RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6264
         (120 letters)



>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 142

 Score = 60.4 bits (146), Expect = 2e-13
 Identities = 20/77 (25%), Positives = 35/77 (45%)

Query: 1   MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
           +N+  +AL G +   + Y  +TGY GG+    A +     P  V++ AV   LP+     
Sbjct: 54  INAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGR 113

Query: 61  RLMARLHIFPDQEVPED 77
            +  RL ++  +  P  
Sbjct: 114 AMHTRLKVYAGETHPHS 130


>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli
           [TaxId: 562]}
          Length = 140

 Score = 58.9 bits (142), Expect = 7e-13
 Identities = 18/77 (23%), Positives = 38/77 (49%)

Query: 1   MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
           +N+  +A+ G +   + Y+HHTG+ GG+      ++    P  V++ AV+  LP+  +  
Sbjct: 57  LNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGR 116

Query: 61  RLMARLHIFPDQEVPED 77
            +  +L ++   E    
Sbjct: 117 AMFRKLKVYAGNEHNHA 133


>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus
           thermophilus [TaxId: 274]}
          Length = 139

 Score = 55.4 bits (133), Expect = 1e-11
 Identities = 20/77 (25%), Positives = 40/77 (51%)

Query: 1   MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
           +N+  I + G + +++ Y  ++GYPGG+      ++    P  V++ AV+  LP+  +  
Sbjct: 55  VNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGR 114

Query: 61  RLMARLHIFPDQEVPED 77
           RL  RL ++   + P  
Sbjct: 115 RLFKRLKVYAGPDHPHQ 131


>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 142

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 8/76 (10%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 1   MNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVRWELPRSLIKF 60
           +N+    + G      + +        ++       +      ++++ +R  LP    + 
Sbjct: 31  VNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRG 90

Query: 61  R-LMARLHIFPDQEVP 75
           R    RL ++      
Sbjct: 91  RKAFRRLKVYVGIPKE 106


>d1j6ra_ d.173.1.2 (A:) Hypothetical protein TM0269 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 197

 Score = 25.9 bits (57), Expect = 1.3
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 52  ELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVD 105
           ++P +++K    A+L     +E+PE+  K V+    +L    + +  + D EVD
Sbjct: 14  KIPDNVLK----AKLGFGGAEEIPEEFRKTVNRAYEELLDAAKPVVLWRDFEVD 63


>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle
          domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 150

 Score = 24.8 bits (54), Expect = 2.7
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)

Query: 13 WKKR--AYFHHTGYPGGVSWTL 32
          W KR   Y +  G+ GGVSW +
Sbjct: 16 WAKRHNIYSNILGFLGGVSWAM 37


>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle
          domain {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 150

 Score = 24.4 bits (53), Expect = 3.3
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)

Query: 13 WKKR--AYFHHTGYPGGVSWTL 32
          W +R   Y +  G+PGGV+W +
Sbjct: 16 WAQRRAVYANIFGFPGGVAWAM 37


>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus
           (Bacillus anthracis) [TaxId: 1392]}
          Length = 722

 Score = 24.1 bits (52), Expect = 5.5
 Identities = 4/34 (11%), Positives = 11/34 (32%)

Query: 17  AYFHHTGYPGGVSWTLAWQLHEIDPTLVMKKAVR 50
            Y        G+ + L W   +    ++    ++
Sbjct: 106 QYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQ 139


>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD
           {Haemophilus influenzae [TaxId: 727]}
          Length = 252

 Score = 23.7 bits (51), Expect = 7.3
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 57  LIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLR 90
           L+      R  +     VP  L+     +IR+ R
Sbjct: 177 LLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWR 210


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.443 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 511,289
Number of extensions: 22382
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 13
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)