BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6264
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VJ38|RM13_DROME 39S ribosomal protein L13, mitochondrial OS=Drosophila melanogaster
GN=mRpL13 PE=2 SV=2
Length = 178
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 89/120 (74%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+R IALPG EW KR YFHHTGYPGG SWTLAWQLHE DPT+VMKKAV + +L +
Sbjct: 59 INTREIALPGDEWVKRVYFHHTGYPGGASWTLAWQLHEKDPTMVMKKAVYNSMRGNLQRR 118
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYILK 120
M RLH+F D +VPE++L+NV++QIR R +P+ L + ++ FP I D+PKDYIL+
Sbjct: 119 HTMQRLHLFADDQVPEEILQNVTNQIRTPRSIPQRLDHIDKETLENFPNIMDYPKDYILR 178
>sp|Q3SYS1|RM13_BOVIN 39S ribosomal protein L13, mitochondrial OS=Bos taurus GN=MRPL13
PE=1 SV=1
Length = 178
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 82/119 (68%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
MN+RHIA G +W+++ Y HTGYPGG A QLH DP ++K A+ LP++L +
Sbjct: 60 MNTRHIAFSGNKWEQKVYSSHTGYPGGFKQVTAAQLHRKDPVAIVKLAIYGMLPKNLHRR 119
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYIL 119
LM RLH+FPD+++PED+LKN++ ++ Q R VPR L Y+ +E++ FP++ P+DY L
Sbjct: 120 TLMQRLHLFPDEDIPEDILKNLTEELPQPRKVPRRLDEYTQEEIEAFPRVWSPPEDYRL 178
>sp|Q9BYD1|RM13_HUMAN 39S ribosomal protein L13, mitochondrial OS=Homo sapiens GN=MRPL13
PE=1 SV=1
Length = 178
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 80/119 (67%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
MN+RHIA G +W+++ Y HTGYPGG A QLH DP ++K A+ LP++L +
Sbjct: 60 MNTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRR 119
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYIL 119
+M RLH+FPD+ +PED+LKN+ ++ Q R +P+ L Y+ +E+D FP++ P+DY L
Sbjct: 120 TMMERLHLFPDEYIPEDILKNLVEELPQPRKIPKRLDEYTQEEIDAFPRLWTPPEDYRL 178
>sp|Q9D1P0|RM13_MOUSE 39S ribosomal protein L13, mitochondrial OS=Mus musculus GN=Mrpl13
PE=2 SV=1
Length = 178
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 79/117 (67%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+RHIA G +W+++ Y HTGYPGG A QLH DP ++K A+ LP++L +
Sbjct: 60 INTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHRKDPVAIVKLAIYGMLPKNLHRR 119
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDY 117
+M RLH+FPD+++PED+LKN+ ++ Q R VP+ L Y+ +E++ FP++ P D+
Sbjct: 120 TMMQRLHLFPDEDIPEDILKNLVEELPQPRRVPKRLDEYTQEEIEAFPRVWTPPDDF 176
>sp|B7ICN0|RL13_THEAB 50S ribosomal protein L13 OS=Thermosipho africanus (strain TCF52B)
GN=rplM PE=3 SV=1
Length = 149
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ I L G +W ++ Y+ H+GYPGG+ A QL + +P +++ AV+ LP++++
Sbjct: 64 INADKIKLTGKKWDQKIYYRHSGYPGGIKEFTARQLQQRNPEKLIQLAVKRMLPKTILGR 123
Query: 61 RLMARLHIFPDQEVPEDLLK 80
+ + RL I+ E P K
Sbjct: 124 KALKRLKIYAGSEHPHSAQK 143
>sp|Q6ANL8|RL13_DESPS 50S ribosomal protein L13 OS=Desulfotalea psychrophila (strain
LSv54 / DSM 12343) GN=rplM PE=3 SV=1
Length = 142
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 2 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKFR 61
N+ IAL G +W + Y+ HTGY GG+ T A +L E PT ++ KAVR LP++ +
Sbjct: 58 NAEKIALTGKKWDDKTYYRHTGYIGGIKETSAKELLEKHPTDLITKAVRGMLPKNKMGRA 117
Query: 62 LMARLHIF 69
+ +L ++
Sbjct: 118 QLKKLKVY 125
>sp|B2GJ23|RL13_KOCRD 50S ribosomal protein L13 OS=Kocuria rhizophila (strain ATCC 9341 /
DSM 348 / NBRC 103217 / DC2201) GN=rplM PE=3 SV=1
Length = 147
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +AL G + +K+ + H+GYPGG+ T +L E +PT ++KA++ LP++ +
Sbjct: 57 INAEKVALTGSKLQKKRAYRHSGYPGGLKSTSYAELLEKNPTRAVEKAIKGMLPKNKLAA 116
Query: 61 RLMARLHIFPDQEVP 75
+ +++L ++ E P
Sbjct: 117 QQLSKLKVYAGAEHP 131
>sp|A1ATL1|RL13_PELPD 50S ribosomal protein L13 OS=Pelobacter propionicus (strain DSM
2379) GN=rplM PE=3 SV=1
Length = 142
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ IAL G + ++Y+ H+G+PGG+ A +L E P ++K+AV+ LP++ +
Sbjct: 57 VNAEKIALTGRKLADKSYYSHSGFPGGLKEISAGKLLEKKPEELIKRAVKGMLPKNKLSR 116
Query: 61 RLMARLHIFPDQEVPED 77
++ +L I+ P D
Sbjct: 117 HMLKKLKIYAGSSHPHD 133
>sp|Q748X4|RL13_GEOSL 50S ribosomal protein L13 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=rplM PE=3 SV=1
Length = 143
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ + L G + + Y+HHTG+PGG+ A +L E P +++KAV+ LP++ +
Sbjct: 58 VNAAKLQLTGNKLADKMYYHHTGFPGGIKSITAGKLIEKKPEDLIRKAVKGMLPKNKLAR 117
Query: 61 RLMARLHIFPDQEVPED 77
++ +L ++ E P +
Sbjct: 118 HMLKKLKVYAGPEHPHE 134
>sp|C5CC33|RL13_MICLC 50S ribosomal protein L13 OS=Micrococcus luteus (strain ATCC 4698 /
DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC
2665 / VKM Ac-2230) GN=rplM PE=3 SV=1
Length = 147
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 51/89 (57%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +AL G + +K+ + H+GYPGG+ +L E +P ++KAV+ LP++ +
Sbjct: 57 VNAEKVALTGAKLEKKRAYRHSGYPGGLKSQSYAELLETNPVRAVEKAVKGMLPKNSLAA 116
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQL 89
+ +++L ++ E P + + +I Q+
Sbjct: 117 QQLSKLKVYKGAEHPHTAQQPQTFEIGQV 145
>sp|Q6B8X5|RK13_GRATL 50S ribosomal protein L13, chloroplastic OS=Gracilaria
tenuistipitata var. liui GN=rpl13 PE=3 SV=1
Length = 143
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+NSR I + G ++ ++ Y H+GYPGG+ ++ P +++K+++ LP+ ++
Sbjct: 57 INSRSINVTGKKFVQKTYKRHSGYPGGLKVQKFNEILNQRPNRILEKSIKGMLPKGILGR 116
Query: 61 RLMARLHIFPDQEVPED 77
+L +L I+PD P +
Sbjct: 117 QLFRQLKIYPDNIHPHE 133
>sp|A5IAL7|RL13_LEGPC 50S ribosomal protein L13 OS=Legionella pneumophila (strain Corby)
GN=rplM PE=3 SV=1
Length = 144
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%)
Query: 2 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKFR 61
N+ + + G ++K + Y HHTG+PGG+ +L + +PT +++ AV+ LP++ +
Sbjct: 58 NAEKVVVTGRKFKNKMYHHHTGFPGGIKSASFEKLQDKNPTKIIELAVKGMLPKNPLGRE 117
Query: 62 LMARLHIFPDQEVP 75
+ +L ++ E P
Sbjct: 118 MYRKLKVYAGSEHP 131
>sp|Q5X1I1|RL13_LEGPA 50S ribosomal protein L13 OS=Legionella pneumophila (strain Paris)
GN=rplM PE=3 SV=1
Length = 144
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%)
Query: 2 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKFR 61
N+ + + G ++K + Y HHTG+PGG+ +L + +PT +++ AV+ LP++ +
Sbjct: 58 NAEKVVVTGRKFKNKMYHHHTGFPGGIKSASFEKLQDKNPTKIIELAVKGMLPKNPLGRE 117
Query: 62 LMARLHIFPDQEVP 75
+ +L ++ E P
Sbjct: 118 MYRKLKVYAGSEHP 131
>sp|B9E9M3|RL13_MACCJ 50S ribosomal protein L13 OS=Macrococcus caseolyticus (strain
JCSC5402) GN=rplM PE=3 SV=1
Length = 145
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ I L G + + + Y+ H+ +PGG+ A +L E +P +M+ +++ LP+ +
Sbjct: 58 INAEKIYLSGNKAEDKIYYRHSNHPGGIKSISAGELREKNPVRLMETSIKGMLPKGSLGD 117
Query: 61 RLMARLHIFPDQEVP 75
++ +LH++ E P
Sbjct: 118 KMFKKLHVYAGAEHP 132
>sp|Q3IG26|RL13_PSEHT 50S ribosomal protein L13 OS=Pseudoalteromonas haloplanktis (strain
TAC 125) GN=rplM PE=3 SV=1
Length = 142
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ + + G ++K + Y+ H+G+PGG+ T +L P ++++KAV+ LPR +
Sbjct: 57 INAEKVTVTGNKFKNKVYYSHSGFPGGLKSTTFDKLQAAKPEMIIEKAVKGMLPRGPLGR 116
Query: 61 RLMARLHIFPDQE 73
+ +L ++ E
Sbjct: 117 AMYRKLKVYTGTE 129
>sp|Q4FRE5|RL13_PSYA2 50S ribosomal protein L13 OS=Psychrobacter arcticus (strain DSM
17307 / 273-4) GN=rplM PE=3 SV=1
Length = 142
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ IA+ G + + + Y+ H+GYPGG+ T +L P V+ KAV+ LP+ + +
Sbjct: 57 INAEKIAVTGKKAQDKKYYRHSGYPGGIKETNFTKLIAHKPEDVLHKAVKGMLPKGPLGY 116
Query: 61 RLMARLHIFPDQEVPED 77
++ +L ++ E P +
Sbjct: 117 AMIKKLKLYAGTEHPHE 133
>sp|Q15PI3|RL13_PSEA6 50S ribosomal protein L13 OS=Pseudoalteromonas atlantica (strain
T6c / ATCC BAA-1087) GN=rplM PE=3 SV=1
Length = 142
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ + + G + K + Y+ HTGYPGG+ T +L P ++++KAV+ LP+ +
Sbjct: 57 INAEKVVVTGNKAKGKMYYSHTGYPGGLKETNFEKLQAFKPEMIIEKAVKGMLPKGPLGR 116
Query: 61 RLMARLHIFPDQE 73
+ ++ +F E
Sbjct: 117 DMFRKMKVFAGPE 129
>sp|Q5WT90|RL13_LEGPL 50S ribosomal protein L13 OS=Legionella pneumophila (strain Lens)
GN=rplM PE=3 SV=1
Length = 144
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%)
Query: 2 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKFR 61
N+ + + G ++K + Y HHTG+PGG+ +L + +PT +++ AV+ LP++ +
Sbjct: 58 NAEKVIVTGRKFKNKMYHHHTGFPGGIKSASFEKLQDKNPTKIIELAVKGMLPKNPLGRE 117
Query: 62 LMARLHIFPDQEVP 75
+ +L ++ E P
Sbjct: 118 MYRKLKVYAGSEHP 131
>sp|Q5ZS12|RL13_LEGPH 50S ribosomal protein L13 OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=rplM PE=3 SV=2
Length = 144
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%)
Query: 2 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKFR 61
N+ + + G ++K + Y HHTG+PGG+ +L + +PT +++ AV+ LP++ +
Sbjct: 58 NAEKVIVTGRKFKNKMYHHHTGFPGGIKSASFEKLQDKNPTKIIELAVKGMLPKNPLGRE 117
Query: 62 LMARLHIFPDQEVP 75
+ +L ++ E P
Sbjct: 118 MYRKLKVYAGSEHP 131
>sp|B5EFM9|RL13_GEOBB 50S ribosomal protein L13 OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=rplM PE=3 SV=1
Length = 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ IAL G + + Y+ H+ YPGG+ A +L + P ++KKAV+ LP++ +
Sbjct: 57 VNAEKIALTGRKLADKTYYSHSSYPGGLKEITAGKLLDKKPEELLKKAVKGMLPKNKLAR 116
Query: 61 RLMARLHIFPDQEVP 75
++ +L I+ P
Sbjct: 117 HMLKKLKIYSGGAHP 131
>sp|A7NCM5|RL13_FRATF 50S ribosomal protein L13 OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=rplM PE=3 SV=1
Length = 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ IA+ G + K + Y+HHTGY GG+ +L P ++KAVR LPR+ +
Sbjct: 57 VNAEKIAVTGNKRKAKTYYHHTGYIGGIKSVSFEKLIATHPERAIEKAVRGMLPRTPLGR 116
Query: 61 RLMARLHIFPDQEVP 75
+ +L ++ + P
Sbjct: 117 TMFKKLKVYAGEAHP 131
>sp|A9WMG0|RL13_RENSM 50S ribosomal protein L13 OS=Renibacterium salmoninarum (strain
ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB
2235) GN=rplM PE=3 SV=1
Length = 147
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 52/89 (58%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +AL G + +++ + H+GYPGG+S +L E +P ++KA++ LP++ +
Sbjct: 57 INAEKVALTGAKLEQKRAYRHSGYPGGLSSVNYAELLEKNPVRAVEKAIKGMLPKTSLAA 116
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQL 89
+ +++L ++ E P + + +I Q+
Sbjct: 117 QQLSKLKVYRGAEHPHAAQQPKTFEITQV 145
>sp|C6E4S8|RL13_GEOSM 50S ribosomal protein L13 OS=Geobacter sp. (strain M21) GN=rplM
PE=3 SV=1
Length = 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ IAL G + + Y+ H+ YPGG+ A +L + P ++KKAV+ LP++ +
Sbjct: 57 VNAEKIALTGRKLADKVYYSHSSYPGGLKEITAGKLLDKKPEELLKKAVKGMLPKNKLAR 116
Query: 61 RLMARLHIFPDQEVP 75
++ +L I+ P
Sbjct: 117 HMLKKLKIYSGGAHP 131
>sp|Q057I8|RL13_BUCCC 50S ribosomal protein L13 OS=Buchnera aphidicola subsp. Cinara
cedri (strain Cc) GN=rplM PE=3 SV=1
Length = 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGV-SWTLAW-QLHEIDPTLVMKKAVRWELPRSLI 58
+N+ I + G + K + Y+HH+GY GG+ +T + LH PT ++KKA++ LP+ +
Sbjct: 57 INASKIVVTGNKEKNKFYYHHSGYVGGIKKYTFKYMMLHH--PTRIIKKAIKGMLPKGSL 114
Query: 59 KFRLMARLHIFPDQE 73
++ +L +FP +
Sbjct: 115 GQKIFKKLKVFPFNQ 129
>sp|Q3A3B6|RL13_PELCD 50S ribosomal protein L13 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=rplM PE=3 SV=1
Length = 142
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ + L G + + Y+ H+GYPGG+ A Q+ E P ++KKAV+ LP++ +
Sbjct: 57 VNAEKVKLTGNKMSAKMYYRHSGYPGGLRQANAAQMLEKKPEDLIKKAVKGMLPKNKLGR 116
Query: 61 RLMARLHIFPDQEVP 75
+ +L ++ + P
Sbjct: 117 DMFRKLKVYTGSDHP 131
>sp|Q4A6X4|RL13_MYCS5 50S ribosomal protein L13 OS=Mycoplasma synoviae (strain 53)
GN=rplM PE=3 SV=1
Length = 144
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ + L G + K + Y+ H+GYPGG+ A +L E PT +++KA+ +P + +
Sbjct: 58 INAEKVKLTGKKEKNKVYYSHSGYPGGLKARTAEKLREEKPTALLEKAISGMIPHTKLGN 117
Query: 61 RLMARLHIFPDQE 73
+ L+++ E
Sbjct: 118 QQRKNLYVYAGPE 130
>sp|A6W5X0|RL13_KINRD 50S ribosomal protein L13 OS=Kineococcus radiotolerans (strain ATCC
BAA-149 / DSM 14245 / SRS30216) GN=rplM PE=3 SV=1
Length = 147
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 45/75 (60%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +AL G + ++ + H+GYPGG+ T L E +P ++KA+R +P++ +
Sbjct: 57 VNAAKVALTGSKRDQKVAYRHSGYPGGLKATSYVDLLEQNPEKAVEKAIRGMIPKNSLGR 116
Query: 61 RLMARLHIFPDQEVP 75
+++++L ++ E P
Sbjct: 117 QVLSKLKVYAGAEHP 131
>sp|B3PMK1|RL13_MYCA5 50S ribosomal protein L13 OS=Mycoplasma arthritidis (strain
158L3-1) GN=rplM PE=3 SV=1
Length = 144
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N++ + L + +K+ Y+HHTGYPGG+ A L + P +++KAVR LP + +
Sbjct: 58 INAKEVLLTAKKDEKKIYYHHTGYPGGLKQITAKDLRQKHPEALVEKAVRGMLPHTALGR 117
Query: 61 RLMARLHIF--PDQE 73
+ L ++ PD +
Sbjct: 118 KQFRNLFVYAGPDHK 132
>sp|C5C020|RL13_BEUC1 50S ribosomal protein L13 OS=Beutenbergia cavernae (strain ATCC
BAA-8 / DSM 12333 / NBRC 16432) GN=rplM PE=3 SV=1
Length = 147
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +AL G + +++ + H+GYPGG+ T +L E P ++KA+R +P++ +
Sbjct: 57 VNADKVALTGNKEQQKLAYRHSGYPGGLKATSYAELLEKRPERAVEKAIRGMVPKNSLGR 116
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQL 89
M +L ++ E P K + +I Q+
Sbjct: 117 AQMRKLKVYAGAEHPHGAQKPQTFEITQI 145
>sp|Q88XU8|RL13_LACPL 50S ribosomal protein L13 OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=rplM PE=3 SV=1
Length = 147
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +AL G + +++ Y+HHT Y GG+ A +PT +++ +V+ LP + +
Sbjct: 58 INASKVALTGKKAERKIYYHHTAYAGGLKERTAGDFLAKEPTKLIETSVKGMLPHNSLGH 117
Query: 61 RLMARLHIFPDQE 73
++ +LH++ E
Sbjct: 118 KMGLKLHVYAGAE 130
>sp|Q03PY9|RL13_LACBA 50S ribosomal protein L13 OS=Lactobacillus brevis (strain ATCC 367
/ JCM 1170) GN=rplM PE=3 SV=1
Length = 147
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 42/73 (57%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +AL G + + Y+HHTG+ GG+ A + +P +++ +V+ LP++ +
Sbjct: 58 INAEKVALTGRKASNKIYYHHTGFAGGLKSRTAGNFRDENPEKLIETSVQGMLPKNSLGH 117
Query: 61 RLMARLHIFPDQE 73
++ +LH++ +
Sbjct: 118 QMALKLHVYAGAD 130
>sp|Q2LPM2|RL13_SYNAS 50S ribosomal protein L13 OS=Syntrophus aciditrophicus (strain SB)
GN=rplM PE=3 SV=1
Length = 142
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 44/73 (60%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ + L G + + + Y+HH+GYPGG+ A ++ + PT V+ AV+ LP++ +
Sbjct: 57 VNAEKMVLTGKKLRDKIYYHHSGYPGGLKEKTAGKMMQEKPTDVLWLAVKGMLPKNSLGR 116
Query: 61 RLMARLHIFPDQE 73
R++ +L ++ +
Sbjct: 117 RMLRKLKVYAGND 129
>sp|A4IX24|RL13_FRATW 50S ribosomal protein L13 OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=rplM PE=3 SV=1
Length = 142
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +A+ G + K + Y+HHTGY GG+ +L P ++KAVR LPR+ +
Sbjct: 57 VNAEKVAVTGNKRKAKTYYHHTGYIGGIKSVSFEKLIATHPERAIEKAVRGMLPRTPLGR 116
Query: 61 RLMARLHIFPDQEVP 75
+ +L ++ + P
Sbjct: 117 TMFKKLKVYAGEAHP 131
>sp|Q0BLK8|RL13_FRATO 50S ribosomal protein L13 OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=rplM PE=3 SV=1
Length = 142
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +A+ G + K + Y+HHTGY GG+ +L P ++KAVR LPR+ +
Sbjct: 57 VNAEKVAVTGNKRKAKTYYHHTGYIGGIKSVSFEKLIATHPERAIEKAVRGMLPRTPLGR 116
Query: 61 RLMARLHIFPDQEVP 75
+ +L ++ + P
Sbjct: 117 TMFKKLKVYAGEAHP 131
>sp|A0Q7F4|RL13_FRATN 50S ribosomal protein L13 OS=Francisella tularensis subsp. novicida
(strain U112) GN=rplM PE=3 SV=1
Length = 142
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +A+ G + K + Y+HHTGY GG+ +L P ++KAVR LPR+ +
Sbjct: 57 VNAEKVAVTGNKRKAKTYYHHTGYIGGIKSVSFEKLIATHPERAIEKAVRGMLPRTPLGR 116
Query: 61 RLMARLHIFPDQEVP 75
+ +L ++ + P
Sbjct: 117 TMFKKLKVYAGEAHP 131
>sp|B2SGW2|RL13_FRATM 50S ribosomal protein L13 OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=rplM PE=3 SV=1
Length = 142
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +A+ G + K + Y+HHTGY GG+ +L P ++KAVR LPR+ +
Sbjct: 57 VNAEKVAVTGNKRKAKTYYHHTGYIGGIKSVSFEKLIATHPERAIEKAVRGMLPRTPLGR 116
Query: 61 RLMARLHIFPDQEVP 75
+ +L ++ + P
Sbjct: 117 TMFKKLKVYAGEAHP 131
>sp|Q2A332|RL13_FRATH 50S ribosomal protein L13 OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=rplM PE=3 SV=1
Length = 142
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +A+ G + K + Y+HHTGY GG+ +L P ++KAVR LPR+ +
Sbjct: 57 VNAEKVAVTGNKRKAKTYYHHTGYIGGIKSVSFEKLIATHPERAIEKAVRGMLPRTPLGR 116
Query: 61 RLMARLHIFPDQEVP 75
+ +L ++ + P
Sbjct: 117 TMFKKLKVYAGEAHP 131
>sp|Q3Z950|RL13_DEHE1 50S ribosomal protein L13 OS=Dehalococcoides ethenogenes (strain
195) GN=rplM PE=3 SV=1
Length = 143
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 44/75 (58%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N++ + + G + ++ Y+ H+G+PGG L + P V++ AV+ +PR+ +
Sbjct: 57 INAKKVTVTGNKLDQKIYYRHSGFPGGFRQEKLGDLLKTKPLFVIEHAVKGMIPRNTLGA 116
Query: 61 RLMARLHIFPDQEVP 75
+++A+L ++ +E P
Sbjct: 117 QILAKLKVYEGEEHP 131
>sp|A8F8P6|RL13_THELT 50S ribosomal protein L13 OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=rplM PE=3 SV=1
Length = 147
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ + L G + K+ Y+H++GYPGG+ A QL E P ++ AV+ LP++ +
Sbjct: 62 INADKVLLTGKKLDKKMYYHYSGYPGGLKQLTARQLLEKHPERLIYLAVKRMLPKAALGT 121
Query: 61 RLMARLHIFPDQEVPEDLLK 80
+ + RL ++ P + K
Sbjct: 122 KYLKRLKVYASDSHPHEAQK 141
>sp|Q3ZZP3|RL13_DEHSC 50S ribosomal protein L13 OS=Dehalococcoides sp. (strain CBDB1)
GN=rplM PE=3 SV=1
Length = 143
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N++ I + G + ++ Y+ H+G+PGG L + P V++ AV+ +PR+ +
Sbjct: 57 VNAKKITVTGNKLDQKMYYRHSGFPGGFRQEKLGDLLKTKPLFVIEHAVKGMIPRNTLGA 116
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQ 85
+++A+L ++ E P V S+
Sbjct: 117 QILAKLKVYEGAEHPHASQTGVVSK 141
>sp|Q8D361|RL13_WIGBR 50S ribosomal protein L13 OS=Wigglesworthia glossinidia brevipalpis
GN=rplM PE=3 SV=1
Length = 142
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+NS+ I + G + K + Y+HHTGY GG+ + + + LV+ K+V+ LP+ +
Sbjct: 57 INSKKIKITGKKLKNKFYYHHTGYSGGIKKISLENMIKNNSELVIYKSVKGMLPKGSLGR 116
Query: 61 RLMARLHIFPDQE 73
++ +L IF +
Sbjct: 117 VMIKKLKIFSGES 129
>sp|A5FRV8|RL13_DEHSB 50S ribosomal protein L13 OS=Dehalococcoides sp. (strain BAV1)
GN=rplM PE=3 SV=1
Length = 143
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N++ I + G + ++ Y+ H+G+PGG L + P V++ AV+ +PR+ +
Sbjct: 57 VNAKKITVTGNKLDQKMYYRHSGFPGGFRQEKLGDLLKTKPLFVIEHAVKGMIPRNTLGA 116
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQ 85
+++A+L ++ E P V S+
Sbjct: 117 QILAKLKVYEGAEHPHASQTGVVSK 141
>sp|B5Y7R3|RL13_COPPD 50S ribosomal protein L13 OS=Coprothermobacter proteolyticus
(strain ATCC 35245 / DSM 5265 / BT) GN=rplM PE=3 SV=1
Length = 143
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +AL G + K+ Y+ H+GY GG T AWQL + P ++ ++V+ LP++ +
Sbjct: 57 INAEKVALSGSKELKKVYYDHSGYLGGQRVTPAWQLRQKKPEQLIYRSVKGMLPKNSLGR 116
Query: 61 RLMARLHIFPDQEVP 75
R + L ++ E P
Sbjct: 117 RQITHLKVYAGPEHP 131
>sp|Q04G52|RL13_OENOB 50S ribosomal protein L13 OS=Oenococcus oeni (strain ATCC BAA-331 /
PSU-1) GN=rplM PE=3 SV=1
Length = 148
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ + L G + + Y+HH+GYPGG+ A L E +P +++ +V+ LP++ +
Sbjct: 58 INADKVQLTGKKATDKTYYHHSGYPGGLKARKAGTLREKNPKKLIELSVQGMLPKNTLGR 117
Query: 61 RLMARLHIFPDQE 73
+LH++ E
Sbjct: 118 AQGLKLHVYASGE 130
>sp|B9JVC5|RL13_AGRVS 50S ribosomal protein L13 OS=Agrobacterium vitis (strain S4 / ATCC
BAA-846) GN=rplM PE=3 SV=1
Length = 154
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEID-PTLVMKKAVRWELPRSLIK 59
+N+ + L G ++ + Y+ HTGYPGG+ A Q+ E P V++KAV +PR +
Sbjct: 57 INAEKVVLTGKKYTDKTYYWHTGYPGGIKERTARQIIEGRFPERVLEKAVERMIPRGPLG 116
Query: 60 FRLMARLHIFPDQEVPEDLLKNVSSQIRQL 89
R M L ++ P + + V+ + +L
Sbjct: 117 RRQMKNLRVYAGSAHPHEAQQPVALDVAKL 146
>sp|Q82UK0|RL13_NITEU 50S ribosomal protein L13 OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=rplM PE=3 SV=1
Length = 144
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ + + G + + + Y+ H+GYPGG+ T ++HE PT ++KAV+ LP+ + +
Sbjct: 57 INADKLRVTGNKAEDKKYYRHSGYPGGIYETTFKKMHERFPTRPLEKAVKGMLPKGPLGY 116
Query: 61 RLMARLHIFPDQEVP 75
++ +L I+ P
Sbjct: 117 AMIKKLKIYAGDTHP 131
>sp|A1R8Q2|RL13_ARTAT 50S ribosomal protein L13 OS=Arthrobacter aurescens (strain TC1)
GN=rplM PE=3 SV=1
Length = 147
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 51/89 (57%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +AL G + +++ + H+GYPGG++ +L E +P ++KA++ LP++ +
Sbjct: 57 INAEKVALTGAKLEQKRAYRHSGYPGGLTSVNYAELLESNPVRAVEKAIKGMLPKNSLAA 116
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQL 89
+ + +L ++ E P + + +I Q+
Sbjct: 117 QQLGKLKVYAGPEHPHAAQQPKTFEITQV 145
>sp|A0JZ27|RL13_ARTS2 50S ribosomal protein L13 OS=Arthrobacter sp. (strain FB24) GN=rplM
PE=3 SV=1
Length = 147
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 51/89 (57%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +AL G + +++ + H+GYPGG++ +L E +P ++KA++ LP++ +
Sbjct: 57 INAEKVALTGAKLEQKRAYRHSGYPGGLTSVNYAELLESNPVRAVEKAIKGMLPKNSLAA 116
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQL 89
+ + +L ++ E P + + +I Q+
Sbjct: 117 QQLGKLKVYRGAEHPHAAQQPKTFEISQV 145
>sp|B1M200|RL13_METRJ 50S ribosomal protein L13 OS=Methylobacterium radiotolerans (strain
ATCC 27329 / DSM 1819 / JCM 2831) GN=rplM PE=3 SV=1
Length = 153
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGV-SWTLAWQLHEIDPTLVMKKAVRWELPRSLIK 59
+N+ + G ++ +++YF+HTGYPGG+ T + L P V++KAV LPR +
Sbjct: 57 INAEKVKFTGRKYNQKSYFYHTGYPGGIKERTAKFILEGRFPERVVEKAVERMLPRGPLF 116
Query: 60 FRLMARLHIFPDQEVPED 77
+++ L ++ E P +
Sbjct: 117 RQILGNLRVYKGTEHPHE 134
>sp|B3EA22|RL13_GEOLS 50S ribosomal protein L13 OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=rplM PE=3 SV=1
Length = 142
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ IAL G + + Y+ H+G+PGG+ + A + P +++KAV+ LP++ +
Sbjct: 57 VNAEKIALTGNKMADKVYYSHSGFPGGIKSSTAAAMLSKKPEELIRKAVKGMLPKNKLAR 116
Query: 61 RLMARLHIFPDQEVPED 77
++ +L ++ P +
Sbjct: 117 HMLKKLKVYSGGAHPHE 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,005,214
Number of Sequences: 539616
Number of extensions: 1921360
Number of successful extensions: 4907
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 4263
Number of HSP's gapped (non-prelim): 646
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)