHHHHhcC----CCCCchhHHHHHHHhhcCCCHHH
Q psy6263 384 NKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCG----VRNECDPALALLSDYVLNDSITL 459 (913)
Q Consensus 384 ~~~~~k~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG----~~~e~d~~l~lL~~~L~~~~~~v 459 (913)
..+....--..+.-....++.++|+..+.+-+..++. -+.+.+|.++.. ..+- +.++..+..-+...
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~~~~g~~~~~~~-~~A~~~~~~a~~~~---- 72 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKEN----SGCFNLGVLYYQGQGVEKNL-KKAASFYAKACDLN---- 72 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT----
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHcCCCcCCCH-HHHHHHHHHHHHCC----
Q ss_pred HHHHHHHHHHHhcc----CCC-HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHcCCcC
Q psy6263 460 RIGAVLGLGLAYAG----TKR-QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVG----TGYHEVASAILQTLIELPVS 530 (913)
Q Consensus 460 ~~gA~LGLGlay~G----s~~-e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lG----s~n~~v~~~lL~~l~~~~~~ 530 (913)
..-+...||.+|.. ..+ ++..+.+...+.... ..+.+.||.++.- .++.+-....++.+.+..
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-- 144 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-- 144 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCC------ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--
Q ss_pred cccccchhhHHHHHHHHHh----cCCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhc----cCCHHHHHHHHhhhhcc
Q psy6263 531 ELQDGHYSRFLPLALAITY----LGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAG----SGDVLVVQEFLHVCSEH 602 (913)
Q Consensus 531 ~~~~e~i~r~~~lgLgLl~----~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaG----TGn~~~Iq~LLh~~~~~ 602 (913)
...-...+|..+.. .|..+.+...++......++ -+...+|..|.. .|+.....+.+.-+.+.
T Consensus 145 -----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 145 -----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDS----PGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp -----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred -----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Q ss_pred CCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhh----cCcccccccHH
Q psy6263 603 YTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVA----LGEEIGSEMST 678 (913)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~----~ge~ig~em~~ 678 (913)
- ...+...+|.++.. .++ .+.|.
T Consensus 216 ~--------------------------------------------------~~~a~~~l~~~~~~g~~~~~~---~~~A~ 242 (273)
T 1ouv_A 216 E--------------------------------------------------NGGGCFNLGAMQYNGEGVTRN---EKQAI 242 (273)
T ss_dssp T--------------------------------------------------CHHHHHHHHHHHHTTSSSSCC---STTHH
T ss_pred C--------------------------------------------------CHHHHHHHHHHHHcCCCcccC---HHHHH
Q ss_pred HHHHHHhccCChhHHh
Q psy6263 679 RIFGQLGRYGEPTVRR 694 (913)
Q Consensus 679 r~~~~Ll~~~~~~vR~ 694 (913)
..+..-++.+.+....
T Consensus 243 ~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 243 ENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHcCCHHHHH
No 150
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=39.54 E-value=44 Score=39.27 Aligned_cols=92 Identities=16% Similarity=0.104 Sum_probs=58.0
Q ss_pred ccccCchhhHHHHHHHHHHHHhcCCCC--------CchhHHHHHHHhh--------cCCC-HHHHHHHHHHHHHHhccCC
Q psy6263 413 KYLYTSEDYIKAGALLALGIVNCGVRN--------ECDPALALLSDYV--------LNDS-ITLRIGAVLGLGLAYAGTK 475 (913)
Q Consensus 413 ~yL~s~~~~~k~GAllaLGLi~aG~~~--------e~d~~l~lL~~~L--------~~~~-~~v~~gA~LGLGlay~Gs~ 475 (913)
.-|.++.=.+|.||.+||-=+-..++. ..|-+..+|.-.. .++- .+||-.++-.||.+ ...
T Consensus 181 ~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL--~hL 258 (800)
T 3oc3_A 181 DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI--YPL 258 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH--TTT
T ss_pred HHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH--HhC
Confidence 334567778999999999987664431 1144555555432 2221 46888888888887 444
Q ss_pred CHHHHHHHHHhhcC-CCCcHHHHHHHHHHHHHHHh
Q psy6263 476 RQEVVTLLLPVLTD-RKSTPEVVAFAAVAASLIYV 509 (913)
Q Consensus 476 ~e~v~e~L~~~L~d-~~~~~ev~~~A~laLGLi~l 509 (913)
.++ ...|...+.. .....|++-++.+||. |+
T Consensus 259 p~e-~~IL~qLV~~l~~~~WEVRHGGLLGLK--YL 290 (800)
T 3oc3_A 259 IGP-NDIIEQLVGFLDSGDWQVQFSGLIALG--YL 290 (800)
T ss_dssp SCS-CCHHHHHTTGGGCSCHHHHHHHHHHHH--HT
T ss_pred Chh-HHHHHHHHhhcCCCCeeehhhhHHHHH--HH
Confidence 445 6667766642 2234777767777777 55
No 151
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=39.20 E-value=2.3e+02 Score=25.97 Aligned_cols=25 Identities=8% Similarity=-0.005 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHc
Q psy6263 502 VAASLIYVGTGYHEVASAILQTLIE 526 (913)
Q Consensus 502 laLGLi~lGs~n~~v~~~lL~~l~~ 526 (913)
+-||.++.-.|+-+-+...++.+.+
T Consensus 9 ~~lG~~~~~~g~~~~A~~~~~~al~ 33 (184)
T 3vtx_A 9 MDIGDKKRTKGDFDGAIRAYKKVLK 33 (184)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777777765555444444443
No 152
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=36.78 E-value=2.1e+02 Score=29.11 Aligned_cols=122 Identities=7% Similarity=-0.129 Sum_probs=64.1
Q ss_pred hcccCCCcccccccccc----CchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhc----CCCHHHHHHHHHHHHHHh
Q psy6263 400 YLWDVDGGLTPIDKYLY----TSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVL----NDSITLRIGAVLGLGLAY 471 (913)
Q Consensus 400 ~~~~~~~~l~~l~~yL~----s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~----~~~~~v~~gA~LGLGlay 471 (913)
..|+.++++..+.+-+. ...........+.+|.++.... +.+.++..+...+. ..+.....-+...+|.+|
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 34455555544433322 1122344455566777765433 33567777766653 223344556778888888
Q ss_pred ccCCCH-HHHHHHHHhh---cCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy6263 472 AGTKRQ-EVVTLLLPVL---TDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQ 522 (913)
Q Consensus 472 ~Gs~~e-~v~e~L~~~L---~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~ 522 (913)
...++- ++.+.+...+ ............+-+-+|.+|.-.++-+-+-..++
T Consensus 166 ~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ 220 (293)
T 2qfc_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 877763 4444444433 21111122222466778888887776654443333
No 153
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=36.75 E-value=56 Score=33.70 Aligned_cols=70 Identities=13% Similarity=-0.056 Sum_probs=49.8
Q ss_pred cccHHHHHHHHhccCCh--hHHhHhHHHHHHhhcCCCch-------hHHHHHHhhccCccHHHHHHHHHHHHHhhCCCC
Q psy6263 674 SEMSTRIFGQLGRYGEP--TVRRAVPLAIALCSMSNPAL-------NVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTN 743 (913)
Q Consensus 674 ~em~~r~~~~Ll~~~~~--~vR~~a~LALgL~~as~~~~-------~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtn 743 (913)
.+|....+=++++++++ .++..++-++..++.+++.. ..+..|-++....+..|+..|.-||.-+..++.
T Consensus 6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 45545555556777777 77777777888877665421 456677777666788899999999999987654
No 154
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=35.89 E-value=3.7e+02 Score=27.46 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=68.2
Q ss_pred HHHHHhhhhh--cccCCCcccccccccc----CchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhc----CCCHHHH
Q psy6263 391 SAAASLGLIY--LWDVDGGLTPIDKYLY----TSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVL----NDSITLR 460 (913)
Q Consensus 391 sA~aslGlI~--~~~~~~~l~~l~~yL~----s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~----~~~~~v~ 460 (913)
.+...+|.++ .|+.++|+..+.+-+. .++....+-++..+|.++.. .+.+.++..+..-+. ..+....
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 3344455554 3577777666555332 22334455677778888754 444566666655443 1223344
Q ss_pred HHHHHHHHHHhccCCCH-HHHHHHHHhhc---CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy6263 461 IGAVLGLGLAYAGTKRQ-EVVTLLLPVLT---DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQ 522 (913)
Q Consensus 461 ~gA~LGLGlay~Gs~~e-~v~e~L~~~L~---d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~ 522 (913)
.-+...+|.+|...++- ++.+.+...+. +.... .....+.+++|++++..++.+.....++
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY-PTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45666777777776663 44444444432 11111 1112366777777776665544443333
No 155
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=35.73 E-value=4.9e+02 Score=28.76 Aligned_cols=80 Identities=10% Similarity=-0.089 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhhhHHHH
Q psy6263 499 FAAVAASLIYVGTGYH-EVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMM 577 (913)
Q Consensus 499 ~A~laLGLi~lGs~n~-~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r~~~~~ 577 (913)
.+-+.+|.++...++. +.+...++.+.+.. .+...-...+|..+...|+-+.+...++...... |- .....
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~--~~~~~ 174 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLE-----PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-KN--KVSLQ 174 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-CC--HHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC--HHHHH
Confidence 4667888888888876 55555555544411 1122334445556666677667766666655443 22 24566
Q ss_pred HHHHHHhcc
Q psy6263 578 LKMCAYAGS 586 (913)
Q Consensus 578 ~lglAyaGT 586 (913)
.+|.+|...
T Consensus 175 ~lg~~~~~~ 183 (474)
T 4abn_A 175 NLSMVLRQL 183 (474)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 788888887
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=35.69 E-value=2.3e+02 Score=25.17 Aligned_cols=92 Identities=11% Similarity=0.035 Sum_probs=44.6
Q ss_pred HHHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhh
Q psy6263 462 GAVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSR 539 (913)
Q Consensus 462 gA~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r 539 (913)
.+.+.+|.++...++ ++..+.+...+. ++. .. .+-+.+|.++...++.+-....++.+....+ + ...-
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~--~~~~ 88 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DA----RYFLGLGACRQSLGLYEQALQSYSYGALMDI---N--EPRF 88 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T--CTHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---C--CcHH
Confidence 445566666666655 344455554443 222 11 2345666666666665554444444443111 1 1222
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHH
Q psy6263 540 FLPLALAITYLGKKDAIDTTLAAL 563 (913)
Q Consensus 540 ~~~lgLgLl~~G~~e~~~~ll~~L 563 (913)
...+|..+...|+-+.+...++..
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334455555566655555544443
No 157
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=35.44 E-value=3e+02 Score=26.21 Aligned_cols=98 Identities=13% Similarity=0.006 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHhhc---CCCCcHHHHHH
Q psy6263 424 AGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLT---DRKSTPEVVAF 499 (913)
Q Consensus 424 ~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~---d~~~~~ev~~~ 499 (913)
+-++..+|.++...+ +.+.++..+...+... .. ..+...+|.+|...++- ++.+.+...+. +..........
T Consensus 5 a~~~~~~g~~~~~~~-~~~~A~~~~~~a~~~~-~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKAR-QFDEAIEHYNKAWELH-KD--ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS-CC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhh-cc--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 445556666654332 2345666665554433 11 23555566666555552 33444433332 11111112235
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy6263 500 AAVAASLIYVGTGYHEVASAILQTLI 525 (913)
Q Consensus 500 A~laLGLi~lGs~n~~v~~~lL~~l~ 525 (913)
+-+.+|.++...++.+-....++.+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 106 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSL 106 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 56666766666666555444444443
No 158
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=35.43 E-value=4.5e+02 Score=28.23 Aligned_cols=84 Identities=11% Similarity=-0.031 Sum_probs=44.9
Q ss_pred hhcccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-H
Q psy6263 399 IYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-Q 477 (913)
Q Consensus 399 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e 477 (913)
...|+.++|+..+.+-+.... ..-+.+.+|.++...+ +.+.++..+...+....... .+.+.+|.+|...++ +
T Consensus 17 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVG-DLKKVVEMSTKALELKPDYS--KVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHH
T ss_pred HHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHh-hHHHHHHHHHHHhccChHHH--HHHHHHHHHHHHHhhHH
Confidence 445677777777666654322 1445666666654322 23556666666554322222 345556666666655 3
Q ss_pred HHHHHHHHhhc
Q psy6263 478 EVVTLLLPVLT 488 (913)
Q Consensus 478 ~v~e~L~~~L~ 488 (913)
++...+...+.
T Consensus 91 ~A~~~~~~~~~ 101 (514)
T 2gw1_A 91 DAMFDLSVLSL 101 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 45555555443
No 159
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=34.52 E-value=2.8e+02 Score=25.54 Aligned_cols=137 Identities=14% Similarity=0.040 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhccCCCH-HHHHHHHHhhc---CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccc
Q psy6263 459 LRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLT---DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQD 534 (913)
Q Consensus 459 v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~---d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~ 534 (913)
...-+...+|.+|...++- +..+.+...+. ..... .....+-..+|.++.-.++.+.....++...+... ...+
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~ 101 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH-TAEHRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPE 101 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCc
Confidence 3455667788888777773 44454444442 22112 22335677889999999887665544444333100 0111
Q ss_pred cchhh---HHHHHHHHHhcCCcccHHHHHHH----HhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHh
Q psy6263 535 GHYSR---FLPLALAITYLGKKDAIDTTLAA----LEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLH 597 (913)
Q Consensus 535 e~i~r---~~~lgLgLl~~G~~e~~~~ll~~----L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh 597 (913)
.+... ...+|......|+-+.+...++. .....++.........+|.+|...|+.....+.+.
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 12122 22334444455665555544443 33456666555556788999999999755444443
No 160
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=32.91 E-value=1.4e+02 Score=30.04 Aligned_cols=76 Identities=9% Similarity=-0.082 Sum_probs=53.2
Q ss_pred cccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc-hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHH
Q psy6263 674 SEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA-LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATML 751 (913)
Q Consensus 674 ~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~-~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~L 751 (913)
++-....+...+++.++++||++..++ |.+....+ ..++..+..+.+|.+.+|+.++--+|--++.- +-..+..++
T Consensus 122 ~~~~~~~i~~W~~s~~~w~rR~ai~~~-l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~~~~v~~fl 198 (220)
T 2b6c_A 122 LTELPTIFALFYGAENFWNRRVALNLQ-LMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQWVEELM 198 (220)
T ss_dssp GGGHHHHHHHHTTCSSHHHHHHHHHTT-TTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence 444566788899999999999887644 33333333 35677777788999999999988888777753 223344454
No 161
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=32.76 E-value=3e+02 Score=25.47 Aligned_cols=115 Identities=9% Similarity=-0.004 Sum_probs=67.0
Q ss_pred CHHHHHHHHHhhcCCC-------CcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHH
Q psy6263 476 RQEVVTLLLPVLTDRK-------STPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAIT 548 (913)
Q Consensus 476 ~e~v~e~L~~~L~d~~-------~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl 548 (913)
.+++.+.|...+.... .+++ ..-+-+.+|.++...++.+-....++.+....+ . ...-...+|..+.
T Consensus 8 ~~~~~~~l~~~~~~~~~l~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P---~--~~~~~~~lg~~~~ 81 (151)
T 3gyz_A 8 NESISTAVIDAINSGATLKDINAIPDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF---Y--NVDYIMGLAAIYQ 81 (151)
T ss_dssp -CHHHHHHHHHHHTSCCTGGGCCSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHhCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C--CHHHHHHHHHHHH
Confidence 3466777777665321 1222 225778999999999988777777776665211 1 2233444566666
Q ss_pred hcCCcccHHHHHHHH-hcCCChhhhhHHHHHHHHHHhccCCH-HHHHHHHhhh
Q psy6263 549 YLGKKDAIDTTLAAL-EVLPDPFRSMAKMMLKMCAYAGSGDV-LVVQEFLHVC 599 (913)
Q Consensus 549 ~~G~~e~~~~ll~~L-~~~~~pi~r~~~~~~lglAyaGTGn~-~~Iq~LLh~~ 599 (913)
..|+-+.+-..++.. .-.|+. ..+.+-+|.+|...|+. ++++.+-+..
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~~---~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKND---YTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSSC---CHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 667766555554443 333332 23456788999999997 4544444333
No 162
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=32.36 E-value=12 Score=39.11 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=25.1
Q ss_pred HHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHH
Q psy6263 681 FGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGL 737 (913)
Q Consensus 681 ~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGl 737 (913)
+..|+++.++.||.+++.++| ...|..+ .|++..||..|.-+||+
T Consensus 199 L~~Ll~D~d~~VR~~aa~~l~-----------~~~L~~L-~D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 199 LLELLHDPDWTVRLAAVEHAS-----------LEALREL-DEPDPEVRLAIAGRLGI 243 (244)
T ss_dssp GGGGGGCSSHHHHHHHHHHSC-----------HHHHHHC-CCCCHHHHHHHHCCC--
T ss_pred HHHHHcCCCHHHHHHHHHcCC-----------HHHHHHc-cCCCHHHHHHHHHHhCC
Confidence 445566666666666666544 1344444 56666666666655554
No 163
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=32.18 E-value=11 Score=39.39 Aligned_cols=69 Identities=28% Similarity=0.286 Sum_probs=47.7
Q ss_pred HHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcC
Q psy6263 681 FGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVK 760 (913)
Q Consensus 681 ~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~~~~~~ 760 (913)
+..++++.++.||++++-.+ + .+.|..+..|.+..||..++-++|. ..|..| ...
T Consensus 175 l~~ll~D~d~~VR~aaa~~l-------~----~~~L~~Ll~D~d~~VR~~aa~~l~~-----------~~L~~L---~D~ 229 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRL-------R----GDDLLELLHDPDWTVRLAAVEHASL-----------EALREL---DEP 229 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHC-------C----GGGGGGGGGCSSHHHHHHHHHHSCH-----------HHHHHC---CCC
T ss_pred HHHHHcCCCHHHHHHHHHhC-------C----HHHHHHHHcCCCHHHHHHHHHcCCH-----------HHHHHc---cCC
Confidence 55788999999999887653 1 1467777889999999999999761 233333 234
Q ss_pred ChhHHHHHHHHHHH
Q psy6263 761 NTGHLFMVRIAQGL 774 (913)
Q Consensus 761 d~~~~f~~~iAqGL 774 (913)
|+.++..+.-++|+
T Consensus 230 ~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 230 DPEVRLAIAGRLGI 243 (244)
T ss_dssp CHHHHHHHHCCC--
T ss_pred CHHHHHHHHHHhCC
Confidence 56677777666654
No 164
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=31.62 E-value=5.5e+02 Score=30.62 Aligned_cols=25 Identities=16% Similarity=0.030 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6263 500 AAVAASLIYVGTGYHEVASAILQTL 524 (913)
Q Consensus 500 A~laLGLi~lGs~n~~v~~~lL~~l 524 (913)
|-..||.++...|+-+-+...++.+
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kA 35 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKA 35 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344555555555544443333333
No 165
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=31.31 E-value=2.6e+02 Score=31.50 Aligned_cols=146 Identities=17% Similarity=0.036 Sum_probs=70.2
Q ss_pred ccCCCccccccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-HHHH
Q psy6263 402 WDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-QEVV 480 (913)
Q Consensus 402 ~~~~~~l~~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e~v~ 480 (913)
|+.++|++.+.+-+..... ...+.+.+|.++.... +.+.+...+...+...... ..+...+|.+|...++ +++.
T Consensus 3 g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMG-DTTAGEMAVQRGLALHPGH--PEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ------------------C--CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTSTTC--HHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHH
Confidence 5666677666665543222 2345666777665332 3456777777776643222 2355677777777776 4566
Q ss_pred HHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhc---CCcccH
Q psy6263 481 TLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYL---GKKDAI 556 (913)
Q Consensus 481 e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~---G~~e~~ 556 (913)
+.+...+. ++. .. .+-+.+|.++...++.+.+...++.+.+... + ...-...+|..+... |.-+++
T Consensus 78 ~~~~~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~--~~~~~~~l~~~~~~~~~~g~~~~A 147 (568)
T 2vsy_A 78 VLLQQASDAAPE-HP----GIALWLGHALEDAGQAEAAAAAYTRAHQLLP---E--EPYITAQLLNWRRRLCDWRALDVL 147 (568)
T ss_dssp HHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T--CHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHHHHHHhcCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C--CHHHHHHHHHHHHHhhccccHHHH
Confidence 66666554 322 12 3556778888888877666666555554211 1 122233344455555 555555
Q ss_pred HHHHHH
Q psy6263 557 DTTLAA 562 (913)
Q Consensus 557 ~~ll~~ 562 (913)
...++.
T Consensus 148 ~~~~~~ 153 (568)
T 2vsy_A 148 SAQVRA 153 (568)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 166
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=29.47 E-value=2.9e+02 Score=24.28 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=25.7
Q ss_pred HHHHHHHHHhccCCCH-HHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy6263 462 GAVLGLGLAYAGTKRQ-EVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLI 525 (913)
Q Consensus 462 gA~LGLGlay~Gs~~e-~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~ 525 (913)
-+...+|.++...++- +..+.+...+. ++. .. .+-+.+|.++.-.++.+.....++.+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~ 74 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NA----IYYGNRSLAYLRTECYGYALGDATRAI 74 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555542 33344433332 211 11 233455555555555444444443333
No 167
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=29.23 E-value=62 Score=38.56 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=47.9
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc------hhHHHH-HHhhccCccHHHHHHHHHHHHHhhC
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA------LNVIDV-LNKYSHDLDEEVAHNAIFSMGLVGA 740 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~------~~vid~-L~~~s~D~d~~Vr~~AiiALGlV~a 740 (913)
++.++++ +++.++..|.+||.||+-++.++.. .+++.. |.++..|++.+||..|.-||+=+..
T Consensus 36 i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 36 ILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp THHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3456665 5789999999999999999854322 145554 5677889999999999988886654
No 168
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=29.22 E-value=3.2e+02 Score=24.67 Aligned_cols=77 Identities=10% Similarity=0.049 Sum_probs=36.9
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-HHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy6263 442 DPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKR-QEVVTLLLPVLT-DRKSTPEVVAFAAVAASLIYVGTGYHEVASA 519 (913)
Q Consensus 442 d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~-d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~ 519 (913)
|.+++.+..-+.. ..-...+.+.||.+|...++ +.+.+.+...+. ++.. . .+-+.+|.++...++.+-+..
T Consensus 14 e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~----~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 14 ERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-P----KAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H----HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHcCchHHHHH
Confidence 4444444443332 23333445566666666665 344555555543 2221 1 244556666666666554444
Q ss_pred HHHHHH
Q psy6263 520 ILQTLI 525 (913)
Q Consensus 520 lL~~l~ 525 (913)
.++.+.
T Consensus 87 ~~~~al 92 (150)
T 4ga2_A 87 CYRRSV 92 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 169
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=28.23 E-value=3.1e+02 Score=25.26 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=12.4
Q ss_pred HHHHHHHHhhcCcccccccHHHHHHHHhc
Q psy6263 658 VAALGVAVVALGEEIGSEMSTRIFGQLGR 686 (913)
Q Consensus 658 ~~~Lgiali~~ge~ig~em~~r~~~~Ll~ 686 (913)
...+|.++...|+ .+.+.+.+...++
T Consensus 111 ~~~la~~~~~~g~---~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 111 ACELAVQYNQVGR---DEEALELLWNILK 136 (176)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccc---HHHHHHHHHHHHH
Confidence 3345555555553 3344444444443
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=27.31 E-value=2.1e+02 Score=25.06 Aligned_cols=88 Identities=9% Similarity=0.029 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhc-CCChhhhhHHHHHH
Q psy6263 501 AVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEV-LPDPFRSMAKMMLK 579 (913)
Q Consensus 501 ~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~-~~~pi~r~~~~~~l 579 (913)
.+.+|.+++-.++.+.....++.+....+ + ...-...+|..+...|+.+.+...++.... .++. ..+.+.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P---~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~l 91 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP---E--REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---IAVHAAL 91 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST---T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC---C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Confidence 35667777777776665555555554211 1 233344556666667776666665555443 3322 1245678
Q ss_pred HHHHhccCCHH-HHHHHH
Q psy6263 580 MCAYAGSGDVL-VVQEFL 596 (913)
Q Consensus 580 glAyaGTGn~~-~Iq~LL 596 (913)
|.+|...|+.. +++.+-
T Consensus 92 a~~~~~~g~~~~A~~~~~ 109 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLR 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 88999999864 444433
No 171
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=25.88 E-value=4.3e+02 Score=26.63 Aligned_cols=165 Identities=8% Similarity=-0.123 Sum_probs=0.0
Q ss_pred hhhcccCCCccccccccccCchhhHH----HHHHHHHHHHhcCCCCCchhHHHHHHHhhc----CCCHHHHHHHHHHHHH
Q psy6263 398 LIYLWDVDGGLTPIDKYLYTSEDYIK----AGALLALGIVNCGVRNECDPALALLSDYVL----NDSITLRIGAVLGLGL 469 (913)
Q Consensus 398 lI~~~~~~~~l~~l~~yL~s~~~~~k----~GAllaLGLi~aG~~~e~d~~l~lL~~~L~----~~~~~v~~gA~LGLGl 469 (913)
.+..++.+++...+.+.+........ .-...++|.++.+..+- +.++..+...+. ..+......+...||.
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDY-EYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCH-HHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Q ss_pred HhccCCC----HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHH
Q psy6263 470 AYAGTKR----QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLAL 545 (913)
Q Consensus 470 ay~Gs~~----e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgL 545 (913)
+|.-.++ .+.++..+...............+-+.+|.+|.-.++-+-+-..++.+.+-....-.. .....+-..+
T Consensus 164 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l 242 (293)
T 3u3w_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM-ALIGQLYYQR 242 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC-TTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHH
Q ss_pred HHHhcCCcccHHHHHHHHh
Q psy6263 546 AITYLGKKDAIDTTLAALE 564 (913)
Q Consensus 546 gLl~~G~~e~~~~ll~~L~ 564 (913)
|.++...++.-+.-++.+.
T Consensus 243 g~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 243 GECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHH
No 172
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=25.24 E-value=2.9e+02 Score=22.80 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=13.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHh
Q psy6263 576 MMLKMCAYAGSGDVLVVQEFLH 597 (913)
Q Consensus 576 ~~~lglAyaGTGn~~~Iq~LLh 597 (913)
...+|.+|...|+.....+.+.
T Consensus 106 ~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 106 WYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHH
Confidence 3456677788887654444443
No 173
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=25.09 E-value=2.2e+02 Score=28.08 Aligned_cols=89 Identities=15% Similarity=0.022 Sum_probs=51.3
Q ss_pred HHHHHHHHhhCchhhHHHHHhccCh----HHHHHHHHhhcccCCChhhHHHHHHHHHHHhccCCHHHHHHHHHhcCCchh
Q psy6263 180 IQACDLLMEIDHLELLDKHMDVTNY----PRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPS 255 (913)
Q Consensus 180 ~eAidlalE~~~ld~i~~~v~~~~~----~ri~~Yl~~~~~~~~~~~~~~vl~~~~~iy~~~~~~~~al~~al~L~d~~~ 255 (913)
..=-++|||.++++.=.++.++.+. .++-.--+... =++++-..|.+.++|...+-.+.-.+|.+.
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~g----------n~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQG----------NASLAEMIYQTQHSFDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHTTCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcC----------ChHHHHHHHHHhCCHHHHHHHHHHhCCHHH
Confidence 4456899999999876666543222 12221111111 123444566666676666666666677666
Q ss_pred HHHHHhcc---CChhHHHHHHHHHhh
Q psy6263 256 VLKIFQLC---EDPVVRKQLAYMAGR 278 (913)
Q Consensus 256 v~~i~~~~---~d~~~~~Qiaf~lar 278 (913)
++.+-+-+ ++..++.|.+|.+++
T Consensus 79 L~kla~iA~~~g~~n~af~~~l~lGd 104 (177)
T 3mkq_B 79 LSKMQNIAQTREDFGSMLLNTFYNNS 104 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCccHHHHHHHHHHcCC
Confidence 66655442 455677777777765
No 174
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=24.89 E-value=3.9e+02 Score=25.44 Aligned_cols=150 Identities=11% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCH-HHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhh
Q psy6263 575 KMMLKMCAYAGSGDV-LVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLS 653 (913)
Q Consensus 575 ~~~~lglAyaGTGn~-~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~ 653 (913)
..+..|..+...|+. .+++.+-..+..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------------------------------------------- 36 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNID------------------------------------------------- 36 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-------------------------------------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------------------------------------------
Q ss_pred hHHHHHH----------------HHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHH
Q psy6263 654 SMQAVAA----------------LGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLN 717 (913)
Q Consensus 654 ~~~a~~~----------------Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~ 717 (913)
...+... +|.++...|+ .+.|...+.+.++....+.....-+|..+...|.....+-..-.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 113 (208)
T 3urz_A 37 RTEMYYWTNVDKNSEISSKLATELALAYKKNRN---YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113 (208)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q ss_pred hhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q psy6263 718 KYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGK 779 (913)
Q Consensus 718 ~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr~L~~~~~~d~~~~f~~~iAqGLl~~Gk 779 (913)
-+..|++. ..+.+.+|.+....++.+.........+....+|...-....+.+...+|.
T Consensus 114 al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~ 172 (208)
T 3urz_A 114 ILQLEADN---LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTR 172 (208)
T ss_dssp HHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCC---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccC
No 175
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=24.41 E-value=5.1e+02 Score=26.08 Aligned_cols=77 Identities=8% Similarity=-0.045 Sum_probs=51.7
Q ss_pred cccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc-hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChhHHHHHHH
Q psy6263 674 SEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA-LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLR 752 (913)
Q Consensus 674 ~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~-~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~ri~~~Lr 752 (913)
++.+...+...+++.++.+||++..++ +.+....+ ...+..+..+.+|.+.+|+.++--+|.-++.- +-..+..++.
T Consensus 129 p~~~~~~l~~W~~s~~~w~rR~ai~~~-l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~p~~v~~fl~ 206 (232)
T 3jxy_A 129 PELISAYIPKWIASDNIWLQRAAILFQ-LKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-NPDVVWEYVQ 206 (232)
T ss_dssp GGGGGGTHHHHHHSSCHHHHHHHHHTT-TTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHH
Confidence 343445677899999999999886654 33332222 35666677788899999999987777777753 3234555544
No 176
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=23.31 E-value=5.8e+02 Score=25.68 Aligned_cols=179 Identities=9% Similarity=-0.027 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHhhhhh--cccCCCcccccccccc----CchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhc----
Q psy6263 384 NKQHGMLSAAASLGLIY--LWDVDGGLTPIDKYLY----TSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVL---- 453 (913)
Q Consensus 384 ~~~~~k~sA~aslGlI~--~~~~~~~l~~l~~yL~----s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~---- 453 (913)
...+....+...+|.++ .|+.++|+..+.+-+. .++....+.++..+|.++.....+.+.++..+..-+.
T Consensus 71 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 71 GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q ss_pred CCCHHHHHHHHHHHHHHhccCCC-HHHHHHHHHhhcCCCCcHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCc
Q psy6263 454 NDSITLRIGAVLGLGLAYAGTKR-QEVVTLLLPVLTDRKSTPE---VVAFAAVAASLIYVGTGYHEVASAILQTLIELPV 529 (913)
Q Consensus 454 ~~~~~v~~gA~LGLGlay~Gs~~-e~v~e~L~~~L~d~~~~~e---v~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~ 529 (913)
..+.....-+...+|.+|...++ +++.+.+...+.-...... ....+-+.+|+++...++.+-....++...+-.+
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q ss_pred CcccccchhhHHHHHHHHHhcCCcccHHHHHHHH
Q psy6263 530 SELQDGHYSRFLPLALAITYLGKKDAIDTTLAAL 563 (913)
Q Consensus 530 ~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L 563 (913)
..... .-.+++.--....-.|..+..+..++..
T Consensus 231 ~~~~~-~~~~~l~~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 231 NFADS-RESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp --------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred CCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHh
No 177
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=23.07 E-value=3.9e+02 Score=23.53 Aligned_cols=88 Identities=16% Similarity=-0.007 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhc-CCChhhhhHHHH
Q psy6263 499 FAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEV-LPDPFRSMAKMM 577 (913)
Q Consensus 499 ~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~-~~~pi~r~~~~~ 577 (913)
.+.+.+|.++...++.+-....++.+....+ . ...-...+|..+...|+-+.+...++.... .++. ....+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 90 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH---Y--DARYFLGLGACRQSLGLYEQALQSYSYGALMDINE---PRFPF 90 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC---c--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHH
Confidence 4667888899988887776666666654211 1 222334455555556666666555555443 2222 12346
Q ss_pred HHHHHHhccCCHHHHHH
Q psy6263 578 LKMCAYAGSGDVLVVQE 594 (913)
Q Consensus 578 ~lglAyaGTGn~~~Iq~ 594 (913)
-+|.+|...|+.....+
T Consensus 91 ~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAES 107 (142)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 68899999999743333
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=23.02 E-value=3.4e+02 Score=22.84 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHh--cCCcccHHHHHHHHh-cCCChhhhhHHHH
Q psy6263 501 AVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITY--LGKKDAIDTTLAALE-VLPDPFRSMAKMM 577 (913)
Q Consensus 501 ~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~--~G~~e~~~~ll~~L~-~~~~pi~r~~~~~ 577 (913)
.+.+|..+.-.++-+-....++.+....+ ++ ....-+-..+|.++ .|+-+.+...++... ..++......+.+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP---NG-VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS---SS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC---CC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 45677788888887666566655554211 12 32222333444444 555455555555443 3444322344567
Q ss_pred HHHHHHhccCCHHHHHHHHhhh
Q psy6263 578 LKMCAYAGSGDVLVVQEFLHVC 599 (913)
Q Consensus 578 ~lglAyaGTGn~~~Iq~LLh~~ 599 (913)
.+|.+|...|+.......+.-+
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 7899999999975544444433
No 179
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.33 E-value=85 Score=34.10 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHhhCchhhHHHHHhccChHH---HHHHHHhhcccCCChhhHHHHHHHHHHHhccCC
Q psy6263 163 LELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPR---VCLYLSNCALYVEEPERSVITNGVLNNYLKFKE 239 (913)
Q Consensus 163 ~~lv~~iv~~~l~~n~e~eAidlalE~~~ld~i~~~v~~~~~~r---i~~Yl~~~~~~~~~~~~~~vl~~~~~iy~~~~~ 239 (913)
.+-+.+++..|- .-.+++.||..|-+ +.+.+-.| +..|...|. +..+-+.-.|+.+..+..|.+.
T Consensus 155 ~~e~~eli~icr-----EYilal~iEl~Rr~-----l~~~~~kR~lELAAYFT~c~--LQp~H~~LaLr~AM~~a~K~KN 222 (325)
T 3mv2_A 155 EKLAHKILETAR-----EYILGLSIELERRS-----LKEGNTVRMLELAAYFTKAK--LSPIHRTNALQVAMSQHFKHKN 222 (325)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHT-----CCTTCHHHHHHHHHHGGGSC--CCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHh-----cCcccHHHHHHHHHHhccCC--CcHHHHHHHHHHHHHHHHHhhh
Confidence 334445555554 33566677776643 22223344 334777764 3345577899999999999999
Q ss_pred HHHHHHHH
Q psy6263 240 YPRALTLA 247 (913)
Q Consensus 240 ~~~al~~a 247 (913)
|..|...|
T Consensus 223 y~tAa~fA 230 (325)
T 3mv2_A 223 FLQASYFA 230 (325)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98775444
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=21.39 E-value=3.5e+02 Score=23.47 Aligned_cols=15 Identities=7% Similarity=-0.035 Sum_probs=6.8
Q ss_pred HHHHHHHhcCCCHHH
Q psy6263 502 VAASLIYVGTGYHEV 516 (913)
Q Consensus 502 laLGLi~lGs~n~~v 516 (913)
+.+|.++...++.+-
T Consensus 55 ~~lg~~~~~~g~~~~ 69 (121)
T 1hxi_A 55 RSLGLTQAENEKDGL 69 (121)
T ss_dssp HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcCCHHH
Confidence 344444444444433
No 181
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=21.02 E-value=2e+02 Score=32.03 Aligned_cols=106 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhhCch---hhHHHHHhccCh-HHHHH-HHHhhcccCCChhhHHHHHHHHHHHhc----
Q psy6263 166 IEDIIQFDMKHNAEIQACDLLMEIDHL---ELLDKHMDVTNY-PRVCL-YLSNCALYVEEPERSVITNGVLNNYLK---- 236 (913)
Q Consensus 166 v~~iv~~~l~~n~e~eAidlalE~~~l---d~i~~~v~~~~~-~ri~~-Yl~~~~~~~~~~~~~~vl~~~~~iy~~---- 236 (913)
++..+...+--|++..||+++|+.+|+ =+|...-...-+ .++.. |+.....--+ ++++++.+..+
T Consensus 146 ~d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg~el~~~~vq~~Y~~k~~~~~~------~~rll~~iv~~n~~d 219 (399)
T 2pm7_A 146 IEQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERLKESVKNAYFAKYGSKSS------LSRILYSISKREVDD 219 (399)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHHHHHHHHHHhcccCch------HHHHHHHHHccCHHH
Q ss_pred ------cCCHHHHHHHHHhcCCch--hHHHHHhccCChhHH------HHHHHHHh
Q psy6263 237 ------FKEYPRALTLALQLNDEP--SVLKIFQLCEDPVVR------KQLAYMAG 277 (913)
Q Consensus 237 ------~~~~~~al~~al~L~d~~--~v~~i~~~~~d~~~~------~Qiaf~la 277 (913)
+++|-+++...+--.+++ ...++...+.|.+.. -.+||++|
T Consensus 220 ~V~~~~l~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~A 274 (399)
T 2pm7_A 220 LVENLDVSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAA 274 (399)
T ss_dssp HHHHBCGGGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHhcCChhhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhh
No 182
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=20.76 E-value=1.5e+02 Score=35.96 Aligned_cols=65 Identities=11% Similarity=-0.029 Sum_probs=51.3
Q ss_pred HHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc--hhH-----------HHHHHhhccCccHHHHHHHHHHHHHhhCC
Q psy6263 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA--LNV-----------IDVLNKYSHDLDEEVAHNAIFSMGLVGAG 741 (913)
Q Consensus 677 ~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~--~~v-----------id~L~~~s~D~d~~Vr~~AiiALGlV~aG 741 (913)
+...+..|+...++.||++++-+++-+.++... .++ ++.|-++.+..|..+|++|.-|++++-.+
T Consensus 607 a~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 607 YWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 456677788888999999999999988864432 112 66788888888999999999999998544
No 183
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=20.64 E-value=4.7e+02 Score=23.55 Aligned_cols=96 Identities=6% Similarity=-0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCCC-HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhh
Q psy6263 461 IGAVLGLGLAYAGTKR-QEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSR 539 (913)
Q Consensus 461 ~gA~LGLGlay~Gs~~-e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r 539 (913)
..+...+|.++...++ ++..+.+...+.-+....+ +-+.+|.++...++.+-....+..+.. ++.+...-
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p~~~~~ 91 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR----FFLGLGACRQAMGQYDLAIHSYSYGAV-----MDIXEPRF 91 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHH-----HSTTCTHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCCchH
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHhc
Q psy6263 540 FLPLALAITYLGKKDAIDTTLAALEV 565 (913)
Q Consensus 540 ~~~lgLgLl~~G~~e~~~~ll~~L~~ 565 (913)
...+|..+...|+-+.+...++....
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
No 184
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=20.61 E-value=5.7e+02 Score=24.57 Aligned_cols=223 Identities=9% Similarity=-0.060 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcC-CChhhhhHHHHHHH
Q psy6263 502 VAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVL-PDPFRSMAKMMLKM 580 (913)
Q Consensus 502 laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~-~~pi~r~~~~~~lg 580 (913)
+..|.++.-.++.+.+...++.+.+ ...+...-...+|..+...|+-+.+...++..... +++....-+...+|
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEA-----KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH-----TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Q ss_pred HHHhccCCH-HHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhhhhhhHHHHH
Q psy6263 581 CAYAGSGDV-LVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVA 659 (913)
Q Consensus 581 lAyaGTGn~-~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~ 659 (913)
..|...|+. .+++.+-.....+.. ...+..
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-------------------------------------------------~~~~~~ 112 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-------------------------------------------------RLDMYG 112 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-------------------------------------------------CTHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-------------------------------------------------cHHHHH
Q ss_pred HHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHHHHHHHHHhh
Q psy6263 660 ALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVG 739 (913)
Q Consensus 660 ~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~AiiALGlV~ 739 (913)
.+|.++...|+ .+.+...+...++..........-+|..+...+ .-..+++.+.+...........-..+|.....
T Consensus 113 ~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 188 (272)
T 3u4t_A 113 QIGSYFYNKGN---FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-EYVKADSSFVKVLELKPNIYIGYLWRARANAA 188 (272)
T ss_dssp HHHHHHHHTTC---HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC---HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Q ss_pred CCC---ChhHHHHHHHHHHHH---hcCChhHHHHHHHHHHHhhcCCCce
Q psy6263 740 AGT---NNARLATMLRQLAQY---HVKNTGHLFMVRIAQGLTHMGKGTV 782 (913)
Q Consensus 740 aGt---nn~ri~~~Lr~L~~~---~~~d~~~~f~~~iAqGLl~~Gkg~~ 782 (913)
.|. .+.-+..+-+-+... -..+.....-+...+|.++...|..
T Consensus 189 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 189 QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
No 185
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=20.01 E-value=5.3e+02 Score=23.90 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHhhh
Q psy6263 574 AKMMLKMCAYAGSGDVLVVQEFLHVC 599 (913)
Q Consensus 574 ~~~~~lglAyaGTGn~~~Iq~LLh~~ 599 (913)
.....+|.+|...|+.....+.+.-+
T Consensus 122 ~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 122 EVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34566888899999875554444444
Done!