RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6263
(913 letters)
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 55
Score = 29.7 bits (67), Expect = 0.17
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 347 DSARHNLASTFVNAFVNAGFSRDKLVSV 374
+S + + ++ F + GF +DK+V V
Sbjct: 2 ESDLYGIDHDLIDEFESQGFEKDKIVEV 29
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 30.9 bits (69), Expect = 0.90
Identities = 62/453 (13%), Positives = 136/453 (30%), Gaps = 47/453 (10%)
Query: 87 LKEACEKMTDQKPKKLLCSIISVLAMSQDNVE--QECLKYCLMAKQKDVGDWGHEYVRQL 144
LK +K K+ + +I+ + + +D + + C+ ++ + Y+
Sbjct: 15 LKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVN-CMQTDNLELKKLVYLYLMNY 73
Query: 145 EAEIAEEWATNKYEKPQLLELIEDIIQFDMKH-NAEIQACDL--LMEIDHLELLDKHMDV 201
+P + + + D + N I+A + + I ++
Sbjct: 74 A-----------KSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKIT------ 116
Query: 202 TNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQ 261
+C L C + R V + + + D+ + +
Sbjct: 117 ---EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---------VEDQGFLDSLRD 164
Query: 262 LCEDPVVRKQLAYMAGRQQITIELPDE---MPDKNDLQIIMTNSHINDHF--HSLARELD 316
L D +A +I+ P+ + ++ ++T + + + L
Sbjct: 165 LIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLS 224
Query: 317 IMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVED 376
PK E E + R ++ V SA L ++ + L +
Sbjct: 225 NYNPKDDREAQS-ICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAP 283
Query: 377 GNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCG 436
+ + A ++ LI + I + D I ++
Sbjct: 284 PLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLA 343
Query: 437 VRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAG--TKRQEVVTLLLPVLTDRKSTP 494
+ LA L +Y + AV +G + V+ LL ++ + +
Sbjct: 344 SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVN-- 401
Query: 495 EVVAFAAVAASLIYVGTGYHEVASAILQTLIEL 527
VV A V + + Y +I+ TL E
Sbjct: 402 YVVQEAIVV--IRDIFRKYPNKYESIIATLCEN 432
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 30.5 bits (67), Expect = 0.95
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 445 LALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDR-KSTPEVVAFAAVA 503
+A+L D + N+ + LR+ ++ L + + LLP LTD EV+ A
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQ 71
Query: 504 ASLIYVGTGYHEVASAILQTLIELPVSE 531
G E +L L L E
Sbjct: 72 LGTFTTLVGGPEYVHCLLPPLESLATVE 99
Score = 29.0 bits (63), Expect = 3.4
Identities = 61/517 (11%), Positives = 131/517 (25%), Gaps = 22/517 (4%)
Query: 24 DEMSEEDKRLQEDLNMLVEKIKGSD-KHLYLPALESM----RDLIRTSTT-SMTSV--PM 75
+ E L E L + G + H LP LES+ ++R S+ ++
Sbjct: 59 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH 118
Query: 76 PLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGD 135
L H+ L + + C + SV + + L+ D
Sbjct: 119 SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDD-- 176
Query: 136 WGHEYVRQLEAEIAEEWATNKYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELL 195
VR+ A E+A E+I ++ + ++ +LL
Sbjct: 177 --TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234
Query: 196 DKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPS 255
+ + V E + + N
Sbjct: 235 PQEDLEALVMPTLRQAAED--KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD 292
Query: 256 VLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSLAREL 315
+ V++ ++ + + + +P +L + +
Sbjct: 293 CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352
Query: 316 DIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVE 375
I+ E + + + + S + ++ + E
Sbjct: 353 PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE 412
Query: 376 DGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDY-IKAGALLALG--I 432
D + M A LG+ D L + Y I+ A L +
Sbjct: 413 DAKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV 469
Query: 433 VNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTD--R 490
G + + + + R+ + + + + +LP +
Sbjct: 470 EKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG 529
Query: 491 KSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIEL 527
V A + I + S + L +L
Sbjct: 530 DPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 184
Score = 27.8 bits (61), Expect = 4.5
Identities = 14/69 (20%), Positives = 27/69 (39%)
Query: 514 HEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSM 573
H +A A + L++LP + YS + LA + + + L +P +
Sbjct: 66 HVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLT 125
Query: 574 AKMMLKMCA 582
+ +LK
Sbjct: 126 LQYLLKHFF 134
>d1jnda1 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth factor-2
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 327
Score = 28.2 bits (62), Expect = 4.9
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 338 PTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLV---SVEDGNKWMYK---NKQHGMLS 391
P Y+ D D H A V +++ GF +K+ + +D + K +
Sbjct: 238 PIYHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATDDPDSASNKAAYARVKN--- 294
Query: 392 AAASLGLIYLWDVDG 406
LG + L+D+
Sbjct: 295 ----LGGVALFDLSY 305
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.382
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,258,278
Number of extensions: 153433
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 12
Length of query: 913
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 819
Effective length of database: 1,116,976
Effective search space: 914803344
Effective search space used: 914803344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)