Query psy6264
Match_columns 120
No_of_seqs 149 out of 1030
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 21:57:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ftc_H L13MT, MRP-L13, 39S rib 100.0 1.5E-37 5.1E-42 228.9 6.5 89 1-89 60-148 (148)
2 3v2d_N 50S ribosomal protein L 100.0 3.5E-37 1.2E-41 225.2 5.3 85 1-85 55-139 (140)
3 3r8s_J 50S ribosomal protein L 100.0 7.7E-37 2.6E-41 223.8 4.2 85 1-85 57-141 (142)
4 3f1f_N 50S ribosomal protein L 100.0 2.3E-36 7.8E-41 225.3 4.5 85 1-85 78-162 (163)
5 2zjr_G 50S ribosomal protein L 100.0 6.2E-36 2.1E-40 225.0 6.1 89 1-89 83-171 (174)
6 3bbo_L Ribosomal protein L13; 100.0 1.1E-34 3.6E-39 227.6 4.7 90 1-90 156-245 (250)
7 1j3a_A 50S ribosomal protein L 100.0 4.8E-35 1.6E-39 214.3 1.2 103 1-105 31-135 (142)
8 4b6a_O 60S ribosomal protein L 100.0 5.8E-33 2E-37 212.7 0.8 83 1-83 36-119 (199)
9 1vq8_J 50S ribosomal protein L 100.0 1.2E-31 4.1E-36 196.9 0.5 97 1-105 39-136 (145)
10 3jyw_M 60S ribosomal protein L 99.9 1.7E-29 6E-34 190.7 1.5 106 1-106 30-137 (178)
11 4a17_I RPL13A, 60S ribosomal p 99.9 2.3E-29 8E-34 192.6 0.1 83 1-83 35-118 (198)
12 2zkr_j 60S ribosomal protein L 99.9 5.1E-28 1.8E-32 185.8 1.3 77 1-85 36-121 (203)
13 3iz5_K 60S ribosomal protein L 99.9 6.7E-28 2.3E-32 185.5 -0.7 81 1-83 41-124 (206)
14 2fho_A Spliceosomal protein SF 40.2 15 0.00052 21.6 1.8 29 90-118 13-45 (47)
15 2eo2_A Adult MALE hypothalamus 24.1 18 0.0006 23.0 0.2 20 97-116 48-67 (71)
No 1
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.5e-37 Score=228.94 Aligned_cols=89 Identities=46% Similarity=0.814 Sum_probs=87.2
Q ss_pred CccceeEeeCccccceEEEEecCCCCCccccChhhhhhcChHHHHHHHHHhcCCCChhHHHHhccccccCCCCCChhhhc
Q psy6264 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLK 80 (120)
Q Consensus 1 vNaeki~itG~k~~~K~y~~htgypGglk~~~~~~~~~r~P~~il~~AVrgMLPkn~lgr~~l~rLkvy~G~~hP~~~~~ 80 (120)
||||+|+|||+||++|.||+|||||||+++.+++++++++|++||++||+||||||.+|+.+|+||+||+|++|||++|+
T Consensus 60 iNaeki~~tG~k~~~K~yy~htg~pGg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hP~~aq~ 139 (148)
T 2ftc_H 60 MNTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILK 139 (148)
T ss_pred EeceeeEeccchHhhheeeeeeCCcCCceeccHHHHhhcCHHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCChHHhC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcccc
Q psy6264 81 NVSSQIRQL 89 (120)
Q Consensus 81 ~~~~~~~qv 89 (120)
|++.+|+|+
T Consensus 140 p~~~~i~~~ 148 (148)
T 2ftc_H 140 NLVEELPQP 148 (148)
T ss_pred CeeeccCCC
Confidence 999988875
No 2
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=3.5e-37 Score=225.16 Aligned_cols=85 Identities=24% Similarity=0.453 Sum_probs=83.0
Q ss_pred CccceeEeeCccccceEEEEecCCCCCccccChhhhhhcChHHHHHHHHHhcCCCChhHHHHhccccccCCCCCChhhhc
Q psy6264 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLK 80 (120)
Q Consensus 1 vNaeki~itG~k~~~K~y~~htgypGglk~~~~~~~~~r~P~~il~~AVrgMLPkn~lgr~~l~rLkvy~G~~hP~~~~~ 80 (120)
||||+|+|||+||++|.||+|||||||+++.+++++++++|++||++||+||||||++|+.+|+||+||+|++|||++|+
T Consensus 55 iNaeki~~tG~k~~~K~yy~htgypGglk~~~~~~~~~r~P~~ii~~aVrGMLPk~~lgr~~l~rLkVy~G~~hph~aq~ 134 (140)
T 3v2d_N 55 VNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQR 134 (140)
T ss_dssp ECGGGCBCCTTHHHHCEEEEECSSTTCEEEEEHHHHHHHCTHHHHHHHHHHTSCSSHHHHHHHHTEEECSSSCCSCGGGC
T ss_pred EeCcceEccCchhhheeeEEecccCCcceeccHHHhhhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCcccCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhh
Q psy6264 81 NVSSQ 85 (120)
Q Consensus 81 ~~~~~ 85 (120)
|..++
T Consensus 135 p~~~~ 139 (140)
T 3v2d_N 135 PEKLE 139 (140)
T ss_dssp CEEEC
T ss_pred CeecC
Confidence 98764
No 3
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=7.7e-37 Score=223.82 Aligned_cols=85 Identities=21% Similarity=0.382 Sum_probs=82.9
Q ss_pred CccceeEeeCccccceEEEEecCCCCCccccChhhhhhcChHHHHHHHHHhcCCCChhHHHHhccccccCCCCCChhhhc
Q psy6264 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLK 80 (120)
Q Consensus 1 vNaeki~itG~k~~~K~y~~htgypGglk~~~~~~~~~r~P~~il~~AVrgMLPkn~lgr~~l~rLkvy~G~~hP~~~~~ 80 (120)
||||+|+|||+||++|.||+|||||||+++.+++++++++|++||++||+||||||.+|+.+|+||+||+|++|||++|+
T Consensus 57 iNaeki~~tG~k~~~K~yy~htgypGg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hph~aq~ 136 (142)
T 3r8s_J 57 LNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQ 136 (142)
T ss_dssp ECGGGCBCCTTHHHHCBCCEECSSTTCEECCBHHHHHHHCSHHHHHHHHHHHSCSSHHHHHHHTTEEECSSSCCSCGGGC
T ss_pred EeCcccCccCchhhceEEEEecCcCCCccccCHHHHHhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcccCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhh
Q psy6264 81 NVSSQ 85 (120)
Q Consensus 81 ~~~~~ 85 (120)
+..++
T Consensus 137 p~~l~ 141 (142)
T 3r8s_J 137 PQVLD 141 (142)
T ss_dssp CEECC
T ss_pred CeecC
Confidence 98764
No 4
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=2.3e-36 Score=225.32 Aligned_cols=85 Identities=24% Similarity=0.453 Sum_probs=82.6
Q ss_pred CccceeEeeCccccceEEEEecCCCCCccccChhhhhhcChHHHHHHHHHhcCCCChhHHHHhccccccCCCCCChhhhc
Q psy6264 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLK 80 (120)
Q Consensus 1 vNaeki~itG~k~~~K~y~~htgypGglk~~~~~~~~~r~P~~il~~AVrgMLPkn~lgr~~l~rLkvy~G~~hP~~~~~ 80 (120)
||||+|+|||+||++|.||+|||||||+++.+++++++++|++||++||+||||||.+|+.+|+||+||+|++|||++|+
T Consensus 78 INaekI~iTG~K~~~K~yy~htgypGglk~~t~~~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVY~G~~hPh~aQ~ 157 (163)
T 3f1f_N 78 VNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQR 157 (163)
T ss_dssp CCGGGCBCSTTHHHHCEECCBCSSTTCBCCEEHHHHHHSSCHHHHHHHHHTTSCSSHHHHHHHHTCEECSSSCCCCCSCC
T ss_pred EeCcccccCCchhhheeeEEecCcCCcceeeehHHhhhcCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcccCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhh
Q psy6264 81 NVSSQ 85 (120)
Q Consensus 81 ~~~~~ 85 (120)
|..++
T Consensus 158 P~~l~ 162 (163)
T 3f1f_N 158 PEKLE 162 (163)
T ss_dssp CBCC-
T ss_pred CeecC
Confidence 98764
No 5
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=6.2e-36 Score=225.00 Aligned_cols=89 Identities=25% Similarity=0.375 Sum_probs=86.5
Q ss_pred CccceeEeeCccccceEEEEecCCCCCccccChhhhhhcChHHHHHHHHHhcCCCChhHHHHhccccccCCCCCChhhhc
Q psy6264 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLK 80 (120)
Q Consensus 1 vNaeki~itG~k~~~K~y~~htgypGglk~~~~~~~~~r~P~~il~~AVrgMLPkn~lgr~~l~rLkvy~G~~hP~~~~~ 80 (120)
||||+|+|||+||++|.||+|||||||+++.+++++++++|++||++||+||||||++|+++|+||+||+|++|||++|+
T Consensus 83 INAeki~lTG~K~~~K~yy~htgypGGlk~~~~~~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVy~G~~hph~aqk 162 (174)
T 2zjr_G 83 INAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQK 162 (174)
T ss_dssp ECCTTCBCSSCSSSSCEEEECCSSCSSCCEEEESTTTTSCHHHHHHHHHGGGSCCSHHHHHHHTTCEECSCSTGGGGSCC
T ss_pred EeCeeeEeccchhhceEEEEecCcCCCcccccHHHHhhcChHHHHHHHHHhcCCCChhHHHHHhCeEEECCCCCChhccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcccc
Q psy6264 81 NVSSQIRQL 89 (120)
Q Consensus 81 ~~~~~~~qv 89 (120)
++..++.++
T Consensus 163 p~~l~~~~~ 171 (174)
T 2zjr_G 163 PQVLKTQPL 171 (174)
T ss_dssp SCCCCCCCC
T ss_pred CeEEecccc
Confidence 999887665
No 6
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.1e-34 Score=227.63 Aligned_cols=90 Identities=26% Similarity=0.433 Sum_probs=80.5
Q ss_pred CccceeEeeCccccceEEEEecCCCCCccccChhhhhhcChHHHHHHHHHhcCCCChhHHHHhccccccCCCCCChhhhc
Q psy6264 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLK 80 (120)
Q Consensus 1 vNaeki~itG~k~~~K~y~~htgypGglk~~~~~~~~~r~P~~il~~AVrgMLPkn~lgr~~l~rLkvy~G~~hP~~~~~ 80 (120)
||||+|+|||+||++|.||+|||||||+++.+++++++++|++||++||+||||||++|+.+|+||+||+|.+|||++|+
T Consensus 156 INAeKI~lTG~K~~~K~Y~rHsgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPkn~lGr~~lkrLkVY~G~~HPh~aQk 235 (250)
T 3bbo_L 156 VNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQ 235 (250)
T ss_dssp SCCSSCCCCSGGGGTCCCBCCCSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCSSSSHHHHHTTCCCCSSSCCSCTTSC
T ss_pred EecceEEecCChhhceEEEEecCcCCCcccccHHHhhhcChHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCCHHHcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhccccC
Q psy6264 81 NVSSQIRQLR 90 (120)
Q Consensus 81 ~~~~~~~qv~ 90 (120)
+++.++.+.+
T Consensus 236 p~~l~ia~k~ 245 (250)
T 3bbo_L 236 PIDLPLRDKR 245 (250)
T ss_dssp C---------
T ss_pred Ceeechhhhe
Confidence 9998877655
No 7
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=4.8e-35 Score=214.28 Aligned_cols=103 Identities=9% Similarity=0.015 Sum_probs=79.8
Q ss_pred CccceeEeeCccccceEEEEecCCCCCccc-cChhhhhhcChHHHHHHHHHhcCC-CChhHHHHhccccccCCCCCChhh
Q psy6264 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSW-TLAWQLHEIDPTLVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVPEDL 78 (120)
Q Consensus 1 vNaeki~itG~k~~~K~y~~htgypGglk~-~~~~~~~~r~P~~il~~AVrgMLP-kn~lgr~~l~rLkvy~G~~hP~~~ 78 (120)
||||+|+|||+|+++|.||+|||||||+++ .+ +++++++|++||++||+|||| ||++|+++|+||+||+|++|||+.
T Consensus 31 iNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~-~~~~~r~P~~ii~~aVrGMLP~k~~lgr~~l~rLkVy~G~~hp~~a 109 (142)
T 1j3a_A 31 VNAEKAVITGNREVIFSKYKQRTGLRTLTNPRR-GPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQD 109 (142)
T ss_dssp ECGGGCEEESCHHHHHHHHHHHC--------------CCCSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTT
T ss_pred EeCeeeEecccHHhheeeeeecCCCCCCcCCcc-CcccccCHHHHHHHHHHhhccCCCHHHHHHHhCcEEeCCCCCCccc
Confidence 799999999999999999999999999887 67 999999999999999999999 999999999999999999999999
Q ss_pred hccchhhccccCCcccccccCCHHHHh
Q psy6264 79 LKNVSSQIRQLRPVPRTLASYSDKEVD 105 (120)
Q Consensus 79 ~~~~~~~~~qv~~vpk~~~~~~~~e~~ 105 (120)
|++++.+.....+.+ .....|-+|++
T Consensus 110 qkp~~~~~a~~~~~~-~~k~~~lg~ls 135 (142)
T 1j3a_A 110 KQLETIVEAHVSRLS-RPKYVTVGEVA 135 (142)
T ss_dssp SCCBCCGGGBGGGSS-SCCEEEHHHHH
T ss_pred cCcEeccHHHhhccC-CCCeEEHHHHH
Confidence 999987665543232 33444666665
No 8
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=99.97 E-value=5.8e-33 Score=212.70 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=81.5
Q ss_pred CccceeEeeCccccceEEEEecCCCCCccccChhhhhhcChHHHHHHHHHhcCC-CChhHHHHhccccccCCCCCChhhh
Q psy6264 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVPEDLL 79 (120)
Q Consensus 1 vNaeki~itG~k~~~K~y~~htgypGglk~~~~~~~~~r~P~~il~~AVrgMLP-kn~lgr~~l~rLkvy~G~~hP~~~~ 79 (120)
||||+|.|||+|+++|.||+|||||||+++++++++++++|++||++||+|||| ||++|+.+|+||+||+|++|||+.|
T Consensus 36 VNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~il~~aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~aq 115 (199)
T 4b6a_O 36 VRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKK 115 (199)
T ss_dssp ECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSCCCCCSHHHHHHHHHHTTSCTTSHHHHHHHHTEEECSSCCSGGGGS
T ss_pred EEchheEEeCcHHHHHHHhhccccccccccCCHHHHhhcCcHHHHHHHHhccCCCCChhhhHHHhccEEeCCCCCCcccC
Confidence 799999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred ccch
Q psy6264 80 KNVS 83 (120)
Q Consensus 80 ~~~~ 83 (120)
++++
T Consensus 116 k~~v 119 (199)
T 4b6a_O 116 KRVV 119 (199)
T ss_dssp CCBB
T ss_pred CCEe
Confidence 9986
No 9
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=99.96 E-value=1.2e-31 Score=196.91 Aligned_cols=97 Identities=11% Similarity=0.095 Sum_probs=84.0
Q ss_pred CccceeEeeCccccceEEEEecCCCCCccccChhhhhhcChHHHHHHHHHhcCC-CChhHHHHhccccccCCCCCChhhh
Q psy6264 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVPEDLL 79 (120)
Q Consensus 1 vNaeki~itG~k~~~K~y~~htgypGglk~~~~~~~~~r~P~~il~~AVrgMLP-kn~lgr~~l~rLkvy~G~~hP~~~~ 79 (120)
||||+|+|||+|+++|.||+||||||| +++++++++|++||++||+|||| ||++|+++|+||+||+|++|| |
T Consensus 39 iNaeki~iTG~k~~~K~yy~htg~~g~----~~~~~~~r~P~~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~ 111 (145)
T 1vq8_J 39 VNAERAVITGREEQIVEKYEKRVDIGN----DNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD---E 111 (145)
T ss_dssp ECGGGCEEESCHHHHHHHHHHHHHCCC----SSCCCCCCSHHHHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---S
T ss_pred EeCEeeEecchhhhheeeeEEeCCCCC----CHHHHhhcChHHHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---C
Confidence 799999999999999999999999998 78999999999999999999999 999999999999999999999 7
Q ss_pred ccchhhccccCCcccccccCCHHHHh
Q psy6264 80 KNVSSQIRQLRPVPRTLASYSDKEVD 105 (120)
Q Consensus 80 ~~~~~~~~qv~~vpk~~~~~~~~e~~ 105 (120)
+++..+.....+.+ .-...|-+|++
T Consensus 112 k~~vv~~a~~~~l~-~~k~~~lg~ls 136 (145)
T 1vq8_J 112 DGEVLDGTSLDRLS-NIKFVTLGEIS 136 (145)
T ss_dssp CCBCCTTCBCCTTS-CCSEEEHHHHH
T ss_pred CceeeehhhhhccC-CCCeEEHHHHH
Confidence 77776655543232 33444666665
No 10
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.95 E-value=1.7e-29 Score=190.67 Aligned_cols=106 Identities=13% Similarity=0.119 Sum_probs=83.9
Q ss_pred CccceeEeeCccccceEEEEecCCCCCccccChhhhhhcChHHHHHHHHHhcCC-CChhHHHHhccccccCCCCCChhhh
Q psy6264 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVPEDLL 79 (120)
Q Consensus 1 vNaeki~itG~k~~~K~y~~htgypGglk~~~~~~~~~r~P~~il~~AVrgMLP-kn~lgr~~l~rLkvy~G~~hP~~~~ 79 (120)
||||+|.|||+||++|.||+|....++..+.+.+++++++|++||++||+|||| ||++|+.+|+||+||+|++|||+.|
T Consensus 30 INaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r~P~~Il~~AVrGMLP~K~~lGr~~l~rLkVy~G~~hp~~aq 109 (178)
T 3jyw_M 30 VRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKK 109 (178)
T ss_dssp ECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCSSTTTHHHHHTTSSSCSSSHHHHHHHHHCCEESSCCCCSCCS
T ss_pred EeCeeeEEcCchHhhEhheeccCcccccCCccccccccCCHHHHHHHHHHHHhhcccHhHHHHHhCCeeeCCCCCchhhc
Confidence 799999999999999999998433333444567999999999999999999999 6999999999999999999999999
Q ss_pred ccchhhcc-ccCCcccccccCCHHHHhc
Q psy6264 80 KNVSSQIR-QLRPVPRTLASYSDKEVDE 106 (120)
Q Consensus 80 ~~~~~~~~-qv~~vpk~~~~~~~~e~~~ 106 (120)
+++...-. .+.+....-...+-+|++.
T Consensus 110 k~~vvp~Alrv~RLkp~rKy~tLGels~ 137 (178)
T 3jyw_M 110 KRVVVPQALRVLRLKPGRKYTTLGKLST 137 (178)
T ss_dssp CSSSCCSSCCCCCSSSCSCCCCHHHHSS
T ss_pred ccccCchHhhhhccCCCCceEEcchhhh
Confidence 98863211 1122322334457777654
No 11
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=99.95 E-value=2.3e-29 Score=192.61 Aligned_cols=83 Identities=22% Similarity=0.189 Sum_probs=79.8
Q ss_pred CccceeEeeCccccceEEEEecCCCCCccccChhhhhhcChHHHHHHHHHhcCCC-ChhHHHHhccccccCCCCCChhhh
Q psy6264 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPR-SLIKFRLMARLHIFPDQEVPEDLL 79 (120)
Q Consensus 1 vNaeki~itG~k~~~K~y~~htgypGglk~~~~~~~~~r~P~~il~~AVrgMLPk-n~lgr~~l~rLkvy~G~~hP~~~~ 79 (120)
||||+|+|||+||++|.||+|+.++++..+.+++++++++|++||++||+||||+ |.+|+.+|+||+||+|++|||+.|
T Consensus 35 INAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~~~r~P~rIi~~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aq 114 (198)
T 4a17_I 35 VRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRV 114 (198)
T ss_dssp ECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCCCCCSHHHHHHHHHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTS
T ss_pred EcCccccccCchhhheeeeeeccccccCCCCccccccccCHHHHHHHHHhccCCCCChhHHHHHhCcEEecCCCCChhhc
Confidence 7999999999999999999999999999988899999999999999999999994 999999999999999999999999
Q ss_pred ccch
Q psy6264 80 KNVS 83 (120)
Q Consensus 80 ~~~~ 83 (120)
+.++
T Consensus 115 k~~v 118 (198)
T 4a17_I 115 KKQV 118 (198)
T ss_dssp CCBC
T ss_pred cccc
Confidence 9875
No 12
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.93 E-value=5.1e-28 Score=185.78 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=71.9
Q ss_pred CccceeEeeCccccceEEE-Eec-------CCCCCccccChhhhhhcChHHHHHHHHHhcCCC-ChhHHHHhccccccCC
Q psy6264 1 MNSRHIALPGYEWKKRAYF-HHT-------GYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPR-SLIKFRLMARLHIFPD 71 (120)
Q Consensus 1 vNaeki~itG~k~~~K~y~-~ht-------gypGglk~~~~~~~~~r~P~~il~~AVrgMLPk-n~lgr~~l~rLkvy~G 71 (120)
||||+|+|||+|+++|.|| +|+ ++||+ +++++|++||++||+||||+ |.+|+.+|+||+||+|
T Consensus 36 INaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~G~--------~~~r~P~~I~~~AVrGMLPkk~~lGr~~l~rLkVy~G 107 (203)
T 2zkr_j 36 VRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGP--------YDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDG 107 (203)
T ss_dssp ECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCC--------CCCCSHHHHHHHHHHHHSCTTSHHHHHHHHTEEECSC
T ss_pred EchHHeecCchHHHHHHHHHHHHhhcccCCCCCCc--------cccCChHHHHHHHHHhhCCCCChhHHHHHhCcEEeCC
Confidence 7999999999999999999 998 77776 57899999999999999998 8999999999999999
Q ss_pred CCCChhhhccchhh
Q psy6264 72 QEVPEDLLKNVSSQ 85 (120)
Q Consensus 72 ~~hP~~~~~~~~~~ 85 (120)
++|||+.|++++..
T Consensus 108 ~~hp~~aqkp~vvp 121 (203)
T 2zkr_j 108 IPPPYDKKKRMVVP 121 (203)
T ss_dssp SSCSSSSCCBCCGG
T ss_pred CCCchhhcCCcccc
Confidence 99999999998653
No 13
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=99.93 E-value=6.7e-28 Score=185.46 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=72.5
Q ss_pred CccceeEeeCccccceEEEEecCCCCCcccc--ChhhhhhcChHHHHHHHHHhcCCC-ChhHHHHhccccccCCCCCChh
Q psy6264 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWT--LAWQLHEIDPTLVMKKAVRWELPR-SLIKFRLMARLHIFPDQEVPED 77 (120)
Q Consensus 1 vNaeki~itG~k~~~K~y~~htgypGglk~~--~~~~~~~r~P~~il~~AVrgMLPk-n~lgr~~l~rLkvy~G~~hP~~ 77 (120)
||||+|+|||+||++|.||+| |.+..... +++++++++|++||++||+||||+ |.+|+.+|+||+||+|++|||+
T Consensus 41 INAekI~iTG~K~~~K~yy~~--~l~~~~~~np~~~~~~~r~P~~Il~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~ 118 (206)
T 3iz5_K 41 VRCEEICMSGGLVRQKMKYLR--FLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYD 118 (206)
T ss_dssp ECGGGCEEESCHHHHHHHHHH--HHHHTTCSCSSSCSCCCCSHHHHHHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCC
T ss_pred EcCcccCcCCchHhhhhheee--ecceeecCCCcccchhhcCHHHHHHHHHhccCCCCChhHHHHHhCCEEeCCCCCChh
Confidence 799999999999999999987 55443332 569999999999999999999996 9999999999999999999999
Q ss_pred hhccch
Q psy6264 78 LLKNVS 83 (120)
Q Consensus 78 ~~~~~~ 83 (120)
.|+.++
T Consensus 119 aqk~~v 124 (206)
T 3iz5_K 119 RTKRMV 124 (206)
T ss_dssp SCCBCC
T ss_pred hccccc
Confidence 999665
No 14
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.22 E-value=15 Score=21.57 Aligned_cols=29 Identities=34% Similarity=0.614 Sum_probs=22.5
Q ss_pred CCcccccccCCHHHHhc-CC---CCCCCCCCcc
Q psy6264 90 RPVPRTLASYSDKEVDE-FP---KINDFPKDYI 118 (120)
Q Consensus 90 ~~vpk~~~~~~~~e~~~-fp---~~~~~~~~~~ 118 (120)
+++..+=.-+|+||+|. +| ++.++|.+|.
T Consensus 13 ~ei~~rnrpltDEeLD~~LP~GY~il~pP~~Y~ 45 (47)
T 2fho_A 13 REIDERNRPLSDEELDAMFPEGYKVLPPPAGYV 45 (47)
T ss_dssp CCCCCCCCCSCTTHHHHHSCTTEEECCCCTTCC
T ss_pred hccccccCCCCHHHHHHhCCCCCeecCCCCCCC
Confidence 45566666789999986 67 8888998885
No 15
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.13 E-value=18 Score=23.05 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=17.0
Q ss_pred ccCCHHHHhcCCCCCCCCCC
Q psy6264 97 ASYSDKEVDEFPKINDFPKD 116 (120)
Q Consensus 97 ~~~~~~e~~~fp~~~~~~~~ 116 (120)
+++|+||+..|-+|-.-|+.
T Consensus 48 ~~LT~eEi~~FaRLdIDP~T 67 (71)
T 2eo2_A 48 STLTEEEVRKFARLNIDPAT 67 (71)
T ss_dssp TTCCHHHHHHHHHTCCCSTT
T ss_pred ccCCHHHHhhceecccCccc
Confidence 67899999999999877764
Done!