Your job contains 1 sequence.
>psy6264
MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF
RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYILK
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6264
(120 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0032720 - symbol:mRpL13 "mitochondrial ribosomal p... 383 1.9e-35 1
UNIPROTKB|Q3SYS1 - symbol:MRPL13 "39S ribosomal protein L... 310 1.0e-27 1
UNIPROTKB|F1S286 - symbol:MRPL13 "Uncharacterized protein... 306 2.8e-27 1
UNIPROTKB|K7GP19 - symbol:MRPL13 "Uncharacterized protein... 306 2.8e-27 1
UNIPROTKB|J9P023 - symbol:MRPL13 "Uncharacterized protein... 298 1.9e-26 1
UNIPROTKB|Q9BYD1 - symbol:MRPL13 "39S ribosomal protein L... 295 4.0e-26 1
ZFIN|ZDB-GENE-050522-167 - symbol:mrpl13 "mitochondrial r... 290 1.4e-25 1
MGI|MGI:2137218 - symbol:Mrpl13 "mitochondrial ribosomal ... 288 2.2e-25 1
UNIPROTKB|E2RT81 - symbol:MRPL13 "Uncharacterized protein... 284 5.9e-25 1
UNIPROTKB|E5RJI7 - symbol:MRPL13 "39S ribosomal protein L... 282 9.7e-25 1
RGD|1359587 - symbol:Mrpl13 "mitochondrial ribosomal prot... 281 1.2e-24 1
UNIPROTKB|F1LYZ7 - symbol:F1LYZ7 "Uncharacterized protein... 192 3.3e-15 1
WB|WBGene00008769 - symbol:mrpl-13 species:6239 "Caenorha... 186 1.4e-14 1
UNIPROTKB|E1BWS7 - symbol:MRPL13 "Uncharacterized protein... 165 2.4e-12 1
TIGR_CMR|GSU_2876 - symbol:GSU_2876 "ribosomal protein L1... 123 6.8e-08 1
DICTYBASE|DDB_G0274959 - symbol:mrpl13 "ribosomal protein... 117 6.0e-07 1
TIGR_CMR|DET_0505 - symbol:DET_0505 "ribosomal protein L1... 111 1.3e-06 1
UNIPROTKB|H0YAX3 - symbol:MRPL13 "39S ribosomal protein L... 110 1.6e-06 1
UNIPROTKB|P66065 - symbol:rplM "50S ribosomal protein L13... 109 2.1e-06 1
TIGR_CMR|CHY_2274 - symbol:CHY_2274 "ribosomal protein L1... 100 1.9e-05 1
TIGR_CMR|BA_0143 - symbol:BA_0143 "ribosomal protein L13"... 97 3.9e-05 1
TIGR_CMR|SO_3940 - symbol:SO_3940 "ribosomal protein L13"... 96 5.0e-05 1
TAIR|locus:2203010 - symbol:emb1473 "embryo defective 147... 100 5.9e-05 1
TIGR_CMR|CPS_4443 - symbol:CPS_4443 "ribosomal protein L1... 91 0.00017 1
TIGR_CMR|NSE_0840 - symbol:NSE_0840 "ribosomal protein L1... 90 0.00021 1
TIGR_CMR|ECH_1019 - symbol:ECH_1019 "ribosomal protein L1... 88 0.00038 1
UNIPROTKB|P0AA10 - symbol:rplM species:83333 "Escherichia... 87 0.00064 1
>FB|FBgn0032720 [details] [associations]
symbol:mRpL13 "mitochondrial ribosomal protein L13"
species:7227 "Drosophila melanogaster" [GO:0006412 "translation"
evidence=ISS;NAS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS;NAS] [GO:0005762 "mitochondrial large ribosomal
subunit" evidence=ISS;NAS] InterPro:IPR005822 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 EMBL:AE014134
GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
CTD:28998 GeneTree:ENSGT00390000001515 OMA:VQQWATF EMBL:BT053702
RefSeq:NP_523598.2 UniGene:Dm.2753 ProteinModelPortal:Q9VJ38
SMR:Q9VJ38 STRING:Q9VJ38 PaxDb:Q9VJ38 EnsemblMetazoa:FBtr0089318
GeneID:35145 KEGG:dme:Dmel_CG10603 FlyBase:FBgn0032720
InParanoid:Q9VJ38 OrthoDB:EOG4WM39Z PhylomeDB:Q9VJ38
GenomeRNAi:35145 NextBio:792084 GermOnline:CG10603 Uniprot:Q9VJ38
Length = 178
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 72/121 (59%), Positives = 92/121 (76%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+R IALPG EW KR YFHHTGYPGG SWTLAWQLHE DPT+VMKKAV + +L +
Sbjct: 59 INTREIALPGDEWVKRVYFHHTGYPGGASWTLAWQLHEKDPTMVMKKAVYNSMRGNLQRR 118
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE-VDEFPKINDFPKDYIL 119
M RLH+F D +VPE++L+NV++QIR R +P+ L + DKE ++ FP I D+PKDYIL
Sbjct: 119 HTMQRLHLFADDQVPEEILQNVTNQIRTPRSIPQRL-DHIDKETLENFPNIMDYPKDYIL 177
Query: 120 K 120
+
Sbjct: 178 R 178
>UNIPROTKB|Q3SYS1 [details] [associations]
symbol:MRPL13 "39S ribosomal protein L13, mitochondrial"
species:9913 "Bos taurus" [GO:0005761 "mitochondrial ribosome"
evidence=ISS] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0003735 GO:GO:0005761 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 HOGENOM:HOG000225288 PDB:2FTC PDBsum:2FTC
EMBL:BC103423 IPI:IPI00707300 RefSeq:NP_001029977.1
UniGene:Bt.49122 ProteinModelPortal:Q3SYS1 STRING:Q3SYS1
PRIDE:Q3SYS1 Ensembl:ENSBTAT00000008903 GeneID:617901
KEGG:bta:617901 CTD:28998 GeneTree:ENSGT00390000001515
HOVERGEN:HBG036111 InParanoid:Q3SYS1 OMA:VQQWATF OrthoDB:EOG4Z8XXJ
EvolutionaryTrace:Q3SYS1 NextBio:20900892 Uniprot:Q3SYS1
Length = 178
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 55/119 (46%), Positives = 82/119 (68%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
MN+RHIA G +W+++ Y HTGYPGG A QLH DP ++K A+ LP++L +
Sbjct: 60 MNTRHIAFSGNKWEQKVYSSHTGYPGGFKQVTAAQLHRKDPVAIVKLAIYGMLPKNLHRR 119
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYIL 119
LM RLH+FPD+++PED+LKN++ ++ Q R VPR L Y+ +E++ FP++ P+DY L
Sbjct: 120 TLMQRLHLFPDEDIPEDILKNLTEELPQPRKVPRRLDEYTQEEIEAFPRVWSPPEDYRL 178
>UNIPROTKB|F1S286 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005761 "mitochondrial ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412
GO:GO:0003735 GO:GO:0005761 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 CTD:28998
GeneTree:ENSGT00390000001515 OMA:VQQWATF EMBL:CU302271
EMBL:CU468161 RefSeq:NP_001230344.1 UniGene:Ssc.20756
Ensembl:ENSSSCT00000006579 GeneID:100153348 KEGG:ssc:100153348
Uniprot:F1S286
Length = 178
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 54/119 (45%), Positives = 82/119 (68%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
MN+RHIA G +W+++ Y HTGYPGG A QLH+ DP ++K A+ LP++L +
Sbjct: 60 MNTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHQKDPVAIVKLAIYGMLPKNLHRR 119
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYIL 119
+M RLH+FPD+++PED+LKN+ ++ Q R VPR L Y+ +E++ FP++ P+DY L
Sbjct: 120 TMMQRLHLFPDEDIPEDILKNLVEELPQPRKVPRRLDEYTQEEIEAFPRVWSPPEDYRL 178
>UNIPROTKB|K7GP19 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 TIGRFAMs:TIGR01066
GeneTree:ENSGT00390000001515 EMBL:CU302271 EMBL:CU468161
Ensembl:ENSSSCT00000034332 Uniprot:K7GP19
Length = 154
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 54/119 (45%), Positives = 82/119 (68%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
MN+RHIA G +W+++ Y HTGYPGG A QLH+ DP ++K A+ LP++L +
Sbjct: 36 MNTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHQKDPVAIVKLAIYGMLPKNLHRR 95
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYIL 119
+M RLH+FPD+++PED+LKN+ ++ Q R VPR L Y+ +E++ FP++ P+DY L
Sbjct: 96 TMMQRLHLFPDEDIPEDILKNLVEELPQPRKVPRRLDEYTQEEIEAFPRVWSPPEDYRL 154
>UNIPROTKB|J9P023 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
TIGRFAMs:TIGR01066 GeneTree:ENSGT00390000001515 EMBL:AAEX03008768
Ensembl:ENSCAFT00000045486 Uniprot:J9P023
Length = 178
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 54/119 (45%), Positives = 80/119 (67%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
MN+RHIA G +W+++ Y HTGYPGG A QLH+ DP ++K A+ LP++L +
Sbjct: 60 MNTRHIAFSGNKWEQKVYSSHTGYPGGFKQVTAAQLHQKDPVAIVKLAIYGMLPKNLHRR 119
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYIL 119
LM RLH+FPD+++PED+ KN+ ++ Q R VPR L Y+ +E++ FP + P+DY L
Sbjct: 120 TLMQRLHLFPDEDIPEDIRKNLVEELPQPRKVPRRLDEYTQEEIEAFPIVWSPPEDYRL 178
>UNIPROTKB|Q9BYD1 [details] [associations]
symbol:MRPL13 "39S ribosomal protein L13, mitochondrial"
species:9606 "Homo sapiens" [GO:0006412 "translation" evidence=NAS]
[GO:0003735 "structural constituent of ribosome" evidence=NAS]
[GO:0005762 "mitochondrial large ribosomal subunit"
evidence=IDA;NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005761 "mitochondrial ribosome" evidence=IDA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:AB049640 EMBL:CH471060 GO:GO:0006412 GO:GO:0005762
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
CTD:28998 HOVERGEN:HBG036111 OMA:VQQWATF OrthoDB:EOG4Z8XXJ
EMBL:AF112214 EMBL:AK311924 EMBL:BC009190 EMBL:BC021744
IPI:IPI00022403 RefSeq:NP_054797.2 UniGene:Hs.333823
ProteinModelPortal:Q9BYD1 SMR:Q9BYD1 IntAct:Q9BYD1 STRING:Q9BYD1
PhosphoSite:Q9BYD1 DMDM:22257023 PaxDb:Q9BYD1 PRIDE:Q9BYD1
DNASU:28998 Ensembl:ENST00000306185 GeneID:28998 KEGG:hsa:28998
UCSC:uc003ypa.3 GeneCards:GC08M121477 HGNC:HGNC:14278 MIM:610200
neXtProt:NX_Q9BYD1 PharmGKB:PA30942 InParanoid:Q9BYD1
PhylomeDB:Q9BYD1 GenomeRNAi:28998 NextBio:51932 ArrayExpress:Q9BYD1
Bgee:Q9BYD1 CleanEx:HS_MRPL13 Genevestigator:Q9BYD1
GermOnline:ENSG00000172172 Uniprot:Q9BYD1
Length = 178
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 53/119 (44%), Positives = 80/119 (67%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
MN+RHIA G +W+++ Y HTGYPGG A QLH DP ++K A+ LP++L +
Sbjct: 60 MNTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRR 119
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYIL 119
+M RLH+FPD+ +PED+LKN+ ++ Q R +P+ L Y+ +E+D FP++ P+DY L
Sbjct: 120 TMMERLHLFPDEYIPEDILKNLVEELPQPRKIPKRLDEYTQEEIDAFPRLWTPPEDYRL 178
>ZFIN|ZDB-GENE-050522-167 [details] [associations]
symbol:mrpl13 "mitochondrial ribosomal protein L13"
species:7955 "Danio rerio" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
ZFIN:ZDB-GENE-050522-167 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
CTD:28998 HOVERGEN:HBG036111 OrthoDB:EOG4Z8XXJ EMBL:BC095074
IPI:IPI00607407 RefSeq:NP_001018370.1 UniGene:Dr.82561
ProteinModelPortal:Q504D1 STRING:Q504D1 GeneID:553555
KEGG:dre:553555 InParanoid:Q504D1 NextBio:20880297 Uniprot:Q504D1
Length = 179
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 53/120 (44%), Positives = 80/120 (66%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
MN++HIA G +W+++ Y HTG+PG A QLH D T ++K AV LPR+L +
Sbjct: 60 MNTKHIAFSGNKWEQKVYSSHTGHPGSFKQVTAAQLHRKDSTAIIKLAVYGMLPRNLTRR 119
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYILK 120
+M RLH+FPD +PED+LKN++ ++ Q R +PR L+ Y+ +E D FP++ P+DY +K
Sbjct: 120 TMMQRLHLFPDDVLPEDILKNLTEELPQPREIPRKLSEYTQEERDAFPRLWTPPEDYRMK 179
>MGI|MGI:2137218 [details] [associations]
symbol:Mrpl13 "mitochondrial ribosomal protein L13"
species:10090 "Mus musculus" [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005761 "mitochondrial ribosome" evidence=ISO] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISO] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
MGI:MGI:2137218 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
CTD:28998 GeneTree:ENSGT00390000001515 HOVERGEN:HBG036111
OMA:VQQWATF OrthoDB:EOG4Z8XXJ EMBL:AB049641 EMBL:AK003283
EMBL:BC060968 IPI:IPI00134011 RefSeq:NP_081035.1 UniGene:Mm.236795
ProteinModelPortal:Q9D1P0 SMR:Q9D1P0 STRING:Q9D1P0
PhosphoSite:Q9D1P0 PaxDb:Q9D1P0 PRIDE:Q9D1P0
Ensembl:ENSMUST00000172387 GeneID:68537 KEGG:mmu:68537
UCSC:uc007vsf.1 InParanoid:Q9D1P0 NextBio:327412 Bgee:Q9D1P0
CleanEx:MM_MRPL13 Genevestigator:Q9D1P0
GermOnline:ENSMUSG00000022370 Uniprot:Q9D1P0
Length = 178
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 50/117 (42%), Positives = 79/117 (67%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+RHIA G +W+++ Y HTGYPGG A QLH DP ++K A+ LP++L +
Sbjct: 60 INTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHRKDPVAIVKLAIYGMLPKNLHRR 119
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDY 117
+M RLH+FPD+++PED+LKN+ ++ Q R VP+ L Y+ +E++ FP++ P D+
Sbjct: 120 TMMQRLHLFPDEDIPEDILKNLVEELPQPRRVPKRLDEYTQEEIEAFPRVWTPPDDF 176
>UNIPROTKB|E2RT81 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
TIGRFAMs:TIGR01066 GeneTree:ENSGT00390000001515 OMA:VQQWATF
EMBL:AAEX03008768 Ensembl:ENSCAFT00000001460 Uniprot:E2RT81
Length = 179
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 50/108 (46%), Positives = 74/108 (68%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
MN+RHIA G +W+++ Y HTGYPGG A QLH+ DP ++K A+ LP++L +
Sbjct: 60 MNTRHIAFSGNKWEQKVYSSHTGYPGGFKQVTAAQLHQKDPVAIVKLAIYGMLPKNLHRR 119
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFP 108
LM RLH+FPD+++PED+ KN+ ++ Q R VPR L Y+ +E++ FP
Sbjct: 120 TLMQRLHLFPDEDIPEDIRKNLVEELPQPRKVPRRLDEYTQEEIEAFP 167
>UNIPROTKB|E5RJI7 [details] [associations]
symbol:MRPL13 "39S ribosomal protein L13, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0005739 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AC107877 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 TIGRFAMs:TIGR01066
HGNC:HGNC:14278 IPI:IPI01011492 ProteinModelPortal:E5RJI7
SMR:E5RJI7 Ensembl:ENST00000518918 ArrayExpress:E5RJI7 Bgee:E5RJI7
Uniprot:E5RJI7
Length = 148
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 49/110 (44%), Positives = 75/110 (68%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
MN+RHIA G +W+++ Y HTGYPGG A QLH DP ++K A+ LP++L +
Sbjct: 36 MNTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRR 95
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKI 110
+M RLH+FPD+ +PED+LKN+ ++ Q R +P+ L Y+ +E+D FP++
Sbjct: 96 TMMERLHLFPDEYIPEDILKNLVEELPQPRKIPKRLDEYTQEEIDAFPRL 145
>RGD|1359587 [details] [associations]
symbol:Mrpl13 "mitochondrial ribosomal protein L13"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005761 "mitochondrial ribosome"
evidence=IEA;ISO] [GO:0005762 "mitochondrial large ribosomal
subunit" evidence=ISO] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 RGD:1359587 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CH473950 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 HOGENOM:HOG000225288 CTD:28998
GeneTree:ENSGT00390000001515 HOVERGEN:HBG036111 OMA:VQQWATF
OrthoDB:EOG4Z8XXJ EMBL:BC084710 IPI:IPI00366411
RefSeq:NP_001006986.1 UniGene:Rn.107776 STRING:Q5XFW4
Ensembl:ENSRNOT00000005815 GeneID:299938 KEGG:rno:299938
UCSC:RGD:1359587 InParanoid:Q5XFW4 NextBio:646013
Genevestigator:Q5XFW4 Uniprot:Q5XFW4
Length = 178
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 50/117 (42%), Positives = 78/117 (66%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+RHIA G +W+++ Y HTGYPGG A QLH DP ++K A LP++L +
Sbjct: 60 INTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLKDPVAIVKLATYGMLPKNLHRR 119
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDY 117
+M RLH+FPD+++PED+LKN+ ++ Q R VP+ L Y+ +E++ FP++ P D+
Sbjct: 120 TMMQRLHLFPDEDIPEDILKNLVEELPQPRRVPKRLDEYTQEEIEAFPRVWAPPDDF 176
>UNIPROTKB|F1LYZ7 [details] [associations]
symbol:F1LYZ7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR005822
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 IPI:IPI00769027 Ensembl:ENSRNOT00000061678
Uniprot:F1LYZ7
Length = 172
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 40/110 (36%), Positives = 63/110 (57%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+++RHIA G +W+ + H GYPGG A Q H DP ++K A LP L +
Sbjct: 53 ISTRHIAFSGNKWEGKVCSSHPGYPGGFRQAAAAQRHLKDPVAMVKLATCDTLPEILHRR 112
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKI 110
M RLH+FPD+++PE++LK++ ++ Q R VP+ S K+ P++
Sbjct: 113 TRMQRLHLFPDEDIPEEILKDLVEELPQPRRVPKGWTSTLKKKQRFSPRV 162
>WB|WBGene00008769 [details] [associations]
symbol:mrpl-13 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR005822 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 GO:GO:0009792 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:Z71259 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
HOGENOM:HOG000225288 GeneTree:ENSGT00390000001515 OMA:VQQWATF
RefSeq:NP_492067.1 ProteinModelPortal:Q95QL2 SMR:Q95QL2
STRING:Q95QL2 PaxDb:Q95QL2 EnsemblMetazoa:F13G3.11.1
EnsemblMetazoa:F13G3.11.2 GeneID:172479 KEGG:cel:CELE_F13G3.11
UCSC:F13G3.11 CTD:172479 WormBase:F13G3.11 InParanoid:Q95QL2
NextBio:875685 Uniprot:Q95QL2
Length = 205
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 37/118 (31%), Positives = 67/118 (56%)
Query: 2 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKFR 61
N + IA+ ++WK Y + YP + AWQ+H+ D + +V L +L++ R
Sbjct: 66 NCKDIAMHAFDWKHTIYKFNMEYPKSKADIPAWQIHDYDQCRIAFLSVYRSLGNNLLRRR 125
Query: 62 LMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYIL 119
+ RLH+FPD+E+ E + KN+ SQ+RQ++ V + Y+ +E FP++ F +++
Sbjct: 126 HIQRLHLFPDEEMAEFVRKNIGSQLRQVQGVVKRSDEYTAEERANFPRVVKFADKHVV 183
>UNIPROTKB|E1BWS7 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005761
"mitochondrial ribosome" evidence=IEA] InterPro:IPR005822
GO:GO:0006412 GO:GO:0003735 GO:GO:0005761 PANTHER:PTHR11545
GeneTree:ENSGT00390000001515 EMBL:AADN02022555 EMBL:AADN02022556
IPI:IPI00590933 Ensembl:ENSGALT00000030772
Ensembl:ENSGALT00000030773 OMA:KLAVYRM Uniprot:E1BWS7
Length = 69
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 53 LPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKIND 112
LP++L++ LM RLH+FPD +PED+ KN+ +I Q R VPR L Y+ +E+ FP++
Sbjct: 2 LPKNLLRRTLMQRLHLFPDDVIPEDIEKNLLQEIPQPRVVPRRLDEYTPEEIAAFPRVWT 61
Query: 113 FPKDYILK 120
PKD+ +K
Sbjct: 62 PPKDFRMK 69
>TIGR_CMR|GSU_2876 [details] [associations]
symbol:GSU_2876 "ribosomal protein L13" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HSSP:O59300 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:NP_953918.1 ProteinModelPortal:Q748X4 SMR:Q748X4
GeneID:2688685 KEGG:gsu:GSU2876 PATRIC:22028613
HOGENOM:HOG000225288 BioCyc:GSUL243231:GH27-2865-MONOMER
Uniprot:Q748X4
Length = 143
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ + L G + + Y+HHTG+PGG+ A +L E P +++KAV+ LP++ +
Sbjct: 58 VNAAKLQLTGNKLADKMYYHHTGFPGGIKSITAGKLIEKKPEDLIRKAVKGMLPKNKLAR 117
Query: 61 RLMARLHIFPDQEVPED 77
++ +L ++ E P +
Sbjct: 118 HMLKKLKVYAGPEHPHE 134
>DICTYBASE|DDB_G0274959 [details] [associations]
symbol:mrpl13 "ribosomal protein L13, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023564 Pfam:PF00572
dictyBase:DDB_G0274959 GO:GO:0006412 EMBL:AAFI02000012
GO:GO:0005840 GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066
HAMAP:MF_01366_B RefSeq:XP_644226.1 ProteinModelPortal:Q554U7
STRING:Q554U7 EnsemblProtists:DDB0217569 GeneID:8619655
KEGG:ddi:DDB_G0274959 InParanoid:Q554U7 OMA:HIIRHAV Uniprot:Q554U7
Length = 227
Score = 117 (46.2 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 30/110 (27%), Positives = 54/110 (49%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ + G +W ++ Y H+GYPGG+ TLA + +P +++ AV +P++ KF
Sbjct: 60 LNAHKVEFTGKKWDQKMYRKHSGYPGGLKETLAKDMLVENPEHIIRHAVMGMIPKNNSKF 119
Query: 61 RLMARLHIFPDQEVPED--LLKNVSSQIR-QLRPVPRTLASYSDKEVDEF 107
L RL I+ P + SS I + P + +++DE+
Sbjct: 120 YLGKRLKIYDGIFNPHQGQITATPSSPIALNIGPFVEKQIEPTQEQIDEY 169
>TIGR_CMR|DET_0505 [details] [associations]
symbol:DET_0505 "ribosomal protein L13" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871
TIGRFAMs:TIGR01066 OMA:YTPHMDC ProtClustDB:PRK09216
HAMAP:MF_01366_B RefSeq:YP_181249.1 ProteinModelPortal:Q3Z950
STRING:Q3Z950 GeneID:3230210 KEGG:det:DET0505 PATRIC:21608079
BioCyc:DETH243164:GJNF-505-MONOMER Uniprot:Q3Z950
Length = 143
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 19/75 (25%), Positives = 44/75 (58%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N++ + + G + ++ Y+ H+G+PGG L + P V++ AV+ +PR+ +
Sbjct: 57 INAKKVTVTGNKLDQKIYYRHSGFPGGFRQEKLGDLLKTKPLFVIEHAVKGMIPRNTLGA 116
Query: 61 RLMARLHIFPDQEVP 75
+++A+L ++ +E P
Sbjct: 117 QILAKLKVYEGEEHP 131
>UNIPROTKB|H0YAX3 [details] [associations]
symbol:MRPL13 "39S ribosomal protein L13, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR005822 GO:GO:0005739 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AC107877 PANTHER:PTHR11545
HGNC:HGNC:14278 Ensembl:ENST00000521648 Bgee:H0YAX3 Uniprot:H0YAX3
Length = 47
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 74 VPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYIL 119
+PED+LKN+ ++ Q R +P+ L Y+ +E+D FP++ P+DY L
Sbjct: 2 IPEDILKNLVEELPQPRKIPKRLDEYTQEEIDAFPRLWTPPEDYRL 47
>UNIPROTKB|P66065 [details] [associations]
symbol:rplM "50S ribosomal protein L13" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0005829
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842583
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B PIR:A70977 RefSeq:NP_217960.1
RefSeq:NP_338075.1 RefSeq:YP_006516932.1 ProteinModelPortal:P66065
SMR:P66065 PhosSite:P12061578 PRIDE:P66065
EnsemblBacteria:EBMYCT00000002385 EnsemblBacteria:EBMYCT00000071846
GeneID:13317050 GeneID:887584 GeneID:926638 KEGG:mtc:MT3548
KEGG:mtu:Rv3443c KEGG:mtv:RVBD_3443c PATRIC:18129537
TubercuList:Rv3443c OMA:FEITQVA ChEMBL:CHEMBL1933 Uniprot:P66065
Length = 147
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 21/89 (23%), Positives = 49/89 (55%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +A+ G + + + + H+GYPGG+ +L + P V++KA+ LP++ +
Sbjct: 57 INADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSR 116
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQL 89
++ +L ++ E P + V +++Q+
Sbjct: 117 QIQRKLRVYAGPEHPHSAQQPVPYELKQV 145
>TIGR_CMR|CHY_2274 [details] [associations]
symbol:CHY_2274 "ribosomal protein L13" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:YP_361083.1 ProteinModelPortal:Q3A9V1 SMR:Q3A9V1
STRING:Q3A9V1 GeneID:3726760 KEGG:chy:CHY_2274 PATRIC:21277619
BioCyc:CHYD246194:GJCN-2273-MONOMER Uniprot:Q3A9V1
Length = 143
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/80 (26%), Positives = 41/80 (51%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ L G + +K+ ++ H+ YPGG+ L + +P L +KAV+ LP + +
Sbjct: 58 INAEKAVLTGKKLEKKMFYRHSRYPGGLKAIPYGILMKTNPVLAFEKAVKGMLPHNRLGR 117
Query: 61 RLMARLHIFPDQEVPEDLLK 80
+L +L ++ + P K
Sbjct: 118 KLFKKLKVYAGESHPHQAQK 137
>TIGR_CMR|BA_0143 [details] [associations]
symbol:BA_0143 "ribosomal protein L13" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 HSSP:O59300 HOGENOM:HOG000225286
KO:K02871 TIGRFAMs:TIGR01066 ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:NP_842710.1 RefSeq:YP_016748.1 RefSeq:YP_026429.1
ProteinModelPortal:Q81VP9 SMR:Q81VP9 DNASU:1086446
EnsemblBacteria:EBBACT00000011142 EnsemblBacteria:EBBACT00000017416
EnsemblBacteria:EBBACT00000024437 GeneID:1086446 GeneID:2819438
GeneID:2851608 KEGG:ban:BA_0143 KEGG:bar:GBAA_0143 KEGG:bat:BAS0143
OMA:MLPKTRL BioCyc:BANT260799:GJAJ-154-MONOMER
BioCyc:BANT261594:GJ7F-156-MONOMER Uniprot:Q81VP9
Length = 145
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/87 (22%), Positives = 44/87 (50%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ I L G + + Y+ HT +PGG+ A ++ P +++ A++ LP+ +
Sbjct: 58 INAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGR 117
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIR 87
++ +L+++ E P K ++R
Sbjct: 118 QVSKKLNVYAGAEHPHQAQKPEVYELR 144
>TIGR_CMR|SO_3940 [details] [associations]
symbol:SO_3940 "ribosomal protein L13" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL HSSP:P0AA10
RefSeq:NP_719471.1 ProteinModelPortal:Q8EAG2 SMR:Q8EAG2
GeneID:1171578 KEGG:son:SO_3940 PATRIC:23527558 Uniprot:Q8EAG2
Length = 142
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 17/73 (23%), Positives = 40/73 (54%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ + + G + + + Y+ H+G+PGG+ +L P ++++KAV+ LP+ +
Sbjct: 57 INAEKVTVTGNKAQGKTYYSHSGFPGGIKQISFEKLQAHKPEMIIEKAVKGMLPKGPLGR 116
Query: 61 RLMARLHIFPDQE 73
+ +L ++ E
Sbjct: 117 AMFRKLKVYAGAE 129
>TAIR|locus:2203010 [details] [associations]
symbol:emb1473 "embryo defective 1473" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005840 "ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PROSITE:PS00783 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006412 GO:GO:0009941
GO:GO:0005840 GO:GO:0003735 GO:GO:0009579 EMBL:AC007260
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 EMBL:X87333 EMBL:AY063105 EMBL:AF370318
IPI:IPI00520181 PIR:A96815 RefSeq:NP_177984.1 UniGene:At.20962
HSSP:O59300 ProteinModelPortal:Q9SYL9 SMR:Q9SYL9 STRING:Q9SYL9
PaxDb:Q9SYL9 PRIDE:Q9SYL9 ProMEX:Q9SYL9 EnsemblPlants:AT1G78630.1
GeneID:844199 KEGG:ath:AT1G78630 GeneFarm:82 TAIR:At1g78630
HOGENOM:HOG000225286 InParanoid:Q9SYL9 KO:K02871 OMA:HVNTDKP
PhylomeDB:Q9SYL9 ProtClustDB:CLSN2679548 Genevestigator:Q9SYL9
GermOnline:AT1G78630 TIGRFAMs:TIGR01066 Uniprot:Q9SYL9
Length = 241
Score = 100 (40.3 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +A+ G + ++ Y H+G PGG++ QL + P +++ AVR LP+ +
Sbjct: 147 VNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGR 206
Query: 61 RLMARLHIFPDQEVPEDLLKNVSSQIRQLR 90
L L ++ + P + K + IR R
Sbjct: 207 ALFNHLKVYKGPDHPHEAQKPLDLPIRDKR 236
>TIGR_CMR|CPS_4443 [details] [associations]
symbol:CPS_4443 "ribosomal protein L13" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:YP_271091.1 HSSP:P0AA10 ProteinModelPortal:Q47VT1 SMR:Q47VT1
STRING:Q47VT1 GeneID:3518471 KEGG:cps:CPS_4443 PATRIC:21471723
BioCyc:CPSY167879:GI48-4452-MONOMER Uniprot:Q47VT1
Length = 142
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ + + G + K + Y+ HT +PGG+ +L E PT V++ AV+ LP+ +
Sbjct: 57 INAEKVRVTGNKAKGKIYYSHTEFPGGLKQISFEKLIEKAPTRVLEFAVKGMLPKGPLGR 116
Query: 61 RLMARLHIFPDQE 73
+ +L ++ E
Sbjct: 117 EMFRKLKVYAGPE 129
>TIGR_CMR|NSE_0840 [details] [associations]
symbol:NSE_0840 "ribosomal protein L13" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:YP_506708.1 ProteinModelPortal:Q2GCT8 STRING:Q2GCT8
GeneID:3932168 KEGG:nse:NSE_0840 PATRIC:22681675
BioCyc:NSEN222891:GHFU-845-MONOMER Uniprot:Q2GCT8
Length = 152
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGV-SWTLAWQLHEIDPTLVMKKAVRWELPRSLIK 59
+N+ + G + + Y+ HTGYPGG+ S T A L P V+K AV+ L +
Sbjct: 57 VNASKVKFSGSKMSDKVYYRHTGYPGGIKSTTPAKILRGKKPCEVVKLAVKRMLDDGPMA 116
Query: 60 FRLMARLHIFPDQE 73
R + L+++ E
Sbjct: 117 RRRLKNLYVYAGPE 130
>TIGR_CMR|ECH_1019 [details] [associations]
symbol:ECH_1019 "ribosomal protein L13" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:YP_507805.1 ProteinModelPortal:Q2GFH8 STRING:Q2GFH8
GeneID:3927274 KEGG:ech:ECH_1019 PATRIC:20577408
BioCyc:ECHA205920:GJNR-1022-MONOMER Uniprot:Q2GFH8
Length = 156
Score = 88 (36.0 bits), Expect = 0.00038, P = 0.00038
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGV-SWTLAWQLHEIDPTLVMKKAVRWELPRSLIK 59
+N+ + G + K + Y+ HTGYPGG+ S T A P ++ AVR L +
Sbjct: 59 INAEKVHFTGSKLKNKVYYRHTGYPGGLKSCTPADLFLNKHPERIINMAVRRMLSTGPMA 118
Query: 60 FRLMARLHIFPDQE 73
R + L+++ E
Sbjct: 119 RRRLKNLYVYSGPE 132
>UNIPROTKB|P0AA10 [details] [associations]
symbol:rplM species:83333 "Escherichia coli K-12"
[GO:0008270 "zinc ion binding" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0008270 EMBL:U18997
GO:GO:0005840 GO:GO:0003735 PDB:2RDO PDBsum:2RDO eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066 PDB:3J0T PDB:3J0W
PDB:3J0Y PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T
PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14
PDBsum:3SGF PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8
PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V
PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG
PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2WWQ
PDB:2Z4L PDB:2Z4N PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P
PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01
PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ
PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR
PDB:4GAU PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8
PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC
PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO
PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI
PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1
PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3E1B PDBsum:3E1D
PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T
PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU PDBsum:3J01
PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC
PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0
PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B EMBL:X02130
PIR:A02787 RefSeq:NP_417698.1 RefSeq:YP_491415.1 PDB:3BBX
PDBsum:3BBX ProteinModelPortal:P0AA10 SMR:P0AA10 DIP:DIP-47837N
IntAct:P0AA10 MINT:MINT-1269598 PaxDb:P0AA10 PRIDE:P0AA10
EnsemblBacteria:EBESCT00000001772 EnsemblBacteria:EBESCT00000018148
GeneID:12932920 GeneID:947828 KEGG:ecj:Y75_p3151 KEGG:eco:b3231
PATRIC:32121888 EchoBASE:EB0867 EcoGene:EG10874
BioCyc:EcoCyc:EG10874-MONOMER BioCyc:ECOL316407:JW3200-MONOMER
EvolutionaryTrace:P0AA10 Genevestigator:P0AA10 Uniprot:P0AA10
Length = 142
Score = 87 (35.7 bits), Expect = 0.00064, P = 0.00064
Identities = 18/73 (24%), Positives = 38/73 (52%)
Query: 1 MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
+N+ +A+ G + + Y+HHTG+ GG+ ++ P V++ AV+ LP+ +
Sbjct: 57 LNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGR 116
Query: 61 RLMARLHIFPDQE 73
+ +L ++ E
Sbjct: 117 AMFRKLKVYAGNE 129
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.138 0.443 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 120 120 0.00091 102 3 11 22 0.48 30
29 0.48 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 579 (62 KB)
Total size of DFA: 148 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.63u 0.08s 14.71t Elapsed: 00:00:07
Total cpu time: 14.64u 0.08s 14.72t Elapsed: 00:00:07
Start: Thu Aug 15 12:27:19 2013 End: Thu Aug 15 12:27:26 2013