Query psy6265
Match_columns 91
No_of_seqs 122 out of 1026
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 21:58:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o85_A Ribosomal protein L7AE; 99.9 9.2E-26 3.1E-30 148.4 10.5 86 2-87 36-121 (122)
2 3jyw_G 60S ribosomal protein L 99.9 4.3E-27 1.5E-31 153.4 4.1 83 2-84 30-112 (113)
3 2lbw_A H/ACA ribonucleoprotein 99.9 2.4E-25 8.3E-30 146.0 10.1 86 2-87 25-121 (121)
4 1vq8_F 50S ribosomal protein L 99.9 1.4E-24 4.7E-29 141.9 9.8 86 2-87 34-119 (120)
5 2fc3_A 50S ribosomal protein L 99.9 1.2E-24 4.1E-29 143.0 9.2 87 2-88 33-119 (124)
6 1rlg_A 50S ribosomal protein L 99.9 1.9E-24 6.7E-29 141.0 9.3 87 2-88 32-118 (119)
7 2ale_A SNU13, NHP2/L7AE family 99.9 1.8E-24 6E-29 144.4 8.6 87 2-88 37-125 (134)
8 4a17_F RPL7A, 60S ribosomal pr 99.9 2.9E-24 9.9E-29 155.7 10.4 86 2-87 129-214 (255)
9 1xbi_A 50S ribosomal protein L 99.9 3E-24 1E-28 140.6 8.9 85 2-87 34-118 (120)
10 2jnb_A NHP2-like protein 1; sp 99.9 2.1E-24 7.1E-29 145.7 6.8 86 2-87 55-142 (144)
11 3izc_H 60S ribosomal protein R 99.9 3.2E-24 1.1E-28 155.7 8.2 86 2-87 136-221 (256)
12 2aif_A Ribosomal protein L7A; 99.9 1.6E-23 5.3E-28 139.7 10.7 86 2-87 46-133 (135)
13 2xzm_U Ribosomal protein L7AE 99.9 1.8E-23 6E-28 138.3 8.2 84 2-85 29-125 (126)
14 3iz5_H 60S ribosomal protein L 99.9 2.9E-23 9.9E-28 150.3 10.0 86 2-87 132-217 (258)
15 2zkr_f 60S ribosomal protein L 99.9 1.5E-23 5.1E-28 153.0 7.3 86 2-87 140-225 (266)
16 3v7e_A Ribosome-associated pro 99.9 4.2E-23 1.4E-27 127.3 7.8 65 2-67 16-80 (82)
17 3u5c_M 40S ribosomal protein S 99.9 3.4E-22 1.2E-26 134.7 6.3 85 2-86 45-142 (143)
18 3v7q_A Probable ribosomal prot 99.9 8.8E-22 3E-26 125.3 7.7 66 2-68 24-89 (101)
19 3on1_A BH2414 protein; structu 99.9 9.5E-22 3.3E-26 124.9 7.1 66 2-68 23-88 (101)
20 3iz5_f 60S ribosomal protein L 99.9 1.1E-21 3.9E-26 127.3 7.4 70 2-72 31-101 (112)
21 3u5e_c L32, RP73, YL38, 60S ri 99.9 1.3E-21 4.4E-26 125.3 6.9 68 2-70 27-96 (105)
22 4a18_G RPL30; ribosome, eukary 99.8 1.6E-21 5.4E-26 124.7 6.9 68 2-70 27-96 (104)
23 3j21_Z 50S ribosomal protein L 99.8 5.6E-21 1.9E-25 121.0 7.6 70 2-72 20-90 (99)
24 1w41_A 50S ribosomal protein L 99.8 1.1E-20 3.9E-25 119.8 8.4 68 2-70 21-90 (101)
25 3cpq_A 50S ribosomal protein L 99.8 1.6E-20 5.6E-25 121.0 8.7 69 2-71 26-96 (110)
26 2kg4_A Growth arrest and DNA-d 99.8 6.8E-20 2.3E-24 125.9 6.4 86 2-87 40-150 (165)
27 3vi6_A 60S ribosomal protein L 99.7 3.2E-18 1.1E-22 112.8 7.7 68 2-70 32-101 (125)
28 3cg6_A Growth arrest and DNA-d 99.4 5.5E-13 1.9E-17 89.8 8.3 84 2-85 30-130 (146)
29 3ffm_A Growth arrest and DNA-d 99.1 2.2E-10 7.5E-15 78.5 8.0 72 2-73 51-136 (167)
30 2ohw_A YUEI protein; structura 94.3 0.39 1.3E-05 31.3 8.3 46 2-48 52-97 (133)
31 3ir9_A Peptide chain release f 93.0 0.22 7.4E-06 33.4 5.4 67 2-68 51-161 (166)
32 1b93_A Protein (methylglyoxal 92.2 0.34 1.2E-05 32.3 5.5 53 4-56 73-130 (152)
33 1x52_A Pelota homolog, CGI-17; 91.9 0.23 7.7E-06 31.8 4.2 67 2-70 43-116 (124)
34 3drn_A Peroxiredoxin, bacterio 91.3 1.4 4.8E-05 27.7 7.6 80 3-87 53-147 (161)
35 1vmd_A MGS, methylglyoxal synt 90.4 0.38 1.3E-05 33.0 4.4 55 4-59 89-149 (178)
36 2xw6_A MGS, methylglyoxal synt 89.9 0.33 1.1E-05 31.7 3.6 52 4-56 65-122 (134)
37 3gkn_A Bacterioferritin comigr 89.2 1.1 3.6E-05 28.1 5.6 80 3-87 59-160 (163)
38 2yvq_A Carbamoyl-phosphate syn 88.6 0.74 2.5E-05 29.7 4.6 43 4-46 87-131 (143)
39 2qi2_A Pelota, cell division p 88.0 0.39 1.3E-05 35.6 3.3 67 2-70 270-337 (347)
40 3nkl_A UDP-D-quinovosamine 4-d 87.1 1.7 5.7E-05 26.8 5.5 50 4-53 56-105 (141)
41 2ggt_A SCO1 protein homolog, m 85.9 3.2 0.00011 25.5 6.4 56 3-59 47-110 (164)
42 3nk6_A 23S rRNA methyltransfer 85.1 4.3 0.00015 28.9 7.4 64 3-70 41-106 (277)
43 3oby_A Protein pelota homolog; 84.8 0.67 2.3E-05 34.5 3.1 68 2-70 270-341 (352)
44 3j15_A Protein pelota; ribosom 83.9 0.53 1.8E-05 34.9 2.2 66 2-68 285-353 (357)
45 3e20_C Eukaryotic peptide chai 83.7 2.2 7.6E-05 32.5 5.7 69 2-70 310-423 (441)
46 3obw_A Protein pelota homolog; 83.5 1.4 4.9E-05 32.8 4.5 66 2-68 290-360 (364)
47 1o73_A Tryparedoxin; electron 82.7 5.8 0.0002 23.8 7.2 76 12-91 61-142 (144)
48 3agj_B Protein pelota homolog; 80.4 2.1 7.2E-05 31.6 4.3 68 2-70 277-350 (358)
49 2vgn_A DOM34; translation term 80.1 4.3 0.00015 30.3 6.0 67 2-69 302-374 (386)
50 3s9f_A Tryparedoxin; thioredox 80.0 2.1 7.1E-05 27.2 3.7 84 4-91 72-162 (165)
51 3agk_A Peptide chain release f 79.3 1.8 6E-05 32.0 3.6 50 2-54 304-353 (373)
52 3mfq_A TROA, high-affinity zin 79.2 2.8 9.5E-05 29.7 4.5 44 3-47 202-245 (282)
53 1gz0_A Hypothetical tRNA/RRNA 79.1 7.2 0.00025 27.3 6.6 66 3-70 19-87 (253)
54 2f9s_A Thiol-disulfide oxidore 78.4 7.4 0.00025 23.5 5.9 62 5-70 51-113 (151)
55 3grc_A Sensor protein, kinase; 78.0 8.4 0.00029 22.7 8.4 82 3-84 40-125 (140)
56 2ioj_A Hypothetical protein AF 77.5 4.2 0.00014 25.5 4.6 39 12-53 73-112 (139)
57 3vqt_A RF-3, peptide chain rel 77.0 3.2 0.00011 32.2 4.6 69 2-86 114-182 (548)
58 1i5g_A Tryparedoxin II; electr 76.9 9.7 0.00033 22.8 7.2 76 12-91 61-142 (144)
59 2l5o_A Putative thioredoxin; s 75.9 10 0.00036 22.7 9.7 63 6-71 54-117 (153)
60 2rli_A SCO2 protein homolog, m 75.8 11 0.00039 23.1 6.7 56 3-59 50-113 (171)
61 1o8x_A Tryparedoxin, TRYX, TXN 75.3 2.1 7.1E-05 26.1 2.6 83 5-91 53-142 (146)
62 3fw2_A Thiol-disulfide oxidore 75.3 11 0.00038 22.8 7.5 64 5-72 60-128 (150)
63 1jdq_A TM006 protein, hypothet 75.2 3.3 0.00011 25.2 3.5 39 5-46 43-83 (98)
64 3f6p_A Transcriptional regulat 75.1 9 0.00031 22.2 5.4 80 3-85 36-118 (120)
65 1knx_A Probable HPR(Ser) kinas 74.9 4.4 0.00015 29.6 4.6 41 4-47 74-114 (312)
66 3cx3_A Lipoprotein; zinc-bindi 74.3 5.6 0.00019 28.0 5.0 63 23-86 210-281 (284)
67 3kcm_A Thioredoxin family prot 74.1 12 0.0004 22.5 6.7 62 7-71 55-117 (154)
68 3gi1_A LBP, laminin-binding pr 74.1 6.8 0.00023 27.7 5.4 18 30-47 218-235 (286)
69 3ixr_A Bacterioferritin comigr 73.6 9.9 0.00034 24.3 5.8 52 3-59 75-127 (179)
70 3erw_A Sporulation thiol-disul 72.9 6.5 0.00022 23.2 4.5 59 12-71 66-125 (145)
71 1pq4_A Periplasmic binding pro 72.8 9.4 0.00032 27.0 5.9 58 22-84 220-284 (291)
72 3mca_B Protein DOM34, elongati 72.3 4.6 0.00016 30.3 4.3 65 2-68 296-367 (390)
73 1n3y_A Integrin alpha-X; alpha 71.9 6.3 0.00021 25.2 4.5 73 12-84 109-193 (198)
74 1ipa_A RRMH, RNA 2'-O-ribose m 71.9 18 0.00062 25.5 7.2 65 3-69 35-102 (274)
75 2l82_A Designed protein OR32; 71.8 17 0.00059 23.4 6.8 55 2-57 15-69 (162)
76 3n53_A Response regulator rece 71.7 13 0.00044 21.9 6.4 79 3-81 36-117 (140)
77 1ytl_A Acetyl-COA decarboxylas 71.6 9 0.00031 25.5 5.3 43 3-47 25-68 (174)
78 2a4v_A Peroxiredoxin DOT5; yea 70.9 16 0.00053 22.5 8.5 51 4-60 60-111 (159)
79 2lrn_A Thiol:disulfide interch 70.2 15 0.00053 22.2 6.5 61 7-71 56-120 (152)
80 1dt9_A ERF1, protein (eukaryot 70.0 7.6 0.00026 29.2 5.1 67 2-68 305-414 (437)
81 3cf4_G Acetyl-COA decarboxylas 69.1 13 0.00046 24.0 5.6 46 2-47 24-69 (170)
82 1uf3_A Hypothetical protein TT 69.0 8.9 0.0003 24.7 4.7 47 4-50 23-73 (228)
83 3qel_B Glutamate [NMDA] recept 68.3 6 0.0002 28.4 4.1 46 2-47 52-97 (364)
84 1xvw_A Hypothetical protein RV 68.2 4.7 0.00016 24.8 3.1 71 12-87 69-158 (160)
85 3dnf_A ISPH, LYTB, 4-hydroxy-3 67.6 27 0.00093 25.4 7.4 78 7-87 204-281 (297)
86 1v7p_C Integrin alpha-2; snake 67.4 9.8 0.00033 24.6 4.7 75 12-86 107-197 (200)
87 3lvj_C Sulfurtransferase TUSA; 66.3 5.8 0.0002 23.0 3.0 38 5-46 27-67 (82)
88 3kht_A Response regulator; PSI 65.9 13 0.00045 22.0 4.8 46 3-48 41-89 (144)
89 3gl9_A Response regulator; bet 65.8 8.3 0.00028 22.5 3.8 77 3-82 36-118 (122)
90 3ib7_A ICC protein; metallopho 65.8 8.4 0.00029 26.4 4.3 49 3-51 54-111 (330)
91 3ha9_A Uncharacterized thiored 65.8 9.7 0.00033 23.4 4.3 55 13-71 68-141 (165)
92 3or5_A Thiol:disulfide interch 65.8 20 0.00067 21.7 5.9 61 6-70 60-126 (165)
93 2wfc_A Peroxiredoxin 5, PRDX5; 65.6 23 0.00079 22.5 6.6 50 5-59 58-111 (167)
94 2gkg_A Response regulator homo 64.9 17 0.00057 20.6 5.3 76 3-82 39-121 (127)
95 3u5r_E Uncharacterized protein 64.7 27 0.00092 22.9 8.6 68 4-71 83-154 (218)
96 3hz7_A Uncharacterized protein 64.5 6.9 0.00024 23.1 3.2 40 3-46 19-59 (87)
97 1xzo_A BSSCO, hypothetical pro 64.5 22 0.00075 21.8 5.8 40 3-43 57-98 (174)
98 2k6v_A Putative cytochrome C o 64.3 10 0.00036 23.2 4.2 45 13-58 72-120 (172)
99 3szu_A ISPH, 4-hydroxy-3-methy 62.8 29 0.001 25.6 6.9 71 14-86 226-296 (328)
100 3md9_A Hemin-binding periplasm 62.5 31 0.001 23.0 6.6 49 7-59 53-111 (255)
101 3p7x_A Probable thiol peroxida 62.3 11 0.00039 23.4 4.1 71 12-87 76-166 (166)
102 1mb3_A Cell division response 62.0 15 0.0005 21.0 4.3 82 3-84 35-119 (124)
103 3fkf_A Thiol-disulfide oxidore 61.9 22 0.00075 20.9 7.0 55 14-72 68-126 (148)
104 4g2e_A Peroxiredoxin; redox pr 61.8 14 0.00049 23.0 4.6 74 9-88 60-157 (157)
105 3tsm_A IGPS, indole-3-glycerol 61.8 34 0.0011 24.3 6.9 62 4-67 134-196 (272)
106 2lqo_A Putative glutaredoxin R 61.4 22 0.00076 20.8 6.9 30 15-46 5-34 (92)
107 1tp9_A Peroxiredoxin, PRX D (t 61.1 27 0.00092 21.7 7.8 51 4-59 61-115 (162)
108 3t6k_A Response regulator rece 60.7 23 0.00079 20.8 5.3 79 3-84 38-122 (136)
109 4fo5_A Thioredoxin-like protei 60.6 6.7 0.00023 23.6 2.7 57 12-72 64-125 (143)
110 1pav_A Hypothetical protein TA 60.3 2 6.8E-05 24.7 0.2 37 5-44 23-61 (78)
111 2jba_A Phosphate regulon trans 60.1 21 0.00073 20.3 5.1 81 4-84 37-120 (127)
112 3zy2_A Putative GDP-fucose pro 60.0 9.8 0.00034 28.6 3.9 44 2-47 268-311 (362)
113 2nxf_A Putative dimetal phosph 59.1 29 0.00099 23.3 6.0 50 3-52 41-99 (322)
114 4gqc_A Thiol peroxidase, perox 59.0 8.6 0.00029 24.4 3.1 45 9-58 63-108 (164)
115 2wji_A Ferrous iron transport 58.6 11 0.00039 23.2 3.6 74 12-85 80-164 (165)
116 1xty_A PTH, peptidyl-tRNA hydr 58.6 26 0.00088 21.8 5.3 68 8-85 49-118 (120)
117 3cnb_A DNA-binding response re 58.5 19 0.00065 20.9 4.5 78 3-83 44-127 (143)
118 2pln_A HP1043, response regula 58.3 18 0.0006 21.2 4.3 74 3-83 52-130 (137)
119 3gl3_A Putative thiol:disulfid 58.2 27 0.00092 20.8 7.3 62 5-70 53-115 (152)
120 3cg4_A Response regulator rece 58.0 25 0.00087 20.4 6.2 78 3-80 41-121 (142)
121 2yvt_A Hypothetical protein AQ 57.6 18 0.00062 23.9 4.7 23 3-25 22-44 (260)
122 1ivn_A Thioesterase I; hydrola 57.6 32 0.0011 21.5 5.9 46 2-47 88-140 (190)
123 2prs_A High-affinity zinc upta 57.3 46 0.0016 23.2 7.1 62 22-84 206-277 (284)
124 3gt7_A Sensor protein; structu 57.2 28 0.00094 21.0 5.2 76 3-81 41-122 (154)
125 3iev_A GTP-binding protein ERA 57.0 39 0.0013 23.6 6.6 84 4-88 85-184 (308)
126 2i81_A 2-Cys peroxiredoxin; st 56.7 35 0.0012 22.5 6.0 62 4-70 77-151 (213)
127 3eyt_A Uncharacterized protein 55.7 31 0.0011 20.7 6.0 60 12-71 61-128 (158)
128 1je3_A EC005, hypothetical 8.6 55.0 4 0.00014 24.8 0.9 38 5-45 44-83 (97)
129 3qq5_A Small GTP-binding prote 54.8 15 0.00053 27.5 4.3 78 5-84 107-194 (423)
130 1wn2_A Peptidyl-tRNA hydrolase 54.5 37 0.0013 21.2 5.9 68 8-85 50-119 (121)
131 1zgz_A Torcad operon transcrip 54.4 22 0.00076 20.1 4.2 44 3-46 36-79 (122)
132 3av3_A Phosphoribosylglycinami 54.3 25 0.00086 23.8 5.0 41 3-47 18-60 (212)
133 3h5i_A Response regulator/sens 54.3 31 0.001 20.3 6.4 75 3-80 39-118 (140)
134 3cg0_A Response regulator rece 54.2 29 0.001 20.0 4.9 52 3-57 44-102 (140)
135 2qzj_A Two-component response 54.1 20 0.00069 21.1 4.1 73 3-78 38-113 (136)
136 3d03_A Phosphohydrolase; glyce 54.0 37 0.0013 22.4 5.8 49 3-51 29-82 (274)
137 2lnd_A De novo designed protei 53.9 27 0.00094 21.2 4.6 52 2-54 40-93 (112)
138 1q7s_A BIT1, protein CGI-147; 53.8 28 0.00097 21.5 4.9 66 8-85 46-115 (117)
139 3h75_A Periplasmic sugar-bindi 53.4 24 0.00081 24.4 4.9 41 5-48 53-94 (350)
140 4fn5_A EF-G 1, elongation fact 52.8 17 0.00058 28.9 4.4 69 2-86 99-167 (709)
141 2a9o_A Response regulator; ess 52.8 20 0.0007 20.1 3.9 45 3-47 35-79 (120)
142 1pjq_A CYSG, siroheme synthase 52.4 16 0.00055 27.5 4.1 55 14-72 73-131 (457)
143 2cvb_A Probable thiol-disulfid 52.4 40 0.0014 21.0 5.8 57 14-70 66-126 (188)
144 1rlk_A Hypothetical protein TA 52.2 38 0.0013 21.0 5.2 68 8-85 46-115 (117)
145 3jy6_A Transcriptional regulat 52.1 42 0.0014 22.1 5.9 39 5-48 55-93 (276)
146 2zay_A Response regulator rece 52.0 21 0.00073 21.0 4.0 45 3-47 42-89 (147)
147 3nhm_A Response regulator; pro 51.7 32 0.0011 19.7 6.9 79 3-84 37-120 (133)
148 2ywi_A Hypothetical conserved 51.6 42 0.0014 21.0 6.4 64 6-69 72-139 (196)
149 1d2f_A MALY protein; aminotran 51.3 25 0.00086 24.6 4.8 42 4-45 153-200 (390)
150 3av0_A DNA double-strand break 51.2 21 0.00071 25.9 4.4 48 3-51 50-106 (386)
151 1shu_X Anthrax toxin receptor 51.1 41 0.0014 20.8 6.0 71 12-83 102-180 (182)
152 1s3l_A Hypothetical protein MJ 51.0 18 0.00061 23.7 3.7 43 3-49 42-84 (190)
153 2prs_A High-affinity zinc upta 51.0 27 0.00093 24.4 4.9 42 2-47 212-253 (284)
154 4dhe_A Probable GTP-binding pr 50.9 45 0.0015 21.2 6.2 77 14-90 116-215 (223)
155 3p9d_H T-complex protein 1 sub 50.9 25 0.00087 27.4 5.1 44 3-51 285-328 (568)
156 3hh1_A Tetrapyrrole methylase 50.9 37 0.0013 20.4 5.0 43 4-47 71-115 (117)
157 3hp4_A GDSL-esterase; psychrot 50.9 32 0.0011 21.2 4.8 46 3-48 93-145 (185)
158 1pt6_A Integrin alpha-1; cell 50.8 13 0.00044 24.3 3.0 76 12-87 108-199 (213)
159 2jsy_A Probable thiol peroxida 50.8 38 0.0013 20.7 5.2 44 12-60 75-121 (167)
160 3g0t_A Putative aminotransfera 50.7 26 0.00088 24.9 4.8 42 4-45 173-220 (437)
161 2rjn_A Response regulator rece 50.3 38 0.0013 20.1 5.2 48 3-50 41-89 (154)
162 1mf7_A Integrin alpha M; cell 50.2 9.2 0.00032 24.5 2.2 73 13-85 106-190 (194)
163 1toa_A Tromp-1, protein (perip 50.2 34 0.0012 24.4 5.4 24 23-47 230-253 (313)
164 2qr3_A Two-component system re 50.2 35 0.0012 19.7 5.8 76 3-83 37-123 (140)
165 2zv3_A PTH, peptidyl-tRNA hydr 49.9 22 0.00077 22.0 3.9 68 8-85 44-113 (115)
166 3hww_A 2-succinyl-5-enolpyruvy 49.8 40 0.0014 25.7 6.0 55 32-86 497-555 (556)
167 3hdc_A Thioredoxin family prot 49.3 39 0.0014 20.4 5.0 38 34-71 88-126 (158)
168 3p9d_A T-complex protein 1 sub 48.8 28 0.00094 27.1 5.0 43 3-50 282-324 (559)
169 3i8s_A Ferrous iron transport 48.8 15 0.00051 25.3 3.2 45 11-55 83-127 (274)
170 1jbe_A Chemotaxis protein CHEY 48.7 32 0.0011 19.6 4.3 45 3-47 39-86 (128)
171 3bzy_B ESCU; auto cleavage pro 48.6 13 0.00044 22.0 2.4 21 27-47 27-47 (83)
172 1c7n_A Cystalysin; transferase 48.6 26 0.00089 24.5 4.5 42 4-45 155-202 (399)
173 2bmx_A Alkyl hydroperoxidase C 48.1 51 0.0017 20.9 7.1 62 4-70 70-141 (195)
174 2rdo_7 EF-G, elongation factor 48.0 44 0.0015 26.6 6.2 50 3-52 97-146 (704)
175 1lu4_A Soluble secreted antige 47.9 38 0.0013 19.5 5.9 55 13-71 55-110 (136)
176 2o1e_A YCDH; alpha-beta protei 47.7 10 0.00035 27.2 2.2 25 22-47 222-246 (312)
177 3ecd_A Serine hydroxymethyltra 47.4 16 0.00054 25.7 3.2 42 4-46 163-206 (425)
178 2dyk_A GTP-binding protein; GT 47.4 13 0.00044 22.3 2.4 55 29-84 97-160 (161)
179 3psh_A Protein HI_1472; substr 47.2 56 0.0019 22.6 6.1 35 8-47 79-113 (326)
180 2b5x_A YKUV protein, TRXY; thi 47.2 41 0.0014 19.6 7.1 58 14-71 62-121 (148)
181 1xhf_A DYE resistance, aerobic 47.0 30 0.001 19.6 4.0 45 3-47 37-81 (123)
182 2yv5_A YJEQ protein; hydrolase 46.8 14 0.00048 26.0 2.8 23 30-52 100-122 (302)
183 1y8q_A Ubiquitin-like 1 activa 46.6 17 0.00058 26.4 3.3 34 13-48 125-158 (346)
184 3hcz_A Possible thiol-disulfid 46.6 42 0.0014 19.6 8.0 64 4-71 55-122 (148)
185 1we0_A Alkyl hydroperoxide red 46.4 52 0.0018 20.6 6.8 62 3-69 55-127 (187)
186 3gbx_A Serine hydroxymethyltra 46.1 20 0.00068 25.1 3.6 43 3-46 159-203 (420)
187 3ia1_A THIO-disulfide isomeras 46.1 45 0.0015 19.8 6.3 57 13-71 60-120 (154)
188 1qkk_A DCTD, C4-dicarboxylate 45.8 41 0.0014 20.0 4.6 48 3-50 37-85 (155)
189 3qja_A IGPS, indole-3-glycerol 45.5 56 0.0019 22.9 5.9 53 4-57 127-180 (272)
190 3dfz_A SIRC, precorrin-2 dehyd 45.3 33 0.0011 23.5 4.5 34 14-50 92-125 (223)
191 3p9d_D T-complex protein 1 sub 45.3 54 0.0019 25.2 6.1 50 3-57 272-329 (528)
192 3qmx_A Glutaredoxin A, glutare 45.2 42 0.0014 19.5 4.5 27 17-46 20-46 (99)
193 4e7p_A Response regulator; DNA 45.2 33 0.0011 20.4 4.1 77 3-84 56-138 (150)
194 1e2b_A Enzyme IIB-cellobiose; 45.2 25 0.00085 21.2 3.5 18 27-44 18-35 (106)
195 3iby_A Ferrous iron transport 45.2 32 0.0011 23.5 4.5 49 9-57 79-127 (256)
196 3tr5_A RF-3, peptide chain rel 45.1 19 0.00064 27.8 3.5 50 3-52 97-146 (528)
197 1tjy_A Sugar transport protein 45.1 35 0.0012 23.3 4.7 38 7-47 54-92 (316)
198 3ipz_A Monothiol glutaredoxin- 45.1 43 0.0015 19.7 4.6 48 7-59 13-72 (109)
199 1y0n_A Hypothetical UPF0270 pr 44.9 16 0.00056 21.6 2.5 17 2-18 40-56 (78)
200 8abp_A L-arabinose-binding pro 44.8 43 0.0015 22.3 5.0 40 6-48 50-90 (306)
201 2wjg_A FEOB, ferrous iron tran 44.8 21 0.00071 22.1 3.2 76 13-88 85-171 (188)
202 3iyg_B T-complex protein 1 sub 44.7 39 0.0013 25.9 5.2 41 3-48 263-303 (513)
203 1wik_A Thioredoxin-like protei 44.6 46 0.0016 19.4 5.5 51 5-59 8-69 (109)
204 1zye_A Thioredoxin-dependent p 44.2 64 0.0022 21.2 5.7 62 4-70 81-156 (220)
205 3zyw_A Glutaredoxin-3; metal b 44.1 45 0.0015 19.9 4.6 30 30-59 35-70 (111)
206 3tb6_A Arabinose metabolism tr 44.1 39 0.0013 22.3 4.6 44 5-48 63-107 (298)
207 3hh8_A Metal ABC transporter s 44.1 31 0.0011 24.4 4.3 19 29-47 221-239 (294)
208 1zof_A Alkyl hydroperoxide-red 44.0 60 0.002 20.6 7.0 62 4-70 58-132 (198)
209 3l2b_A Probable manganase-depe 43.9 35 0.0012 22.5 4.4 80 6-88 133-221 (245)
210 4fbw_A DNA repair protein RAD3 43.7 63 0.0021 24.3 6.2 22 3-24 42-63 (417)
211 3iyg_A T-complex protein 1 sub 43.6 48 0.0016 25.5 5.6 40 3-47 266-305 (529)
212 1qmv_A Human thioredoxin perox 43.4 56 0.0019 20.8 5.2 51 4-59 59-117 (197)
213 3hv2_A Response regulator/HD d 43.3 48 0.0017 19.6 4.7 44 3-48 48-94 (153)
214 3aq1_B Thermosome subunit; gro 43.3 43 0.0015 25.6 5.2 50 3-57 228-280 (500)
215 1t1v_A SH3BGRL3, SH3 domain-bi 43.2 44 0.0015 18.8 5.2 29 30-58 22-56 (93)
216 3ztl_A Thioredoxin peroxidase; 43.1 69 0.0023 21.0 6.1 63 3-70 93-169 (222)
217 1ijb_A VON willebrand factor; 42.7 57 0.0019 21.0 5.2 73 12-84 114-195 (202)
218 2q8u_A Exonuclease, putative; 42.7 34 0.0011 24.0 4.3 46 3-50 51-106 (336)
219 3rjt_A Lipolytic protein G-D-S 42.5 52 0.0018 20.4 4.9 46 2-47 119-175 (216)
220 3lua_A Response regulator rece 42.3 24 0.00082 20.6 3.1 77 3-82 39-123 (140)
221 3ewl_A Uncharacterized conserv 42.3 51 0.0017 19.3 7.0 64 5-72 55-121 (142)
222 1qg8_A Protein (spore coat pol 42.1 68 0.0023 20.7 5.7 85 2-86 16-115 (255)
223 3cwq_A Para family chromosome 42.0 31 0.0011 22.6 3.8 54 4-57 110-168 (209)
224 3a1s_A Iron(II) transport prot 42.0 49 0.0017 22.5 5.0 77 9-85 79-166 (258)
225 4a29_A Engineered retro-aldol 41.9 87 0.003 22.3 6.4 55 4-59 118-173 (258)
226 3me7_A Putative uncharacterize 41.8 36 0.0012 21.3 4.0 66 4-71 53-137 (170)
227 3j25_A Tetracycline resistance 41.8 23 0.00078 27.8 3.6 49 2-50 81-129 (638)
228 1k66_A Phytochrome response re 41.6 42 0.0014 19.5 4.1 45 3-47 42-99 (149)
229 2b9s_B DNA topoisomerase I-lik 41.5 7 0.00024 22.3 0.4 22 33-54 29-50 (62)
230 3l6u_A ABC-type sugar transpor 41.5 63 0.0022 21.3 5.4 41 5-48 56-97 (293)
231 1svv_A Threonine aldolase; str 41.5 38 0.0013 22.9 4.4 45 3-47 129-184 (359)
232 1k68_A Phytochrome response re 41.4 43 0.0015 19.1 4.1 54 3-56 38-104 (140)
233 2lja_A Putative thiol-disulfid 41.3 54 0.0019 19.3 6.0 54 13-70 63-118 (152)
234 3k4h_A Putative transcriptiona 41.2 55 0.0019 21.6 5.1 40 4-48 60-100 (292)
235 3h5n_A MCCB protein; ubiquitin 41.2 37 0.0013 24.7 4.4 35 13-48 208-242 (353)
236 1ii7_A MRE11 nuclease; RAD50, 41.1 69 0.0024 22.4 5.8 47 3-49 30-84 (333)
237 1a6d_B Thermosome (beta subuni 41.0 48 0.0016 25.6 5.3 50 3-57 275-327 (543)
238 2o1e_A YCDH; alpha-beta protei 40.9 33 0.0011 24.5 4.1 44 2-49 228-271 (312)
239 2oho_A Glutamate racemase; iso 40.8 40 0.0014 23.4 4.4 41 3-46 64-104 (273)
240 3m9w_A D-xylose-binding peripl 40.7 54 0.0018 22.0 5.0 40 6-48 51-91 (313)
241 2b2x_A Integrin alpha-1; compu 40.7 29 0.001 22.7 3.6 74 12-85 123-212 (223)
242 2etv_A Iron(III) ABC transport 40.6 40 0.0014 23.9 4.5 47 9-60 92-152 (346)
243 2c78_A Elongation factor TU-A; 40.6 42 0.0014 24.4 4.7 49 3-52 90-140 (405)
244 3lor_A Thiol-disulfide isomera 40.6 57 0.002 19.4 5.4 58 13-70 64-130 (160)
245 1tmy_A CHEY protein, TMY; chem 40.5 48 0.0016 18.5 4.7 73 3-78 37-113 (120)
246 3dzz_A Putative pyridoxal 5'-p 40.4 53 0.0018 22.6 5.0 42 4-45 151-198 (391)
247 3eur_A Uncharacterized protein 40.3 56 0.0019 19.2 6.1 64 5-72 59-125 (142)
248 1psq_A Probable thiol peroxida 40.3 23 0.00077 21.9 2.8 71 12-87 73-163 (163)
249 2wci_A Glutaredoxin-4; redox-a 40.3 53 0.0018 20.6 4.6 52 3-59 26-89 (135)
250 3hdv_A Response regulator; PSI 40.1 52 0.0018 18.9 4.4 78 3-83 41-124 (136)
251 2ywr_A Phosphoribosylglycinami 40.1 44 0.0015 22.6 4.4 41 3-47 16-58 (216)
252 3t1o_A Gliding protein MGLA; G 40.1 16 0.00053 22.7 2.0 71 14-85 98-191 (198)
253 2elf_A Protein translation elo 39.9 58 0.002 23.7 5.3 50 2-52 74-125 (370)
254 1t9h_A YLOQ, probable GTPase E 39.6 21 0.00073 25.6 2.9 25 28-52 105-129 (307)
255 3qk7_A Transcriptional regulat 39.6 67 0.0023 21.4 5.4 40 4-48 56-96 (294)
256 3c3m_A Response regulator rece 39.6 56 0.0019 19.0 5.2 45 3-47 37-84 (138)
257 2wem_A Glutaredoxin-related pr 39.5 63 0.0022 19.6 5.3 61 3-69 11-84 (118)
258 3eul_A Possible nitrate/nitrit 39.5 42 0.0014 19.9 3.9 76 3-83 51-132 (152)
259 3l49_A ABC sugar (ribose) tran 39.3 51 0.0017 21.8 4.6 41 6-48 54-94 (291)
260 3ksm_A ABC-type sugar transpor 39.3 66 0.0023 20.9 5.2 39 7-48 53-92 (276)
261 3gbv_A Putative LACI-family tr 39.1 50 0.0017 21.8 4.6 41 6-48 62-102 (304)
262 2vt1_B Surface presentation of 39.1 15 0.00052 22.3 1.7 28 27-57 27-54 (93)
263 1xvl_A Mn transporter, MNTC pr 39.0 49 0.0017 23.7 4.8 25 22-47 236-260 (321)
264 1o69_A Aminotransferase; struc 39.0 27 0.00091 24.7 3.3 42 4-45 111-154 (394)
265 1zud_1 Adenylyltransferase THI 39.0 37 0.0013 23.3 3.9 32 14-47 119-150 (251)
266 3rot_A ABC sugar transporter, 38.9 52 0.0018 22.0 4.7 40 6-48 54-94 (297)
267 3p9x_A Phosphoribosylglycinami 38.9 65 0.0022 22.0 5.2 40 4-47 18-59 (211)
268 3ist_A Glutamate racemase; str 38.7 23 0.00079 24.9 2.9 41 3-46 57-97 (269)
269 2h5e_A Peptide chain release f 38.7 26 0.00089 26.9 3.4 50 3-52 97-146 (529)
270 3iyg_E T-complex protein 1 sub 38.4 73 0.0025 24.4 5.9 43 3-50 264-306 (515)
271 2h01_A 2-Cys peroxiredoxin; th 38.4 73 0.0025 20.0 6.6 62 4-70 56-130 (192)
272 2b7k_A SCO1 protein; metalloch 38.4 77 0.0026 20.3 7.7 55 4-59 66-127 (200)
273 3hdg_A Uncharacterized protein 38.3 34 0.0012 19.8 3.3 46 3-48 41-87 (137)
274 4dzz_A Plasmid partitioning pr 38.3 27 0.00092 22.1 3.0 79 4-85 116-202 (206)
275 3raz_A Thioredoxin-related pro 38.2 63 0.0022 19.2 6.7 56 11-71 55-116 (151)
276 3kh7_A Thiol:disulfide interch 38.0 72 0.0025 19.9 7.3 59 8-70 82-142 (176)
277 1a6d_A Thermosome (alpha subun 37.9 45 0.0015 25.8 4.7 50 3-57 274-326 (545)
278 1uul_A Tryparedoxin peroxidase 37.9 78 0.0027 20.2 6.7 62 4-70 61-136 (202)
279 3g1w_A Sugar ABC transporter; 37.9 71 0.0024 21.2 5.2 40 6-48 54-94 (305)
280 3uhf_A Glutamate racemase; str 37.8 21 0.00073 25.3 2.6 41 3-46 76-116 (274)
281 4hqo_A Sporozoite surface prot 37.6 33 0.0011 23.4 3.5 71 13-83 125-205 (266)
282 3auf_A Glycinamide ribonucleot 37.5 50 0.0017 22.7 4.4 41 3-47 37-79 (229)
283 1zh2_A KDP operon transcriptio 37.5 31 0.0011 19.3 2.9 43 4-46 36-78 (121)
284 2glf_A Probable M18-family ami 37.5 19 0.00064 27.5 2.4 23 22-45 367-389 (450)
285 3i42_A Response regulator rece 37.5 28 0.00096 19.9 2.8 46 3-48 37-85 (127)
286 1ko7_A HPR kinase/phosphatase; 37.1 39 0.0013 24.5 4.0 40 5-47 72-111 (314)
287 2a22_A Vacuolar protein sortin 37.0 55 0.0019 21.5 4.5 41 7-51 49-89 (215)
288 3vi3_B Integrin beta-1; beta p 36.9 55 0.0019 25.2 4.9 53 29-84 299-362 (454)
289 3gv0_A Transcriptional regulat 36.8 91 0.0031 20.6 5.7 40 4-48 57-97 (288)
290 3dbi_A Sugar-binding transcrip 36.8 83 0.0028 21.5 5.5 40 5-48 111-151 (338)
291 3tho_B Exonuclease, putative; 36.7 46 0.0016 24.1 4.3 47 3-51 33-89 (379)
292 3o74_A Fructose transport syst 36.7 72 0.0025 20.7 5.0 41 5-48 50-90 (272)
293 3nra_A Aspartate aminotransfer 36.5 52 0.0018 22.8 4.5 41 4-45 171-217 (407)
294 2r79_A Periplasmic binding pro 36.4 98 0.0034 20.9 6.4 49 7-59 53-111 (283)
295 2e0n_A Precorrin-2 C20-methylt 36.3 83 0.0028 21.3 5.5 57 4-60 88-147 (259)
296 4ap5_A GDP-fucose protein O-fu 36.2 27 0.00093 25.6 3.1 25 2-26 292-316 (408)
297 4dcu_A GTP-binding protein ENG 35.9 47 0.0016 24.6 4.3 49 5-53 271-319 (456)
298 3cz5_A Two-component response 35.8 58 0.002 19.2 4.2 45 3-47 41-86 (153)
299 1n8j_A AHPC, alkyl hydroperoxi 35.8 83 0.0028 19.9 6.9 52 3-59 54-110 (186)
300 4ds3_A Phosphoribosylglycinami 35.8 64 0.0022 21.9 4.7 40 4-47 23-64 (209)
301 3n6r_B Propionyl-COA carboxyla 35.7 23 0.00078 27.8 2.6 32 15-46 339-379 (531)
302 2oqx_A Tryptophanase; lyase, p 35.5 65 0.0022 23.0 5.0 43 4-46 171-223 (467)
303 1q3q_A Thermosome alpha subuni 35.4 50 0.0017 25.6 4.5 50 3-57 277-329 (548)
304 3hzh_A Chemotaxis response reg 35.3 42 0.0014 20.2 3.5 75 3-82 71-153 (157)
305 2kpo_A Rossmann 2X2 fold prote 35.2 75 0.0026 19.2 6.2 62 16-83 5-70 (110)
306 3egc_A Putative ribose operon 35.1 56 0.0019 21.6 4.3 39 5-48 56-95 (291)
307 2bgw_A XPF endonuclease; hydro 35.1 98 0.0034 20.5 6.9 54 4-57 71-131 (219)
308 3l8a_A METC, putative aminotra 35.0 60 0.0021 23.0 4.7 43 3-45 184-232 (421)
309 3piu_A 1-aminocyclopropane-1-c 35.0 72 0.0025 22.7 5.1 42 4-45 177-229 (435)
310 1p6q_A CHEY2; chemotaxis, sign 35.0 51 0.0017 18.7 3.7 19 4-22 42-60 (129)
311 3n2n_F Anthrax toxin receptor 34.9 43 0.0015 20.8 3.5 68 13-82 106-182 (185)
312 2i4r_A V-type ATP synthase sub 34.9 42 0.0014 20.3 3.3 42 9-51 49-91 (102)
313 3pqc_A Probable GTP-binding pr 34.9 34 0.0012 21.0 3.0 40 13-52 104-145 (195)
314 2r7a_A Bacterial heme binding 34.8 98 0.0033 20.4 6.2 50 7-60 53-113 (256)
315 4hqf_A Thrombospondin-related 34.6 1.1E+02 0.0036 20.8 6.8 72 13-84 128-209 (281)
316 1ax4_A Tryptophanase; tryptoph 34.5 59 0.002 23.3 4.6 43 4-46 171-223 (467)
317 3zrd_A Thiol peroxidase; oxido 34.3 64 0.0022 20.9 4.4 43 12-59 109-154 (200)
318 3hcw_A Maltose operon transcri 34.2 92 0.0031 20.8 5.4 40 4-48 59-99 (295)
319 3s81_A Putative aspartate race 34.2 39 0.0013 23.7 3.5 40 3-46 89-128 (268)
320 2vi8_A Serine hydroxymethyltra 34.2 31 0.0011 24.0 3.0 42 4-45 154-196 (405)
321 3uug_A Multiple sugar-binding 34.0 58 0.002 22.0 4.3 38 8-48 55-92 (330)
322 3q9s_A DNA-binding response re 33.6 87 0.003 20.7 5.1 79 3-84 71-152 (249)
323 2yc2_C IFT27, small RAB-relate 33.6 25 0.00085 22.0 2.2 16 39-54 131-146 (208)
324 2fvy_A D-galactose-binding per 33.6 1E+02 0.0035 20.3 5.6 41 5-48 51-92 (309)
325 1zj6_A ADP-ribosylation factor 33.5 34 0.0012 21.2 2.9 75 14-88 84-180 (187)
326 3huu_A Transcription regulator 33.5 87 0.003 20.9 5.2 40 4-48 74-114 (305)
327 1q98_A Thiol peroxidase, TPX; 33.4 82 0.0028 19.3 4.7 43 12-59 74-119 (165)
328 2yan_A Glutaredoxin-3; oxidore 33.2 61 0.0021 18.6 3.9 51 5-59 10-71 (105)
329 1wf3_A GTP-binding protein; GT 33.2 37 0.0013 23.8 3.3 24 30-53 105-130 (301)
330 3b1v_A Ferrous iron uptake tra 33.1 68 0.0023 22.1 4.6 78 8-85 75-163 (272)
331 2c0d_A Thioredoxin peroxidase 33.1 1.1E+02 0.0036 20.3 6.0 50 4-58 81-138 (221)
332 3sjy_A Translation initiation 33.1 95 0.0032 22.4 5.6 49 3-52 90-141 (403)
333 1jkx_A GART;, phosphoribosylgl 32.9 72 0.0025 21.5 4.6 41 3-47 15-57 (212)
334 3c01_E Surface presentation of 32.8 15 0.0005 22.5 0.9 21 27-47 27-47 (98)
335 3bc8_A O-phosphoseryl-tRNA(SEC 32.8 48 0.0017 25.2 4.0 41 3-44 185-232 (450)
336 3by5_A Cobalamin biosynthesis 32.7 43 0.0015 21.9 3.3 23 31-54 55-77 (155)
337 1iay_A ACC synthase 2, 1-amino 32.7 86 0.003 22.1 5.2 40 5-44 175-225 (428)
338 3gx8_A Monothiol glutaredoxin- 32.5 84 0.0029 19.0 5.1 59 5-69 9-82 (121)
339 3euc_A Histidinol-phosphate am 32.5 48 0.0016 22.8 3.7 43 3-45 147-197 (367)
340 2q0q_A ARYL esterase; SGNH hyd 32.5 92 0.0032 19.4 4.9 46 3-48 112-184 (216)
341 3crn_A Response regulator rece 32.5 69 0.0024 18.4 4.0 45 3-47 37-82 (132)
342 2f9i_B Acetyl-coenzyme A carbo 32.5 61 0.0021 23.1 4.3 34 14-47 121-163 (285)
343 1zpw_X Hypothetical protein TT 32.4 22 0.00074 21.0 1.6 29 15-43 4-32 (90)
344 3o63_A Probable thiamine-phosp 32.3 98 0.0034 21.3 5.3 53 4-58 48-113 (243)
345 3t1i_A Double-strand break rep 32.2 67 0.0023 24.2 4.7 22 3-24 61-82 (431)
346 1dar_A EF-G, elongation factor 32.2 55 0.0019 25.9 4.4 52 2-53 91-142 (691)
347 3heb_A Response regulator rece 32.2 79 0.0027 18.6 4.3 74 11-87 57-139 (152)
348 2h3h_A Sugar ABC transporter, 32.2 97 0.0033 20.8 5.2 40 6-48 50-90 (313)
349 1i4n_A Indole-3-glycerol phosp 32.1 1.3E+02 0.0044 21.0 6.5 62 4-67 115-178 (251)
350 3lwa_A Secreted thiol-disulfid 32.1 91 0.0031 19.2 6.9 50 4-57 83-140 (183)
351 2x7j_A 2-succinyl-5-enolpyruvy 32.1 83 0.0028 24.2 5.3 43 3-46 234-276 (604)
352 2lrt_A Uncharacterized protein 32.0 85 0.0029 18.9 7.7 64 4-71 59-124 (152)
353 2l2q_A PTS system, cellobiose- 32.0 62 0.0021 19.2 3.8 36 12-49 50-85 (109)
354 3b2n_A Uncharacterized protein 31.9 56 0.0019 18.8 3.5 75 3-82 39-119 (133)
355 3jte_A Response regulator rece 31.9 76 0.0026 18.3 5.0 44 3-48 37-85 (143)
356 3kax_A Aminotransferase, class 31.9 62 0.0021 22.2 4.2 41 4-45 148-194 (383)
357 1tt5_A APPBP1, amyloid protein 31.8 42 0.0014 26.0 3.6 34 13-48 124-157 (531)
358 3ceu_A Thiamine phosphate pyro 31.8 61 0.0021 21.4 4.0 52 5-58 19-71 (210)
359 2ioy_A Periplasmic sugar-bindi 31.8 1E+02 0.0035 20.3 5.2 40 6-48 50-90 (283)
360 3f6c_A Positive transcription 31.8 41 0.0014 19.2 2.9 42 4-47 37-81 (134)
361 3eod_A Protein HNR; response r 31.7 52 0.0018 18.7 3.3 43 3-47 41-86 (130)
362 3iav_A Propionyl-COA carboxyla 31.7 29 0.00099 27.2 2.6 32 15-46 333-373 (530)
363 1srv_A Protein (groel (HSP60 c 31.6 50 0.0017 21.6 3.4 19 10-29 51-69 (145)
364 3ruv_A Chaperonin, CPN; double 31.4 63 0.0021 25.0 4.5 50 3-57 270-322 (543)
365 2vbi_A Pyruvate decarboxylase; 31.2 55 0.0019 24.9 4.1 45 3-47 200-244 (566)
366 3kc2_A Uncharacterized protein 31.2 54 0.0018 23.8 3.9 41 2-43 34-74 (352)
367 2glj_A Probable M18-family ami 31.1 29 0.001 26.5 2.6 23 22-45 379-401 (461)
368 1kyq_A Met8P, siroheme biosynt 31.1 43 0.0015 23.7 3.3 36 13-50 106-144 (274)
369 2zyj_A Alpha-aminodipate amino 31.0 66 0.0023 22.4 4.3 42 4-45 153-201 (397)
370 2px0_A Flagellar biosynthesis 30.9 54 0.0018 23.0 3.8 59 14-72 135-193 (296)
371 1mvo_A PHOP response regulator 30.9 61 0.0021 18.5 3.6 45 3-47 37-82 (136)
372 4f82_A Thioredoxin reductase; 30.8 1.1E+02 0.0039 20.0 6.9 50 4-58 73-126 (176)
373 2gzm_A Glutamate racemase; enz 30.8 66 0.0023 22.2 4.2 41 3-46 55-95 (267)
374 3uma_A Hypothetical peroxiredo 30.6 1.1E+02 0.0037 19.7 6.2 49 6-59 84-136 (184)
375 1vjg_A Putative lipase from th 30.6 55 0.0019 20.8 3.6 45 3-48 120-175 (218)
376 3iyg_D T-complex protein 1 sub 30.5 1E+02 0.0036 23.5 5.6 42 3-49 263-309 (518)
377 3bc1_A RAS-related protein RAB 30.4 28 0.00094 21.3 2.0 15 39-53 126-140 (195)
378 1kng_A Thiol:disulfide interch 30.3 86 0.003 18.4 6.4 55 12-70 71-127 (156)
379 3kcq_A Phosphoribosylglycinami 30.2 56 0.0019 22.3 3.7 40 4-47 24-65 (215)
380 4hwg_A UDP-N-acetylglucosamine 30.0 65 0.0022 23.3 4.2 42 2-47 83-124 (385)
381 3kwp_A Predicted methyltransfe 30.0 1.2E+02 0.004 21.5 5.5 56 3-59 79-139 (296)
382 2hze_A Glutaredoxin-1; thiored 30.0 79 0.0027 18.4 4.0 56 1-59 7-74 (114)
383 1u0l_A Probable GTPase ENGC; p 30.0 35 0.0012 23.9 2.6 20 33-52 108-127 (301)
384 3sho_A Transcriptional regulat 29.9 1E+02 0.0036 19.2 8.3 81 3-86 30-112 (187)
385 4fbk_A DNA repair and telomere 29.9 1.3E+02 0.0044 23.1 6.0 22 3-24 105-126 (472)
386 1zuw_A Glutamate racemase 1; ( 29.8 42 0.0014 23.3 3.0 41 3-46 55-96 (272)
387 2w6k_A COBE; biosynthetic prot 29.8 33 0.0011 22.1 2.3 24 31-55 59-82 (145)
388 3out_A Glutamate racemase; str 29.7 31 0.0011 24.2 2.4 41 3-46 59-100 (268)
389 3qvl_A Putative hydantoin race 29.7 1.4E+02 0.0046 20.5 7.5 67 8-83 64-131 (245)
390 3dxv_A Alpha-amino-epsilon-cap 29.7 92 0.0032 22.1 4.9 43 4-46 189-241 (439)
391 3iyg_Q T-complex protein 1 sub 29.7 90 0.0031 23.8 5.1 49 4-57 262-313 (512)
392 2d00_A V-type ATP synthase sub 29.6 97 0.0033 18.8 5.9 40 10-50 43-83 (109)
393 2f9i_A Acetyl-coenzyme A carbo 29.6 67 0.0023 23.3 4.2 20 27-46 147-166 (327)
394 2xex_A Elongation factor G; GT 29.5 54 0.0018 26.0 3.9 51 2-52 89-139 (693)
395 3snk_A Response regulator CHEY 29.5 14 0.00047 21.7 0.4 73 7-82 53-129 (135)
396 1ass_A Thermosome; chaperonin, 29.4 1.1E+02 0.0039 19.5 5.2 53 2-59 61-116 (159)
397 3ko1_A Chaperonin; 9-fold symm 29.2 1E+02 0.0035 23.9 5.4 46 3-53 284-329 (553)
398 1q0p_A Complement factor B; VO 29.1 1E+02 0.0035 19.5 4.7 72 12-83 126-218 (223)
399 2qxy_A Response regulator; reg 29.0 74 0.0025 18.3 3.8 44 3-47 38-82 (142)
400 3dmy_A Protein FDRA; predicted 28.9 81 0.0028 24.2 4.7 68 5-74 53-125 (480)
401 3bzs_A ESCU; auto cleavage pro 28.9 26 0.00087 22.7 1.6 21 27-47 81-101 (137)
402 3ilh_A Two component response 28.8 86 0.003 18.0 5.2 79 3-83 45-136 (146)
403 2obb_A Hypothetical protein; s 28.8 96 0.0033 19.6 4.4 43 3-47 30-72 (142)
404 3t7y_A YOP proteins translocat 28.8 32 0.0011 20.9 2.0 21 27-47 42-62 (97)
405 1z2a_A RAS-related protein RAB 28.7 33 0.0011 20.4 2.1 16 39-54 108-123 (168)
406 3dc7_A Putative uncharacterize 28.7 89 0.0031 20.0 4.4 46 3-48 117-182 (232)
407 3b1s_B Flagellar biosynthetic 34.8 12 0.00041 22.4 0.0 18 28-45 28-45 (87)
408 3h7f_A Serine hydroxymethyltra 28.6 42 0.0014 24.3 3.0 45 3-47 175-220 (447)
409 1y7e_A Probable M18-family ami 28.6 24 0.00081 27.0 1.6 22 23-45 377-398 (458)
410 1zzo_A RV1677; thioredoxin fol 28.6 84 0.0029 17.7 6.4 55 13-71 56-112 (136)
411 3p9d_E T-complex protein 1 sub 28.4 56 0.0019 25.4 3.8 50 3-57 307-359 (562)
412 1jw9_B Molybdopterin biosynthe 28.4 57 0.002 22.2 3.5 33 13-47 121-153 (249)
413 2wvg_A PDC, pyruvate decarboxy 28.4 62 0.0021 24.6 4.0 45 3-47 200-244 (568)
414 3ujp_A Mn transporter subunit; 28.3 71 0.0024 22.8 4.1 63 22-85 222-296 (307)
415 2f9y_A Acetyl-COA carboxylase, 28.3 72 0.0025 23.3 4.2 19 28-46 162-180 (339)
416 4hn9_A Iron complex transport 28.3 1.4E+02 0.0048 20.7 5.7 46 8-59 111-165 (335)
417 3cu5_A Two component transcrip 28.3 93 0.0032 18.1 5.9 46 3-50 39-87 (141)
418 1kao_A RAP2A; GTP-binding prot 28.1 38 0.0013 20.0 2.3 22 32-53 100-121 (167)
419 2xmo_A LMO2642 protein; phosph 28.1 87 0.003 22.6 4.6 49 3-52 82-137 (443)
420 3jtx_A Aminotransferase; NP_28 28.0 51 0.0017 22.9 3.2 40 5-45 161-206 (396)
421 2jli_A YSCU, YOP proteins tran 28.0 27 0.00094 22.2 1.6 21 27-47 71-91 (123)
422 3ors_A N5-carboxyaminoimidazol 27.9 66 0.0023 21.4 3.6 36 14-49 4-40 (163)
423 3bbl_A Regulatory protein of L 27.8 1.3E+02 0.0045 19.8 5.5 40 4-48 55-95 (287)
424 2dwu_A Glutamate racemase; iso 27.8 1.5E+02 0.0052 20.4 6.0 41 3-46 59-99 (276)
425 2jlj_A YSCU, YOP proteins tran 27.8 27 0.00093 22.8 1.6 21 27-47 80-100 (144)
426 3p94_A GDSL-like lipase; serin 27.8 1.1E+02 0.0038 18.8 5.3 44 3-46 104-161 (204)
427 2rcn_A Probable GTPase ENGC; Y 27.7 30 0.001 25.5 2.0 25 28-52 148-172 (358)
428 2lkc_A Translation initiation 27.6 40 0.0014 20.4 2.4 56 34-89 101-174 (178)
429 1sff_A 4-aminobutyrate aminotr 27.6 73 0.0025 22.4 4.0 43 4-46 186-239 (426)
430 3u9r_B MCC beta, methylcrotony 27.4 51 0.0017 26.0 3.4 31 15-45 358-392 (555)
431 3tzt_A Glycosyl transferase fa 27.4 86 0.003 21.7 4.3 32 13-45 35-66 (276)
432 2gfq_A UPF0204 protein PH0006; 27.4 93 0.0032 22.5 4.6 43 6-48 254-298 (298)
433 2ehb_D CBL-interacting serine/ 27.4 38 0.0013 21.8 2.3 72 20-91 39-128 (143)
434 1gd9_A Aspartate aminotransfer 27.4 67 0.0023 22.2 3.8 40 5-45 153-198 (389)
435 2dri_A D-ribose-binding protei 27.3 1.3E+02 0.0044 19.6 5.1 40 6-48 50-90 (271)
436 4eu1_A Mitochondrial aspartate 27.3 1.2E+02 0.0042 21.1 5.2 42 4-45 172-221 (409)
437 1ozh_A ALS, acetolactate synth 27.2 71 0.0024 24.3 4.1 44 3-46 198-241 (566)
438 1uqr_A 3-dehydroquinate dehydr 27.1 50 0.0017 21.9 2.9 65 26-90 29-95 (154)
439 3d8u_A PURR transcriptional re 27.1 1.2E+02 0.0042 19.6 4.9 39 5-48 51-90 (275)
440 1gml_A T-complex protein 1 sub 27.0 1.3E+02 0.0045 19.5 5.3 52 2-58 67-121 (178)
441 1rxw_A Flap structure-specific 27.0 64 0.0022 23.1 3.7 34 22-56 125-160 (336)
442 1ky3_A GTP-binding protein YPT 27.0 37 0.0013 20.5 2.1 14 39-52 117-130 (182)
443 2x7x_A Sensor protein; transfe 27.0 1.5E+02 0.0051 20.0 5.7 41 6-48 55-95 (325)
444 4evm_A Thioredoxin family prot 26.9 89 0.0031 17.5 6.2 42 30-71 72-115 (138)
445 1aba_A Glutaredoxin; electron 26.9 85 0.0029 17.2 5.7 29 31-59 19-58 (87)
446 1jwy_B Dynamin A GTPase domain 26.8 38 0.0013 23.1 2.4 49 4-52 160-210 (315)
447 1s8n_A Putative antiterminator 26.8 1.2E+02 0.0041 18.9 7.9 70 3-72 48-117 (205)
448 1jg8_A L-ALLO-threonine aldola 26.7 66 0.0022 21.8 3.6 42 4-45 118-171 (347)
449 1svi_A GTP-binding protein YSX 26.7 1E+02 0.0035 18.9 4.3 71 15-85 107-194 (195)
450 3n5m_A Adenosylmethionine-8-am 26.6 68 0.0023 23.0 3.8 43 4-46 203-255 (452)
451 1srr_A SPO0F, sporulation resp 26.6 64 0.0022 18.1 3.1 20 4-23 38-57 (124)
452 1fov_A Glutaredoxin 3, GRX3; a 26.6 77 0.0026 16.7 4.7 29 31-59 16-50 (82)
453 2b4a_A BH3024; flavodoxin-like 26.6 96 0.0033 17.8 5.0 79 3-85 49-130 (138)
454 3hrz_D Complement factor B; se 26.4 1.6E+02 0.0055 22.7 6.1 73 14-86 356-449 (741)
455 2np0_B Synaptotagmin-2; botuli 26.4 49 0.0017 15.2 2.0 19 72-90 7-25 (26)
456 3a8u_X Omega-amino acid--pyruv 26.4 67 0.0023 23.0 3.7 42 4-45 207-258 (449)
457 1dbw_A Transcriptional regulat 26.4 93 0.0032 17.5 5.6 75 3-82 37-117 (126)
458 2atv_A RERG, RAS-like estrogen 26.4 1.2E+02 0.0041 18.8 4.7 23 32-54 124-146 (196)
459 2fn4_A P23, RAS-related protei 26.2 34 0.0012 20.7 1.9 18 36-53 110-127 (181)
460 3kcn_A Adenylate cyclase homol 26.2 1E+02 0.0036 18.0 5.3 46 3-50 37-86 (151)
461 3tfu_A Adenosylmethionine-8-am 26.1 71 0.0024 23.4 3.9 43 4-46 222-274 (457)
462 4dcu_A GTP-binding protein ENG 26.1 80 0.0027 23.3 4.2 82 4-86 95-185 (456)
463 3i4j_A Aminotransferase, class 26.0 65 0.0022 22.9 3.5 43 4-46 178-231 (430)
464 3fdb_A Beta C-S lyase, putativ 25.9 1.2E+02 0.0041 20.7 4.8 41 4-45 142-188 (377)
465 1meo_A Phosophoribosylglycinam 25.9 1.3E+02 0.0046 20.1 5.0 40 4-47 16-57 (209)
466 1z7d_A Ornithine aminotransfer 25.9 1.2E+02 0.004 21.9 4.9 43 4-46 203-252 (433)
467 3k53_A Ferrous iron transport 25.7 1.5E+02 0.0052 19.8 6.9 78 9-86 77-166 (271)
468 3op7_A Aminotransferase class 25.6 1.2E+02 0.004 20.8 4.8 40 5-45 147-192 (375)
469 3e61_A Putative transcriptiona 25.6 89 0.0031 20.4 4.0 39 4-48 55-94 (277)
470 2fn9_A Ribose ABC transporter, 25.5 1.5E+02 0.005 19.5 5.4 39 6-47 51-90 (290)
471 2dy1_A Elongation factor G; tr 25.5 95 0.0032 24.4 4.7 50 3-52 89-138 (665)
472 3ruy_A Ornithine aminotransfer 25.3 68 0.0023 22.3 3.5 41 5-46 175-222 (392)
473 3exc_X Uncharacterized protein 25.2 53 0.0018 19.4 2.5 26 15-40 4-29 (91)
474 3nl6_A Thiamine biosynthetic b 25.2 1.7E+02 0.0058 22.6 6.0 54 3-58 29-86 (540)
475 3pvv_A Chromosomal replication 25.0 8.1 0.00028 23.6 -1.3 39 47-85 51-96 (101)
476 1zod_A DGD, 2,2-dialkylglycine 25.0 64 0.0022 22.9 3.4 43 4-46 191-243 (433)
477 1v95_A Nuclear receptor coacti 25.0 1.4E+02 0.0047 19.0 5.4 48 2-51 24-71 (130)
478 3l44_A Glutamate-1-semialdehyd 24.9 1E+02 0.0035 21.8 4.4 42 4-45 191-241 (434)
479 1n2z_A Vitamin B12 transport p 24.9 1.5E+02 0.0051 19.4 5.5 49 7-59 51-108 (245)
480 2hjg_A GTP-binding protein ENG 24.9 59 0.002 23.8 3.2 83 3-86 74-165 (436)
481 2khp_A Glutaredoxin; thioredox 24.8 92 0.0032 17.0 5.5 42 15-58 7-54 (92)
482 2rgy_A Transcriptional regulat 24.8 1.3E+02 0.0045 19.8 4.8 39 5-48 59-98 (290)
483 2iks_A DNA-binding transcripti 24.7 1.1E+02 0.0037 20.3 4.3 39 5-47 68-107 (293)
484 1pii_A N-(5'phosphoribosyl)ant 24.6 1.5E+02 0.005 22.6 5.4 62 4-67 122-184 (452)
485 2ls5_A Uncharacterized protein 30.4 16 0.00054 22.3 0.0 56 12-71 67-125 (159)
486 2uyg_A 3-dehydroquinate dehydr 24.5 55 0.0019 21.5 2.7 67 25-91 26-95 (149)
487 3rtk_A 60 kDa chaperonin 2; he 24.5 56 0.0019 25.5 3.1 23 4-26 233-255 (546)
488 2qbu_A Precorrin-2 methyltrans 24.4 1.5E+02 0.0052 19.4 5.4 55 5-59 87-144 (232)
489 2dkj_A Serine hydroxymethyltra 24.4 58 0.002 22.6 3.0 41 4-45 154-196 (407)
490 3td9_A Branched chain amino ac 24.4 1.4E+02 0.0049 20.3 5.0 40 5-47 73-112 (366)
491 1dc7_A NTRC, nitrogen regulati 24.4 52 0.0018 18.3 2.3 79 3-81 37-116 (124)
492 1wms_A RAB-9, RAB9, RAS-relate 24.3 41 0.0014 20.3 1.9 48 39-86 115-174 (177)
493 2i0x_A Hypothetical protein PF 24.2 29 0.00099 20.3 1.2 27 16-43 2-28 (85)
494 2pl1_A Transcriptional regulat 24.2 99 0.0034 17.1 4.8 45 3-47 34-79 (121)
495 3llu_A RAS-related GTP-binding 24.2 29 0.00098 21.9 1.2 14 39-52 128-141 (196)
496 2ct6_A SH3 domain-binding glut 24.1 1.2E+02 0.004 17.8 4.7 26 31-56 29-60 (111)
497 3c5c_A RAS-like protein 12; GD 24.1 57 0.002 20.3 2.7 15 39-53 126-140 (187)
498 2x7j_A 2-succinyl-5-enolpyruvy 24.1 1.2E+02 0.0041 23.3 4.9 54 31-84 537-594 (604)
499 2qvg_A Two component response 24.1 1.1E+02 0.0037 17.5 5.6 45 3-47 43-96 (143)
500 1xvq_A Thiol peroxidase; thior 24.0 99 0.0034 19.2 3.8 44 12-60 74-119 (175)
No 1
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=99.93 E-value=9.2e-26 Score=148.38 Aligned_cols=86 Identities=31% Similarity=0.574 Sum_probs=80.5
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVK 81 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~ 81 (91)
.++|+++|++|++++||+|+|++|.+++++++.+|++++|||++++|+.+||+|||++++++++.+.+++++++.|+++.
T Consensus 36 ~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~Gk~~~vs~vaI~d~~~~~~~~~~~~ 115 (122)
T 3o85_A 36 ANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNALGRACNVSVPTIVASIGKHDALGNVVAEIV 115 (122)
T ss_dssp HHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHHHHHHTTCSSCCSEEEECCCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCCCCEEEEEEEcccchHHHHHHHH
Confidence 58999999999999999999999977789999999999999999999999999999999888777777777999999999
Q ss_pred HHhhcC
Q psy6265 82 QEIGAL 87 (91)
Q Consensus 82 ~~~~~~ 87 (91)
+.++++
T Consensus 116 ~~i~~~ 121 (122)
T 3o85_A 116 GKVEAL 121 (122)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 999875
No 2
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.93 E-value=4.3e-27 Score=153.36 Aligned_cols=83 Identities=24% Similarity=0.473 Sum_probs=79.8
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVK 81 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~ 81 (91)
.|+|+++|++|+++|||||+|++|.+++.+|+.+|++++|||++++||.+||++||+++++++++++.+.+++++|++++
T Consensus 30 ~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG~a~G~k~~a~vai~d~~~ed~~~l~~l~ 109 (113)
T 3jyw_G 30 LNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLV 109 (113)
T ss_dssp HHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTHHHHCSSSCCSEEEECSCSSTTTTTHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHCCCCcEEEEEEeCCHHhHHHHHHHH
Confidence 58999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHh
Q psy6265 82 QEI 84 (91)
Q Consensus 82 ~~~ 84 (91)
+.+
T Consensus 110 e~~ 112 (113)
T 3jyw_G 110 STI 112 (113)
T ss_dssp TTT
T ss_pred Hhh
Confidence 876
No 3
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=99.93 E-value=2.4e-25 Score=145.96 Aligned_cols=86 Identities=35% Similarity=0.673 Sum_probs=76.6
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecC-----------
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKST----------- 70 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~----------- 70 (91)
.++|+++|++|+++|||||+|++|.+++++++.+|++++|||++++|+.+||+|||++++++++++.++
T Consensus 25 ~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g~k~~~s~v~I~d~g~a~~~~~~~~ 104 (121)
T 2lbw_A 25 VKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKE 104 (121)
T ss_dssp HHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHHHTCSSCCSEEEECCSCTTGGGCSSTH
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHHhCCCCCEEEEEEEcCcchHHHHHHHH
Confidence 589999999999999999999999878999999999999999999999999999998876655555444
Q ss_pred chHHHHHHHHHHHhhcC
Q psy6265 71 ESVAELYEEVKQEIGAL 87 (91)
Q Consensus 71 ~~~~~~~~~~~~~~~~~ 87 (91)
.+|.+.|+++.+++++|
T Consensus 105 ~~y~~~y~~~~~~~~~~ 121 (121)
T 2lbw_A 105 EEYKESFNEVVKEVQAL 121 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 45889999999999875
No 4
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.92 E-value=1.4e-24 Score=141.91 Aligned_cols=86 Identities=23% Similarity=0.470 Sum_probs=78.2
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVK 81 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~ 81 (91)
+++|+++|++|++++||+|+|++|.+++++++.+|++++|||++++|+.+||+|||++++++++.+.+.|..+..++.+.
T Consensus 34 ~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~vaI~d~g~a~~~~~~l~ 113 (120)
T 1vq8_F 34 TNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVTDAGEADADVEDIA 113 (120)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHHHHTTCSSCCSEEEESSCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEEEEEecCchHHHHHHHHH
Confidence 58999999999999999999999977889999999999999999999999999999996666666666677799999999
Q ss_pred HHhhcC
Q psy6265 82 QEIGAL 87 (91)
Q Consensus 82 ~~~~~~ 87 (91)
+++++|
T Consensus 114 ~~~~~l 119 (120)
T 1vq8_F 114 DKVEEL 119 (120)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999876
No 5
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.91 E-value=1.2e-24 Score=142.98 Aligned_cols=87 Identities=34% Similarity=0.607 Sum_probs=78.2
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVK 81 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~ 81 (91)
+++|+++|++|++++||+|+|++|.+++++++.+|++++|||++++|+.+||+|||+++.++++.+.+.+..+..++.+.
T Consensus 33 ~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG~a~G~~~~~~~vaI~d~g~a~~~~~~l~ 112 (124)
T 2fc3_A 33 TNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEPGDAETLVREIV 112 (124)
T ss_dssp HHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEECcchHHHHHHHHH
Confidence 58999999999999999999999977889999999999999999999999999999996655556666677789999999
Q ss_pred HHhhcCC
Q psy6265 82 QEIGALP 88 (91)
Q Consensus 82 ~~~~~~~ 88 (91)
+++++++
T Consensus 113 ~~~~~l~ 119 (124)
T 2fc3_A 113 EKVKELR 119 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 9998764
No 6
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.91 E-value=1.9e-24 Score=141.02 Aligned_cols=87 Identities=32% Similarity=0.609 Sum_probs=77.9
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVK 81 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~ 81 (91)
.++|+++|++|++++||+|+|++|.+++++++.+|++++|||++++|+.+||+|||++++++++.+.+.|..+..++.+.
T Consensus 32 ~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~vaI~d~g~a~~~~~~l~ 111 (119)
T 1rlg_A 32 TNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAIINEGELRKELGSLV 111 (119)
T ss_dssp HHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCCCCeEEEEEecCchHHHHHHHHH
Confidence 58999999999999999999999977889999999999999999999999999999996555555556677789999999
Q ss_pred HHhhcCC
Q psy6265 82 QEIGALP 88 (91)
Q Consensus 82 ~~~~~~~ 88 (91)
+.+++|.
T Consensus 112 ~~~~~l~ 118 (119)
T 1rlg_A 112 EKIKGLQ 118 (119)
T ss_dssp HHHHTTT
T ss_pred HHHHHhh
Confidence 9998873
No 7
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=99.91 E-value=1.8e-24 Score=144.38 Aligned_cols=87 Identities=34% Similarity=0.619 Sum_probs=76.1
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCce-EEEEEecC-chHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPC-ICVIVKST-ESVAELYEE 79 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~-~v~~i~~~-~~~~~~~~~ 79 (91)
+|+|+|+|++|+++|||||+|++|.+++++++.+|++++|||++++|+.+||+|||+++++ ++++++++ +++...++.
T Consensus 37 ~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~vaI~d~~~s~~~~l~~~ 116 (134)
T 2ale_A 37 ANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQIYA 116 (134)
T ss_dssp HHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEECCTTCTTHHHHHH
T ss_pred chHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEEEEEEcCChHHHHHHHHH
Confidence 5899999999999999999999997789999999999999999999999999999999884 45555543 367888888
Q ss_pred HHHHhhcCC
Q psy6265 80 VKQEIGALP 88 (91)
Q Consensus 80 ~~~~~~~~~ 88 (91)
+.+.++.++
T Consensus 117 i~~~~~~~~ 125 (134)
T 2ale_A 117 VKDKIETLL 125 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 888877654
No 8
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=99.91 E-value=2.9e-24 Score=155.69 Aligned_cols=86 Identities=20% Similarity=0.436 Sum_probs=82.6
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVK 81 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~ 81 (91)
.++|+++|++|+++|||||+|++|++++.+|+.+|++++|||++++|+++||+++|+++++++++++.++|+++.|++++
T Consensus 129 vneVtKaIekgKAqLVVIA~DvdPielv~~LPaLCee~~VPY~~V~sK~~LG~avGrKt~s~Vaitdv~~EDk~al~kLv 208 (255)
T 4a17_F 129 LNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVKGKAALGKLVNKKTATAVALTEVRNEDKAKLQQFS 208 (255)
T ss_dssp HHHHHHHHHTSCCSEEEEESCCSSTHHHHHHHHHHHHTTCCEEEESCHHHHHHHHTSSCCSEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCcceEEEeeccCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q psy6265 82 QEIGAL 87 (91)
Q Consensus 82 ~~~~~~ 87 (91)
+.+++.
T Consensus 209 e~iktn 214 (255)
T 4a17_F 209 ELFKTN 214 (255)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998763
No 9
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.91 E-value=3e-24 Score=140.57 Aligned_cols=85 Identities=34% Similarity=0.602 Sum_probs=73.3
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVK 81 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~ 81 (91)
.++|+++|++|++++||||+|++|.+++++++.+|++++|||++++|+.+||+|||++++++++.+.+.+..+. ++++.
T Consensus 34 ~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~vaI~d~g~a~~-l~~l~ 112 (120)
T 1xbi_A 34 ANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGDAEE-LKVLI 112 (120)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEECSCHHH-HHHHH
T ss_pred HHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCCCEEEEEEeccchHHH-HHHHH
Confidence 58999999999999999999999977899999999999999999999999999999995544444444454444 99999
Q ss_pred HHhhcC
Q psy6265 82 QEIGAL 87 (91)
Q Consensus 82 ~~~~~~ 87 (91)
+.+++|
T Consensus 113 ~~i~~l 118 (120)
T 1xbi_A 113 EKVNVL 118 (120)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998875
No 10
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=99.90 E-value=2.1e-24 Score=145.68 Aligned_cols=86 Identities=31% Similarity=0.641 Sum_probs=77.3
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCce-EEEEEecC-chHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPC-ICVIVKST-ESVAELYEE 79 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~-~v~~i~~~-~~~~~~~~~ 79 (91)
+|||+|+|++|+++|||||+|++|.+++++++.+|++++|||++++|+.+||+|||+++++ ++++++.+ .++.+.+++
T Consensus 55 ~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk~eLG~a~Gk~~~vs~vaI~~~~~s~i~~~~~~ 134 (144)
T 2jnb_A 55 ANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQS 134 (144)
T ss_dssp HHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEESCSHHHHHHHTCSSCCSEEEEECCTTCTTHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCCCceEEEEEEeCCcHHHHHHHHH
Confidence 5899999999999999999999997789999999999999999999999999999999886 46666543 468999999
Q ss_pred HHHHhhcC
Q psy6265 80 VKQEIGAL 87 (91)
Q Consensus 80 ~~~~~~~~ 87 (91)
+.++|+.|
T Consensus 135 ~~~~i~~l 142 (144)
T 2jnb_A 135 IQQSIERL 142 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
No 11
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=99.90 E-value=3.2e-24 Score=155.66 Aligned_cols=86 Identities=24% Similarity=0.454 Sum_probs=82.0
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVK 81 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~ 81 (91)
+++|+++|++|+++|||||+|++|.+++.+|+.+|++++|||++++|+.+||+|||+++++++++++.+.+++++|++++
T Consensus 136 ~keV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V~sK~eLG~A~Gkk~~s~VAItD~g~eDk~al~kLv 215 (256)
T 3izc_H 136 LNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLV 215 (256)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEESSCCSCCHHHHHHH
T ss_pred HHHHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCcEEEEeecCChhhHHHHHHHH
Confidence 58999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q psy6265 82 QEIGAL 87 (91)
Q Consensus 82 ~~~~~~ 87 (91)
+.+++.
T Consensus 216 e~iktn 221 (256)
T 3izc_H 216 STIDAN 221 (256)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998753
No 12
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=99.90 E-value=1.6e-23 Score=139.71 Aligned_cols=86 Identities=34% Similarity=0.616 Sum_probs=76.6
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCce-EEEEEecCc-hHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPC-ICVIVKSTE-SVAELYEE 79 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~-~v~~i~~~~-~~~~~~~~ 79 (91)
+++|+++|++|++++||+|+|++|.+++++++.+|++++|||++++|+.+||+|||+++++ ++++++.++ ++.+.|++
T Consensus 46 ~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG~a~G~~~~v~~vaI~d~~~s~i~~~~~~ 125 (135)
T 2aif_A 46 ANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVSRPVIAAAITSKDGSSLSSQITE 125 (135)
T ss_dssp HHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEECCTTCTTHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHHHHhCCCCcEEEEEEEcCCcHHHHHHHHH
Confidence 5899999999999999999999997777999999999999999999999999999999887 466665543 57899999
Q ss_pred HHHHhhcC
Q psy6265 80 VKQEIGAL 87 (91)
Q Consensus 80 ~~~~~~~~ 87 (91)
+.++|+.|
T Consensus 126 ~~~~~~~~ 133 (135)
T 2aif_A 126 LKDQIEQI 133 (135)
T ss_dssp HHHTTCC-
T ss_pred HHHHHHHH
Confidence 99999876
No 13
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.89 E-value=1.8e-23 Score=138.29 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=73.1
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCC----------C-C-ceEEEEEec
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGR----------K-K-PCICVIVKS 69 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~----------~-~-~~~v~~i~~ 69 (91)
.+||+|+|++|+++|||||+|++|.+++++|+.+|++++|||++++|+.+||+|||+ + + ++++++++.
T Consensus 29 ~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G~~k~d~~g~~rk~v~~s~vaI~d~ 108 (126)
T 2xzm_U 29 LHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLGHFTANAKGEIKKVKGCSSLAIRKY 108 (126)
T ss_dssp HHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHHTCCCBCTTCCBSCCCCCCEEEESSC
T ss_pred HHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCCCccccccCcCceeeEEEEEEEec
Confidence 589999999999999999999998788999999999999999999999999999997 3 3 455666666
Q ss_pred Cch-HHHHHHHHHHHhh
Q psy6265 70 TES-VAELYEEVKQEIG 85 (91)
Q Consensus 70 ~~~-~~~~~~~~~~~~~ 85 (91)
+++ .+.+++.+++.++
T Consensus 109 g~~~~~~~~~~l~~~~~ 125 (126)
T 2xzm_U 109 APEITEDEKKIIEGALK 125 (126)
T ss_dssp CTTCCHHHHHHHTTSCB
T ss_pred CcccCHHHHHHHHHHhc
Confidence 666 4449999998876
No 14
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=99.89 E-value=2.9e-23 Score=150.32 Aligned_cols=86 Identities=24% Similarity=0.476 Sum_probs=83.1
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVK 81 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~ 81 (91)
+|+|+++|++++++||+||.|++|.+++.+|+.||+++||||+++.++.+||+++|+++++++++++.+.+++++|++++
T Consensus 132 vneVTklVE~kKAqLVVIA~DVdPiElV~fLPaLC~k~gVPY~iVk~KarLG~~vgrKtct~Va~t~v~~eDk~aLakLv 211 (258)
T 3iz5_H 132 LNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKIL 211 (258)
T ss_dssp HHHHHHHHHTTCEEEEEEESCCSSTHHHHHHHHHHTTTTCCEEEESCHHHHHHHTTCSSCCSEEEEESCCSCCHHHHHHH
T ss_pred cHHHHHHHHcCcceEEEEeCCCChHHHHhHHHHHHHhcCCCeEEECCHHHHHHHhCCccceEEEEEecCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q psy6265 82 QEIGAL 87 (91)
Q Consensus 82 ~~~~~~ 87 (91)
+.+++.
T Consensus 212 eairtn 217 (258)
T 3iz5_H 212 EAIKAN 217 (258)
T ss_dssp HHHTTT
T ss_pred HHHHhH
Confidence 999864
No 15
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.89 E-value=1.5e-23 Score=152.99 Aligned_cols=86 Identities=26% Similarity=0.460 Sum_probs=80.5
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVK 81 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~ 81 (91)
+++|+++|++|+++|||||+|++|++++.+++.+|++++|||++++|+.+||+|||+++++++++++.+.++++.+++++
T Consensus 140 ~keV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~eLG~A~Gkk~~s~VAItD~G~eD~~al~klv 219 (266)
T 2zkr_f 140 VNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSEDKGALAKLV 219 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCHHHHHHHHTSSCCSEEEETTCSSTTTTHHHHHH
T ss_pred hHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCceEEEEeecCcchHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred HHhhcC
Q psy6265 82 QEIGAL 87 (91)
Q Consensus 82 ~~~~~~ 87 (91)
+.+++.
T Consensus 220 e~ik~~ 225 (266)
T 2zkr_f 220 EAIRTN 225 (266)
T ss_dssp HHHC--
T ss_pred HHHHHh
Confidence 988753
No 16
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.89 E-value=4.2e-23 Score=127.27 Aligned_cols=65 Identities=23% Similarity=0.347 Sum_probs=61.2
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEE
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIV 67 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i 67 (91)
.+||+++|++|+++|||||+|++| +++++++.+|++++|||++++|+.+||+|||++++++++.+
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~Gk~~~~~~~ai 80 (82)
T 3v7e_A 16 TKQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAI 80 (82)
T ss_dssp HHHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHHHHHHTCSSCCSEEEE
T ss_pred HHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999999 79999999999999999999999999999999988776554
No 17
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.86 E-value=3.4e-22 Score=134.74 Aligned_cols=85 Identities=18% Similarity=0.277 Sum_probs=76.0
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHh--cCCCCEEEeCCHhHHhhHhCCC--------C---ceEEEEEe
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCE--DKDIPYCYVPSKKDIGEALGRK--------K---PCICVIVK 68 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~--~~~IP~~~~~sk~eLG~a~G~~--------~---~~~v~~i~ 68 (91)
.||++|+|++|+++|||||+|++|.+++++++.+|+ +++|||++++|+.+||+|||.. + .++++++.
T Consensus 45 ~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~s~keLG~a~Gl~k~d~~Gk~rkVv~~s~v~I~ 124 (143)
T 3u5c_M 45 LRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGEWAGLGKIDREGNARKVVGASVVVVK 124 (143)
T ss_dssp HHHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCCSCHHHHHHHSSCCCCSSSSCCSCCCCCSCEEES
T ss_pred HHHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEECCHHHHhHHhCcCccccCCCccccceeEEEEEc
Confidence 589999999999999999999997789999999999 9999999999999999999963 2 35577777
Q ss_pred cCchHHHHHHHHHHHhhc
Q psy6265 69 STESVAELYEEVKQEIGA 86 (91)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~ 86 (91)
+.|+.++.++.|.++++.
T Consensus 125 d~G~~~~~~~~l~~~~~~ 142 (143)
T 3u5c_M 125 NWGAETDELSMIMEHFSQ 142 (143)
T ss_dssp CCCCCSHHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHhc
Confidence 777778999999998875
No 18
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.86 E-value=8.8e-22 Score=125.29 Aligned_cols=66 Identities=15% Similarity=0.356 Sum_probs=61.0
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEe
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVK 68 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~ 68 (91)
+++|+++|++|++++||+|+|++| ..+++++.+|+.++|||++++|++|||+|||++.++++++++
T Consensus 24 ~~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~~~~~~ai~D 89 (101)
T 3v7q_A 24 EDLVIKEIRNARAKLVLLTEDASS-NTAKKVTDKCNYYKVPYKKVESRAVLGRSIGKEARVVVAVTD 89 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCH-HHHHHHHHHHHHTTCCEEEESCHHHHHHHTTSSCCSEEEECC
T ss_pred hhhhHHHHhcCceeEEEEeccccc-cchhhhcccccccCCCeeeechHHHHHhhhCccceEEEEEec
Confidence 579999999999999999999999 578999999999999999999999999999999887766664
No 19
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.85 E-value=9.5e-22 Score=124.95 Aligned_cols=66 Identities=20% Similarity=0.321 Sum_probs=60.6
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEe
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVK 68 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~ 68 (91)
+++|+++|++|++++||+|+|++| +.+++++.+|++++|||++++|+.|||+|||++.++++++++
T Consensus 23 ~~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~ip~~~~~s~~eLG~a~Gk~~~~~vai~d 88 (101)
T 3on1_A 23 EEQVVKAVQNGQVTLVILSSDAGI-HTKKKLLDKCGSYQIPVKVVGNRQMLGRAIGKHERVVIGVKD 88 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHHHHHTTSSCCSEEEECC
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCcCeEEEEEEC
Confidence 589999999999999999999999 578999999999999999999999999999999777666644
No 20
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=99.85 E-value=1.1e-21 Score=127.30 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=62.2
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe-CCHhHHhhHhCCCCceEEEEEecCch
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV-PSKKDIGEALGRKKPCICVIVKSTES 72 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~~~~~~v~~i~~~~~ 72 (91)
++||+++|++|+++|||||+|++| +++++++.+|+.++|||+++ +|+.|||+|||+.++++++.+.++|+
T Consensus 31 ~~~t~kai~~gkakLVilA~D~~~-~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~~~v~~vaI~D~G~ 101 (112)
T 3iz5_f 31 YKTVLKTLRSSLGKLIILANNCPP-LRKSEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPGD 101 (112)
T ss_dssp HHHHHHHHHTTCCSEEEECSCCCH-HHHHHHHHHHHHTTCCEECCCCTTCTHHHHHCTTCSSCEEEEECCSC
T ss_pred HHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCcEEEeCCCHHHHHHHhCCccceEEEEEeccch
Confidence 589999999999999999999998 68999999999999999999 99999999999998866444444443
No 21
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=99.85 E-value=1.3e-21 Score=125.35 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=61.6
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEE-EeCCHhHHhhHhCCCCceE-EEEEecC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYC-YVPSKKDIGEALGRKKPCI-CVIVKST 70 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~-~~~sk~eLG~a~G~~~~~~-v~~i~~~ 70 (91)
.+||+++|++|++++||+|+|++| +.+++++.+|++++|||+ +++|+.|||+|||++++++ ++++|.+
T Consensus 27 ~~~v~kai~~gkaklVilA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~Gk~~~~~~vaI~D~G 96 (105)
T 3u5e_c 27 YKSTVKSLRQGKSKLIIIAANTPV-LRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAG 96 (105)
T ss_dssp HHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEEECC
T ss_pred HHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCCHHHHHHHhCCcccEEEEEEeccc
Confidence 589999999999999999999988 688999999999999999 7999999999999998875 5555554
No 22
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=99.85 E-value=1.6e-21 Score=124.67 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=61.2
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEE-EeCCHhHHhhHhCCCCceE-EEEEecC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYC-YVPSKKDIGEALGRKKPCI-CVIVKST 70 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~-~~~sk~eLG~a~G~~~~~~-v~~i~~~ 70 (91)
.++|+++|++|++++||+|+|++| ..+++++.+|++++|||+ |++|+.|||+|||++++++ ++++|.+
T Consensus 27 ~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~D~G 96 (104)
T 4a18_G 27 YKSTIKAIRNGTAKLVFISNNCPT-VRKSEIEYYASLAQISIHHFVGSNVELGTACGKYHRCSTMAILDAG 96 (104)
T ss_dssp HHHHHHHHHHTCCCEEEECTTSCH-HHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEEECS
T ss_pred HHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCcEEEecCCHHHHHHHhCCccCEEEEEEeccc
Confidence 589999999999999999999999 578999999999999999 7999999999999998865 5555544
No 23
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.84 E-value=5.6e-21 Score=121.01 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=60.5
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEE-eCCHhHHhhHhCCCCceEEEEEecCch
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCY-VPSKKDIGEALGRKKPCICVIVKSTES 72 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~~~~v~~i~~~~~ 72 (91)
+++|+++|++|++++||+|+|+++ +++++++.+|++++||++. ++|++|||+|||++++++++.+.+.|.
T Consensus 20 ~~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~d~g~ 90 (99)
T 3j21_Z 20 SNETIRLAKTGGAKLIIVAKNAPK-EIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGE 90 (99)
T ss_dssp HHHHHHHHHHTCCSEEEEECCCCH-HHHHHHHHHHHHTTCCEEEECCCSCGGGGTTCSTTCSEEEEESSCSS
T ss_pred HHHHHHHHHcCCccEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCCHHHHHHHHCCCCCEEEEEEEccch
Confidence 589999999999999999999876 7899999999999999755 599999999999998765555555444
No 24
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.84 E-value=1.1e-20 Score=119.84 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=60.4
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe-CCHhHHhhHhCCCCce-EEEEEecC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV-PSKKDIGEALGRKKPC-ICVIVKST 70 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~~~~~-~v~~i~~~ 70 (91)
+++|+++|++|++++||+|+|+++ +++++++.+|++++|||+.+ +|+.+||+|||+++++ ++++++.+
T Consensus 21 ~~~v~kai~~gka~lViiA~D~~~-~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~~~vai~d~g 90 (101)
T 1w41_A 21 ARKSIQYAKMGGAKLIIVARNARP-DIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPG 90 (101)
T ss_dssp HHHHHHHHHHTCCSEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCCCEEEEEECT
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCH-HHHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCCCcEEEEEEecCC
Confidence 589999999999999999999766 88999999999999998875 9999999999999776 56666554
No 25
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.83 E-value=1.6e-20 Score=120.99 Aligned_cols=69 Identities=13% Similarity=0.227 Sum_probs=61.0
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe-CCHhHHhhHhCCCCce-EEEEEecCc
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV-PSKKDIGEALGRKKPC-ICVIVKSTE 71 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~~~~~-~v~~i~~~~ 71 (91)
+++|+++|++|++++||+|+|+ |.+++++|+.+|++++|||+.+ +|+.+||+|||+++++ ++++++.+.
T Consensus 26 ~~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~~~~s~vaI~d~g~ 96 (110)
T 3cpq_A 26 SKRTIKFVKHGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGL 96 (110)
T ss_dssp HHHHHHHHHTTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEECCSCHHHHHHHTTCSSCCSEEEEEECTT
T ss_pred HHHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCCHHHHHHHhCCccceEEEEEecCCH
Confidence 5899999999999999999999 5589999999999999998877 9999999999999886 566665543
No 26
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=99.80 E-value=6.8e-20 Score=125.93 Aligned_cols=86 Identities=19% Similarity=0.250 Sum_probs=71.6
Q ss_pred hhHHHHHH--HhCCceEEEEeCCCC-chhH-----HhhHHHHHhcCCCCEEEeCCHhHHhhHhCC--------------C
Q psy6265 2 NSTVQGPL--QRKTIMLCIFAGDVT-PIEI-----MCHLPAVCEDKDIPYCYVPSKKDIGEALGR--------------K 59 (91)
Q Consensus 2 ~kev~kai--~~gka~lViiA~D~s-p~~~-----~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~--------------~ 59 (91)
+||++|+| ++|++++||||+|++ |..+ ..++..+|++++|||+++.|+++||+|||. .
T Consensus 40 ~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V~s~k~LG~a~Gi~~~~~~~~~d~~g~~ 119 (165)
T 2kg4_A 40 VYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAEQP 119 (165)
T ss_dssp GGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHHTTTCSSCCCCSSCCC
T ss_pred HHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEEEECCHHHHHHHHCCcccccccccccCCCc
Confidence 68999999 999999999999997 5443 445569999999999999999999999996 2
Q ss_pred CceEEEEEecCchHH---HHHHHHHHHhhcC
Q psy6265 60 KPCICVIVKSTESVA---ELYEEVKQEIGAL 87 (91)
Q Consensus 60 ~~~~v~~i~~~~~~~---~~~~~~~~~~~~~ 87 (91)
+.++|+++.+.++.+ ++++.|.++++.+
T Consensus 120 r~~scv~V~~~g~~s~~~~a~~~l~~~~~e~ 150 (165)
T 2kg4_A 120 PDLHCVLVTNPHSSQWKDPALSQLICFCRES 150 (165)
T ss_dssp SCSCEEEEECCSSCCCCCHHHHHHHHHHHHH
T ss_pred ccceEEEEeccccccccchHHHHHHHHHHHh
Confidence 556777777777665 7888888887654
No 27
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=99.75 E-value=3.2e-18 Score=112.84 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=59.3
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEE-EeCCHhHHhhHhCCCCceE-EEEEecC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYC-YVPSKKDIGEALGRKKPCI-CVIVKST 70 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~-~~~sk~eLG~a~G~~~~~~-v~~i~~~ 70 (91)
.++|+++|++|+++|||+|+|++| +++++++.+|...++|+. +++|++|||+|||++++++ ++++|.+
T Consensus 32 ~~~v~kaIr~gkakLVIiA~Das~-~~~~ki~~~~~~~~~~V~~~~~sk~eLG~A~Gk~~~v~~vaI~D~G 101 (125)
T 3vi6_A 32 YKQTLKMIRQGKAKLVILANNCPA-LRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPG 101 (125)
T ss_dssp HHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHHHHHTTCEEEECSSCHHHHHHHTTCSSCCCEEEEEECT
T ss_pred HHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHhCCCcEEEcCCHHHHHHHhCCcccEEEEEEeCch
Confidence 589999999999999999999999 689999999888887754 6999999999999998875 5555544
No 28
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=99.43 E-value=5.5e-13 Score=89.85 Aligned_cols=84 Identities=14% Similarity=0.239 Sum_probs=67.0
Q ss_pred hhHHHHHHHhC--CceEEEEeCCCCc------hhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCC------CCceEEEEE
Q psy6265 2 NSTVQGPLQRK--TIMLCIFAGDVTP------IEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGR------KKPCICVIV 67 (91)
Q Consensus 2 ~kev~kai~~g--ka~lViiA~D~sp------~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~------~~~~~v~~i 67 (91)
++|+.|+|.++ ++.|+++|+|++. ..+++.+.++|.+++||++.|.+.+.||+++|+ .+..+|+++
T Consensus 30 l~EaaKaLdk~p~~a~lCvLA~dcd~e~D~a~~~y~kLveAlC~E~~I~lIkVdd~kkLgew~Gk~d~~g~pr~~sCvvV 109 (146)
T 3cg6_A 30 VYESAKVLNVDPDNVTFCVLAADEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGSDEEGGAPGDLHCILI 109 (146)
T ss_dssp HHHHHHHHHHCGGGEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHHHHC----------CCSEEEE
T ss_pred HHHHHHHHhcCCCeEEEEEecCCCccccchhHHHHHHHHHHHHhhcCCCeEEeCchhHHHHHhCCcCCCCCCCCCEEEEE
Confidence 57899999997 9999999999972 256777899999999999999999999999995 334667777
Q ss_pred ecCchH---HHHHHHHHHHhh
Q psy6265 68 KSTESV---AELYEEVKQEIG 85 (91)
Q Consensus 68 ~~~~~~---~~~~~~~~~~~~ 85 (91)
.+.++. +.+++.+.++++
T Consensus 110 ~d~g~e~~~s~al~~l~~y~~ 130 (146)
T 3cg6_A 110 SNPNEDTWKDPALEKLSLFCE 130 (146)
T ss_dssp ECCC---CCCHHHHHHHHHHH
T ss_pred ecCCcccccCHHHHHHHHHHH
Confidence 777776 777888888764
No 29
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=99.12 E-value=2.2e-10 Score=78.47 Aligned_cols=72 Identities=14% Similarity=0.280 Sum_probs=58.2
Q ss_pred hhHHHHHHHhC--CceEEEEeCCCC-chh-----HHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCC------CceEEEEE
Q psy6265 2 NSTVQGPLQRK--TIMLCIFAGDVT-PIE-----IMCHLPAVCEDKDIPYCYVPSKKDIGEALGRK------KPCICVIV 67 (91)
Q Consensus 2 ~kev~kai~~g--ka~lViiA~D~s-p~~-----~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~------~~~~v~~i 67 (91)
++|+.|+|.+. ++.|+++|+|++ +.+ +++.+.++|.+++||++.|.+.+.||+++|+. +..+|+++
T Consensus 51 l~EaaKaLd~~p~~a~LCvLA~dc~~e~D~alqmy~kLVeAlC~E~~I~LIkV~d~kkLgew~G~~~~~~k~~~csCVlV 130 (167)
T 3ffm_A 51 VYESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGAGEEAGAPGDLHCILI 130 (167)
T ss_dssp HHHHHHHHHHCGGGEEEEEEECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTSCCSSSCSCCSEEEE
T ss_pred HHHHHHHhccCCCeEEEEEEeCCCCcccchhHHHHHHHHHHHHhhcCCCeEEeCCcchHHHHhCcCCCCCCCCccEEEEE
Confidence 47899999884 899999999985 222 46778899999999999999999999999952 23667777
Q ss_pred ecCchH
Q psy6265 68 KSTESV 73 (91)
Q Consensus 68 ~~~~~~ 73 (91)
.+.++.
T Consensus 131 td~ge~ 136 (167)
T 3ffm_A 131 SNPNED 136 (167)
T ss_dssp ECSSSS
T ss_pred CCCCcc
Confidence 676653
No 30
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=94.31 E-value=0.39 Score=31.31 Aligned_cols=46 Identities=9% Similarity=0.183 Sum_probs=42.0
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
+.++.+.+++...-.++|.++.+. +....+..+|+++|||+..+.+
T Consensus 52 ~~~~~~~l~~~~~~~l~ing~l~~-~~~~~YiklA~~~~i~fTiV~~ 97 (133)
T 2ohw_A 52 YKEAEHELKNSHNVTLLINGELQY-QSYSSYIQMASRYGVPFKIVSD 97 (133)
T ss_dssp CHHHHHHHHTCSSEEEEEETTSCH-HHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHhhCCCcEEEEcCCCCH-HHHHHHHHHHHHcCCCeEEecC
Confidence 457888999999999999999988 6788999999999999999988
No 31
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=92.98 E-value=0.22 Score=33.42 Aligned_cols=67 Identities=16% Similarity=0.293 Sum_probs=51.7
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCch--------------------------------------------hHHhhHHHHHh
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPI--------------------------------------------EIMCHLPAVCE 37 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~--------------------------------------------~~~~~l~~lc~ 37 (91)
.++|.++++.|.+..++|..|..-. +++..|...++
T Consensus 51 ~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~L~e~~~ 130 (166)
T 3ir9_A 51 ESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTDIVDEFSELAD 130 (166)
T ss_dssp HHHHHHHHTTTCEEEEEEETTCCCEEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhCCceEEEEecCccceEEEEECCCCCceeEEEeecChhhcccccccccccCccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999999986421 34667888999
Q ss_pred cCCCCEEEeCCHhHHhhHhCCCCceEEEEEe
Q psy6265 38 DKDIPYCYVPSKKDIGEALGRKKPCICVIVK 68 (91)
Q Consensus 38 ~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~ 68 (91)
+++--+.++.++.+-|.-+=+......|++.
T Consensus 131 ~~G~~v~ivs~~~eeG~ql~~~fGGIaaiLR 161 (166)
T 3ir9_A 131 KSNAKVVFVSTDFDEGSQLMNAFGGIAAILR 161 (166)
T ss_dssp HTTCEEEEECSCSHHHHHHHHTSTTEEEEES
T ss_pred hcCCEEEEECCCChhHHHHHHcCCCEEEEEe
Confidence 9999999999999888766334445455543
No 32
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=92.16 E-value=0.34 Score=32.28 Aligned_cols=53 Identities=19% Similarity=0.080 Sum_probs=38.6
Q ss_pred HHHHHHHhCCceEEEEeCC--C-Cc-hhHHhhHHHHHhcCCCCEEEe-CCHhHHhhHh
Q psy6265 4 TVQGPLQRKTIMLCIFAGD--V-TP-IEIMCHLPAVCEDKDIPYCYV-PSKKDIGEAL 56 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D--~-sp-~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~ 56 (91)
|+...|++|++.+||.-.| . .| ..=...+...|-.+||||.+- .+-+.+=+++
T Consensus 73 ~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~ai 130 (152)
T 1b93_A 73 QVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVATADFIIQSP 130 (152)
T ss_dssp HHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHHHHHHHHTSG
T ss_pred hHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHHHH
Confidence 5788999999999999988 3 33 122456999999999999763 3444444443
No 33
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=91.90 E-value=0.23 Score=31.84 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=52.2
Q ss_pred hhHHHHHHHhCCceEEEEeCCC----Cc---hhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDV----TP---IEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKST 70 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~----sp---~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~ 70 (91)
.++|.++++.|.+..++|..|. +| ..+.. +...+++++-.+.++.+..+-|.-+ +.....+|++.-+
T Consensus 43 ~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G~qL-~~~gGIaAiLRy~ 116 (124)
T 1x52_A 43 LKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVR-LVDSVKENAGTVRIFSSLHVSGEQL-SQLTGVAAILRFP 116 (124)
T ss_dssp HHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEEEECSSSHHHHHH-HTTTTEEEEESSC
T ss_pred HHHHHHHHHcCCccEEEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEEEECCCCccHHHH-hcCCCEEEEEecC
Confidence 4789999999999999999874 11 12444 6788889999999999999889888 5666666666543
No 34
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=91.29 E-value=1.4 Score=27.69 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=50.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe-CCHhHHhhHhCCCC----ceEEEEEecCch-----
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV-PSKKDIGEALGRKK----PCICVIVKSTES----- 72 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~~~----~~~v~~i~~~~~----- 72 (91)
++..+..+...+.+|.|+.|. +. .+..+++++++++-.. ....++.+..|... .-+..+++..|.
T Consensus 53 ~~~~~~~~~~~v~vv~vs~d~-~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~ 127 (161)
T 3drn_A 53 RDNWDLLKDYDVVVIGVSSDD-IN----SHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIY 127 (161)
T ss_dssp HHTHHHHHTTCEEEEEEESCC-HH----HHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHcCCEEEEEeCCC-HH----HHHHHHHHhCCCceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEE
Confidence 344555555558889898883 42 3556778899987544 45679999999864 334556664432
Q ss_pred -----HHHHHHHHHHHhhcC
Q psy6265 73 -----VAELYEEVKQEIGAL 87 (91)
Q Consensus 73 -----~~~~~~~~~~~~~~~ 87 (91)
....++++.+.++++
T Consensus 128 ~g~~~~~~~~~~il~~l~~l 147 (161)
T 3drn_A 128 NSQMNPANHVNEALKALKQI 147 (161)
T ss_dssp ECSSCTTHHHHHHHHHHHHH
T ss_pred ecCCCCCcCHHHHHHHHHHh
Confidence 245566666666543
No 35
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=90.41 E-value=0.38 Score=32.97 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=40.4
Q ss_pred HHHHHHHhCCceEEEEeCC--C-Cc--hhHHhhHHHHHhcCCCCEEE-eCCHhHHhhHhCCC
Q psy6265 4 TVQGPLQRKTIMLCIFAGD--V-TP--IEIMCHLPAVCEDKDIPYCY-VPSKKDIGEALGRK 59 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D--~-sp--~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~ 59 (91)
|+...|++|++.+||.-.| . .| .+ ...|...|-.+||||.+ ..+-+.+=+++=..
T Consensus 89 qI~d~I~~geIdlVInt~dPl~~~~h~~D-~~~IRR~A~~~~IP~~TnlatA~A~v~ail~~ 149 (178)
T 1vmd_A 89 QIGAMIAEGKIDVLIFFWDPLEPQAHDVD-VKALIRIATVYNIPVAITRSTADFLISSPLMN 149 (178)
T ss_dssp HHHHHHHTTSCCEEEEECCSSSCCTTSCC-HHHHHHHHHHTTCCEESSHHHHHHHHHSGGGG
T ss_pred hHHHHHHCCCccEEEEccCccCCCccccc-HHHHHHHHHHcCCCEEeCHHHHHHHHHHHhcc
Confidence 5788999999999999988 3 22 24 34699999999999976 44555555554333
No 36
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=89.86 E-value=0.33 Score=31.70 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=37.7
Q ss_pred HHHHHHHhCCceEEEEeCC--CC-c--hhHHhhHHHHHhcCCCCEEEeC-CHhHHhhHh
Q psy6265 4 TVQGPLQRKTIMLCIFAGD--VT-P--IEIMCHLPAVCEDKDIPYCYVP-SKKDIGEAL 56 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D--~s-p--~~~~~~l~~lc~~~~IP~~~~~-sk~eLG~a~ 56 (91)
++...|++|++.+||.-.| .. | .+ ...|...|-.++|||.+-. +-+.+=+++
T Consensus 65 ~I~d~I~~geIdlVInt~~pl~~~~h~~D-~~~IrR~A~~~~IP~~T~latA~a~v~al 122 (134)
T 2xw6_A 65 QMGARVAEGRILAVIFFRDPLTAQPHEPD-VQALLRVCDVHGVPLATNPMAAEALIPWL 122 (134)
T ss_dssp HHHHHHHTTCEEEEEEECCTTTCCTTSCC-SHHHHHHHHHHTCCEECSHHHHHHHHHHH
T ss_pred hHHHHHHCCCccEEEEccCcccCCCccch-HHHHHHHHHHcCCCeEcCHHHHHHHHHHH
Confidence 5788999999999999988 32 2 13 3458999999999997633 444444433
No 37
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=89.16 E-value=1.1 Score=28.05 Aligned_cols=80 Identities=10% Similarity=0.112 Sum_probs=50.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEE-eCCHhHHhhHhCCCC------------ceEEEEEec
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCY-VPSKKDIGEALGRKK------------PCICVIVKS 69 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~------------~~~v~~i~~ 69 (91)
++..+.++...+.+|.|+.| ++.. +..+++++++++-. .....++.++.|... .-+..+++.
T Consensus 59 ~~~~~~~~~~~~~vv~vs~d-~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~ 133 (163)
T 3gkn_A 59 NALLPEFDKAGAKILGVSRD-SVKS----HDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSP 133 (163)
T ss_dssp HHHHHHHHHTTCEEEEEESS-CHHH----HHHHHHHHCCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECT
T ss_pred HHHHHHHHHCCCEEEEEeCC-CHHH----HHHHHHHhCCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECC
Confidence 44555666666899999998 4533 44566677777643 345668999999754 233556665
Q ss_pred Cch---------HHHHHHHHHHHhhcC
Q psy6265 70 TES---------VAELYEEVKQEIGAL 87 (91)
Q Consensus 70 ~~~---------~~~~~~~~~~~~~~~ 87 (91)
.|. .....+++.+.++++
T Consensus 134 ~G~i~~~~~~~~~~~~~~~il~~l~~l 160 (163)
T 3gkn_A 134 EGQVVQAWRKVKVAGHADAVLAALKAH 160 (163)
T ss_dssp TSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence 442 134566677666654
No 38
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=88.55 E-value=0.74 Score=29.72 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=32.8
Q ss_pred HHHHHHHhCCceEEEEeCCCC--chhHHhhHHHHHhcCCCCEEEe
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVT--PIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~s--p~~~~~~l~~lc~~~~IP~~~~ 46 (91)
++...|++|++.+||--.|-. +..=-..+...|-+++|||++-
T Consensus 87 ~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 87 SIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp CHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEECS
T ss_pred cHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEcC
Confidence 477889999999999988763 1111345889999999999753
No 39
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=88.00 E-value=0.39 Score=35.61 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=54.3
Q ss_pred hhHHHHHHHhCCceEEEEeCCCC-chhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVT-PIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKST 70 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~s-p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~ 70 (91)
.++|.+|++.|.+..++|..|.. ..+ ...+...++++|-.+.++.+..+-|+-+ ......+|++.-+
T Consensus 270 ~~eV~~Ale~GAVetLlV~d~l~rr~~-~~~L~e~~~~~G~~V~ivs~~~e~G~qL-~~lGGIAaiLRy~ 337 (347)
T 2qi2_A 270 RDQTESALQMGALSDLIITDEMFRTED-GRRSLSIAQTVGTRIHIVSVSNDPGQIV-KKFGGFAGILRYR 337 (347)
T ss_dssp HHHHHHHHHTTCEEEEEEEHHHHTSHH-HHHHHHHHHHHTCEEEEECTTSHHHHHH-HHTTSEEEEECSC
T ss_pred HHHHHHHHHcCCCeEEEEecccccchh-HHHHHHHHHHcCCEEEEECCCCcchHHH-HhcCCEEEEEecc
Confidence 47899999999999999999864 223 5678889999999999999998888888 5666666666543
No 40
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=87.12 E-value=1.7 Score=26.82 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=37.9
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHh
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIG 53 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG 53 (91)
+....+++..+..||+|-..........+...|+..++.+.++++-.++-
T Consensus 56 ~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~~~~ 105 (141)
T 3nkl_A 56 YLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLDDLV 105 (141)
T ss_dssp GHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCHHHHH
T ss_pred HHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCHHHHh
Confidence 44566777788889999754333556778889999999999999877653
No 41
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=85.92 E-value=3.2 Score=25.50 Aligned_cols=56 Identities=5% Similarity=0.009 Sum_probs=35.6
Q ss_pred hHHHHHHHh----CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe-CCH---hHHhhHhCCC
Q psy6265 3 STVQGPLQR----KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV-PSK---KDIGEALGRK 59 (91)
Q Consensus 3 kev~kai~~----gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~-~sk---~eLG~a~G~~ 59 (91)
++..+.+.. ..+.+|.|+.|-.. +....+..+++++++++..+ ++. .++.+..|..
T Consensus 47 ~~l~~~~~~~~~~~~~~vv~vs~d~~~-d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~v~ 110 (164)
T 2ggt_A 47 IQVVDEIDSITTLPDLTPLFISIDPER-DTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVY 110 (164)
T ss_dssp HHHHHHHHHSSSSCCEEEEEEESCTTT-CCHHHHHHHHHTTCSSCEEEECCHHHHHHHHHTTTCC
T ss_pred HHHHHHHhhccCCCcEEEEEEEeCCCC-CCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHhcCeE
Confidence 344555554 37888999888632 12345667788888887654 233 3577778865
No 42
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=85.08 E-value=4.3 Score=28.95 Aligned_cols=64 Identities=8% Similarity=0.165 Sum_probs=45.0
Q ss_pred hHHHHHHHhC-CceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCC-ceEEEEEecC
Q psy6265 3 STVQGPLQRK-TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKK-PCICVIVKST 70 (91)
Q Consensus 3 kev~kai~~g-ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~-~~~v~~i~~~ 70 (91)
|-|..+|+.| ...-+++.++... . ..+...|+..++|+..+ +++.|.+..+... ...++.+...
T Consensus 41 ~~V~eaL~~~~~i~~l~~~~~~~~-~--~~l~~~~~~~~~~v~~v-~~~~l~~ls~~~~~qGv~a~~~~~ 106 (277)
T 3nk6_A 41 EPLMECIRAGVQFIEVYGSSGTPL-D--PALLDLCRQREIPVRLI-DVSIVNQLFKAERKAKVFGIARVP 106 (277)
T ss_dssp HHHHHHHHTTCCEEEEEEETTSCC-C--HHHHHHHHHTTCCEEEE-CHHHHTTCC-----CCEEEEEECC
T ss_pred HHHHHHHhCCCCeEEEEEeCCccC-c--HHHHHHHHhcCCcEEEE-CHHHHHHhhCCCCCCeEEEEEecC
Confidence 5677888887 5788899988765 3 45677888999998776 7888988888643 4556666554
No 43
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=84.82 E-value=0.67 Score=34.48 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=53.0
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchh----HHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIE----IMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKST 70 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~----~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~ 70 (91)
.++|.+|++.|.+.-++|..|..-.. ....+...+++++--+.++.|..+-|.-+ ......+|++.-+
T Consensus 270 ~~eV~~Ale~GAVetLLIsd~l~r~~r~~~~~~~l~e~~~~~G~~v~i~S~~~e~G~qL-~~lGGIaAiLRy~ 341 (352)
T 3oby_A 270 LDEVREAHNYRAIEVLLVADEFLLEEREKWDVDGLLREVEESGGKVVIMSTEFEPGKRL-MSLGGIAALLRFN 341 (352)
T ss_dssp HHHHHHHHTTTCEEEEEEEHHHHHHHTTTSCHHHHHHHHHHTTCEEEEECTTSHHHHHH-HHTTSEEEEESSC
T ss_pred HHHHHHHHHcCCceEEEEeccchhcccchHHHHHHHHHHHHcCCEEEEEcCCCcchhHH-hcCCCEEEEEecC
Confidence 47899999999999999998763211 35668889999999999999998888777 5556666666543
No 44
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=83.91 E-value=0.53 Score=34.94 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=49.4
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEe
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVK 68 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~ 68 (91)
.++|.+|++.|.+.-++|..|..- .+....+...+++++--+.++.|..+-|.-+ ......+|++.
T Consensus 285 ~~eV~~Ale~GAVetLLV~d~l~r~~~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~qL-~~lgGiaAiLR 353 (357)
T 3j15_A 285 LKEVEEAVNYGAVETLLVLDELLKGELREKVEELMDAVRYSRGEVVVVSSEHEGGEKL-KALGGLAALLR 353 (357)
T ss_dssp THHHHHHHHHTCEEEEEEEHHHHTSSCCHHHHHHHHHHHHTTCEEEEECSSSTTHHHH-HHHCSEEEEES
T ss_pred HHHHHHHHHhCCCcEEEEecccccccchHHHHHHHHHHHHcCCEEEEECCCCCcchhh-hcCCcEEEEEe
Confidence 478999999999999999877532 2456778999999999999998877666655 33344445443
No 45
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=83.73 E-value=2.2 Score=32.55 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=53.6
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCc---------------------------------------------hhHHhhHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTP---------------------------------------------IEIMCHLPAVC 36 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp---------------------------------------------~~~~~~l~~lc 36 (91)
.++|.+|++.|.+.-++|..+..- .++...|...+
T Consensus 310 ~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~l~e~a 389 (441)
T 3e20_C 310 VVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWLAEHY 389 (441)
T ss_dssp HHHHHHHHHSSCCSEEEEETTCCCEEC----------CCEECSCTTTCCC-----------------CCEEHHHHHHHHG
T ss_pred HHHHHHHHHhCCccEEEEecccccceeEEECCCCceEEEecCccccccccccccccCcccCccceecchhhHHHHHHHHH
Confidence 478999999999999999987740 02444688899
Q ss_pred hcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecC
Q psy6265 37 EDKDIPYCYVPSKKDIGEALGRKKPCICVIVKST 70 (91)
Q Consensus 37 ~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~ 70 (91)
+++|.-+.++.++.+-|.-+-+.....+|++.-+
T Consensus 390 ~~~G~~v~~vs~~~~eG~ql~~~fgGIaaiLRy~ 423 (441)
T 3e20_C 390 KDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRYQ 423 (441)
T ss_dssp GGGSCCEEEECTTSHHHHHHHHTSTTEEEECSSC
T ss_pred HHcCCEEEEECCCCHHHHHHHHcCCcEEEEEecc
Confidence 9999999999999998887754555666666543
No 46
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=83.49 E-value=1.4 Score=32.78 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=50.5
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCc-----hhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEe
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTP-----IEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVK 68 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp-----~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~ 68 (91)
.++|.+|++.|.+.-++|..|..- .+....+...+++++--+.++.+..+-|.-+ +.....+|++.
T Consensus 290 ~~eV~~Ale~GAVetLLV~d~l~r~~d~~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~qL-~~lGGIAAiLR 360 (364)
T 3obw_A 290 LEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVILVPKESPIYFEL-KNLTGILAILR 360 (364)
T ss_dssp HHHHHHHHHHTCEEEEEEEGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEECTTSTTHHHH-HHTTTEEEEES
T ss_pred HHHHHHHHHhCCCcEEEEeccCcccccchHHHHHHHHHHHHhcCCEEEEECCCCCCchhh-hcCCcEEEEEe
Confidence 478999999999999999988642 1345678889999999999999887777766 44444455543
No 47
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=82.69 E-value=5.8 Score=23.76 Aligned_cols=76 Identities=9% Similarity=0.156 Sum_probs=47.3
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC---HhHHhhHhCCCCceEEEEEe-cCchH--HHHHHHHHHHhh
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS---KKDIGEALGRKKPCICVIVK-STESV--AELYEEVKQEIG 85 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s---k~eLG~a~G~~~~~~v~~i~-~~~~~--~~~~~~~~~~~~ 85 (91)
+.+.++.|..|.++.. +....++++.+.+.+.. ..+|.+..|....=+..+++ .+|.. ....+.+.+..+
T Consensus 61 ~~~~vv~i~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~ 136 (144)
T 1o73_A 61 KNFEVVLISWDENESD----FHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPD 136 (144)
T ss_dssp TTEEEEEEECCSSHHH----HHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTT
T ss_pred CCEEEEEEeCCCCHHH----HHHHHHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHHhhCCC
Confidence 5677888888865533 33444555432221222 46888899986555577777 55542 445667777777
Q ss_pred cCCCCC
Q psy6265 86 ALPVTW 91 (91)
Q Consensus 86 ~~~~~~ 91 (91)
....||
T Consensus 137 ~~~~~W 142 (144)
T 1o73_A 137 GANFPW 142 (144)
T ss_dssp CTTTTC
T ss_pred ccCCCC
Confidence 788888
No 48
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=80.39 E-value=2.1 Score=31.62 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=52.1
Q ss_pred hhHHHHHHHhCCceEEEEeCCCC----c--hhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVT----P--IEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKST 70 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~s----p--~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~ 70 (91)
.++|.+|++.|.+.-++|..|.. + .+....|...+++++-.+.++.+..+-|.-+ +.....+|++.-+
T Consensus 277 ~~eV~~Al~~GAVetLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~qL-~~~gGIaAiLRy~ 350 (358)
T 3agj_B 277 PGEVLAVARMGAVDTVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVIIIPGDSPAGERL-VSFGGVIALLRYP 350 (358)
T ss_dssp HHHHHHHHHHTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHH-GGGTTEEEEESSC
T ss_pred HHHHHHHHHhCCceEEEEecccccCCChhhHHHHHHHHHHHHHcCCEEEEECCCCcchhhh-hcCCcEEEEEecc
Confidence 47899999999999999998742 1 1235567888889999999999999988776 5555556666544
No 49
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=80.11 E-value=4.3 Score=30.29 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=51.5
Q ss_pred hhHHHHHHHhCCceEEEEeCCCC----c--hhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEec
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVT----P--IEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKS 69 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~s----p--~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~ 69 (91)
.++|.+|++.|.+..++|..|.- + ...+..|...++++|-.+.++.+..+-|.-+ ......+|++.-
T Consensus 302 ~~eV~~Ale~GAVetLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G~qL-~~lgGIAAiLRy 374 (386)
T 2vgn_A 302 EKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEEL-DQLTGIACILKY 374 (386)
T ss_dssp HHHHHHHHHTTCEEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHHHHH-HHTTTEEEEESS
T ss_pred HHHHHHHHHcCCcEEEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcchhhH-hccCcEEEEEec
Confidence 47899999999999999999852 1 1114567778889999999999998888777 455555666553
No 50
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=80.01 E-value=2.1 Score=27.21 Aligned_cols=84 Identities=6% Similarity=-0.007 Sum_probs=49.9
Q ss_pred HHHHHHHh-CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC---HhHHhhHhCCCCceEEEEEecC-chH--HHH
Q psy6265 4 TVQGPLQR-KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS---KKDIGEALGRKKPCICVIVKST-ESV--AEL 76 (91)
Q Consensus 4 ev~kai~~-gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s---k~eLG~a~G~~~~~~v~~i~~~-~~~--~~~ 76 (91)
+..+.... +.+.+|.|.-|.++.. +..+.++++.+...+.. ..+|.+..|....=+..+++.. |.. ...
T Consensus 72 ~l~~~~~~~~~v~vv~v~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~ 147 (165)
T 3s9f_A 72 EFYEKHHDSKNFEIILASWDEEEDD----FNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRA 147 (165)
T ss_dssp HHHHHHTTTTTEEEEEEECCCSHHH----HHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCH
T ss_pred HHHHHhccCCCeEEEEEecCCCHHH----HHHHHHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEeccc
Confidence 33344443 4678888888866533 33444555432222222 2688999998755557777765 653 445
Q ss_pred HHHHHHHhhcCCCCC
Q psy6265 77 YEEVKQEIGALPVTW 91 (91)
Q Consensus 77 ~~~~~~~~~~~~~~~ 91 (91)
.+.+.+.....-.||
T Consensus 148 ~~~~~~d~~~~~fpw 162 (165)
T 3s9f_A 148 RHALTQDPMGEQFPW 162 (165)
T ss_dssp HHHHHHCTTCTTTTC
T ss_pred HHHHhhCcccccCCC
Confidence 566666666666777
No 51
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=79.27 E-value=1.8 Score=31.98 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=43.1
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhh
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGE 54 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~ 54 (91)
.++|.++++.|.+..++|..| . +....+...+...|-.+.++.+..+-|.
T Consensus 304 ~~eV~~Al~~GaVetLlv~d~--r-d~~~~L~e~a~~~G~~V~ivs~~~~~g~ 353 (373)
T 3agk_A 304 EKDVEAALEMGAVKTLLIHES--R-EDLEEWVEKAKSSGAQVIVVPESLAEAE 353 (373)
T ss_dssp HHHHHHHHHTTCEEEEEEETT--C-TTHHHHHHHHTTTTCEEEEECTTSTTHH
T ss_pred HHHHHHHHHhCCccEEEEeCC--h-hHHHHHHHHHHHcCCEEEEECCCCccHH
Confidence 478999999999999999998 3 5677899999999999999998866663
No 52
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=79.15 E-value=2.8 Score=29.75 Aligned_cols=44 Identities=16% Similarity=0.071 Sum_probs=26.5
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.++.+.+++.+++.||.-...+| .+.+.|...|++.|+|+..+.
T Consensus 202 ~~l~~~ik~~~v~~if~e~~~~~-~~~~~l~~~a~~~g~~v~~l~ 245 (282)
T 3mfq_A 202 IETVNLIIDHNIKAIFTESTTNP-ERMKKLQEAVKAKGGQVEVVT 245 (282)
T ss_dssp HHHHHHHHHHTCCEEECBTTSCT-HHHHHHHHHHHTTSCCCEEET
T ss_pred HHHHHHHHHcCCCEEEEeCCCCh-HHHHHHHHHHHhcCCceEEec
Confidence 44555666666666666665555 445556666666666665543
No 53
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=79.06 E-value=7.2 Score=27.28 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=46.6
Q ss_pred hHHHHHHHhC--CceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCC-CceEEEEEecC
Q psy6265 3 STVQGPLQRK--TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRK-KPCICVIVKST 70 (91)
Q Consensus 3 kev~kai~~g--ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~-~~~~v~~i~~~ 70 (91)
|-|..+++.| .+.-+++.++..... ...+..+++..+||+..+ +++.|-+..+.. ....++.+...
T Consensus 19 ~~V~eal~~~~~~i~~l~~~~~~~~~~-~~~l~~~~~~~~i~v~~v-~~~~l~~ls~~~~~qGv~a~~~~~ 87 (253)
T 1gz0_A 19 HAVQALLERAPERFQEVFILKGREDKR-LLPLIHALESQGVVIQLA-NRQYLDEKSDGAVHQGIIARVKPG 87 (253)
T ss_dssp HHHHHHHHSCGGGEEEEEEESSCCCTT-THHHHHHHHHHTCEEEEE-CSHHHHHTTTSCCCTTEEEEECCC
T ss_pred HHHHHHHhcCCCCeEEEEEECCccchh-HHHHHHHHHHCCCcEEEe-CHHHHHHHhCCCCCcEEEEEEecc
Confidence 5678889887 578889988765422 345777788889988665 567888888864 34556666543
No 54
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=78.37 E-value=7.4 Score=23.54 Aligned_cols=62 Identities=3% Similarity=0.063 Sum_probs=37.7
Q ss_pred HHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEE-eCCHhHHhhHhCCCCceEEEEEecC
Q psy6265 5 VQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCY-VPSKKDIGEALGRKKPCICVIVKST 70 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~~~~v~~i~~~ 70 (91)
..+.+....+.++.+..|-++. .+..+.+++++++-. .....++.+..|....=++.+++..
T Consensus 51 ~~~~~~~~~v~vv~v~~d~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~ 113 (151)
T 2f9s_A 51 QYKHFKSQGVEIVAVNVGESKI----AVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPE 113 (151)
T ss_dssp HHHHHGGGTEEEEEEEESCCHH----HHHHHHHHHTCCSCEEEETTSHHHHHTTCCSSCEEEEECTT
T ss_pred HHHHhccCCeEEEEEECCCCHH----HHHHHHHHcCCCceEEECCchHHHHhcCCCCCCeEEEECCC
Confidence 3344444457777777776553 244556677776533 3345689999998755455666544
No 55
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=78.01 E-value=8.4 Score=22.71 Aligned_cols=82 Identities=10% Similarity=0.126 Sum_probs=48.3
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeCCHhHHhhHh-CCCCceEEEEEecCchHHHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVPSKKDIGEAL-GRKKPCICVIVKSTESVAELYE 78 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~-G~~~~~~v~~i~~~~~~~~~~~ 78 (91)
.+..+.+++....+||+--+... .++...+.......++|++.+.+..+-.... .--...+..++..+-+.++...
T Consensus 40 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~ 119 (140)
T 3grc_A 40 AQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLIL 119 (140)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHH
Confidence 46778888899999999765432 2333434332245689998887766554443 3233344556666655455554
Q ss_pred HHHHHh
Q psy6265 79 EVKQEI 84 (91)
Q Consensus 79 ~~~~~~ 84 (91)
.+...+
T Consensus 120 ~i~~~l 125 (140)
T 3grc_A 120 SLHRAI 125 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 56
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=77.47 E-value=4.2 Score=25.54 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=29.1
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC-CHhHHh
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP-SKKDIG 53 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~-sk~eLG 53 (91)
-.+..+|+..+..|.+ .+..+|++++||++... +..+..
T Consensus 73 ~~~~~iIlt~g~~~~~---~i~~~A~~~~ipvl~t~~~T~~~~ 112 (139)
T 2ioj_A 73 PNVRCLILTGNLEPVQ---LVLTKAEERGVPVILTGHDTLTAV 112 (139)
T ss_dssp TTEEEEEEETTCCCCH---HHHHHHHHHTCCEEECSSCHHHHH
T ss_pred CCCcEEEEcCCCCCCH---HHHHHHHHCCCeEEEECCCHHHHH
Confidence 4588999999988743 46689999999998766 444333
No 57
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=76.97 E-value=3.2 Score=32.23 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=49.2
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVK 81 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~ 81 (91)
.-||.++|+-=..-++++...-....-...+...|.++++|.+.+-+|-+. .+-++.+.+++|.
T Consensus 114 ~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr----------------~~ad~~~~~~~i~ 177 (548)
T 3vqt_A 114 SEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDR----------------EALHPLDVMADIE 177 (548)
T ss_dssp SHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTS----------------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccc----------------hhcchhHhhhhhh
Confidence 358889998888777777665554344667899999999999877776652 3445666777777
Q ss_pred HHhhc
Q psy6265 82 QEIGA 86 (91)
Q Consensus 82 ~~~~~ 86 (91)
+.+..
T Consensus 178 ~~l~~ 182 (548)
T 3vqt_A 178 QHLQI 182 (548)
T ss_dssp HHHTS
T ss_pred hhcCC
Confidence 66543
No 58
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=76.85 E-value=9.7 Score=22.84 Aligned_cols=76 Identities=11% Similarity=0.053 Sum_probs=46.5
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC---CHhHHhhHhCCCCceEEEEEe-cCchH--HHHHHHHHHHhh
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP---SKKDIGEALGRKKPCICVIVK-STESV--AELYEEVKQEIG 85 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~---sk~eLG~a~G~~~~~~v~~i~-~~~~~--~~~~~~~~~~~~ 85 (91)
+.+.++.|..|.++.. +..++++++.+-..+. ...+|.+..|....=+..+++ .+|.. ......+.+...
T Consensus 61 ~~~~vv~v~~d~~~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~~~~ 136 (144)
T 1i5g_A 61 KNFEVMLISWDESAED----FKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPE 136 (144)
T ss_dssp TTEEEEEEECCSSHHH----HHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTT
T ss_pred CCEEEEEEeCCCCHHH----HHHHHHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhhCcc
Confidence 5677888887765533 3445556653222122 246888999986555577777 55542 445666667776
Q ss_pred cCCCCC
Q psy6265 86 ALPVTW 91 (91)
Q Consensus 86 ~~~~~~ 91 (91)
....||
T Consensus 137 ~~~~~w 142 (144)
T 1i5g_A 137 AKDFPW 142 (144)
T ss_dssp CTTTTC
T ss_pred cccCCC
Confidence 677777
No 59
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=75.87 E-value=10 Score=22.75 Aligned_cols=63 Identities=17% Similarity=0.323 Sum_probs=39.4
Q ss_pred HHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEE-EeCCHhHHhhHhCCCCceEEEEEecCc
Q psy6265 6 QGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYC-YVPSKKDIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 6 ~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~-~~~sk~eLG~a~G~~~~~~v~~i~~~~ 71 (91)
.+......+.++.+..|.++. ..+..+.+++++++- ......++.+..|....=++.+++.+|
T Consensus 54 ~~~~~~~~~~vv~v~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G 117 (153)
T 2l5o_A 54 ANDYKNKNFQVLAVAQPIDPI---ESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKG 117 (153)
T ss_dssp HHHGGGTTEEEEEEECTTSCH---HHHHHHHHHTTCCSEEEECSSCHHHHHHTCCSSSEEEEECSSS
T ss_pred HHHhccCCeEEEEEecCCCCH---HHHHHHHHHcCCCceEEcCchHHHHHHcCCCccCeEEEECCCC
Confidence 333444447777777665542 345667788888864 344567899999986544455665543
No 60
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=75.76 E-value=11 Score=23.10 Aligned_cols=56 Identities=11% Similarity=0.016 Sum_probs=34.5
Q ss_pred hHHHHHHHh----CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC-CHh---HHhhHhCCC
Q psy6265 3 STVQGPLQR----KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP-SKK---DIGEALGRK 59 (91)
Q Consensus 3 kev~kai~~----gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~-sk~---eLG~a~G~~ 59 (91)
++..+.... ..+.+|.|+-|-.. +....+..+++++++++..+. +.+ ++.+..|..
T Consensus 50 ~~l~~~~~~~~~~~~v~vv~is~d~~~-d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 113 (171)
T 2rli_A 50 VQVVRQLEAEPGLPPVQPVFITVDPER-DDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVY 113 (171)
T ss_dssp HHHHHHHHHSTTSCCEEEEEEESCSTT-CCHHHHHHHHHTTCTTCCEEECCHHHHHHHHHHSCCC
T ss_pred HHHHHHHhhccCCCceEEEEEEECCCC-CCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHhCeE
Confidence 344455543 46888899887422 112346677788888765443 333 677888865
No 61
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=75.33 E-value=2.1 Score=26.15 Aligned_cols=83 Identities=7% Similarity=0.101 Sum_probs=47.3
Q ss_pred HHHHHH-hCCceEEEEeCCCCchhHHhhHHHHHhcCCC---CEEEeCCHhHHhhHhCCCCceEEEEEe-cCchH--HHHH
Q psy6265 5 VQGPLQ-RKTIMLCIFAGDVTPIEIMCHLPAVCEDKDI---PYCYVPSKKDIGEALGRKKPCICVIVK-STESV--AELY 77 (91)
Q Consensus 5 v~kai~-~gka~lViiA~D~sp~~~~~~l~~lc~~~~I---P~~~~~sk~eLG~a~G~~~~~~v~~i~-~~~~~--~~~~ 77 (91)
..+... ++.+.++.|..|.++.. +..+.++++. |+.......+|.+..|....=+..+++ .+|.. ....
T Consensus 53 l~~~~~~~~~~~vv~v~~d~~~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~ 128 (146)
T 1o8x_A 53 FYDKFHESKNFEVVFCTWDEEEDG----FAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRAR 128 (146)
T ss_dssp HHHHHTTTTTEEEEEEECCCSHHH----HHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHH
T ss_pred HHHHhhhcCCeEEEEEeCCCCHHH----HHHHHHHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecch
Confidence 334444 25677888887765533 3344555542 322112246888888886554567777 55542 3445
Q ss_pred HHHHHHhhcCCCCC
Q psy6265 78 EEVKQEIGALPVTW 91 (91)
Q Consensus 78 ~~~~~~~~~~~~~~ 91 (91)
..+.+.......||
T Consensus 129 ~~~~~~~~~~~~~w 142 (146)
T 1o8x_A 129 ATLVKDPEGEQFPW 142 (146)
T ss_dssp HHHTTCTTCTTTTC
T ss_pred hHHhhCCccccCCC
Confidence 55656666666666
No 62
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=75.25 E-value=11 Score=22.77 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=42.5
Q ss_pred HHHHH-HhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC----HhHHhhHhCCCCceEEEEEecCch
Q psy6265 5 VQGPL-QRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS----KKDIGEALGRKKPCICVIVKSTES 72 (91)
Q Consensus 5 v~kai-~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s----k~eLG~a~G~~~~~~v~~i~~~~~ 72 (91)
..+.. ....+.++.|..|-++ ..+..+.+++++++..+.+ ..++.+..|....=+..+++..|.
T Consensus 60 l~~~~~~~~~~~~v~v~~d~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~ 128 (150)
T 3fw2_A 60 IYKKYKKNKYIGMLGISLDVDK----QQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGK 128 (150)
T ss_dssp HHHHHTTCSSEEEEEEECCSCH----HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSB
T ss_pred HHHHhccCCCeEEEEEEcCCCH----HHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECCCCE
Confidence 33444 3334788888888654 2355666888998866654 468999999875555677766553
No 63
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=75.24 E-value=3.3 Score=25.20 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=26.7
Q ss_pred HHHHHHhCCc--eEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 5 VQGPLQRKTI--MLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 5 v~kai~~gka--~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
+.++|++-+. .|.|++.|-.. ...|+.+|++.|-.+...
T Consensus 43 tkkaL~~l~~Ge~L~Vl~dd~~a---~~dI~~~~~~~G~~v~~~ 83 (98)
T 1jdq_A 43 TKRALQNMKPGEILEVWIDYPMS---KERIPETVKKLGHEVLEI 83 (98)
T ss_dssp HHHHHHTCCTTCEEEEEESSCTH---HHHHHHHHHHSSCCEEEE
T ss_pred HHHHHHhCCCCCEEEEEECCccH---HHHHHHHHHHCCCEEEEE
Confidence 4455554332 38889988543 467999999999877543
No 64
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=75.05 E-value=9 Score=22.16 Aligned_cols=80 Identities=15% Similarity=0.027 Sum_probs=42.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC---HhHHhhHhCCCCceEEEEEecCchHHHHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS---KKDIGEALGRKKPCICVIVKSTESVAELYEE 79 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s---k~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~ 79 (91)
.+....+++....+||+--+....+-...+..+-+..++|++.+.+ ....-++.. ..+...+..+-+.++....
T Consensus 36 ~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~~~~~~~~~---~ga~~~l~KP~~~~~l~~~ 112 (120)
T 3f6p_A 36 NEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSEIDKVIGLE---IGADDYVTKPFSTRELLAR 112 (120)
T ss_dssp HHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSCHHHHHHHHH---TTCCEEEEESCCHHHHHHH
T ss_pred HHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCChHHHHHHHh---CCcceeEcCCCCHHHHHHH
Confidence 4567777888888888876553322223333333456788775442 333333332 1234455555555555555
Q ss_pred HHHHhh
Q psy6265 80 VKQEIG 85 (91)
Q Consensus 80 ~~~~~~ 85 (91)
+...++
T Consensus 113 i~~~l~ 118 (120)
T 3f6p_A 113 VKANLR 118 (120)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 554443
No 65
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=74.87 E-value=4.4 Score=29.62 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=32.7
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
+..+.+-+.+...+|++.+..|. ..+.++|++++||+....
T Consensus 74 ~~~~~l~~~~iP~IIvtrg~~pp---~elie~A~e~~ipLl~T~ 114 (312)
T 1knx_A 74 QILHNLLKLNPPAIILTKSFTDP---TVLLQVNQTYQVPILKTD 114 (312)
T ss_dssp TTHHHHHTTCCSCEEEETTTCCC---HHHHHHGGGTCCCEEEES
T ss_pred HHHHHHhCCCCCEEEEECCCCCC---HHHHHHHHHcCCEEEEeC
Confidence 35566777789999999998874 357789999999997644
No 66
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=74.31 E-value=5.6 Score=28.05 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=32.5
Q ss_pred CCchhHHhhHHHHHhcCCCCEEEeCC--HhHHhhHhCCCCceEEEEEec-------CchHHHHHHHHHHHhhc
Q psy6265 23 VTPIEIMCHLPAVCEDKDIPYCYVPS--KKDIGEALGRKKPCICVIVKS-------TESVAELYEEVKQEIGA 86 (91)
Q Consensus 23 ~sp~~~~~~l~~lc~~~~IP~~~~~s--k~eLG~a~G~~~~~~v~~i~~-------~~~~~~~~~~~~~~~~~ 86 (91)
.||.+ ...+..++++++|+++|+.+ ...+.+.+-+...+-++.++. ++.|.+.++...+.|.+
T Consensus 210 ps~~~-l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l~~l~~~~~~~~~Y~~~m~~n~~~l~~ 281 (284)
T 3cx3_A 210 PSPRQ-LTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKTLNPLESDPQNDKTYLENLEENMSILAE 281 (284)
T ss_dssp CCSHH-HHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEEECCCSSSCCCSSCCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCeEEEecCcccCCCCcccHHHHHHHHHHHHHH
Confidence 44534 34577777777777776642 223333333333332333332 34677666666666543
No 67
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=74.14 E-value=12 Score=22.53 Aligned_cols=62 Identities=8% Similarity=0.097 Sum_probs=38.3
Q ss_pred HHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEE-EeCCHhHHhhHhCCCCceEEEEEecCc
Q psy6265 7 GPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYC-YVPSKKDIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 7 kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~-~~~sk~eLG~a~G~~~~~~v~~i~~~~ 71 (91)
+......+.++.+..|.+. ...+..+.+++++++- ......++.+..|....-...+++..|
T Consensus 55 ~~~~~~~~~~v~v~~d~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G 117 (154)
T 3kcm_A 55 AAMAGKPFRMLCVSIDEGG---KVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHG 117 (154)
T ss_dssp HHTTTSSEEEEEEECCTTH---HHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCSBCEEEEECTTS
T ss_pred HHhccCCeEEEEEEcCCcc---hHHHHHHHHHcCCCeeEEecCchHHHHHhCCCCCCeEEEECCCC
Confidence 3333335677777777542 2345666777777763 345666899999987555566666544
No 68
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=74.09 E-value=6.8 Score=27.74 Aligned_cols=18 Identities=0% Similarity=0.154 Sum_probs=11.2
Q ss_pred hhHHHHHhcCCCCEEEeC
Q psy6265 30 CHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 30 ~~l~~lc~~~~IP~~~~~ 47 (91)
..+..++++++|+++|+.
T Consensus 218 ~~l~~~ik~~~v~~if~e 235 (286)
T 3gi1_A 218 KEIQDFVKEYNVKTIFAE 235 (286)
T ss_dssp HHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 446666666666666654
No 69
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=73.63 E-value=9.9 Score=24.27 Aligned_cols=52 Identities=10% Similarity=0.099 Sum_probs=35.2
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe-CCHhHHhhHhCCC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV-PSKKDIGEALGRK 59 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~~ 59 (91)
++..+.++...+.+|.|+.|. +.. +..+++++++++-.+ ....++.++.|..
T Consensus 75 ~~l~~~~~~~~~~vv~Vs~D~-~~~----~~~~~~~~~~~f~~l~D~~~~~~~~~gv~ 127 (179)
T 3ixr_A 75 NLLLPQFEQINATVLGVSRDS-VKS----HDSFCAKQGFTFPLVSDSDAILCKAFDVI 127 (179)
T ss_dssp HHHHHHHHTTTEEEEEEESCC-HHH----HHHHHHHHTCCSCEEECTTCHHHHHTTCE
T ss_pred HHHHHHHHHCCCEEEEEcCCC-HHH----HHHHHHHcCCceEEEECCchHHHHHcCCc
Confidence 445556666678899999884 422 455677778776433 4566899999874
No 70
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=72.95 E-value=6.5 Score=23.24 Aligned_cols=59 Identities=5% Similarity=-0.018 Sum_probs=36.4
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEE-eCCHhHHhhHhCCCCceEEEEEecCc
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCY-VPSKKDIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~~~~v~~i~~~~ 71 (91)
..+.++.|..|.+.. -...+..+.+++++++-. .....++.+..|....=++.+++.+|
T Consensus 66 ~~~~~v~v~~d~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G 125 (145)
T 3erw_A 66 DSVKLVTVNLVNSEQ-NQQVVEDFIKANKLTFPIVLDSKGELMKEYHIITIPTSFLLNEKG 125 (145)
T ss_dssp SSEEEEEEECGGGSS-CHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCCEESEEEEECTTC
T ss_pred CCEEEEEEEccCCcC-CHHHHHHHHHHcCCceeEEEcCchhHHHhcCcCccCeEEEEcCCC
Confidence 457777777665221 123455667778877643 34566899999987554566665554
No 71
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=72.78 E-value=9.4 Score=27.04 Aligned_cols=58 Identities=12% Similarity=0.262 Sum_probs=30.0
Q ss_pred CCCchhHHhhHHHHHhcCCCCEEEeCC------HhHHhhHhCCCCceEEEEEec-CchHHHHHHHHHHHh
Q psy6265 22 DVTPIEIMCHLPAVCEDKDIPYCYVPS------KKDIGEALGRKKPCICVIVKS-TESVAELYEEVKQEI 84 (91)
Q Consensus 22 D~sp~~~~~~l~~lc~~~~IP~~~~~s------k~eLG~a~G~~~~~~v~~i~~-~~~~~~~~~~~~~~~ 84 (91)
..||.+ ...+..++++++|+++|+.+ .+.|.+..|.+ ++.++. ++.|.+.++...+.|
T Consensus 220 eps~~~-l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~----v~~ld~l~~~Y~~~m~~n~~~l 284 (291)
T 1pq4_A 220 EPSAQE-LKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAG----VELLDPLAADWSSNLKAVAQKI 284 (291)
T ss_dssp CCCHHH-HHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCE----EEEECTTCSSHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCe----EEEEcCchhhHHHHHHHHHHHH
Confidence 445544 34577777777777776542 12343444432 333443 235666555555544
No 72
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=72.35 E-value=4.6 Score=30.27 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=49.5
Q ss_pred hhHHHHHHHhCCceEEEEeCCCC--c--h---hHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEe
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVT--P--I---EIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVK 68 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~s--p--~---~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~ 68 (91)
.++|.+|++.|.+.-++|..+.- + . .+. .|...+++++--+.++.+..+-|.-+ ......+|++.
T Consensus 296 ~~eV~~Ale~GAVetLLI~d~l~r~~d~~~r~~~~-~L~e~~~~~Gg~V~ivs~~~~~G~qL-~~lgGiaAiLR 367 (390)
T 3mca_B 296 PNHVLKAFELGAIGELLISDSLFRSSDIATRKKWV-SLVEGVKEINCPVYIFSSLHESGKQL-DLLSGIAAILT 367 (390)
T ss_dssp HHHHHHHHHTTCBSSCEEEETTCCCSCHHHHHHHH-HHHHHHHHTTCCEEEECTTSHHHHHH-HHTTSEEEEBS
T ss_pred HHHHHHHHHcCCCeEEEEecccccCCChhHHHHHH-HHHHHHHhcCCEEEEECCCCCchhhh-hcCCcEEEEEe
Confidence 47899999999999999998763 1 1 122 47777899999999999988888877 45555566654
No 73
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=71.94 E-value=6.3 Score=25.23 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=47.3
Q ss_pred CCceEEEEeCCCCch-hH--HhhHHHHHhcCCCCEEEeC--C-------HhHHhhHhCCCCceEEEEEecCchHHHHHHH
Q psy6265 12 KTIMLCIFAGDVTPI-EI--MCHLPAVCEDKDIPYCYVP--S-------KKDIGEALGRKKPCICVIVKSTESVAELYEE 79 (91)
Q Consensus 12 gka~lViiA~D~sp~-~~--~~~l~~lc~~~~IP~~~~~--s-------k~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~ 79 (91)
+.-+.||+-+|..+. .- .......+++.+|++..++ + ..+|-...+.....-+-.+.+..+..+.|+.
T Consensus 109 ~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~~~~~ 188 (198)
T 1n3y_A 109 DAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQ 188 (198)
T ss_dssp TSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGGGGHHH
T ss_pred CCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCCHHHHHHHHHH
Confidence 446788888887543 11 1234556688999886543 2 5778777776544434556666777788888
Q ss_pred HHHHh
Q psy6265 80 VKQEI 84 (91)
Q Consensus 80 ~~~~~ 84 (91)
|.+.+
T Consensus 189 i~~~i 193 (198)
T 1n3y_A 189 LKEKI 193 (198)
T ss_dssp HHHHH
T ss_pred HHhhe
Confidence 87765
No 74
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=71.86 E-value=18 Score=25.54 Aligned_cols=65 Identities=9% Similarity=0.007 Sum_probs=41.4
Q ss_pred hHHHHHHHhC-CceEEEEeCCCCchhHHhhHHHHHhcCC-CCEEEeCCHhHHhhHhCCCC-ceEEEEEec
Q psy6265 3 STVQGPLQRK-TIMLCIFAGDVTPIEIMCHLPAVCEDKD-IPYCYVPSKKDIGEALGRKK-PCICVIVKS 69 (91)
Q Consensus 3 kev~kai~~g-ka~lViiA~D~sp~~~~~~l~~lc~~~~-IP~~~~~sk~eLG~a~G~~~-~~~v~~i~~ 69 (91)
|-|..+++.| .+.-+++.++..... ...+...++..+ +|+. .-+++.|-+..+... ...++++..
T Consensus 35 ~~v~eal~~~~~i~~l~~~~~~~~~~-~~~l~~~~~~~~~~~v~-~v~~~~l~~ls~~~~~qGv~a~~~~ 102 (274)
T 1ipa_A 35 REIERALQAGIELEQALVWEGGLNPE-EQQVYAALGRVGRLALL-EVSEAVLKKLSVRDNPAGLIALARM 102 (274)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCCCHH-HHHHHHCC-----CEEE-EECHHHHHHHCCSSSCCSEEEEEEC
T ss_pred HHHHHHHhCCCCeEEEEEEcCcccch-HHHHHHHHHhcCCccEE-EeCHHHHHHHhCCCCCCeEEEEEeC
Confidence 5677888877 588889988875422 345666677778 8764 456888988888653 355555553
No 75
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=71.77 E-value=17 Score=23.38 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=44.2
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALG 57 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G 57 (91)
.|+..+.|+++-++.|++-+|-++..-...+. --++.++.+-.+.+|++.-.-+.
T Consensus 15 lkeivreikrqgvrvvllysdqdekrrrerle-efekqgvdvrtvedkedfrenir 69 (162)
T 2l82_A 15 LKEIVREIKRQGVRVVLLYSDQDEKRRRERLE-EFEKQGVDVRTVEDKEDFRENIR 69 (162)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSCHHHHHHHHH-HHHTTTCEEEECCSHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEEEecCchHHHHHHHHH-HHHHcCCceeeeccHHHHHHHHH
Confidence 57888999999999999999998755444444 45788999999999998766554
No 76
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=71.71 E-value=13 Score=21.89 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=39.7
Q ss_pred hHHHHHHHhCCceEEEEeCCCCch---hHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPI---EIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEE 79 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~---~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~ 79 (91)
.+....+++....+||+--+.... ++...+.......++|++.+.+..+......--...+..++..+-+..+....
T Consensus 36 ~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 115 (140)
T 3n53_A 36 KEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSR 115 (140)
T ss_dssp HHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHH
Confidence 466777888888999998665332 23333332222268998876654433332222223344555555444444444
Q ss_pred HH
Q psy6265 80 VK 81 (91)
Q Consensus 80 ~~ 81 (91)
+.
T Consensus 116 i~ 117 (140)
T 3n53_A 116 IE 117 (140)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 77
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=71.64 E-value=9 Score=25.51 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=34.6
Q ss_pred hHH-HHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STV-QGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev-~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
+++ .+.|++-+--++++.+ +.-..-...+..+++. +||++...
T Consensus 25 ~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~ 68 (174)
T 1ytl_A 25 GKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATG 68 (174)
T ss_dssp HHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEET
T ss_pred HHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcc
Confidence 455 7889999999999999 8644556678999999 99998763
No 78
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=70.94 E-value=16 Score=22.51 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=32.5
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe-CCHhHHhhHhCCCC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV-PSKKDIGEALGRKK 60 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~~~ 60 (91)
+..+.++... .+|.|+.| ++. .+..+++++++++-.+ ....++.++.|...
T Consensus 60 ~~~~~~~~~~-~vv~is~d-~~~----~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 111 (159)
T 2a4v_A 60 DNYQELKEYA-AVFGLSAD-SVT----SQKKFQSKQNLPYHLLSDPKREFIGLLGAKK 111 (159)
T ss_dssp HHHHHHTTTC-EEEEEESC-CHH----HHHHHHHHHTCSSEEEECTTCHHHHHHTCBS
T ss_pred HHHHHHHhCC-cEEEEeCC-CHH----HHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence 3344454444 88888888 342 2455677888876543 44568899998753
No 79
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=70.19 E-value=15 Score=22.17 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=36.2
Q ss_pred HHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC----HhHHhhHhCCCCceEEEEEecCc
Q psy6265 7 GPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS----KKDIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 7 kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s----k~eLG~a~G~~~~~~v~~i~~~~ 71 (91)
+......+.++.|..|.++. .+..+.+++++++..+.+ ..++.+..|....=+..+++.+|
T Consensus 56 ~~~~~~~~~vv~v~~d~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G 120 (152)
T 2lrn_A 56 NAFKDKGFTIYGVSTDRREE----DWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEG 120 (152)
T ss_dssp HHHTTTTEEEEEEECCSCHH----HHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTS
T ss_pred HHhccCCeEEEEEEccCCHH----HHHHHHHHhCCCCeEEecccchhHHHHHHhCCCcCCeEEEECCCC
Confidence 33333347777777775443 244455667777654443 57899999976444455665443
No 80
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=70.03 E-value=7.6 Score=29.21 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=47.9
Q ss_pred hhHHHHHHHhCCceEEEEeCCCC--------ch-----------------------------------hHHhhHHHHHhc
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVT--------PI-----------------------------------EIMCHLPAVCED 38 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~s--------p~-----------------------------------~~~~~l~~lc~~ 38 (91)
.++|.+|++.|.+..++|..|.. +. ++...|...+++
T Consensus 305 ~~eV~~Al~~GaVetLLv~d~l~~~r~~~r~~~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~d~ve~L~e~~~~ 384 (437)
T 1dt9_A 305 VEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKK 384 (437)
T ss_dssp HHHHHHHHHSSCCSEEEEESCCCCBCCCC---------CCCBCTTCSSCCCCCC-----------CCCBHHHHHHHTCTT
T ss_pred HHHHHHHHHhCCccEEEEecCcccceEEEEcCCCCceeeeeeccccccccccccCcccCccccccccccHHHHHHHHHHH
Confidence 47899999999999999998865 10 123337788889
Q ss_pred CCCCEEEeCCHhHHhhHhCCCCceEEEEEe
Q psy6265 39 KDIPYCYVPSKKDIGEALGRKKPCICVIVK 68 (91)
Q Consensus 39 ~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~ 68 (91)
+|-.+.++.+..+-|.-+=+.....+|++.
T Consensus 385 ~G~~V~ivs~~~e~G~q~l~~~gGIaAiLR 414 (437)
T 1dt9_A 385 FGATLEIVTDKSQEGSQFVKGFGGIGGILR 414 (437)
T ss_dssp TTSCEEEECSSSHHHHHHHHTTTTEEEECS
T ss_pred cCCEEEEECCCChhHHHHHHhCCCEEEEEe
Confidence 999999999998888662223334445544
No 81
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=69.13 E-value=13 Score=24.00 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=34.3
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
+.++.+.|++-+--++++..-+.-......+..+++..++|++...
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~ 69 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATG 69 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECT
T ss_pred HHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECc
Confidence 3567778888776677776666544556779999999999998653
No 82
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=69.03 E-value=8.9 Score=24.70 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=29.0
Q ss_pred HHHHHHHhCCceEEEEeCCCCch----hHHhhHHHHHhcCCCCEEEeCCHh
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPI----EIMCHLPAVCEDKDIPYCYVPSKK 50 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~----~~~~~l~~lc~~~~IP~~~~~sk~ 50 (91)
++.+.+++.++.+||+++|.... +....+...-++.++|++++....
T Consensus 23 ~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNH 73 (228)
T 1uf3_A 23 KFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPGPQ 73 (228)
T ss_dssp HHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECCTT
T ss_pred HHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCcEEEECCCC
Confidence 34455555578999999998532 111223334445688998877544
No 83
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=68.34 E-value=6 Score=28.43 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=32.7
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+.+++.+.++++.-||.+...+...+...+..+|..++||.+...
T Consensus 52 ~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~ 97 (364)
T 3qel_B 52 ITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIH 97 (364)
T ss_dssp HHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEee
Confidence 4667788887888777776555443344457789999999988644
No 84
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=68.19 E-value=4.7 Score=24.79 Aligned_cols=71 Identities=8% Similarity=0.012 Sum_probs=42.2
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC---HhHHhhHhCCC----Cce--EEEEEecCch--------H-
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS---KKDIGEALGRK----KPC--ICVIVKSTES--------V- 73 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s---k~eLG~a~G~~----~~~--~v~~i~~~~~--------~- 73 (91)
..+.++.|..|. +. .+..+++++++++-...+ ..++.+..|.. ..- +..+++..|. .
T Consensus 69 ~~~~vv~is~d~-~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~ 143 (160)
T 1xvw_A 69 DDSAALAISVGP-PP----THKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPG 143 (160)
T ss_dssp SSEEEEEEESCC-HH----HHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTT
T ss_pred CCcEEEEEeCCC-HH----HHHHHHHhcCCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCC
Confidence 357788888773 32 345566777777644444 67889999875 222 4566665432 1
Q ss_pred -HHHHHHHHHHhhcC
Q psy6265 74 -AELYEEVKQEIGAL 87 (91)
Q Consensus 74 -~~~~~~~~~~~~~~ 87 (91)
+..++++.+.++++
T Consensus 144 ~~~~~~~l~~~l~~l 158 (160)
T 1xvw_A 144 EVRDQRLWTDALAAL 158 (160)
T ss_dssp CCCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHh
Confidence 22456666666554
No 85
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=67.60 E-value=27 Score=25.42 Aligned_cols=78 Identities=13% Similarity=0.087 Sum_probs=47.5
Q ss_pred HHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHHHHhhc
Q psy6265 7 GPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIGA 86 (91)
Q Consensus 7 kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 86 (91)
+.|-+ ++-++|+-++-...+ ..+|-..|++.+.|-+++.+-.||-..-=. ....++++--..-=....+++++.+++
T Consensus 204 ~~la~-~~D~miVVGg~nSSN-T~rL~eia~~~~~~ty~Ie~~~el~~~wl~-~~~~VGITAGASTP~~li~eVi~~l~~ 280 (297)
T 3dnf_A 204 KKLAP-EVDVMIIIGGKNSGN-TRRLYYISKELNPNTYHIETAEELQPEWFR-GVKRVGISAGASTPDWIIEQVKSRIQE 280 (297)
T ss_dssp HHHGG-GSSEEEEESCTTCHH-HHHHHHHHHHHCSSEEEESSGGGCCGGGGT-TCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHh-hCCEEEEECCCCCch-hHHHHHHHHhcCCCEEEeCChHHCCHHHhC-CCCEEEEeecCCCCHHHHHHHHHHHHH
Confidence 44443 466666655544433 578999999999999999999988643221 233455554433334455566665554
Q ss_pred C
Q psy6265 87 L 87 (91)
Q Consensus 87 ~ 87 (91)
+
T Consensus 281 ~ 281 (297)
T 3dnf_A 281 I 281 (297)
T ss_dssp C
T ss_pred h
Confidence 4
No 86
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=67.41 E-value=9.8 Score=24.60 Aligned_cols=75 Identities=11% Similarity=0.057 Sum_probs=47.8
Q ss_pred CCceEEEEeCCCCchhH--HhhHHHHHhcCCCCEEEeCC--------------HhHHhhHhCCCCceEEEEEecCchHHH
Q psy6265 12 KTIMLCIFAGDVTPIEI--MCHLPAVCEDKDIPYCYVPS--------------KKDIGEALGRKKPCICVIVKSTESVAE 75 (91)
Q Consensus 12 gka~lViiA~D~sp~~~--~~~l~~lc~~~~IP~~~~~s--------------k~eLG~a~G~~~~~~v~~i~~~~~~~~ 75 (91)
+..+.+|+-.|..+.+- .......+++.+|++..++- ..+|-+..+.....-+-...+..+..+
T Consensus 107 ~~~~~ivllTDG~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~ 186 (200)
T 1v7p_C 107 SATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLE 186 (200)
T ss_dssp TSEEEEEEEESSCCSCGGGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHH
T ss_pred CCCeEEEEEccCCCCCcccHHHHHHHHHHCCCEEEEEEecccccccccchhhHHHHHHHHhCCccHhcEEEcCCHHHHHH
Confidence 34677888888754321 12344556788998765432 567877777653333445667778888
Q ss_pred HHHHHHHHhhc
Q psy6265 76 LYEEVKQEIGA 86 (91)
Q Consensus 76 ~~~~~~~~~~~ 86 (91)
.|+.|.+.+=.
T Consensus 187 i~~~i~~~ic~ 197 (200)
T 1v7p_C 187 KAGTLGEQIFS 197 (200)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHhhhcC
Confidence 88888877643
No 87
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=66.27 E-value=5.8 Score=23.02 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=26.1
Q ss_pred HHHHHH---hCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 5 VQGPLQ---RKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 5 v~kai~---~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
+.++|+ .|+ .|.+++.|-.. ...++.+|++.+-.+...
T Consensus 27 ~kkal~~l~~G~-~l~V~~dd~~a---~~di~~~~~~~G~~~~~~ 67 (82)
T 3lvj_C 27 VRKTVRNMQPGE-TLLIIADDPAT---TRDIPGFCTFMEHELVAK 67 (82)
T ss_dssp HHHHHHTSCTTC-EEEEEECCTTH---HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhCCCCC-EEEEEECCccH---HHHHHHHHHHCCCEEEEE
Confidence 445554 453 47888888533 467999999999877654
No 88
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=65.93 E-value=13 Score=21.98 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=27.6
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHh---cCCCCEEEeCC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCE---DKDIPYCYVPS 48 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~---~~~IP~~~~~s 48 (91)
.+..+.++++...+||+--+....+-...+..+-+ ..++|++.+.+
T Consensus 41 ~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 41 AKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp HHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEET
T ss_pred HHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeC
Confidence 46677788888889988766533222222222222 45789876553
No 89
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=65.85 E-value=8.3 Score=22.46 Aligned_cols=77 Identities=21% Similarity=0.149 Sum_probs=37.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeCC---HhHHhhHhCCCCceEEEEEecCchHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVPS---KKDIGEALGRKKPCICVIVKSTESVAEL 76 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~s---k~eLG~a~G~~~~~~v~~i~~~~~~~~~ 76 (91)
.+....+++....+||+--+... .++...+.......++|++.+.+ ....-++.. ..+..++..+-+.++.
T Consensus 36 ~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~---~Ga~~~l~KP~~~~~L 112 (122)
T 3gl9_A 36 QIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALS---LGARKVMRKPFSPSQF 112 (122)
T ss_dssp HHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHH---TTCSEEEESSCCHHHH
T ss_pred HHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHh---cChhhhccCCCCHHHH
Confidence 45666777777888887544322 23333333222235688776543 333333332 1223455555554544
Q ss_pred HHHHHH
Q psy6265 77 YEEVKQ 82 (91)
Q Consensus 77 ~~~~~~ 82 (91)
...+..
T Consensus 113 ~~~i~~ 118 (122)
T 3gl9_A 113 IEEVKH 118 (122)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 90
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=65.83 E-value=8.4 Score=26.45 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=32.5
Q ss_pred hHHHHHHHh--CCceEEEEeCCCCch---h----HHhhHHHHHhcCCCCEEEeCCHhH
Q psy6265 3 STVQGPLQR--KTIMLCIFAGDVTPI---E----IMCHLPAVCEDKDIPYCYVPSKKD 51 (91)
Q Consensus 3 kev~kai~~--gka~lViiA~D~sp~---~----~~~~l~~lc~~~~IP~~~~~sk~e 51 (91)
+++++.+++ .++.+||+++|.... + +...+..+.+..++|++.+....|
T Consensus 54 ~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~v~GNHD 111 (330)
T 3ib7_A 54 GELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHD 111 (330)
T ss_dssp HHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCCTTS
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEEeCCCCC
Confidence 456777776 789999999997431 1 222333333456999988776554
No 91
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=65.78 E-value=9.7 Score=23.40 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=35.4
Q ss_pred CceEEEEeCC------------------CCchhHHhhHHHHHhcCCC-CEEEeCCHhHHhhHhCCCCceEEEEEecCc
Q psy6265 13 TIMLCIFAGD------------------VTPIEIMCHLPAVCEDKDI-PYCYVPSKKDIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 13 ka~lViiA~D------------------~sp~~~~~~l~~lc~~~~I-P~~~~~sk~eLG~a~G~~~~~~v~~i~~~~ 71 (91)
.+.++.|..| .++ ..+..+.+++++ ++-...+..++.+..|....=++.+++..|
T Consensus 68 ~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~G 141 (165)
T 3ha9_A 68 EISVIAIDFWTAEALKALGLNKPGYPPPDTP----EMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSS 141 (165)
T ss_dssp TEEEEEEECCSHHHHHHHTCCSTTSCCCCCH----HHHHHHHHHHSCTTSEEEECCSHHHHHTTCCSSSEEEEEETTC
T ss_pred CcEEEEEEecccccccccccccccCCCCCCH----HHHHHHHHHcCCCCeeEEeChHHHHHHhCCCCceEEEEEcCCC
Confidence 5777777777 333 345556677777 554433377899999987554566666544
No 92
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=65.78 E-value=20 Score=21.70 Aligned_cols=61 Identities=10% Similarity=0.087 Sum_probs=34.7
Q ss_pred HHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHh------CCCCceEEEEEecC
Q psy6265 6 QGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEAL------GRKKPCICVIVKST 70 (91)
Q Consensus 6 ~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~------G~~~~~~v~~i~~~ 70 (91)
.+......+.++.|..|-++. .+..+.+++++++-...+..++.+.. |....=+..+++.+
T Consensus 60 ~~~~~~~~v~~v~v~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~ 126 (165)
T 3or5_A 60 QKTWASRGFTFVGIAVNEQLP----NVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDAS 126 (165)
T ss_dssp HHHHTTTTEEEEEEECSCCHH----HHHHHHHHHTCCSCEEECCHHHHHHHHTTSTTCSCSSSEEEEECTT
T ss_pred HHHhccCCeEEEEEECCCCHH----HHHHHHHHcCCCCceEecCHHHHHHHhhhhccCCCCCCeEEEECCC
Confidence 334443347777777775553 24455667777765544555788877 44433345555543
No 93
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=65.57 E-value=23 Score=22.48 Aligned_cols=50 Identities=8% Similarity=0.099 Sum_probs=34.0
Q ss_pred HHHHHHhCCc-eEEEEeCCCCchhHHhhHHHHHhcCCCC--EEEe-CCHhHHhhHhCCC
Q psy6265 5 VQGPLQRKTI-MLCIFAGDVTPIEIMCHLPAVCEDKDIP--YCYV-PSKKDIGEALGRK 59 (91)
Q Consensus 5 v~kai~~gka-~lViiA~D~sp~~~~~~l~~lc~~~~IP--~~~~-~sk~eLG~a~G~~ 59 (91)
..+.++...+ .+|-|+.| ++. .+..+++++++| +-.+ ....+++++.|..
T Consensus 58 ~~~~~~~~gv~~vv~Is~d-~~~----~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~ 111 (167)
T 2wfc_A 58 QAAAIHGKGVDIIACMAVN-DSF----VMDAWGKAHGADDKVQMLADPGGAFTKAVDME 111 (167)
T ss_dssp THHHHHHTTCCEEEEEESS-CHH----HHHHHHHHTTCTTTSEEEECTTSHHHHHTTCE
T ss_pred HHHHHHHCCCCEEEEEeCC-CHH----HHHHHHHhcCCCcceEEEECCCCcHHHHcCCc
Confidence 3445555668 89999988 342 245677888887 6443 4566899999874
No 94
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=64.92 E-value=17 Score=20.59 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=39.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCC-c---hhHHhhHHHHHhcCCCCEEEeCCHh---HHhhHhCCCCceEEEEEecCchHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVT-P---IEIMCHLPAVCEDKDIPYCYVPSKK---DIGEALGRKKPCICVIVKSTESVAE 75 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~s-p---~~~~~~l~~lc~~~~IP~~~~~sk~---eLG~a~G~~~~~~v~~i~~~~~~~~ 75 (91)
.+..+.++++...+||+--+.. . .++...+.......++|++.+ +.. ..-++.. ..+..++..+-+..+
T Consensus 39 ~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~---~g~~~~l~kp~~~~~ 114 (127)
T 2gkg_A 39 KGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLK---AHADEYVAKPVDADQ 114 (127)
T ss_dssp HHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHST---TCCSEEEESSCCHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCchhHHHHHH---hCcchheeCCCCHHH
Confidence 4566777788888998876553 2 233333332222468998877 433 2233322 223345555555444
Q ss_pred HHHHHHH
Q psy6265 76 LYEEVKQ 82 (91)
Q Consensus 76 ~~~~~~~ 82 (91)
....+..
T Consensus 115 l~~~i~~ 121 (127)
T 2gkg_A 115 LVERAGA 121 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 95
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=64.69 E-value=27 Score=22.93 Aligned_cols=68 Identities=9% Similarity=0.129 Sum_probs=41.2
Q ss_pred HHHHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEe-CCHhHHhhHhCCCCceEEEEEecCc
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYV-PSKKDIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~~~~~~v~~i~~~~ 71 (91)
+..+..+...+.+|.|..|-.. .+-...+..+++++++++-.+ ....++.+..|....-...+++..|
T Consensus 83 ~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G 154 (218)
T 3u5r_E 83 KFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAACTPDFFLYDRER 154 (218)
T ss_dssp HHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCCEESEEEEECTTC
T ss_pred HHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCCCCCCeEEEECCCC
Confidence 3444444444778888775210 022345667778888877443 4567899999987544566665543
No 96
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=64.52 E-value=6.9 Score=23.11 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=27.3
Q ss_pred hHHHHHHH-hCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 3 STVQGPLQ-RKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 3 kev~kai~-~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
+..++.+. .| -.|.|++.| | .....++.+|++.|-.+...
T Consensus 19 kkal~~l~~~G-~~L~V~~dd--~-~a~~dI~~~~~~~G~~v~~~ 59 (87)
T 3hz7_A 19 KKALAELGEAG-GVVTVLVDN--D-ISRQNLQKMAEGMGYQSEYL 59 (87)
T ss_dssp HHHHHTTGGGC-CEEEEEESS--H-HHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHhccCCC-CEEEEEECC--c-cHHHHHHHHHHHCCCEEEEE
Confidence 34444444 55 468888888 4 23567999999999887654
No 97
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=64.49 E-value=22 Score=21.81 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=24.8
Q ss_pred hHHHHHHHhC--CceEEEEeCCCCchhHHhhHHHHHhcCCCCE
Q psy6265 3 STVQGPLQRK--TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPY 43 (91)
Q Consensus 3 kev~kai~~g--ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~ 43 (91)
++..+.+... ++.+|.|+.|-.. +-...+..+++++++++
T Consensus 57 ~~l~~~~~~~~~~~~vv~is~d~~~-d~~~~~~~~~~~~~~~~ 98 (174)
T 1xzo_A 57 TDLQKKLKAENIDVRIISFSVDPEN-DKPKQLKKFAANYPLSF 98 (174)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCTTT-CCHHHHHHHHTTSCCCG
T ss_pred HHHHHHhhhcCCcEEEEEEEeCCCC-CCHHHHHHHHHHcCCCC
Confidence 3444455443 4888888887421 11234667888999886
No 98
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=64.30 E-value=10 Score=23.24 Aligned_cols=45 Identities=7% Similarity=0.048 Sum_probs=29.2
Q ss_pred CceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC-CH---hHHhhHhCC
Q psy6265 13 TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP-SK---KDIGEALGR 58 (91)
Q Consensus 13 ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~-sk---~eLG~a~G~ 58 (91)
++.+|.|.-|-.. +-...+..++++++.++..+. +. .++.+..|.
T Consensus 72 ~v~vv~is~d~~~-d~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv 120 (172)
T 2k6v_A 72 RVQVIFVSVDPER-DPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGV 120 (172)
T ss_dssp TEEEEEEESCTTT-CCHHHHHHHHHHHCTTEEEECCCHHHHHHHHHHHTC
T ss_pred CEEEEEEEECCCC-CCHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHhcCe
Confidence 5778888876432 123446677888888886655 44 367777774
No 99
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=62.78 E-value=29 Score=25.63 Aligned_cols=71 Identities=11% Similarity=0.108 Sum_probs=42.2
Q ss_pred ceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHHHHhhc
Q psy6265 14 IMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIGA 86 (91)
Q Consensus 14 a~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 86 (91)
+-++|+-++-..++ ..+|-..|++.+.|-+++.+-.||-..-=. ....++++--..-=....+++++.+++
T Consensus 226 vD~miVVGg~nSSN-T~rL~eia~~~g~~ty~Ie~~~el~~~wl~-g~~~VGITAGASTP~~lieeVi~~l~~ 296 (328)
T 3szu_A 226 AEVVLVVGSKNSSN-SNRLAELAQRMGKRAFLIDDAKDIQEEWVK-EVKCVGVTAGASAPDILVQNVVARLQQ 296 (328)
T ss_dssp CSEEEEECCTTCHH-HHHHHHHHHHTTCEEEEESSGGGCCHHHHT-TCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCch-HHHHHHHHHHhCCCEEEeCChHHCCHHHhC-CCCEEEEeecCCCCHHHHHHHHHHHHH
Confidence 55555555543323 578999999999999999999987543211 123455544333223345555555544
No 100
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=62.54 E-value=31 Score=23.00 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=32.4
Q ss_pred HHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC---C-------HhHHhhHhCCC
Q psy6265 7 GPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP---S-------KKDIGEALGRK 59 (91)
Q Consensus 7 kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~---s-------k~eLG~a~G~~ 59 (91)
..|..-+--|||......+.+....| ++.+||++.+. + -..||+++|++
T Consensus 53 E~i~~l~PDlIi~~~~~~~~~~~~~L----~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (255)
T 3md9_A 53 EGILAMKPTMLLVSELAQPSLVLTQI----ASSGVNVVTVPGQTTPESVAMKINAVATALHQT 111 (255)
T ss_dssp HHHHTTCCSEEEEETTCSCHHHHHHH----HHTTCEEEEECCCCSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHccCCCEEEEcCCcCchhHHHHH----HHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 45556667788877765443333433 57889998774 2 24689999975
No 101
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=62.26 E-value=11 Score=23.44 Aligned_cols=71 Identities=10% Similarity=0.194 Sum_probs=43.2
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCC-CEEEeC-C-HhHHhhHhCCCC------ceEEEEEecCchH---------
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDI-PYCYVP-S-KKDIGEALGRKK------PCICVIVKSTESV--------- 73 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~I-P~~~~~-s-k~eLG~a~G~~~------~~~v~~i~~~~~~--------- 73 (91)
..+.+|.|+.|. +. .+..+++++++ ++-.+. . ..+++++.|... .-+..+++..|..
T Consensus 76 ~~~~vv~is~d~-~~----~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~ 150 (166)
T 3p7x_A 76 EEGIVLTISADL-PF----AQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEG 150 (166)
T ss_dssp TTSEEEEEESSC-HH----HHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECSBT
T ss_pred CCCEEEEEECCC-HH----HHHHHHHHcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcCCc
Confidence 457888888873 42 24566778888 665443 3 468999999753 2234556554321
Q ss_pred --HHHHHHHHHHhhcC
Q psy6265 74 --AELYEEVKQEIGAL 87 (91)
Q Consensus 74 --~~~~~~~~~~~~~~ 87 (91)
...++++.+.++++
T Consensus 151 ~~~~~~~~il~~l~~l 166 (166)
T 3p7x_A 151 TDFPDFDAALAAYKNI 166 (166)
T ss_dssp TSCCCHHHHHHHHHTC
T ss_pred ccCCCHHHHHHHHhcC
Confidence 23467777777653
No 102
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=61.98 E-value=15 Score=20.95 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=37.4
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEE 79 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~ 79 (91)
.+....++++...+||+--+... .++...+.......++|++.+.+..+-.....--...+...+..+-+.++....
T Consensus 35 ~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (124)
T 1mb3_A 35 LSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLET 114 (124)
T ss_dssp HHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 35566677777888888755432 233333322112347888876543322111100011233455555555555555
Q ss_pred HHHHh
Q psy6265 80 VKQEI 84 (91)
Q Consensus 80 ~~~~~ 84 (91)
+...+
T Consensus 115 i~~~~ 119 (124)
T 1mb3_A 115 IKRLL 119 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 103
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=61.88 E-value=22 Score=20.92 Aligned_cols=55 Identities=5% Similarity=0.025 Sum_probs=37.4
Q ss_pred ceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC----HhHHhhHhCCCCceEEEEEecCch
Q psy6265 14 IMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS----KKDIGEALGRKKPCICVIVKSTES 72 (91)
Q Consensus 14 a~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s----k~eLG~a~G~~~~~~v~~i~~~~~ 72 (91)
+.++.+.-|.++ ..+..+.+++++++..+.+ ..++.+..|....=+..+++.+|.
T Consensus 68 ~~~v~v~~d~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~ 126 (148)
T 3fkf_A 68 FAMLGISLDIDR----EAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGK 126 (148)
T ss_dssp EEEEEEECCSCH----HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSB
T ss_pred eEEEEEECCCCH----HHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCe
Confidence 677777777654 2355566888888766554 568999999876555667766543
No 104
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=61.79 E-value=14 Score=23.00 Aligned_cols=74 Identities=12% Similarity=0.249 Sum_probs=45.1
Q ss_pred HHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe-CCHhHHhhHhCCC------------CceEEEEEecCchH--
Q psy6265 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV-PSKKDIGEALGRK------------KPCICVIVKSTESV-- 73 (91)
Q Consensus 9 i~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~~------------~~~~v~~i~~~~~~-- 73 (91)
.+...+.++.|+.|. +.. +..+++++++|+-.+ ....+++++.|.. .+ +.-+++..|..
T Consensus 60 ~~~~~~~~v~vs~d~-~~~----~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p-~tflID~~G~I~~ 133 (157)
T 4g2e_A 60 FNQVNAVVLGISVDP-PFS----NKAFKEHNKLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKR-AVFVIDKEGKVRY 133 (157)
T ss_dssp GGGCSSEEEEEESSC-HHH----HHHHHHHTTCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECE-EEEEECTTSBEEE
T ss_pred ccccCceEeeecccc-hhH----HHHHHHHcCCcEEEEEcCCcHHHHHcCCccccccCCCcceeee-eEEEECCCCEEEE
Confidence 344457777787773 422 346778899987554 3456888888752 12 23456654421
Q ss_pred ---------HHHHHHHHHHhhcCC
Q psy6265 74 ---------AELYEEVKQEIGALP 88 (91)
Q Consensus 74 ---------~~~~~~~~~~~~~~~ 88 (91)
+..++++.+.|++|.
T Consensus 134 ~~~~~~~~~~~~~~eil~~l~~Ls 157 (157)
T 4g2e_A 134 KWVSDDPTKEPPYDEIEKVVKSLS 157 (157)
T ss_dssp EEEESSTTCCCCHHHHHHHHHHTC
T ss_pred EEECCCCCCCCCHHHHHHHHHHhC
Confidence 234778888887763
No 105
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=61.79 E-value=34 Score=24.33 Aligned_cols=62 Identities=11% Similarity=-0.012 Sum_probs=48.2
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCC-EEEeCCHhHHhhHhCCCCceEEEEE
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIP-YCYVPSKKDIGEALGRKKPCICVIV 67 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP-~~~~~sk~eLG~a~G~~~~~~v~~i 67 (91)
|+..+..-|--.+++++.+.++.+ ...+...|++.|.. ++.+.|.+||-+|.-.... .+++.
T Consensus 134 qi~ea~~~GAD~VlLi~a~L~~~~-l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~ga~-iIGin 196 (272)
T 3tsm_A 134 QVYEARSWGADCILIIMASVDDDL-AKELEDTAFALGMDALIEVHDEAEMERALKLSSR-LLGVN 196 (272)
T ss_dssp HHHHHHHTTCSEEEEETTTSCHHH-HHHHHHHHHHTTCEEEEEECSHHHHHHHTTSCCS-EEEEE
T ss_pred HHHHHHHcCCCEEEEcccccCHHH-HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCC-EEEEC
Confidence 677788889888999999998744 56788899999985 4678999999998865533 34554
No 106
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=61.41 E-value=22 Score=20.85 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=15.8
Q ss_pred eEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 15 MLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 15 ~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
.++|...+.=|. =.+...+-++++|||..+
T Consensus 5 ~I~vYs~~~Cp~--C~~aK~~L~~~gi~y~~i 34 (92)
T 2lqo_A 5 ALTIYTTSWCGY--CLRLKTALTANRIAYDEV 34 (92)
T ss_dssp CEEEEECTTCSS--HHHHHHHHHHTTCCCEEE
T ss_pred cEEEEcCCCCHh--HHHHHHHHHhcCCceEEE
Confidence 344444443342 233555667788887653
No 107
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=61.06 E-value=27 Score=21.70 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=35.4
Q ss_pred HHHHHHHhCCce-EEEEeCCCCchhHHhhHHHHHhcCCC--CEEEe-CCHhHHhhHhCCC
Q psy6265 4 TVQGPLQRKTIM-LCIFAGDVTPIEIMCHLPAVCEDKDI--PYCYV-PSKKDIGEALGRK 59 (91)
Q Consensus 4 ev~kai~~gka~-lViiA~D~sp~~~~~~l~~lc~~~~I--P~~~~-~sk~eLG~a~G~~ 59 (91)
+..+.++...+. ++.|+.|. +. .+..+++++++ |+-.+ ....+++++.|..
T Consensus 61 ~~~~~~~~~~v~~vv~Is~d~-~~----~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
T 1tp9_A 61 EKAGELKSKGVTEILCISVND-PF----VMKAWAKSYPENKHVKFLADGSATYTHALGLE 115 (162)
T ss_dssp HHHHHHHHTTCCCEEEEESSC-HH----HHHHHHHTCTTCSSEEEEECTTSHHHHHTTCE
T ss_pred HHHHHHHHCCCCEEEEEECCC-HH----HHHHHHHhcCCCCCeEEEECCCchHHHHcCcc
Confidence 444555666688 99999883 42 34567788888 77554 3456899999875
No 108
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=60.69 E-value=23 Score=20.83 Aligned_cols=79 Identities=10% Similarity=-0.023 Sum_probs=41.1
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeCCHhH---HhhHhCCCCceEEEEEecCchHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVPSKKD---IGEALGRKKPCICVIVKSTESVAEL 76 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~sk~e---LG~a~G~~~~~~v~~i~~~~~~~~~ 76 (91)
.+.+..++++...+||+--+... .++...+.......++|++.+.+..+ .-++.. ..+..++..+-+.++.
T Consensus 38 ~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~---~ga~~~l~KP~~~~~L 114 (136)
T 3t6k_A 38 EEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFE---AGANDYLAKPFEPQEL 114 (136)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHH---HTCSEEEETTCCHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHh---cCcceEEeCCCCHHHH
Confidence 46677788888888888655432 23344443322345789876654332 222221 1223455555444444
Q ss_pred HHHHHHHh
Q psy6265 77 YEEVKQEI 84 (91)
Q Consensus 77 ~~~~~~~~ 84 (91)
...+...+
T Consensus 115 ~~~i~~~l 122 (136)
T 3t6k_A 115 VYRVKNIL 122 (136)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 109
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=60.64 E-value=6.7 Score=23.63 Aligned_cols=57 Identities=7% Similarity=0.120 Sum_probs=34.3
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCCCE-EE-eCC---HhHHhhHhCCCCceEEEEEecCch
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPY-CY-VPS---KKDIGEALGRKKPCICVIVKSTES 72 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~-~~-~~s---k~eLG~a~G~~~~~~v~~i~~~~~ 72 (91)
..+.+|.|+.|-++ ..+....+++++++ .. ... ..++.+..|....=+..+++.+|.
T Consensus 64 ~~~~vv~vs~d~~~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~ 125 (143)
T 4fo5_A 64 DKIAMCSISMDEKE----SIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGV 125 (143)
T ss_dssp TTEEEEEEECCSCH----HHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSB
T ss_pred CCEEEEEEEccCCH----HHHHHHHHHhCCCCceeeecccccchHHHHHcCCCCCCcEEEECCCCE
Confidence 34677777777554 23455667888875 22 222 257888888764444666775553
No 110
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=60.33 E-value=2 Score=24.65 Aligned_cols=37 Identities=8% Similarity=0.206 Sum_probs=24.3
Q ss_pred HHHHHHhCCc--eEEEEeCCCCchhHHhhHHHHHhcCCCCEE
Q psy6265 5 VQGPLQRKTI--MLCIFAGDVTPIEIMCHLPAVCEDKDIPYC 44 (91)
Q Consensus 5 v~kai~~gka--~lViiA~D~sp~~~~~~l~~lc~~~~IP~~ 44 (91)
+.++|++-+. .|.+++.|-.. ...++.+|++.|-.+.
T Consensus 23 ~k~al~~l~~G~~L~V~~dd~~a---~~di~~~~~~~G~~~~ 61 (78)
T 1pav_A 23 LIKAYKQAKVGEVISVYSTDAGT---KKDAPAWIQKSGQELV 61 (78)
T ss_dssp HHHHHTTSCTTCCEECCBSSSCH---HHHHHHHHHHHTEEEC
T ss_pred HHHHHHcCCCCCEEEEEECCccH---HHHHHHHHHHCCCEEE
Confidence 4455554332 37888888543 4679999999886553
No 111
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=60.15 E-value=21 Score=20.28 Aligned_cols=81 Identities=12% Similarity=0.085 Sum_probs=37.5
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhc---CCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHH
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCED---KDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEV 80 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~---~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~ 80 (91)
+....++++...++|+--+....+-...+..+.+. .++|++.+.+..+-.....--...+...+..+-+.++....+
T Consensus 37 ~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i 116 (127)
T 2jba_A 37 SAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARI 116 (127)
T ss_dssp HHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHH
T ss_pred HHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHH
Confidence 34444556667777776543221212223333332 578987765433322222222233345555555545444444
Q ss_pred HHHh
Q psy6265 81 KQEI 84 (91)
Q Consensus 81 ~~~~ 84 (91)
...+
T Consensus 117 ~~~~ 120 (127)
T 2jba_A 117 KAVM 120 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 112
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=60.05 E-value=9.8 Score=28.63 Aligned_cols=44 Identities=7% Similarity=-0.059 Sum_probs=31.5
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
++++.+.+++-+++-|+||+|.++ . ...|..+=...+|+++...
T Consensus 268 ~rqIk~~vk~~~lksVFIATDa~~-~-~~ELk~~L~~~~v~vv~~~ 311 (362)
T 3zy2_A 268 LEQIVEKVGSIGAKSVFVASDKDH-M-IDEINEALKPYEIEAHRQE 311 (362)
T ss_dssp HHHHHHHHHHHTCSEEEEEESSCC-C-HHHHHHHHGGGTCCEECCS
T ss_pred HHHHHHHHHhcCCcEEEEecCCHH-H-HHHHHHHhhccCceEEEeC
Confidence 356666677768999999999876 4 4556555566788887543
No 113
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=59.14 E-value=29 Score=23.26 Aligned_cols=50 Identities=10% Similarity=0.055 Sum_probs=35.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchh---------HHhhHHHHHhcCCCCEEEeCCHhHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIE---------IMCHLPAVCEDKDIPYCYVPSKKDI 52 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~---------~~~~l~~lc~~~~IP~~~~~sk~eL 52 (91)
+++++.+.+.+..+||+++|..... ....+...-+..++|+..+....|.
T Consensus 41 ~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~ 99 (322)
T 2nxf_A 41 RDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWGNHEF 99 (322)
T ss_dssp HHHHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHTTCSEEEECCCHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCccCCCCCcchHHHHHHHHHHHHHHhcCCcEEEecCCCCc
Confidence 3455566678899999999986422 1233555556678999998887776
No 114
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=59.00 E-value=8.6 Score=24.43 Aligned_cols=45 Identities=9% Similarity=0.191 Sum_probs=30.8
Q ss_pred HHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe-CCHhHHhhHhCC
Q psy6265 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV-PSKKDIGEALGR 58 (91)
Q Consensus 9 i~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~ 58 (91)
.++..+.++.|+.|. +.. +..+++++++|+-.+ ....+++++.|.
T Consensus 63 ~~~~~v~vv~is~d~-~~~----~~~~~~~~~~~fp~l~D~~~~v~~~ygv 108 (164)
T 4gqc_A 63 LEKANAEVLAISVDS-PWC----LKKFKDENRLAFNLLSDYNREVIKLYNV 108 (164)
T ss_dssp GGGSSSEEEEEESSC-HHH----HHHHHHHTTCCSEEEECTTSHHHHHTTC
T ss_pred hhccCceEEEecCCC-HHH----HHHHHHhcCcccceeecCchHHHHHcCC
Confidence 445557788888773 422 345778899987543 456689999985
No 115
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=58.60 E-value=11 Score=23.21 Aligned_cols=74 Identities=16% Similarity=0.114 Sum_probs=41.1
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCC---------ceEEE--EEecCchHHHHHHHH
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKK---------PCICV--IVKSTESVAELYEEV 80 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~---------~~~v~--~i~~~~~~~~~~~~~ 80 (91)
..+.++++.-|++..+-...+.....+.++|++.+.+|.+|-..-.... ...+. .-..+....+.|+.+
T Consensus 80 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l 159 (165)
T 2wji_A 80 EKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAI 159 (165)
T ss_dssp HCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHH
T ss_pred CCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHH
Confidence 3577788877876432222233333457899999999988854322110 01111 112345567778777
Q ss_pred HHHhh
Q psy6265 81 KQEIG 85 (91)
Q Consensus 81 ~~~~~ 85 (91)
.+.++
T Consensus 160 ~~~~~ 164 (165)
T 2wji_A 160 SIAVK 164 (165)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 77664
No 116
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=58.56 E-value=26 Score=21.84 Aligned_cols=68 Identities=9% Similarity=0.158 Sum_probs=40.3
Q ss_pred HHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCH--hHHhhHhCCCCceEEEEEecCchHHHHHHHHHHHhh
Q psy6265 8 PLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSK--KDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIG 85 (91)
Q Consensus 8 ai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk--~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 85 (91)
....|+.+.|+=++|-+ ++ ..+...+++.++|+..+-+. -|+ --...++++ + ++...+.+|++...++
T Consensus 49 W~~~g~~KiVlk~~~e~--el-~~l~~~a~~~gl~~~~i~DAG~Tei----~~gs~Tvla-i--gP~~~~~vd~itg~Lk 118 (120)
T 1xty_A 49 WLHQGQPKIIVKVNSLD--EI-ISRAKKAETMNLPFSIIEDAGKTQL----EPGTITCLG-I--GPAPENLVDSITGDLK 118 (120)
T ss_dssp HHHTTCCEEEEEESSHH--HH-HHHHHHHHHTTCCEEEEECCSSSSS----CTTCEEEEE-E--EEEEHHHHHHHHTTCE
T ss_pred HHHCCCcEEEEecCCHH--HH-HHHHHHHHHCCCCEEEEEcCCcccc----CCCCeEEEE-e--ccCCHHHHHHHhCCCC
Confidence 34578899998888742 44 45888889999997655332 111 011233344 3 3333556777765543
No 117
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=58.51 E-value=19 Score=20.93 Aligned_cols=78 Identities=8% Similarity=0.003 Sum_probs=39.5
Q ss_pred hHHHHHHHhCCceEEEEeCCCCch---hHHhhHHHHHhcCCCCEEEeCC---HhHHhhHhCCCCceEEEEEecCchHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPI---EIMCHLPAVCEDKDIPYCYVPS---KKDIGEALGRKKPCICVIVKSTESVAEL 76 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~---~~~~~l~~lc~~~~IP~~~~~s---k~eLG~a~G~~~~~~v~~i~~~~~~~~~ 76 (91)
.+....+++....+||+--+.... ++...+.......++|++.+.+ ....-++... .+..++..+-+.++.
T Consensus 44 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~---g~~~~l~kP~~~~~l 120 (143)
T 3cnb_A 44 FDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVAL---GAETCFGKPLNFTLL 120 (143)
T ss_dssp HHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHT---TCSEEEESSCCHHHH
T ss_pred HHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhc---CCcEEEeCCCCHHHH
Confidence 456777888888899987665332 2333332211245788876543 3333344322 123444455444444
Q ss_pred HHHHHHH
Q psy6265 77 YEEVKQE 83 (91)
Q Consensus 77 ~~~~~~~ 83 (91)
...+...
T Consensus 121 ~~~i~~~ 127 (143)
T 3cnb_A 121 EKTIKQL 127 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 118
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=58.30 E-value=18 Score=21.18 Aligned_cols=74 Identities=8% Similarity=0.079 Sum_probs=39.4
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcC-CCCEEEeCC---HhHHhhHhCCCCceEEEEEecCc-hHHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDK-DIPYCYVPS---KKDIGEALGRKKPCICVIVKSTE-SVAELY 77 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~-~IP~~~~~s---k~eLG~a~G~~~~~~v~~i~~~~-~~~~~~ 77 (91)
.+....+++....+|| -.|.+..++...+... . ++|++.+.+ ....-+++.. .+..++..+- +.++..
T Consensus 52 ~~al~~l~~~~~dlvi-~~~~~g~~~~~~l~~~---~~~~~ii~ls~~~~~~~~~~~~~~---g~~~~l~kP~~~~~~l~ 124 (137)
T 2pln_A 52 EDGEYLMDIRNYDLVM-VSDKNALSFVSRIKEK---HSSIVVLVSSDNPTSEEEVHAFEQ---GADDYIAKPYRSIKALV 124 (137)
T ss_dssp HHHHHHHHHSCCSEEE-ECSTTHHHHHHHHHHH---STTSEEEEEESSCCHHHHHHHHHT---TCSEEEESSCSCHHHHH
T ss_pred HHHHHHHHcCCCCEEE-EcCccHHHHHHHHHhc---CCCccEEEEeCCCCHHHHHHHHHc---CCceeeeCCCCCHHHHH
Confidence 4566777778888888 5555544555555433 5 788876543 2333344322 1234444454 544444
Q ss_pred HHHHHH
Q psy6265 78 EEVKQE 83 (91)
Q Consensus 78 ~~~~~~ 83 (91)
..+...
T Consensus 125 ~~i~~~ 130 (137)
T 2pln_A 125 ARIEAR 130 (137)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 119
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=58.23 E-value=27 Score=20.79 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=37.8
Q ss_pred HHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEE-eCCHhHHhhHhCCCCceEEEEEecC
Q psy6265 5 VQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCY-VPSKKDIGEALGRKKPCICVIVKST 70 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~~~~v~~i~~~ 70 (91)
..+......+.++.|..|.++. .+..+.+++++++-. .....++.+..|....=+..+++..
T Consensus 53 l~~~~~~~~~~~v~v~~d~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~ 115 (152)
T 3gl3_A 53 MQAKYKAKGFQVVAVNLDAKTG----DAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMPTSFLIDRN 115 (152)
T ss_dssp HHHHHGGGTEEEEEEECCSSHH----HHHHHHHHSCCCSEEEECTTCHHHHHTTCCSSSEEEEECTT
T ss_pred HHHHhhcCCeEEEEEECCCCHH----HHHHHHHHcCCCCceeECCcchhHHHcCCCCCCeEEEECCC
Confidence 3344444447777777776543 344566777777643 4455688999997655455666543
No 120
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=58.04 E-value=25 Score=20.45 Aligned_cols=78 Identities=6% Similarity=0.043 Sum_probs=39.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCCch---hHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPI---EIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEE 79 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~---~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~ 79 (91)
.+..+.++++...+||+--+.... ++...+.......++|++.+.+..+......--...+..++..+-+.++..+.
T Consensus 41 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 120 (142)
T 3cg4_A 41 GQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEK 120 (142)
T ss_dssp HHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHH
Confidence 466778888888999987665322 23333322112456888776544322111111123345566655444443333
Q ss_pred H
Q psy6265 80 V 80 (91)
Q Consensus 80 ~ 80 (91)
+
T Consensus 121 i 121 (142)
T 3cg4_A 121 T 121 (142)
T ss_dssp H
T ss_pred H
Confidence 3
No 121
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=57.63 E-value=18 Score=23.91 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=17.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP 25 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp 25 (91)
.++++.++..++.+||+++|...
T Consensus 22 ~~~l~~~~~~~~D~vi~~GDl~~ 44 (260)
T 2yvt_A 22 PKLKGVIAEKQPDILVVVGNILK 44 (260)
T ss_dssp HHHHHHHHHHCCSEEEEESCCCC
T ss_pred HHHHHHHHhcCCCEEEECCCCCC
Confidence 35566666678999999999864
No 122
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=57.60 E-value=32 Score=21.46 Aligned_cols=46 Identities=7% Similarity=0.052 Sum_probs=31.2
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCc-------hhHHhhHHHHHhcCCCCEEEeC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTP-------IEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp-------~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
+++.++.+++..++++++..-..+ ..+-..+..+|++++++++...
T Consensus 88 l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~ 140 (190)
T 1ivn_A 88 LRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFF 140 (190)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECCT
T ss_pred HHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEccH
Confidence 356677787766887777532222 1344557889999999998775
No 123
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=57.30 E-value=46 Score=23.17 Aligned_cols=62 Identities=6% Similarity=0.130 Sum_probs=36.3
Q ss_pred CCCchhHHhhHHHHHhcCCCCEEEeCC--HhHHhhHhCCCCceEEEEEecCc--------hHHHHHHHHHHHh
Q psy6265 22 DVTPIEIMCHLPAVCEDKDIPYCYVPS--KKDIGEALGRKKPCICVIVKSTE--------SVAELYEEVKQEI 84 (91)
Q Consensus 22 D~sp~~~~~~l~~lc~~~~IP~~~~~s--k~eLG~a~G~~~~~~v~~i~~~~--------~~~~~~~~~~~~~ 84 (91)
+.||.+ ...+..++++++|+++++.+ ...+.+.+-+...+-++.++.-+ .|.+.++...+.|
T Consensus 206 eps~~~-l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~ld~l~~~~~~~~~~Y~~~m~~n~~~l 277 (284)
T 2prs_A 206 QPGAQR-LHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTLDPLGTNIKLGKTSYSEFLSQLANQY 277 (284)
T ss_dssp CCCHHH-HHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEEECCTTCTTSCCSTTHHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEeccCcccCCCCcccHHHHHHHHHHHH
Confidence 344534 45688888999999988763 33556666655555555554311 4655555544443
No 124
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=57.18 E-value=28 Score=20.95 Aligned_cols=76 Identities=14% Similarity=0.017 Sum_probs=39.9
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeC---CHhHHhhHhCCCCceEEEEEecCchHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVP---SKKDIGEALGRKKPCICVIVKSTESVAEL 76 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~---sk~eLG~a~G~~~~~~v~~i~~~~~~~~~ 76 (91)
.+.+..+++....+||+--+... .++...+.......++|++.+. +....-++.. ..+..++..+-+.++.
T Consensus 41 ~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~---~g~~~~l~KP~~~~~l 117 (154)
T 3gt7_A 41 REAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLE---CGADDFITKPCKDVVL 117 (154)
T ss_dssp HHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHH---HCCSEEEESSCCHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHH---CCCCEEEeCCCCHHHH
Confidence 46677888888999999765432 2333333322223678987654 3334444432 1233445555443433
Q ss_pred HHHHH
Q psy6265 77 YEEVK 81 (91)
Q Consensus 77 ~~~~~ 81 (91)
...+.
T Consensus 118 ~~~i~ 122 (154)
T 3gt7_A 118 ASHVK 122 (154)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 125
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=57.04 E-value=39 Score=23.63 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=44.4
Q ss_pred HHHHHHHhCCceEEEEeCCC--CchhHHhhHHHHHhcCCCCEEEeCCHhHHh--------------hHhCCCCceEEEEE
Q psy6265 4 TVQGPLQRKTIMLCIFAGDV--TPIEIMCHLPAVCEDKDIPYCYVPSKKDIG--------------EALGRKKPCICVIV 67 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~--sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG--------------~a~G~~~~~~v~~i 67 (91)
.+...++.-.+-++++-.+- ++.+ ........+..++|++.+.+|.+|- +.+|......-..-
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~-~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA 163 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRD-EEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISA 163 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHH-HHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBT
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchh-HHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 44555555444444443321 2222 2222556667899999998887763 12221111111122
Q ss_pred ecCchHHHHHHHHHHHhhcCC
Q psy6265 68 KSTESVAELYEEVKQEIGALP 88 (91)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~ 88 (91)
..+....+.++.+.+.+...|
T Consensus 164 ~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 164 LKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp TTTBSHHHHHHHHHHHSCBCC
T ss_pred CCCCCHHHHHHHHHHhCccCC
Confidence 344556788888888876543
No 126
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=56.69 E-value=35 Score=22.48 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=37.8
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcC-------CCCEEEe-CCHhHHhhHhCCC-----CceEEEEEecC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDK-------DIPYCYV-PSKKDIGEALGRK-----KPCICVIVKST 70 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~-------~IP~~~~-~sk~eLG~a~G~~-----~~~~v~~i~~~ 70 (91)
+..+..+...+.+|.|..| ++.. +..++++. ++++-.+ ....++.++.|.. ..-...+++..
T Consensus 77 ~l~~~~~~~~v~vv~Is~D-~~~~----~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~ 151 (213)
T 2i81_A 77 KALDAFHERNVELLGCSVD-SKYT----HLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMN 151 (213)
T ss_dssp HTHHHHHHTTEEEEEEESS-CHHH----HHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTT
T ss_pred HHHHHHHHCCCEEEEEeCC-CHHH----HHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCC
Confidence 4445566667999999988 3422 34455555 5665433 3466899999976 33335555543
No 127
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=55.70 E-value=31 Score=20.71 Aligned_cols=60 Identities=8% Similarity=-0.014 Sum_probs=33.9
Q ss_pred CCceEEEEeCCCCc--hhHHhhHHHHHhcCCCCEEE-eCCHh-----HHhhHhCCCCceEEEEEecCc
Q psy6265 12 KTIMLCIFAGDVTP--IEIMCHLPAVCEDKDIPYCY-VPSKK-----DIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 12 gka~lViiA~D~sp--~~~~~~l~~lc~~~~IP~~~-~~sk~-----eLG~a~G~~~~~~v~~i~~~~ 71 (91)
..+.+|-|..|-.. .+-...+..+++++++++-. ..... ++.+..|....=+..+++..|
T Consensus 61 ~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G 128 (158)
T 3eyt_A 61 DKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAG 128 (158)
T ss_dssp TTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTS
T ss_pred CCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCC
Confidence 34666666654210 01234566777888887532 22222 688899976554566666543
No 128
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=54.95 E-value=4 Score=24.82 Aligned_cols=38 Identities=5% Similarity=0.065 Sum_probs=25.9
Q ss_pred HHHHHHhCCc--eEEEEeCCCCchhHHhhHHHHHhcCCCCEEE
Q psy6265 5 VQGPLQRKTI--MLCIFAGDVTPIEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 5 v~kai~~gka--~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~ 45 (91)
+.++|++-+. .|.|++.|-.+ ...|+.+|++.|-.+..
T Consensus 44 tkkaL~~l~~Ge~L~Vl~dd~~a---~~dIp~~~~~~G~~v~~ 83 (97)
T 1je3_A 44 TLEAMPQLKKGEILEVVSDCPQS---INNIPLDARNHGYTVLD 83 (97)
T ss_dssp HHHHTTTCCSSCEEEEEEBCSSS---SCHHHHHHHHHTCSEEE
T ss_pred HHHHHHcCCCCCEEEEEECCcch---HHHHHHHHHHCCCEEEE
Confidence 4455555332 38889998544 35689999999877754
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=54.80 E-value=15 Score=27.49 Aligned_cols=78 Identities=12% Similarity=0.175 Sum_probs=45.0
Q ss_pred HHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhH--------hCCCCceEE--EEEecCchHH
Q psy6265 5 VQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEA--------LGRKKPCIC--VIVKSTESVA 74 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a--------~G~~~~~~v--~~i~~~~~~~ 74 (91)
+...++.-.+-++++ |++.......+....++.++|++.+.+|.+|-.. +-......+ +--..+....
T Consensus 107 ~~~~l~~aD~vllVv--D~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~ 184 (423)
T 3qq5_A 107 ARRVFYRADCGILVT--DSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFD 184 (423)
T ss_dssp HHHHHTSCSEEEEEC--SSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTT
T ss_pred HHHHHhcCCEEEEEE--eCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHH
Confidence 444455444444444 5554445566778888889999999999876432 211111111 1112344567
Q ss_pred HHHHHHHHHh
Q psy6265 75 ELYEEVKQEI 84 (91)
Q Consensus 75 ~~~~~~~~~~ 84 (91)
+.++.|.+.+
T Consensus 185 eL~~~L~~~l 194 (423)
T 3qq5_A 185 DIGKTISEIL 194 (423)
T ss_dssp THHHHHHHHS
T ss_pred HHHHHHHHhh
Confidence 7888888877
No 130
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=54.50 E-value=37 Score=21.21 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=40.6
Q ss_pred HHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCH--hHHhhHhCCCCceEEEEEecCchHHHHHHHHHHHhh
Q psy6265 8 PLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSK--KDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIG 85 (91)
Q Consensus 8 ai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk--~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 85 (91)
....|+.+.|+=+.|- .++ ..+...+++.++|+..+-+. -|+ .-...++++ + ++...+.+|++...++
T Consensus 50 W~~~g~~Kvvlk~~~e--~el-~~l~~~a~~~gl~~~~i~DAG~Tei----~~gt~Tvla-i--gP~~~~~vd~itg~Lk 119 (121)
T 1wn2_A 50 WFREGQKKVVVKVESE--EEL-FKLKAEAEKLGLPNALIRDAGLTEI----PPGTVTVLA-V--GPAPEEIVDKVTGNLK 119 (121)
T ss_dssp HHHTTCCEEEEEESSH--HHH-HHHHHHHHHTTCCEEEEECTTCTTS----CTTCEEEEE-E--EEEEHHHHHHHHTTSE
T ss_pred HHHCCCcEEEEecCCH--HHH-HHHHHHHHHCCCCEEEEEcCCcccc----CCCCEEEEE-e--ccCCHHHHHHhcCCCC
Confidence 3467888888888874 244 45788889999998655433 221 111233344 3 3444567777765543
No 131
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=54.44 E-value=22 Score=20.12 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=22.6
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
.+....++.+...++|+--+....+-...+..+.+..++|++.+
T Consensus 36 ~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~ 79 (122)
T 1zgz_A 36 AGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILV 79 (122)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEE
Confidence 34556666777777777655432121222233333456777654
No 132
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=54.31 E-value=25 Score=23.80 Aligned_cols=41 Identities=7% Similarity=0.162 Sum_probs=27.4
Q ss_pred hHHHHHHHhC--CceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRK--TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~g--ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
..+++++.++ ...++.+-+|-.. ..+..+|+++|||+..+.
T Consensus 18 ~~~l~~l~~~~l~~~I~~Vit~~~~----~~v~~~A~~~gIp~~~~~ 60 (212)
T 3av3_A 18 QAIVDAAKRGDLPARVALLVCDRPG----AKVIERAARENVPAFVFS 60 (212)
T ss_dssp HHHHHHHHTTCCCEEEEEEEESSTT----CHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHhCCCCCeEEEEEeCCCC----cHHHHHHHHcCCCEEEeC
Confidence 4567888887 4566655555211 245678999999998654
No 133
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=54.30 E-value=31 Score=20.25 Aligned_cols=75 Identities=7% Similarity=0.036 Sum_probs=39.4
Q ss_pred hHHHHHHHh-CCceEEEEeCCCC----chhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHH
Q psy6265 3 STVQGPLQR-KTIMLCIFAGDVT----PIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELY 77 (91)
Q Consensus 3 kev~kai~~-gka~lViiA~D~s----p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~ 77 (91)
.+....+++ ....+||+--+.. ..++...+. +..++|++.+.+..+-.....--...+..++..+-+.++..
T Consensus 39 ~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~---~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~ 115 (140)
T 3h5i_A 39 EAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQ---QISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLI 115 (140)
T ss_dssp HHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHH---HHCCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHH---hCCCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHH
Confidence 456777777 5788999876542 223444443 34789988765443211111111123556666665544433
Q ss_pred HHH
Q psy6265 78 EEV 80 (91)
Q Consensus 78 ~~~ 80 (91)
..|
T Consensus 116 ~~i 118 (140)
T 3h5i_A 116 TIV 118 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 134
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=54.21 E-value=29 Score=20.03 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=30.9
Q ss_pred hHHHHHHHhCCceEEEEeCCCC----chhHHhhHHHHHhcCCCCEEEeC---CHhHHhhHhC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVT----PIEIMCHLPAVCEDKDIPYCYVP---SKKDIGEALG 57 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~s----p~~~~~~l~~lc~~~~IP~~~~~---sk~eLG~a~G 57 (91)
.+..+.++++...+||+--+.. ..++...+.. ..++|++.+. +....-++..
T Consensus 44 ~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~---~~~~~ii~ls~~~~~~~~~~~~~ 102 (140)
T 3cg0_A 44 EEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAA---GCNLPIIFITSSQDVETFQRAKR 102 (140)
T ss_dssp HHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHH---HSCCCEEEEECCCCHHHHHHHHT
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHh---CCCCCEEEEecCCCHHHHHHHHh
Confidence 4566777788889999875542 2233343433 3789987654 3334444543
No 135
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=54.06 E-value=20 Score=21.10 Aligned_cols=73 Identities=12% Similarity=0.044 Sum_probs=36.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC---CHhHHhhHhCCCCceEEEEEecCchHHHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP---SKKDIGEALGRKKPCICVIVKSTESVAELYE 78 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~---sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~ 78 (91)
.+....++++...+||+--+....+-...+..+.+..++|++.+. +....-+++.. .+...+..+-+.++...
T Consensus 38 ~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~---ga~~~l~KP~~~~~L~~ 113 (136)
T 2qzj_A 38 EEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYINEDQSILNALNS---GGDDYLIKPLNLEILYA 113 (136)
T ss_dssp HHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCCHHHHHHHHHT---TCCEEEESSCCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCCCHHHHHHHHHc---CCcEEEECCCCHHHHHH
Confidence 456667777778888875443221112223333333478887653 33344444432 23345555544443333
No 136
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=53.98 E-value=37 Score=22.36 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=31.5
Q ss_pred hHHHHHHHhC--CceEEEEeCCCCch---hHHhhHHHHHhcCCCCEEEeCCHhH
Q psy6265 3 STVQGPLQRK--TIMLCIFAGDVTPI---EIMCHLPAVCEDKDIPYCYVPSKKD 51 (91)
Q Consensus 3 kev~kai~~g--ka~lViiA~D~sp~---~~~~~l~~lc~~~~IP~~~~~sk~e 51 (91)
..+++.+++. ++.+||+++|.... .-...+....+..++|+..+....|
T Consensus 29 ~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~p~~~v~GNHD 82 (274)
T 3d03_A 29 ADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHD 82 (274)
T ss_dssp HHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTCSSCEEEECCTTS
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 3455666653 68999999997521 1223455566667899988775443
No 137
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=53.94 E-value=27 Score=21.19 Aligned_cols=52 Identities=6% Similarity=0.203 Sum_probs=39.0
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC--CHhHHhh
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP--SKKDIGE 54 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~--sk~eLG~ 54 (91)
+++.+|+++.+-..||++.+-+|.++ +..+..-+++.++.|-... +-+||-+
T Consensus 40 irdiiksmkdngkplvvfvngasqnd-vnefqneakkegvsydvlkstdpeeltq 93 (112)
T 2lnd_A 40 IRDIIKSMKDNGKPLVVFVNGASQND-VNEFQNEAKKEGVSYDVLKSTDPEELTQ 93 (112)
T ss_dssp HHHHHHHHTTCCSCEEEEECSCCHHH-HHHHHHHHHHHTCEEEEEECCCHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEecCccccc-HHHHHHHHHhcCcchhhhccCCHHHHHH
Confidence 46788999888888999999999866 4668888888888875443 3445544
No 138
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=53.85 E-value=28 Score=21.54 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=39.0
Q ss_pred HHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCC----ceEEEEEecCchHHHHHHHHHHH
Q psy6265 8 PLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKK----PCICVIVKSTESVAELYEEVKQE 83 (91)
Q Consensus 8 ai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~----~~~v~~i~~~~~~~~~~~~~~~~ 83 (91)
....|+.+.|+-+.|- .++ ..+...+++.++|+..+-+. |+.. ..+|..+ ++...+.+|++...
T Consensus 46 W~~~g~~KVvlk~~~e--~~l-~~l~~~a~~~gl~~~~i~DA-------G~Tqi~~gt~Tvlai--gP~~~~~vd~itg~ 113 (117)
T 1q7s_A 46 WEYCGQPKVVVKAPDE--ETL-IALLAHAKMLGLTVSLIQDA-------GRTQIAPGSQTVLGI--GPGPADLIDKVTGH 113 (117)
T ss_dssp HHHTTCCEEEEEESSH--HHH-HHHHHHHHHTTCCEEEEEEC-------SSSSEEEEEEEEEEE--EEEEHHHHHHHHTT
T ss_pred HHhCCCeeEEEEcCCH--HHH-HHHHHHHHHCCCCEEEEEEC-------CCcccCCCCeEEEEe--ccCCHHHHHHhcCC
Confidence 3457887878888874 244 45888889999997544332 4321 1223333 33335567777655
Q ss_pred hh
Q psy6265 84 IG 85 (91)
Q Consensus 84 ~~ 85 (91)
++
T Consensus 114 lk 115 (117)
T 1q7s_A 114 LK 115 (117)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 139
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=53.43 E-value=24 Score=24.44 Aligned_cols=41 Identities=10% Similarity=0.051 Sum_probs=25.5
Q ss_pred HHHHHHh-CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 5 VQGPLQR-KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 5 v~kai~~-gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
+...+.+ +++.-+|+..+... ...+...+.+.+||++.+.+
T Consensus 53 i~~~i~~~~~vDgiIi~~~~~~---~~~~~~~~~~~giPvV~~~~ 94 (350)
T 3h75_A 53 ARELFQGRDKPDYLMLVNEQYV---APQILRLSQGSGIKLFIVNS 94 (350)
T ss_dssp HHHHHHSSSCCSEEEEECCSSH---HHHHHHHHTTSCCEEEEEES
T ss_pred HHHHHhcCCCCCEEEEeCchhh---HHHHHHHHHhCCCcEEEEcC
Confidence 3344454 56776777665322 23456678899999987653
No 140
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=52.81 E-value=17 Score=28.87 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=46.6
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVK 81 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~ 81 (91)
.-||.++|+-=..-++++-.--....-...+...|.++++|.+.+-+|-+. .+-++....+++.
T Consensus 99 ~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr----------------~~a~~~~~~~ei~ 162 (709)
T 4fn5_A 99 TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDR----------------QGANFLRVVEQIK 162 (709)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSS----------------TTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccc----------------cCccHHHHHHHhh
Confidence 458889998888767776544333334567999999999999887777652 2334555566666
Q ss_pred HHhhc
Q psy6265 82 QEIGA 86 (91)
Q Consensus 82 ~~~~~ 86 (91)
+.+..
T Consensus 163 ~~l~~ 167 (709)
T 4fn5_A 163 KRLGH 167 (709)
T ss_dssp HHHCS
T ss_pred hhccc
Confidence 55543
No 141
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=52.81 E-value=20 Score=20.09 Aligned_cols=45 Identities=7% Similarity=0.071 Sum_probs=23.9
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+....++++...++|+--+....+-...+..+-+..++|++.+.
T Consensus 35 ~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 35 REALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred HHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 355666677777888876444221111222222234678877653
No 142
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=52.41 E-value=16 Score=27.46 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=34.1
Q ss_pred ceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhC----CCCceEEEEEecCch
Q psy6265 14 IMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALG----RKKPCICVIVKSTES 72 (91)
Q Consensus 14 a~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G----~~~~~~v~~i~~~~~ 72 (91)
+.+||.|.|.. .+-..+...|++++||+..+.+. +|+...- ......+++. .+|.
T Consensus 73 ~~lVi~at~~~--~~n~~i~~~a~~~~i~vn~~d~~-e~~~~~~pa~~~~~~l~iaIs-T~Gk 131 (457)
T 1pjq_A 73 CWLAIAATDDD--TVNQRVSDAAESRRIFCNVVDAP-KAASFIMPSIIDRSPLMVAVS-SGGT 131 (457)
T ss_dssp CSEEEECCSCH--HHHHHHHHHHHHTTCEEEETTCT-TSSSEECCEEEEETTEEEEEE-CTTS
T ss_pred ccEEEEcCCCH--HHHHHHHHHHHHcCCEEEECCCc-ccCceEeeeEEEeCCeEEEEE-CCCC
Confidence 67888888863 34467889999999997655554 4443221 1224456666 5543
No 143
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=52.36 E-value=40 Score=21.04 Aligned_cols=57 Identities=9% Similarity=0.149 Sum_probs=32.9
Q ss_pred ceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEE-eCCHhHHhhHhCCCCceEEEEEecC
Q psy6265 14 IMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCY-VPSKKDIGEALGRKKPCICVIVKST 70 (91)
Q Consensus 14 a~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~~~~v~~i~~~ 70 (91)
+.++.|..|-.. .+-...+..+++++++++-. .....++.+..|....=+..+++..
T Consensus 66 ~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~ 126 (188)
T 2cvb_A 66 VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDER 126 (188)
T ss_dssp EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCEESEEEEECTT
T ss_pred eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCCCeEEEECCC
Confidence 666666665310 01234466677777777633 3456689999997643334555443
No 144
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=52.23 E-value=38 Score=20.97 Aligned_cols=68 Identities=9% Similarity=0.080 Sum_probs=39.5
Q ss_pred HHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCH--hHHhhHhCCCCceEEEEEecCchHHHHHHHHHHHhh
Q psy6265 8 PLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSK--KDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIG 85 (91)
Q Consensus 8 ai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk--~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 85 (91)
....|+.+.|+=+.|-+ ++ ..+...+++.++|+..+-+. -|+ --...++++ + ++...+.+|++...++
T Consensus 46 W~~~g~~kiVlk~~~e~--~l-~~l~~~a~~~gl~~~~v~DAG~Tei----~~gt~Tvla-i--gP~~~~~vd~itg~lk 115 (117)
T 1rlk_A 46 WYDEGQRKIVVKVNDLD--EI-MEIKRMADSMGIVNEIVQDRGYTQV----EPGTITCIG-L--GPDEEEKLDKITGKYK 115 (117)
T ss_dssp HHHTTCCEEEEEESSHH--HH-HHHHHHHHHHTCCEEEEECCCSSSS----SCCCEEEEE-E--EEEEHHHHHHHHTTSC
T ss_pred HHHCCCeEEEEecCCHH--HH-HHHHHHHHHCCCCEEEEEeCCccCc----CCCCEEEEE-e--CcCCHHHHHHHcCCCC
Confidence 34578888888888742 44 45778888999997655433 111 001223343 4 3333556777765543
No 145
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=52.07 E-value=42 Score=22.15 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=23.0
Q ss_pred HHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 5 VQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
.++.+..+++.-+|+.....+ . ....+.+.+||++.+.+
T Consensus 55 ~~~~l~~~~vdgiIi~~~~~~-~----~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 55 LLRAIGSRGFDGLILQSFSNP-Q----TVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHTTTCSEEEEESSCCH-H----HHHHHHTTSSCEEEESC
T ss_pred HHHHHHhCCCCEEEEecCCcH-H----HHHHHHHCCCCEEEEec
Confidence 445555666555555543322 2 33455678999987764
No 146
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=52.04 E-value=21 Score=20.99 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=27.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHh---cCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCE---DKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~---~~~IP~~~~~ 47 (91)
.+..+.+++....+||+--+....+-...+..+.+ ..++|++.+.
T Consensus 42 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls 89 (147)
T 2zay_A 42 IEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALS 89 (147)
T ss_dssp HHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred HHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEe
Confidence 45677777888889998766543222222333333 4578887654
No 147
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=51.67 E-value=32 Score=19.71 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=41.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeCCHh--HHhhHhCCCCceEEEEEecCchHHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVPSKK--DIGEALGRKKPCICVIVKSTESVAELY 77 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~sk~--eLG~a~G~~~~~~v~~i~~~~~~~~~~ 77 (91)
.+....+++....+||+--+... .++...+.......++|++.+.+.. +..++.. ..+..++..+-+.++..
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~---~g~~~~l~KP~~~~~l~ 113 (133)
T 3nhm_A 37 ASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQ---PVPDAYLVKPVKPPVLI 113 (133)
T ss_dssp HHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTS---CCCSEEEESSCCHHHHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhh---cCCceEEeccCCHHHHH
Confidence 46777888899999999765533 2333333322223479987765432 3222222 22344555555544444
Q ss_pred HHHHHHh
Q psy6265 78 EEVKQEI 84 (91)
Q Consensus 78 ~~~~~~~ 84 (91)
..+...+
T Consensus 114 ~~i~~~l 120 (133)
T 3nhm_A 114 AQLHALL 120 (133)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 148
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=51.56 E-value=42 Score=21.00 Aligned_cols=64 Identities=11% Similarity=0.136 Sum_probs=35.1
Q ss_pred HHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEE-eCCHhHHhhHhCCCCceEEEEEec
Q psy6265 6 QGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCY-VPSKKDIGEALGRKKPCICVIVKS 69 (91)
Q Consensus 6 ~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~~~~v~~i~~ 69 (91)
.+......+.++.|..|-.. .+-...+..+.+++++++-. .....++.+..|....=+..+++.
T Consensus 72 ~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~ 139 (196)
T 2ywi_A 72 ANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDAACTPDFYIFDR 139 (196)
T ss_dssp HHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTCCEESEEEEEET
T ss_pred HHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhCCCCCCeEEEEcC
Confidence 33444444777777765310 01123455666777776533 344568888888764333455543
No 149
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=51.25 E-value=25 Score=24.55 Aligned_cols=42 Identities=10% Similarity=0.270 Sum_probs=27.9
Q ss_pred HHHHHHHhCCceEEEEeCCCCc------hhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTP------IEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp------~~~~~~l~~lc~~~~IP~~~ 45 (91)
+..+++++.+.++|++.+=-+| .+-...+.++|++++++++.
T Consensus 153 ~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 200 (390)
T 1d2f_A 153 KLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVIS 200 (390)
T ss_dssp HHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 4556666557888888532222 12356789999999998763
No 150
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=51.18 E-value=21 Score=25.87 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=29.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCCch------h---HHhhHHHHHhcCCCCEEEeCCHhH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPI------E---IMCHLPAVCEDKDIPYCYVPSKKD 51 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~------~---~~~~l~~lc~~~~IP~~~~~sk~e 51 (91)
.++.+.++..++-+|++|+|.... . +...+..+ ...++|++.+....+
T Consensus 50 ~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L-~~~~~pv~~v~GNHD 106 (386)
T 3av0_A 50 KLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKL-HENNIKVYIVAGNHE 106 (386)
T ss_dssp HHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHH-HHTTCEEEECCCGGG
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH-HhcCCcEEEEcCCCC
Confidence 355666677889999999997321 1 11222222 234899988776655
No 151
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=51.13 E-value=41 Score=20.81 Aligned_cols=71 Identities=8% Similarity=0.037 Sum_probs=42.8
Q ss_pred CCceEEEEeCCCCchhH----HhhHHHHHhcCCCCEEEeC----CHhHHhhHhCCCCceEEEEEecCchHHHHHHHHHHH
Q psy6265 12 KTIMLCIFAGDVTPIEI----MCHLPAVCEDKDIPYCYVP----SKKDIGEALGRKKPCICVIVKSTESVAELYEEVKQE 83 (91)
Q Consensus 12 gka~lViiA~D~sp~~~----~~~l~~lc~~~~IP~~~~~----sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~~~ 83 (91)
+..+.||+-+|..+..- .......++..+|++..++ +..+|-+..+.. ....-...+..+..+.|+.|.+.
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~~~~~~L~~ia~~~-~~~~~~~~~~~~L~~~~~~i~~~ 180 (182)
T 1shu_X 102 KTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSK-EQVFPVKGGFQALKGIINSILAQ 180 (182)
T ss_dssp GSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHSSSG-GGEEESSSTTHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCcCCHHHHHHHhCCC-CceEEccCCHHHHHHHHHHHHhc
Confidence 45678888888764221 1234556788899876543 566787777664 22222222455667777777654
No 152
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=51.03 E-value=18 Score=23.70 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=28.2
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSK 49 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk 49 (91)
.++++.++..++.+||+++|....+....+ ++.++|+..+...
T Consensus 42 ~~~l~~~~~~~~D~ii~~GDl~~~~~~~~l----~~l~~~~~~V~GN 84 (190)
T 1s3l_A 42 RKAIEIFNDENVETVIHCGDFVSLFVIKEF----ENLNANIIATYGN 84 (190)
T ss_dssp HHHHHHHHHSCCSEEEECSCCCSTHHHHHG----GGCSSEEEEECCT
T ss_pred HHHHHHHhhcCCCEEEECCCCCCHHHHHHH----HhcCCCEEEEeCC
Confidence 455666777889999999997532333322 3446788877644
No 153
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=51.00 E-value=27 Score=24.37 Aligned_cols=42 Identities=7% Similarity=0.114 Sum_probs=33.3
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
+.++.+.+++.+++.||.-...++ .+.+ .++++.++++....
T Consensus 212 l~~l~~~ik~~~v~~if~e~~~~~-~~~~---~ia~~~g~~v~~ld 253 (284)
T 2prs_A 212 LHEIRTQLVEQKATCVFAEPQFRP-AVVE---SVARGTSVRMGTLD 253 (284)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCS-HHHH---HHTTTSCCEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCh-HHHH---HHHHHcCCeEEEec
Confidence 357788899999999999999888 4433 45889999987653
No 154
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=50.93 E-value=45 Score=21.20 Aligned_cols=77 Identities=9% Similarity=0.003 Sum_probs=41.2
Q ss_pred ceEEEEeCCCCc--hhHHhhHHHHHhcCCCCEEEeCCHhHHhh-------------HhCC------CCceEEEEE--ecC
Q psy6265 14 IMLCIFAGDVTP--IEIMCHLPAVCEDKDIPYCYVPSKKDIGE-------------ALGR------KKPCICVIV--KST 70 (91)
Q Consensus 14 a~lViiA~D~sp--~~~~~~l~~lc~~~~IP~~~~~sk~eLG~-------------a~G~------~~~~~v~~i--~~~ 70 (91)
+.++++--|++. ......+..+....++|++.+.+|.+|-. .+.. ....-+..+ ..+
T Consensus 116 ~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g 195 (223)
T 4dhe_A 116 LCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKR 195 (223)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTT
T ss_pred cCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCC
Confidence 444555555432 12334466677778999999988876622 1111 112222222 345
Q ss_pred chHHHHHHHHHHHhhcCCCC
Q psy6265 71 ESVAELYEEVKQEIGALPVT 90 (91)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~ 90 (91)
....+.++.|.+.+..-..+
T Consensus 196 ~gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 196 TGLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp BSHHHHHHHHHHHHC-----
T ss_pred cCHHHHHHHHHHhcCccCCc
Confidence 56788888888887655443
No 155
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=50.89 E-value=25 Score=27.38 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=30.9
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKD 51 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~e 51 (91)
++.++.|.+-.+.+||++.++++. ..+ ++.+++|-.+...++.+
T Consensus 285 ~~~v~~I~~~g~~vvi~~~~I~~~--al~---~L~~~gI~av~~v~~~~ 328 (568)
T 3p9d_H 285 DAMMKEIADMGVECIVAGAGVGEL--ALH---YLNRYGILVLKVPSKFE 328 (568)
T ss_dssp HHHHHHHHHTTCCEEEECSCCCHH--HHH---HHHHHTCEEECCCCHHH
T ss_pred HHHHHHHHhcCCeEEEECCCcChH--HHH---HHHHCCeEEEecCCHHH
Confidence 456777878889999999999883 223 33566887776655543
No 156
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=50.88 E-value=37 Score=20.44 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=23.4
Q ss_pred HHHHHHHhCCceEEEE--eCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 4 TVQGPLQRKTIMLCIF--AGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 4 ev~kai~~gka~lVii--A~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
+..+.+++|+- .+++ +.|-.-......+...|++.+|++..++
T Consensus 71 ~i~~~~~~G~~-V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viP 115 (117)
T 3hh1_A 71 QVIELLEEGSD-VALVTDAGTPAISDPGYTMASAAHAAGLPVVPVP 115 (117)
T ss_dssp HHHHHHHTTCC-EEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHCCCe-EEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeC
Confidence 44556666653 3333 3443222223445666777888887654
No 157
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=50.88 E-value=32 Score=21.19 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=31.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc-------hhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP-------IEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp-------~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.++.+++..++++++..-..| ..+-..+..+|+++++|++....
T Consensus 93 ~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~~ 145 (185)
T 3hp4_A 93 TALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFFM 145 (185)
T ss_dssp HHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCTT
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcchh
Confidence 45677777777888887632221 13456678899999999987653
No 158
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=50.84 E-value=13 Score=24.26 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=47.3
Q ss_pred CCceEEEEeCCCCchhH--HhhHHHHHhcCCCCEEEeC--C------------HhHHhhHhCCCCceEEEEEecCchHHH
Q psy6265 12 KTIMLCIFAGDVTPIEI--MCHLPAVCEDKDIPYCYVP--S------------KKDIGEALGRKKPCICVIVKSTESVAE 75 (91)
Q Consensus 12 gka~lViiA~D~sp~~~--~~~l~~lc~~~~IP~~~~~--s------------k~eLG~a~G~~~~~~v~~i~~~~~~~~ 75 (91)
+..+.||+-.|..+..- .......+++.+|++..++ + ..+|-...+......+-.+.+..+..+
T Consensus 108 ~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~l~~ 187 (213)
T 1pt6_A 108 GVKKVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVT 187 (213)
T ss_dssp TCEEEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGG
T ss_pred CCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHHHhCCCchhcEEEeCCHHHHHH
Confidence 45778888888765321 2334556678899876544 3 256766666533333444566677777
Q ss_pred HHHHHHHHhhcC
Q psy6265 76 LYEEVKQEIGAL 87 (91)
Q Consensus 76 ~~~~~~~~~~~~ 87 (91)
.|+.|.+.|-.+
T Consensus 188 i~~~l~~~i~~~ 199 (213)
T 1pt6_A 188 IVKTLGERIFAL 199 (213)
T ss_dssp GHHHHHHHHTC-
T ss_pred HHHHHHHhheec
Confidence 888887776543
No 159
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=50.80 E-value=38 Score=20.69 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=30.1
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCC-CEEEeCC--HhHHhhHhCCCC
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDI-PYCYVPS--KKDIGEALGRKK 60 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~I-P~~~~~s--k~eLG~a~G~~~ 60 (91)
..+.+|.|..|. +. .+..+++++++ ++-...+ ..++.+..|...
T Consensus 75 ~~~~vv~is~d~-~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~ 121 (167)
T 2jsy_A 75 GDVNVYTISADL-PF----AQARWCGANGIDKVETLSDHRDMSFGEAFGVYI 121 (167)
T ss_dssp SSCEEEEEECSS-GG----GTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBB
T ss_pred CCCEEEEEECCC-HH----HHHHHHHhcCCCCceEeeCCchhHHHHHhCCcc
Confidence 568899998883 42 24456778888 6654443 468889998764
No 160
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=50.71 E-value=26 Score=24.86 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=28.2
Q ss_pred HHHHHHHhCCceEEEEeCCCCc------hhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTP------IEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp------~~~~~~l~~lc~~~~IP~~~ 45 (91)
+..+++++.+.++|++..=-+| .+-...+.++|+++++.++.
T Consensus 173 ~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 220 (437)
T 3g0t_A 173 KLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220 (437)
T ss_dssp HHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEE
Confidence 4556665677888888432222 12356688999999998764
No 161
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=50.32 E-value=38 Score=20.13 Aligned_cols=48 Identities=15% Similarity=0.094 Sum_probs=28.1
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHh-cCCCCEEEeCCHh
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCE-DKDIPYCYVPSKK 50 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~-~~~IP~~~~~sk~ 50 (91)
.+....+++....+||+--+....+-...+..+.+ ..++|++.+.+..
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (154)
T 2rjn_A 41 LDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYA 89 (154)
T ss_dssp HHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGG
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCC
Confidence 46677788888889998766532222222223323 3478887765443
No 162
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=50.24 E-value=9.2 Score=24.49 Aligned_cols=73 Identities=5% Similarity=0.109 Sum_probs=46.5
Q ss_pred CceEEEEeCCCCch-hH--HhhHHHHHhcCCCCEEEeC--C-------HhHHhhHhCCCCceEEEEEecCchHHHHHHHH
Q psy6265 13 TIMLCIFAGDVTPI-EI--MCHLPAVCEDKDIPYCYVP--S-------KKDIGEALGRKKPCICVIVKSTESVAELYEEV 80 (91)
Q Consensus 13 ka~lViiA~D~sp~-~~--~~~l~~lc~~~~IP~~~~~--s-------k~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~ 80 (91)
..+.+|+-.|..+. +- .......+++.+|++..++ + ..+|-+..+.....-+-.+.+..+..+.|+.|
T Consensus 106 ~~~~iillTDG~~~~d~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~l~~~~~~i 185 (194)
T 1mf7_A 106 AFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQL 185 (194)
T ss_dssp SEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHH
T ss_pred CCeEEEEEcCCCCCCCchhhHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhCCCCcccEEEeCCHHHHHHHHHHH
Confidence 35788888887543 11 1234456688999876543 2 57888887764323445566677777788888
Q ss_pred HHHhh
Q psy6265 81 KQEIG 85 (91)
Q Consensus 81 ~~~~~ 85 (91)
.+.+-
T Consensus 186 ~~~ic 190 (194)
T 1mf7_A 186 REKIF 190 (194)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77653
No 163
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=50.22 E-value=34 Score=24.43 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=14.8
Q ss_pred CCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 23 VTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 23 ~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+|.+ ...+..++++++|+++++.
T Consensus 230 ps~~~-l~~l~~~ik~~~v~~If~e 253 (313)
T 1toa_A 230 ASAHD-MQELAAFIAQRKLPAIFIE 253 (313)
T ss_dssp CCHHH-HHHHHHHHHHTTCSEEEEE
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEEe
Confidence 34533 3456777777777777654
No 164
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=50.15 E-value=35 Score=19.69 Aligned_cols=76 Identities=9% Similarity=0.084 Sum_probs=40.4
Q ss_pred hHHHHHHHhCCceEEEEeCCCC--------chhHHhhHHHHHhcCCCCEEEeCCHh---HHhhHhCCCCceEEEEEecCc
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVT--------PIEIMCHLPAVCEDKDIPYCYVPSKK---DIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~s--------p~~~~~~l~~lc~~~~IP~~~~~sk~---eLG~a~G~~~~~~v~~i~~~~ 71 (91)
.+..+.+++....+||+--+.. ..++...+.. ...++|++.+.+.. ..-++... .+..++..+-
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~--~~~~~~ii~ls~~~~~~~~~~~~~~---g~~~~l~kp~ 111 (140)
T 2qr3_A 37 VSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKR--QYRDLPVVLFTAYADIDLAVRGIKE---GASDFVVKPW 111 (140)
T ss_dssp HHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHH--HCTTCCEEEEEEGGGHHHHHHHHHT---TCCEEEEESC
T ss_pred HHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHh--hCcCCCEEEEECCCCHHHHHHHHHc---CchheeeCCC
Confidence 4677888888899999976543 2233333332 13579988765433 33344322 2234444454
Q ss_pred hHHHHHHHHHHH
Q psy6265 72 SVAELYEEVKQE 83 (91)
Q Consensus 72 ~~~~~~~~~~~~ 83 (91)
+.++....+...
T Consensus 112 ~~~~l~~~l~~~ 123 (140)
T 2qr3_A 112 DNQKLLETLLNA 123 (140)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444433
No 165
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=49.87 E-value=22 Score=21.96 Aligned_cols=68 Identities=6% Similarity=0.099 Sum_probs=37.9
Q ss_pred HHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC--CHhHHhhHhCCCCceEEEEEecCchHHHHHHHHHHHhh
Q psy6265 8 PLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP--SKKDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIG 85 (91)
Q Consensus 8 ai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~--sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 85 (91)
....|+.+.|+=++|- .++ ..+...+++.++|+..+- ..-|+. -...++++ + ++...+.+|++...++
T Consensus 44 W~~~g~~kivlk~~~e--~~l-~~l~~~a~~~gl~~~~i~DAG~Tei~----~gt~Tvla-i--gP~~~~~vd~itg~lk 113 (115)
T 2zv3_A 44 WLREGQKKVVVKVNSE--KEL-IDIYNKARSEGLPCSIIRDAGHTQLE----PGTLTAVA-I--GPEKDEKIDKITGHLK 113 (115)
T ss_dssp HHHTTCCEEEEEESSH--HHH-HHHHHHHHHHTCCEEEEEECC-----------EEEEEE-E--EEECHHHHHHHHTTSC
T ss_pred HHHCCCeEEEEecCCH--HHH-HHHHHHHHHcCCCEEEEEeCCceecC----CCCEEEEE-e--CcCCHHHHHHHhCCCC
Confidence 3457888888888873 244 457788889999975443 222321 02233344 3 3333556777765543
No 166
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=49.80 E-value=40 Score=25.67 Aligned_cols=55 Identities=7% Similarity=0.137 Sum_probs=40.3
Q ss_pred HHHHHhcCCCCEEEeCCHhHHhhHhC----CCCceEEEEEecCchHHHHHHHHHHHhhc
Q psy6265 32 LPAVCEDKDIPYCYVPSKKDIGEALG----RKKPCICVIVKSTESVAELYEEVKQEIGA 86 (91)
Q Consensus 32 l~~lc~~~~IP~~~~~sk~eLG~a~G----~~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 86 (91)
+..+|+.+|+++..+.+.++|-.++- .+.++.+=+..+..+....+..+.+.++.
T Consensus 497 ~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~~~~~~~l~~~~~~~~~ 555 (556)
T 3hww_A 497 FEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLAQVSH 555 (556)
T ss_dssp SHHHHHHTTCEEECCSSHHHHHHHHHHHTTSSSEEEEEEECCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcEEecCCHHHHHHHHHHHHhCCCCEEEEEECCccccHHHHHHHHHHhhc
Confidence 56789999999999999998877664 34455555666666666677777766654
No 167
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=49.26 E-value=39 Score=20.42 Aligned_cols=38 Identities=8% Similarity=0.185 Sum_probs=24.3
Q ss_pred HHHhcCCCCEEEe-CCHhHHhhHhCCCCceEEEEEecCc
Q psy6265 34 AVCEDKDIPYCYV-PSKKDIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 34 ~lc~~~~IP~~~~-~sk~eLG~a~G~~~~~~v~~i~~~~ 71 (91)
.+.+++++++... ....++.+..|....-++.+++..|
T Consensus 88 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G 126 (158)
T 3hdc_A 88 EKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIVDRKG 126 (158)
T ss_dssp GGGGGCCCSCEEEECTTSHHHHHTTCCSSSEEEEECTTS
T ss_pred HHHHHcCCCceEEECchHHHHHHhCCCCcceEEEEcCCC
Confidence 3445667766443 3456899999987555566776544
No 168
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=48.82 E-value=28 Score=27.12 Aligned_cols=43 Identities=5% Similarity=-0.101 Sum_probs=28.6
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHh
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKK 50 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~ 50 (91)
...++.|.+-.+.+||++.|+++.. .+ ++..++|+.+.--.+.
T Consensus 282 ~~~le~I~~~g~~lvI~~~~I~~~a--l~---~L~~~~I~av~~~~k~ 324 (559)
T 3p9d_A 282 LERVKKIIDAGAQVVLTTKGIDDLC--LK---EFVEAKIMGVRRCKKE 324 (559)
T ss_dssp HHHHHHHHTTCCSEEEESSCCCGGG--TH---HHHHTTCEEESSCCHH
T ss_pred HHHHHHHHhhCCCEEEEcCCCCHHH--HH---HHHHcCCceEccCCHH
Confidence 4556777777799999999998842 22 3456677666544443
No 169
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=48.75 E-value=15 Score=25.34 Aligned_cols=45 Identities=22% Similarity=0.098 Sum_probs=31.6
Q ss_pred hCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhH
Q psy6265 11 RKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEA 55 (91)
Q Consensus 11 ~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a 55 (91)
.+.+.++++--|++..+-...+.....+.++|++.+.+|.+|-..
T Consensus 83 ~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 83 SGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEK 127 (274)
T ss_dssp HTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHH
T ss_pred hcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhh
Confidence 466777777777765444444555666779999999998887543
No 170
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=48.70 E-value=32 Score=19.59 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=23.5
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+....++++...+||+--+... .++...+.......++|++.+.
T Consensus 39 ~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s 86 (128)
T 1jbe_A 39 VDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVT 86 (128)
T ss_dssp HHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEe
Confidence 35566677777888887654432 2222323221123467877654
No 171
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=48.63 E-value=13 Score=22.04 Aligned_cols=21 Identities=19% Similarity=0.040 Sum_probs=17.3
Q ss_pred hHHhhHHHHHhcCCCCEEEeC
Q psy6265 27 EIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 27 ~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+..++...++++|||++.-.
T Consensus 27 ~~A~~I~~~A~e~~VPi~e~~ 47 (83)
T 3bzy_B 27 AKALQIIKLAELYDIPVIEDI 47 (83)
T ss_dssp HHHHHHHHHHHHTTCCEEECH
T ss_pred HHHHHHHHHHHHcCCCEEeCH
Confidence 467789999999999997543
No 172
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=48.61 E-value=26 Score=24.50 Aligned_cols=42 Identities=10% Similarity=0.130 Sum_probs=28.3
Q ss_pred HHHHHHHhCCceEEEEeCCCCc------hhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTP------IEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp------~~~~~~l~~lc~~~~IP~~~ 45 (91)
+..+++++.+.++|++.+=-+| .+....+.++|++++++++.
T Consensus 155 ~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (399)
T 1c7n_A 155 KLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWS 202 (399)
T ss_dssp HHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred HHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 4556666567888888542222 23467789999999998763
No 173
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=48.09 E-value=51 Score=20.95 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=37.0
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcC----CCCEEE-eCCHhHHhhHhCCC-----CceEEEEEecC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDK----DIPYCY-VPSKKDIGEALGRK-----KPCICVIVKST 70 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~----~IP~~~-~~sk~eLG~a~G~~-----~~~~v~~i~~~ 70 (91)
+..+.+....+.+|.|..|. + + .+..+++++ ++++-. .....++.+..|.. ..-+..+++..
T Consensus 70 ~l~~~~~~~~v~vv~Vs~d~-~-~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~ 141 (195)
T 2bmx_A 70 KLNDEFEDRDAQILGVSIDS-E-F---AHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPN 141 (195)
T ss_dssp HTHHHHHTTTEEEEEEESSC-H-H---HHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTT
T ss_pred HHHHHHHHCCCEEEEEECCC-H-H---HHHHHHHHhccccCCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCC
Confidence 44455555568888888874 3 2 233445555 555432 33457888999876 44445666643
No 174
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=47.95 E-value=44 Score=26.57 Aligned_cols=50 Identities=8% Similarity=-0.041 Sum_probs=31.5
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDI 52 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eL 52 (91)
.++..+++.-..-++++...-....-...+...+...++|++.+.+|.++
T Consensus 97 ~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 97 IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 46777777666555555433222112334667788899999988888765
No 175
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=47.91 E-value=38 Score=19.46 Aligned_cols=55 Identities=5% Similarity=-0.027 Sum_probs=32.0
Q ss_pred CceEEEEeCCCCchhHHhhHHHHHhcCCCCEEE-eCCHhHHhhHhCCCCceEEEEEecCc
Q psy6265 13 TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCY-VPSKKDIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 13 ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~~~~v~~i~~~~ 71 (91)
.+.++.+..|-++. .+..+.+++++++-. .....++.+..|....=++.+++.+|
T Consensus 55 ~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G 110 (136)
T 1lu4_A 55 AVTFVGIATRADVG----AMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADG 110 (136)
T ss_dssp TSEEEEEECSSCHH----HHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEEEEECTTS
T ss_pred CcEEEEEEcCCCHH----HHHHHHHHcCCCceEEECCchhHHHhcCCCCCCEEEEECCCC
Confidence 46666666665442 244455666666543 34467889988876544455554433
No 176
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=47.66 E-value=10 Score=27.21 Aligned_cols=25 Identities=8% Similarity=0.319 Sum_probs=17.2
Q ss_pred CCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 22 DVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 22 D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
+.+|.+ ...+..++++++|+++|+.
T Consensus 222 eps~~~-l~~l~~~ik~~~v~~If~e 246 (312)
T 2o1e_A 222 EPSAAS-LAKLKTYAKEHNVKVIYFE 246 (312)
T ss_dssp CCCHHH-HHHHHHHTTSSCCCEEECS
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEe
Confidence 345544 4557788888888888764
No 177
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=47.40 E-value=16 Score=25.69 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=28.4
Q ss_pred HHHHHHHhCCceEEEEeC--CCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 4 TVQGPLQRKTIMLCIFAG--DVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 4 ev~kai~~gka~lViiA~--D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
+..+++.+.+.++|++.+ +-.+.. ...|.++|+++|++++.-
T Consensus 163 ~l~~~i~~~~~~~v~~~~~~~~~~~~-l~~i~~l~~~~~~~li~D 206 (425)
T 3ecd_A 163 QVEALAQQHKPSLIIAGFSAYPRKLD-FARFRAIADSVGAKLMVD 206 (425)
T ss_dssp HHHHHHHHHCCSEEEEECSCCCSCCC-HHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHhhcCCcEEEEccccCCCcCC-HHHHHHHHHHcCCEEEEE
Confidence 455666655688888873 222323 467999999999987643
No 178
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=47.40 E-value=13 Score=22.27 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=32.1
Q ss_pred HhhHHHHHhcCCCCEEEeCCHhHHhhH---------hCCCCceEEEEEecCchHHHHHHHHHHHh
Q psy6265 29 MCHLPAVCEDKDIPYCYVPSKKDIGEA---------LGRKKPCICVIVKSTESVAELYEEVKQEI 84 (91)
Q Consensus 29 ~~~l~~lc~~~~IP~~~~~sk~eLG~a---------~G~~~~~~v~~i~~~~~~~~~~~~~~~~~ 84 (91)
...+..+.+..++|++.+.+|.+|-.. .|.. ...-.--..+....+.|+.+.+.+
T Consensus 97 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 97 DYEVAEYLRRKGKPVILVATKVDDPKHELYLGPLYGLGFG-DPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHTCCEEEEEECCCSGGGGGGCGGGGGGSSC-SCEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCEEEEEECcccccchHhHHHHHhCCCC-CeEEEecccCCChHHHHHHHHHhC
Confidence 345666777789999999998776432 1110 111111223455677777777654
No 179
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=47.20 E-value=56 Score=22.58 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=21.7
Q ss_pred HHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 8 PLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 8 ai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.|..-+--|||......+ .....| ++.+||++.+.
T Consensus 79 ~i~~l~PDlIi~~~~~~~-~~~~~L----~~~Gipvv~~~ 113 (326)
T 3psh_A 79 SLLALKPDVVFVTNYAPS-EMIKQI----SDVNIPVVAIS 113 (326)
T ss_dssp HHHHTCCSEEEEETTCCH-HHHHHH----HTTTCCEEEEC
T ss_pred HHHccCCCEEEEeCCCCh-HHHHHH----HHcCCCEEEEe
Confidence 445556678877655433 333333 57899998765
No 180
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=47.18 E-value=41 Score=19.59 Aligned_cols=58 Identities=10% Similarity=0.015 Sum_probs=33.8
Q ss_pred ceEEEEeCCCCch-hHHhhHHHHHhcCCCCEEE-eCCHhHHhhHhCCCCceEEEEEecCc
Q psy6265 14 IMLCIFAGDVTPI-EIMCHLPAVCEDKDIPYCY-VPSKKDIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 14 a~lViiA~D~sp~-~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~~~~v~~i~~~~ 71 (91)
+.++.+..|-.+. .-...+..+.+++++++-. .....++.+..|....=++.+++.+|
T Consensus 62 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G 121 (148)
T 2b5x_A 62 LNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTG 121 (148)
T ss_dssp SEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTCCCCSSEEEEECTTC
T ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhCCCCCCEEEEECCCC
Confidence 7777776654210 0123455566777776533 45567899999986554566665443
No 181
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=47.03 E-value=30 Score=19.57 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=22.2
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+....++++...+||+--+....+-...+..+.+..++|++.+.
T Consensus 37 ~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 37 AEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp HHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 345566667777777775443221111222222233567776543
No 182
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=46.83 E-value=14 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=15.1
Q ss_pred hhHHHHHhcCCCCEEEeCCHhHH
Q psy6265 30 CHLPAVCEDKDIPYCYVPSKKDI 52 (91)
Q Consensus 30 ~~l~~lc~~~~IP~~~~~sk~eL 52 (91)
..+...++..++|++.+.+|.+|
T Consensus 100 ~~~l~~~~~~~~~~ilV~NK~DL 122 (302)
T 2yv5_A 100 DNMLVVYEYFKVEPVIVFNKIDL 122 (302)
T ss_dssp HHHHHHHHHTTCEEEEEECCGGG
T ss_pred HHHHHHHHhCCCCEEEEEEcccC
Confidence 34444566677777777777766
No 183
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=46.65 E-value=17 Score=26.41 Aligned_cols=34 Identities=6% Similarity=0.184 Sum_probs=27.1
Q ss_pred CceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 13 TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 13 ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
+..+||.+.|- . +....+...|.+++||++...+
T Consensus 125 ~~dvVv~~~d~-~-~~r~~ln~~~~~~~ip~i~~~~ 158 (346)
T 1y8q_A 125 QFDAVCLTCCS-R-DVIVKVDQICHKNSIKFFTGDV 158 (346)
T ss_dssp TCSEEEEESCC-H-HHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEcCCC-H-HHHHHHHHHHHHcCCCEEEEee
Confidence 46789999884 4 4566799999999999997654
No 184
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=46.59 E-value=42 Score=19.59 Aligned_cols=64 Identities=11% Similarity=-0.025 Sum_probs=37.3
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCC-EEEe-CCHhH--HhhHhCCCCceEEEEEecCc
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIP-YCYV-PSKKD--IGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP-~~~~-~sk~e--LG~a~G~~~~~~v~~i~~~~ 71 (91)
+..+......+.++.+..|.++. .+..+.++++++ +... ....+ +.+..|....=++.+++.+|
T Consensus 55 ~l~~~~~~~~~~~v~v~~d~~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G 122 (148)
T 3hcz_A 55 DWWLKNRAKGIQVYAANIERKDE----EWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNK 122 (148)
T ss_dssp HHHHHHGGGTEEEEEEECCSSSH----HHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTC
T ss_pred HHHHHhccCCEEEEEEEecCCHH----HHHHHHHHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCC
Confidence 33444444447788887776653 345566777766 3322 33333 88888876554566665543
No 185
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=46.41 E-value=52 Score=20.62 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=37.6
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcC----CCCEEEe-CCHhHHhhHhCCC------CceEEEEEec
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDK----DIPYCYV-PSKKDIGEALGRK------KPCICVIVKS 69 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~----~IP~~~~-~sk~eLG~a~G~~------~~~~v~~i~~ 69 (91)
++..+.++...+.++.|+.|- + . .+..+++++ ++++-.. ....++.++.|.. ..-+..+++.
T Consensus 55 ~~~~~~~~~~~v~vv~vs~d~-~-~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~ 127 (187)
T 1we0_A 55 QKEYAELKKLGVEVYSVSTDT-H-F---VHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDP 127 (187)
T ss_dssp HHHHHHHHHTTEEEEEEESSC-H-H---HHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECT
T ss_pred HHHHHHHHHcCCEEEEEECCC-H-H---HHHHHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECC
Confidence 344555665568888888874 3 2 234455666 6766443 3456888999875 3334555654
No 186
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=46.12 E-value=20 Score=25.11 Aligned_cols=43 Identities=2% Similarity=-0.065 Sum_probs=28.8
Q ss_pred hHHHHHHHhCCceEEEEeC-CC-CchhHHhhHHHHHhcCCCCEEEe
Q psy6265 3 STVQGPLQRKTIMLCIFAG-DV-TPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 3 kev~kai~~gka~lViiA~-D~-sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
.+..+++..++.++|++.. +. .... ...|.++|++++++++.-
T Consensus 159 ~~l~~~i~~~~~~~v~~~~~~~~~~~~-l~~l~~l~~~~~~~li~D 203 (420)
T 3gbx_A 159 DEMAKLAKEHKPKMIIGGFSAYSGVVD-WAKMREIADSIGAYLFVD 203 (420)
T ss_dssp HHHHHHHHHHCCSEEEECCTTCCSCCC-HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhcCCeEEEEecCccCCccC-HHHHHHHHHHcCCEEEEE
Confidence 3456677776788888843 22 1223 456899999999987653
No 187
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=46.12 E-value=45 Score=19.82 Aligned_cols=57 Identities=2% Similarity=-0.070 Sum_probs=38.2
Q ss_pred CceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC----CHhHHhhHhCCCCceEEEEEecCc
Q psy6265 13 TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP----SKKDIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 13 ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~----sk~eLG~a~G~~~~~~v~~i~~~~ 71 (91)
.+.++.|.-|.+. -...+..+.+++++++-.+. ...++.+..|....=+..+++.+|
T Consensus 60 ~v~~v~v~~d~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G 120 (154)
T 3ia1_A 60 GVPFYVISREPRD--TREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREG 120 (154)
T ss_dssp CCCEEEEECCTTC--CHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTS
T ss_pred CCeEEEEeCCCcc--cHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCcccEEEEECCCC
Confidence 5777778775222 23456778888888876544 567888888876555566666554
No 188
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=45.79 E-value=41 Score=19.98 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=26.3
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHh-cCCCCEEEeCCHh
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCE-DKDIPYCYVPSKK 50 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~-~~~IP~~~~~sk~ 50 (91)
.+....++.+...+||+--+....+-...+..+.+ ..++|++.+.+..
T Consensus 37 ~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~ 85 (155)
T 1qkk_A 37 TEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHG 85 (155)
T ss_dssp HHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGG
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCC
Confidence 34555666777888888766532222222222222 3478988765433
No 189
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=45.49 E-value=56 Score=22.95 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=40.6
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCE-EEeCCHhHHhhHhC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPY-CYVPSKKDIGEALG 57 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~-~~~~sk~eLG~a~G 57 (91)
|+..+..-|--.++++..|.++.+ ...+...|++.|+.+ +.+.|.+|+-++..
T Consensus 127 qv~~A~~~GAD~VlLi~a~l~~~~-l~~l~~~a~~lGl~~lvev~t~ee~~~A~~ 180 (272)
T 3qja_A 127 QIHEARAHGADMLLLIVAALEQSV-LVSMLDRTESLGMTALVEVHTEQEADRALK 180 (272)
T ss_dssp HHHHHHHTTCSEEEEEGGGSCHHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEecccCCHHH-HHHHHHHHHHCCCcEEEEcCCHHHHHHHHH
Confidence 577777888777777788888755 456888999999875 56789998877653
No 190
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=45.31 E-value=33 Score=23.53 Aligned_cols=34 Identities=9% Similarity=0.047 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHh
Q psy6265 14 IMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKK 50 (91)
Q Consensus 14 a~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~ 50 (91)
+.+||.|.|..+ +-..+-..|+ .+||+..+.+.+
T Consensus 92 adLVIaAT~d~~--~N~~I~~~ak-~gi~VNvvD~p~ 125 (223)
T 3dfz_A 92 VFFIVVATNDQA--VNKFVKQHIK-NDQLVNMASSFS 125 (223)
T ss_dssp CSEEEECCCCTH--HHHHHHHHSC-TTCEEEC-----
T ss_pred CCEEEECCCCHH--HHHHHHHHHh-CCCEEEEeCCcc
Confidence 568888888543 4566777888 999977665543
No 191
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=45.29 E-value=54 Score=25.23 Aligned_cols=50 Identities=6% Similarity=0.092 Sum_probs=34.9
Q ss_pred hHHHHHHHhCCceEEEEeCCC-----CchhHHhhHHHHHhcCCCCEEEeCCHh---HHhhHhC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDV-----TPIEIMCHLPAVCEDKDIPYCYVPSKK---DIGEALG 57 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~-----sp~~~~~~l~~lc~~~~IP~~~~~sk~---eLG~a~G 57 (91)
...++.|.+-.+.+||++.|+ ++. . .+++.+++|..+....+. +|.+++|
T Consensus 272 ~~~le~I~~~g~~vvi~~~~I~~~a~~~~--a---l~~L~~~~I~av~~~~k~~le~ia~~tG 329 (528)
T 3p9d_D 272 LNICKKIKKAKCNVLLIQKSILRDAVNDL--A---LHFLSKLNIMVVKDIEREEIEFLSKGLG 329 (528)
T ss_dssp HHHHHHHHHTTCCEEEESSCSCTTSCSCH--H---HHHHTTTSCCEEECCCTHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEeCCcccccCCHH--H---HHHHHHcCcEEEEeCCHHHHHHHHHHHC
Confidence 455666777779999999999 873 2 234467889888766555 5555666
No 192
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=45.24 E-value=42 Score=19.48 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=15.9
Q ss_pred EEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 17 CIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 17 ViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
||-+..| |. =.+...+-++++|||..+
T Consensus 20 vy~~~~C-p~--C~~ak~~L~~~~i~y~~i 46 (99)
T 3qmx_A 20 IYTWSTC-PF--CMRALALLKRKGVEFQEY 46 (99)
T ss_dssp EEECTTC-HH--HHHHHHHHHHHTCCCEEE
T ss_pred EEEcCCC-hh--HHHHHHHHHHCCCCCEEE
Confidence 3445555 42 234556667888988654
No 193
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=45.21 E-value=33 Score=20.38 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=38.1
Q ss_pred hHHHHHHHhCCceEEEEeCCCCch---hHHhhHHHHHhcCCCCEEEeCCH---hHHhhHhCCCCceEEEEEecCchHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPI---EIMCHLPAVCEDKDIPYCYVPSK---KDIGEALGRKKPCICVIVKSTESVAEL 76 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~---~~~~~l~~lc~~~~IP~~~~~sk---~eLG~a~G~~~~~~v~~i~~~~~~~~~ 76 (91)
.+....+++....+||+--+.... ++...+.. ...++|++.+.+. ...-++... .+..++..+-+.++.
T Consensus 56 ~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~--~~~~~~ii~ls~~~~~~~~~~~~~~---g~~~~l~Kp~~~~~l 130 (150)
T 4e7p_A 56 QEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRS--EKLETKVVVVTTFKRAGYFERAVKA---GVDAYVLKERSIADL 130 (150)
T ss_dssp HHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHH--TTCSCEEEEEESCCCHHHHHHHHHT---TCSEEEETTSCHHHH
T ss_pred HHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHH--hCCCCeEEEEeCCCCHHHHHHHHHC---CCcEEEecCCCHHHH
Confidence 456677777888888887654332 33333322 1346777654432 233333321 233445555444444
Q ss_pred HHHHHHHh
Q psy6265 77 YEEVKQEI 84 (91)
Q Consensus 77 ~~~~~~~~ 84 (91)
.+.|...+
T Consensus 131 ~~~i~~~~ 138 (150)
T 4e7p_A 131 MQTLHTVL 138 (150)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 194
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=45.21 E-value=25 Score=21.23 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=14.4
Q ss_pred hHHhhHHHHHhcCCCCEE
Q psy6265 27 EIMCHLPAVCEDKDIPYC 44 (91)
Q Consensus 27 ~~~~~l~~lc~~~~IP~~ 44 (91)
-+.+++...++++|+|+.
T Consensus 18 ~l~~k~~~~~~~~gi~~~ 35 (106)
T 1e2b_A 18 LLVSKMRAQAEKYEVPVI 35 (106)
T ss_dssp HHHHHHHHHHHHSCCSEE
T ss_pred HHHHHHHHHHHHCCCCeE
Confidence 467788889999999873
No 195
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=45.18 E-value=32 Score=23.46 Aligned_cols=49 Identities=18% Similarity=0.032 Sum_probs=34.5
Q ss_pred HHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhC
Q psy6265 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALG 57 (91)
Q Consensus 9 i~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G 57 (91)
+....+..+++--|++..+-...+.....+.++|++.+.+|.++-..-+
T Consensus 79 ~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~ 127 (256)
T 3iby_A 79 VIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRG 127 (256)
T ss_dssp HHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTT
T ss_pred HhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCC
Confidence 3346677888877776544444566667788999999999888765443
No 196
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=45.13 E-value=19 Score=27.79 Aligned_cols=50 Identities=16% Similarity=0.099 Sum_probs=31.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDI 52 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eL 52 (91)
.++..+++.-.+-++++...-....-...+...|..+++|++.+.+|.++
T Consensus 97 ~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl 146 (528)
T 3tr5_A 97 EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDR 146 (528)
T ss_dssp HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 45566666655555555444322223445778899999999988877654
No 197
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=45.10 E-value=35 Score=23.33 Aligned_cols=38 Identities=8% Similarity=-0.001 Sum_probs=20.2
Q ss_pred HHHHhCCceEEEE-eCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 7 GPLQRKTIMLCIF-AGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 7 kai~~gka~lVii-A~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
+.+...++..+|+ +.|.+. + ......+.+.+||++.+.
T Consensus 54 ~~li~~~vdgiii~~~~~~~--~-~~~~~~a~~~gipvV~~d 92 (316)
T 1tjy_A 54 NNFVNQGYDAIIVSAVSPDG--L-CPALKRAMQRGVKILTWD 92 (316)
T ss_dssp HHHHHTTCSEEEECCSSSST--T-HHHHHHHHHTTCEEEEES
T ss_pred HHHHHcCCCEEEEeCCCHHH--H-HHHHHHHHHCcCEEEEec
Confidence 3343445555554 445432 1 224455677899987554
No 198
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=45.08 E-value=43 Score=19.71 Aligned_cols=48 Identities=8% Similarity=0.163 Sum_probs=28.1
Q ss_pred HHHHhCCceEEEEeC------CCCchhHHhhHHHHHhcCCCCEEEeC---C---HhHHhhHhCCC
Q psy6265 7 GPLQRKTIMLCIFAG------DVTPIEIMCHLPAVCEDKDIPYCYVP---S---KKDIGEALGRK 59 (91)
Q Consensus 7 kai~~gka~lViiA~------D~sp~~~~~~l~~lc~~~~IP~~~~~---s---k~eLG~a~G~~ 59 (91)
+.++++ ++++... .| |. =.+...+-++++|||..+. + +++|-+..|..
T Consensus 13 ~~i~~~--~Vvvy~k~t~~~p~C-p~--C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~ 72 (109)
T 3ipz_A 13 KLVNSE--KVVLFMKGTRDFPMC-GF--SNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWP 72 (109)
T ss_dssp HHHTSS--SEEEEESBCSSSBSS-HH--HHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCS
T ss_pred HHHccC--CEEEEEecCCCCCCC-hh--HHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCC
Confidence 344444 3555555 56 42 3446667788999987543 2 34676666754
No 199
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=44.95 E-value=16 Score=21.59 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=14.9
Q ss_pred hhHHHHHHHhCCceEEE
Q psy6265 2 NSTVQGPLQRKTIMLCI 18 (91)
Q Consensus 2 ~kev~kai~~gka~lVi 18 (91)
+.||.+.|++|++.+++
T Consensus 40 v~qv~~qL~~GeavIvf 56 (78)
T 1y0n_A 40 VERARHALRRGEAVILF 56 (78)
T ss_dssp HHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 36899999999998887
No 200
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=44.82 E-value=43 Score=22.33 Aligned_cols=40 Identities=13% Similarity=-0.010 Sum_probs=22.2
Q ss_pred HHHHHhCCceEEEE-eCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 6 QGPLQRKTIMLCIF-AGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 6 ~kai~~gka~lVii-A~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.+...++.-+|+ ..|.+ . .......+.+.+||++.+.+
T Consensus 50 i~~l~~~~vdgiii~~~~~~--~-~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 50 IDSLAASGAKGFVICTPDPK--L-GSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHTTCCEEEEECSCGG--G-HHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHcCCCEEEEeCCCch--h-hHHHHHHHHHCCCcEEEeCC
Confidence 33343344544444 44432 2 23445567788999988763
No 201
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=44.81 E-value=21 Score=22.11 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=44.0
Q ss_pred CceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCC---------CceEEEE--EecCchHHHHHHHHH
Q psy6265 13 TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRK---------KPCICVI--VKSTESVAELYEEVK 81 (91)
Q Consensus 13 ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~---------~~~~v~~--i~~~~~~~~~~~~~~ 81 (91)
.+.++++.-|.+..+-...+.......++|++.+.+|.+|-..-+.. ....+.. -..+....+.|+.+.
T Consensus 85 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 164 (188)
T 2wjg_A 85 KPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAIS 164 (188)
T ss_dssp CCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHH
Confidence 46677777776542222333444456899999999998885543221 0111111 123456688888888
Q ss_pred HHhhcCC
Q psy6265 82 QEIGALP 88 (91)
Q Consensus 82 ~~~~~~~ 88 (91)
+.+....
T Consensus 165 ~~~~~~~ 171 (188)
T 2wjg_A 165 IAVKDKK 171 (188)
T ss_dssp HHHTTC-
T ss_pred HHHHhcc
Confidence 8776544
No 202
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=44.69 E-value=39 Score=25.93 Aligned_cols=41 Identities=5% Similarity=-0.130 Sum_probs=27.2
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.++.|.+-.+.+||++.|+++.. .| ++.+++|..+...+
T Consensus 263 ~~~le~I~~~g~~vvi~~~~I~~~a--l~---~L~~~~I~av~~~~ 303 (513)
T 3iyg_B 263 KEKVERILKHGINCFINRQLIYNYP--EQ---LFGAAGVMAIEHAD 303 (513)
T ss_pred HHHHHHHHhcCCCEEEEcCCccHHH--HH---HHHHcCceEEecCC
Confidence 3456677777799999999998732 22 33456666655443
No 203
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=44.59 E-value=46 Score=19.43 Aligned_cols=51 Identities=2% Similarity=0.059 Sum_probs=29.0
Q ss_pred HHHHHHhCCceEEEEe-----CCCCchhHHhhHHHHHhcCCCCEEEeC--C----HhHHhhHhCCC
Q psy6265 5 VQGPLQRKTIMLCIFA-----GDVTPIEIMCHLPAVCEDKDIPYCYVP--S----KKDIGEALGRK 59 (91)
Q Consensus 5 v~kai~~gka~lViiA-----~D~sp~~~~~~l~~lc~~~~IP~~~~~--s----k~eLG~a~G~~ 59 (91)
+.+.+.++++ .|+.. ..|..- .....+-++++|+|..+. . +++|-+..|..
T Consensus 8 ~~~~i~~~~v-vvy~~g~~~~~~Cp~C---~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~ 69 (109)
T 1wik_A 8 LKVLTNKASV-MLFMKGNKQEAKCGFS---KQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWP 69 (109)
T ss_dssp HHHHHTTSSE-EEEESSTTTCCCSSTH---HHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCC
T ss_pred HHHHhccCCE-EEEEecCCCCCCCchH---HHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCC
Confidence 4455665553 23444 466432 335556678899986543 2 24677777754
No 204
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=44.25 E-value=64 Score=21.22 Aligned_cols=62 Identities=10% Similarity=0.023 Sum_probs=36.7
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcC-------CCCEEEe-CCHhHHhhHhCCC------CceEEEEEec
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDK-------DIPYCYV-PSKKDIGEALGRK------KPCICVIVKS 69 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~-------~IP~~~~-~sk~eLG~a~G~~------~~~~v~~i~~ 69 (91)
+..+.++...+.+|.|+.|. +.. ...+++++ ++++-.+ ....++.+..|.. ..=+..+++.
T Consensus 81 ~l~~~~~~~~v~vv~Is~D~-~~~----~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~ 155 (220)
T 1zye_A 81 DKASEFHDVNCEVVAVSVDS-HFS----HLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDP 155 (220)
T ss_dssp HHHHHHHHTTEEEEEEESSC-HHH----HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECT
T ss_pred HHHHHHHHCCCEEEEEECCC-HHH----HHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECC
Confidence 44455555668888898883 322 33455554 5565433 3456899999875 2334555654
Q ss_pred C
Q psy6265 70 T 70 (91)
Q Consensus 70 ~ 70 (91)
.
T Consensus 156 ~ 156 (220)
T 1zye_A 156 N 156 (220)
T ss_dssp T
T ss_pred C
Confidence 3
No 205
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=44.14 E-value=45 Score=19.89 Aligned_cols=30 Identities=3% Similarity=0.131 Sum_probs=18.9
Q ss_pred hhHHHHHhcCCCCEEEeC---C---HhHHhhHhCCC
Q psy6265 30 CHLPAVCEDKDIPYCYVP---S---KKDIGEALGRK 59 (91)
Q Consensus 30 ~~l~~lc~~~~IP~~~~~---s---k~eLG~a~G~~ 59 (91)
.+...+-++++|||..+. + +++|-+..|..
T Consensus 35 ~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~ 70 (111)
T 3zyw_A 35 KQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWP 70 (111)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCC
Confidence 345666788999987653 2 34566666653
No 206
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=44.12 E-value=39 Score=22.34 Aligned_cols=44 Identities=14% Similarity=0.010 Sum_probs=22.6
Q ss_pred HHHHHHhCCceEEEE-eCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 5 VQGPLQRKTIMLCIF-AGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 5 v~kai~~gka~lVii-A~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
.++.+..+++.-+|+ ..|.+..+....+...+.+.+||++.+.+
T Consensus 63 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 63 GLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINA 107 (298)
T ss_dssp HHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEec
Confidence 344454555555554 44432100112244456778999997764
No 207
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=44.08 E-value=31 Score=24.40 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=11.8
Q ss_pred HhhHHHHHhcCCCCEEEeC
Q psy6265 29 MCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 29 ~~~l~~lc~~~~IP~~~~~ 47 (91)
...+..++++++|+++|+.
T Consensus 221 l~~l~~~ik~~~v~~if~e 239 (294)
T 3hh8_A 221 ISSLIEKLKVIKPSALFVE 239 (294)
T ss_dssp HHHHHHHHHHSCCSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 3456666777777766543
No 208
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=43.95 E-value=60 Score=20.59 Aligned_cols=62 Identities=8% Similarity=-0.038 Sum_probs=38.0
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhc-------CCCCEEE-eCCHhHHhhHhCCC-----CceEEEEEecC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCED-------KDIPYCY-VPSKKDIGEALGRK-----KPCICVIVKST 70 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~-------~~IP~~~-~~sk~eLG~a~G~~-----~~~~v~~i~~~ 70 (91)
+..+.+....+.+|.|..|- + + .+..++++ +++++-. .....++.+..|.. ..-+..+++.+
T Consensus 58 ~l~~~~~~~~v~vv~Is~d~-~-~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~ 132 (198)
T 1zof_A 58 KRVKDFHEKGFNVIGVSIDS-E-Q---VHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKN 132 (198)
T ss_dssp HTHHHHHHTTEEEEEEESSC-H-H---HHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETT
T ss_pred HHHHHHHHcCCEEEEEECCC-H-H---HHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccCCcccceEEEECCC
Confidence 44455555568888888883 3 2 23445555 6776533 34456889999975 33445666654
No 209
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=43.87 E-value=35 Score=22.52 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=43.6
Q ss_pred HHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC-CHhHHhhHhCCCCc-------eEEEEEecCchHHHHH
Q psy6265 6 QGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP-SKKDIGEALGRKKP-------CICVIVKSTESVAELY 77 (91)
Q Consensus 6 ~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~-sk~eLG~a~G~~~~-------~~v~~i~~~~~~~~~~ 77 (91)
....-+..+..+++.++..+. ..+..+++++++|++... +.....+.+....+ .-+..+..+....+.+
T Consensus 133 ~~~~i~~~~~~liit~~~~~~---~~v~~~a~~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~ 209 (245)
T 3l2b_A 133 QAELIELKVSLLIVTGGHTPS---KEIIELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVK 209 (245)
T ss_dssp HHHHHHTTCSEEEECTTCCCC---HHHHHHHHHHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHH
T ss_pred HHHHHHcCCCEEEECCCCCCC---HHHHHHHHHcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHH
Confidence 333334447777888877653 457788899999997654 44343333332211 1122334444456666
Q ss_pred HHHHHH-hhcCC
Q psy6265 78 EEVKQE-IGALP 88 (91)
Q Consensus 78 ~~~~~~-~~~~~ 88 (91)
+.+.+. +..+|
T Consensus 210 ~~m~~~~~~~~p 221 (245)
T 3l2b_A 210 VTMSETRYSNYP 221 (245)
T ss_dssp HHHHHHCCSEEE
T ss_pred HHHHhcCCceEE
Confidence 666554 44443
No 210
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=43.75 E-value=63 Score=24.29 Aligned_cols=22 Identities=9% Similarity=0.329 Sum_probs=18.6
Q ss_pred hHHHHHHHhCCceEEEEeCCCC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVT 24 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~s 24 (91)
.+++..+.+.++.+|++++|..
T Consensus 42 ~~lv~~~~~~~~D~VliaGDLf 63 (417)
T 4fbw_A 42 NEILEIARERDVDMILLGGDIF 63 (417)
T ss_dssp HHHHHHHHHTTCSEEEECSCCB
T ss_pred HHHHHHHHhcCCCEEEEcCccc
Confidence 4667778889999999999984
No 211
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=43.63 E-value=48 Score=25.49 Aligned_cols=40 Identities=3% Similarity=-0.103 Sum_probs=26.3
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
++.++.|.+-.+.+||++.++++.. . +++.+++|..+..-
T Consensus 266 ~~~v~kI~~~g~nvvi~~~~I~d~a--l---~~L~~~gI~av~~v 305 (529)
T 3iyg_A 266 KERIQKILATGANVILTTGGIDDMC--L---KYFVEAGAMAVRRV 305 (529)
T ss_pred HHHHHHHHhcCCCEEEECCCCCHHH--H---HHHHHcCCceeccC
Confidence 4556667677789999999998732 2 23455566665433
No 212
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=43.36 E-value=56 Score=20.77 Aligned_cols=51 Identities=8% Similarity=-0.018 Sum_probs=29.9
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcC-------CCCEEE-eCCHhHHhhHhCCC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDK-------DIPYCY-VPSKKDIGEALGRK 59 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~-------~IP~~~-~~sk~eLG~a~G~~ 59 (91)
+..+.++...+.+|.|..|. +.+ ...+.+++ ++++-. .....++.+..|..
T Consensus 59 ~l~~~~~~~~v~vv~Is~d~-~~~----~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~ 117 (197)
T 1qmv_A 59 NRAEDFRKLGCEVLGVSVDS-QFT----HLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVL 117 (197)
T ss_dssp HTHHHHHTTTEEEEEEESSC-HHH----HHHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCE
T ss_pred HHHHHHHHCCCEEEEEECCC-HHH----HHHHHHHHHhhCCCCCCceEEEECCcHHHHHHcCCc
Confidence 34455555568888888874 322 23344443 555432 34456899999875
No 213
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=43.31 E-value=48 Score=19.65 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=28.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
.+....+++....+||+--+... .++...+.. ...++|++.+.+
T Consensus 48 ~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~--~~~~~~ii~~s~ 94 (153)
T 3hv2_A 48 TQALQLLASREVDLVISAAHLPQMDGPTLLARIHQ--QYPSTTRILLTG 94 (153)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHH--HCTTSEEEEECC
T ss_pred HHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHh--HCCCCeEEEEEC
Confidence 46677888888999998766543 233333332 235788876654
No 214
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=43.28 E-value=43 Score=25.59 Aligned_cols=50 Identities=8% Similarity=0.023 Sum_probs=34.4
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHh---HHhhHhC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKK---DIGEALG 57 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~---eLG~a~G 57 (91)
++.++.|.+-.+.+||++.|+++. .. +++.+++|-.+.--.+. +|.+++|
T Consensus 228 ~~~le~I~~~g~~lvi~~~~I~~~--al---~~L~~~~I~av~~~~k~~le~ia~~tG 280 (500)
T 3aq1_B 228 REMAEKVIASGANVVFCQKGIDDM--AQ---YYIEKAGIYAVRRVKKSDLKRLSKVTG 280 (500)
T ss_dssp HHHHHHHHTTCCSEEEESSCBCHH--HH---HHHHHTTCEEECSCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCEEEECCCcCHH--HH---HHHHHCCEEEEEeCCHHHHHHHHHHhC
Confidence 566777888889999999999873 22 33456788777655555 4445555
No 215
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=43.24 E-value=44 Score=18.85 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=18.5
Q ss_pred hhHHHHHhcCCCCEEEeC--C----HhHHhhHhCC
Q psy6265 30 CHLPAVCEDKDIPYCYVP--S----KKDIGEALGR 58 (91)
Q Consensus 30 ~~l~~lc~~~~IP~~~~~--s----k~eLG~a~G~ 58 (91)
.+...+-+.++|||..+. . +++|-+..|.
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~ 56 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGN 56 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC
Confidence 356667778899986542 2 3466666773
No 216
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=43.07 E-value=69 Score=21.04 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=36.5
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcC-------CCCEEE-eCCHhHHhhHhCCC------CceEEEEEe
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDK-------DIPYCY-VPSKKDIGEALGRK------KPCICVIVK 68 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~-------~IP~~~-~~sk~eLG~a~G~~------~~~~v~~i~ 68 (91)
++..+.++...+.+|.|+.|. +.+.. .+++.+ ++++-. .....++.++.|.. ..-+..+++
T Consensus 93 ~~l~~~~~~~~v~vv~Is~D~-~~~~~----~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID 167 (222)
T 3ztl_A 93 SDQVEEFNSRNCQVIACSTDS-QYSHL----AWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIID 167 (222)
T ss_dssp HHTHHHHHTTTEEEEEEESSC-HHHHH----HHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEEC
T ss_pred HHHHHHHHHCCCEEEEEECCC-HHHHH----HHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEEC
Confidence 344555665568999999885 32322 333433 565533 33456889999875 223455666
Q ss_pred cC
Q psy6265 69 ST 70 (91)
Q Consensus 69 ~~ 70 (91)
..
T Consensus 168 ~~ 169 (222)
T 3ztl_A 168 PN 169 (222)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 217
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=42.70 E-value=57 Score=20.98 Aligned_cols=73 Identities=8% Similarity=0.036 Sum_probs=43.6
Q ss_pred CCceEEEEeCCCCchh----HHhhHHHHHhcCCCCEEEe--C---CHhHHhhHhCCCCceEEEEEecCchHHHHHHHHHH
Q psy6265 12 KTIMLCIFAGDVTPIE----IMCHLPAVCEDKDIPYCYV--P---SKKDIGEALGRKKPCICVIVKSTESVAELYEEVKQ 82 (91)
Q Consensus 12 gka~lViiA~D~sp~~----~~~~l~~lc~~~~IP~~~~--~---sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~~ 82 (91)
+..+.+|+-.|..+.. -........++.+|.++.+ + +..+|-+........-+-.+.+..+..+.++.|..
T Consensus 114 ~~~~~iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~~~~~~~L~~iA~~~~~~~~~~~~~~~~L~~~~~~i~~ 193 (202)
T 1ijb_A 114 EASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVS 193 (202)
T ss_dssp TSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTTSCHHHHHHHHHHCTTCCCEEESSGGGHHHHHHHHHH
T ss_pred CCCeEEEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecCCcCCHHHHHHHhCCCCcccEEEeCCHHHHHHHHHHHHH
Confidence 3467888888876531 1122334556789987654 3 45678776632212223445666777888888877
Q ss_pred Hh
Q psy6265 83 EI 84 (91)
Q Consensus 83 ~~ 84 (91)
.+
T Consensus 194 ~i 195 (202)
T 1ijb_A 194 YL 195 (202)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 218
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=42.68 E-value=34 Score=24.01 Aligned_cols=46 Identities=17% Similarity=0.378 Sum_probs=27.6
Q ss_pred hHHHHHHHhCCceEEEEeCC-CC----ch-h----HHhhHHHHHhcCCCCEEEeCCHh
Q psy6265 3 STVQGPLQRKTIMLCIFAGD-VT----PI-E----IMCHLPAVCEDKDIPYCYVPSKK 50 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D-~s----p~-~----~~~~l~~lc~~~~IP~~~~~sk~ 50 (91)
+++.+.+++.++.+|++|+| .. |. . +...+..+.+. +|++.+....
T Consensus 51 ~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~--~pv~~i~GNH 106 (336)
T 2q8u_A 51 DKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT--APVVVLPGNH 106 (336)
T ss_dssp HHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHH--SCEEECCC--
T ss_pred HHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhc--CCEEEECCCC
Confidence 45666677788999999999 53 21 1 22333444433 8988776543
No 219
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=42.46 E-value=52 Score=20.44 Aligned_cols=46 Identities=7% Similarity=0.088 Sum_probs=31.0
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCc-----------hhHHhhHHHHHhcCCCCEEEeC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTP-----------IEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp-----------~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
+++.++.+++..++++++..-..| ..+-..+..+|++++++++...
T Consensus 119 l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vD~~ 175 (216)
T 3rjt_A 119 LRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVDVQ 175 (216)
T ss_dssp HHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEECHH
T ss_pred HHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEEEcH
Confidence 356677887778888888522111 1244567788999999998654
No 220
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=42.29 E-value=24 Score=20.62 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=38.8
Q ss_pred hHHHHHHHh-CCceEEEEeCCCC-ch---hHHhhHHHHHhcCCCCEEEeCC---HhHHhhHhCCCCceEEEEEecCchHH
Q psy6265 3 STVQGPLQR-KTIMLCIFAGDVT-PI---EIMCHLPAVCEDKDIPYCYVPS---KKDIGEALGRKKPCICVIVKSTESVA 74 (91)
Q Consensus 3 kev~kai~~-gka~lViiA~D~s-p~---~~~~~l~~lc~~~~IP~~~~~s---k~eLG~a~G~~~~~~v~~i~~~~~~~ 74 (91)
.+....+++ ....+||+--+.. .. ++...+.......++|++.+.+ ....-++... .+..++..+-+.+
T Consensus 39 ~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~---g~~~~l~KP~~~~ 115 (140)
T 3lua_A 39 KKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKF---KVSDYILKPYPTK 115 (140)
T ss_dssp HHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHS---CCSEEEESSCCTT
T ss_pred HHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHc---CCCEEEECCCCHH
Confidence 355566677 7788888877664 32 2333333222356889876543 3344444422 2334444443333
Q ss_pred HHHHHHHH
Q psy6265 75 ELYEEVKQ 82 (91)
Q Consensus 75 ~~~~~~~~ 82 (91)
+....|..
T Consensus 116 ~l~~~i~~ 123 (140)
T 3lua_A 116 RLENSVRS 123 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 221
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=42.26 E-value=51 Score=19.28 Aligned_cols=64 Identities=6% Similarity=-0.047 Sum_probs=39.8
Q ss_pred HHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe-CCHhHHhh--HhCCCCceEEEEEecCch
Q psy6265 5 VQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV-PSKKDIGE--ALGRKKPCICVIVKSTES 72 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~--a~G~~~~~~v~~i~~~~~ 72 (91)
..+..+...+.++.|..|-++. .+..+.+++++++... ....++.. ..|....=+..+++..|.
T Consensus 55 l~~~~~~~~~~~v~v~~d~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~ 121 (142)
T 3ewl_A 55 FVEMVENGTLRVLAIYPDENRE----EWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKR 121 (142)
T ss_dssp HHHHHHHTSEEEEEEECSSCHH----HHHHHHTTSCTTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCB
T ss_pred HHHHhccCCeEEEEEEecCCHH----HHHHHHHHcCCCcceeeCCccchhhHHHcCCCCCCeEEEECCCCC
Confidence 4455555568888888886553 2456678888887543 34445654 677665545666765543
No 222
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=42.12 E-value=68 Score=20.74 Aligned_cols=85 Identities=7% Similarity=0.069 Sum_probs=44.0
Q ss_pred hhHHHHHHHhCCc--eEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC--------CHhHHhhHhC--C--CCceEEEEE
Q psy6265 2 NSTVQGPLQRKTI--MLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP--------SKKDIGEALG--R--KKPCICVIV 67 (91)
Q Consensus 2 ~kev~kai~~gka--~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~--------sk~eLG~a~G--~--~~~~~v~~i 67 (91)
+.+++++|.++.. --|||..|.|.......+..++...+|-++... ...-++.+.. . ...--++++
T Consensus 16 l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~g~~i~~l 95 (255)
T 1qg8_A 16 VAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYA 95 (255)
T ss_dssp HHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCCCSEEEEE
T ss_pred HHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEecccccccccccccCHHHHHHHHHHHcCCCEEEEe
Confidence 4678888876543 246667777765555555555554455555443 2222333221 1 223346667
Q ss_pred ecCchH-HHHHHHHHHHhhc
Q psy6265 68 KSTESV-AELYEEVKQEIGA 86 (91)
Q Consensus 68 ~~~~~~-~~~~~~~~~~~~~ 86 (91)
+..... .+.++.+.+.+.+
T Consensus 96 D~Dd~~~~~~l~~~~~~~~~ 115 (255)
T 1qg8_A 96 TDDNIYMPDRLLKMVRELDT 115 (255)
T ss_dssp ETTEEECTTHHHHHHHHHHH
T ss_pred CCCCccChHHHHHHHHHHHh
Confidence 664332 3345555555543
No 223
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=42.02 E-value=31 Score=22.58 Aligned_cols=54 Identities=11% Similarity=0.002 Sum_probs=33.8
Q ss_pred HHHHHHHh-CCceEEEEeCCCCchh--HHhhHHHHHhcCCCCEE--EeCCHhHHhhHhC
Q psy6265 4 TVQGPLQR-KTIMLCIFAGDVTPIE--IMCHLPAVCEDKDIPYC--YVPSKKDIGEALG 57 (91)
Q Consensus 4 ev~kai~~-gka~lViiA~D~sp~~--~~~~l~~lc~~~~IP~~--~~~sk~eLG~a~G 57 (91)
++.+.++. +..++.++.+.+++.. ....+....++.++|+. .++....+.++..
T Consensus 110 ~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~l~~~g~~v~~~~Ip~~~~~~~a~~ 168 (209)
T 3cwq_A 110 LTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTTAGLPLFKRGIKRYSAFQKASL 168 (209)
T ss_dssp HHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHHHHHHTTCCBCSSCCBCCTHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEEEecCCccchHHHHHHHHHHHcCCchhhccCCCcHHHHHHHH
Confidence 45555655 3455777778776642 33456666667888875 4566666776654
No 224
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=41.96 E-value=49 Score=22.50 Aligned_cols=77 Identities=18% Similarity=0.083 Sum_probs=44.1
Q ss_pred HHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCC---------ceEEEEE--ecCchHHHHH
Q psy6265 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKK---------PCICVIV--KSTESVAELY 77 (91)
Q Consensus 9 i~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~---------~~~v~~i--~~~~~~~~~~ 77 (91)
+....+..+++--|++..+-...+.....+.++|++.+.+|.+|-..-+... ..-+.-+ ..+....+.+
T Consensus 79 ~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~ 158 (258)
T 3a1s_A 79 LLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELK 158 (258)
T ss_dssp HHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHH
T ss_pred HhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHH
Confidence 3445677777777765433222344445567999999999888754433211 0111222 2344567778
Q ss_pred HHHHHHhh
Q psy6265 78 EEVKQEIG 85 (91)
Q Consensus 78 ~~~~~~~~ 85 (91)
+.+.+.++
T Consensus 159 ~~i~~~~~ 166 (258)
T 3a1s_A 159 EKIVEYAQ 166 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 87777664
No 225
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=41.93 E-value=87 Score=22.28 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=45.2
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCC-EEEeCCHhHHhhHhCCC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIP-YCYVPSKKDIGEALGRK 59 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP-~~~~~sk~eLG~a~G~~ 59 (91)
|+..+-.-|--.+++|++-.++.+ ...+..+|.+.|.. ++-+-|.+||-+|+...
T Consensus 118 QI~eAr~~GADaILLI~a~L~~~~-l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~ 173 (258)
T 4a29_A 118 QIDDAYNLGADTVLLIVKILTERE-LESLLEYARSYGMEPLILINDENDLDIALRIG 173 (258)
T ss_dssp HHHHHHHHTCSEEEEEGGGSCHHH-HHHHHHHHHHTTCCCEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHcCCCeeehHHhhcCHHH-HHHHHHHHHHHhHHHHHhcchHHHHHHHhcCC
Confidence 666777778888888999888855 46799999999985 57899999999998765
No 226
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=41.78 E-value=36 Score=21.29 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=37.9
Q ss_pred HHHHHHHh--CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEE-----EeCCHh---HHhhHhCCCC---------ceEE
Q psy6265 4 TVQGPLQR--KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYC-----YVPSKK---DIGEALGRKK---------PCIC 64 (91)
Q Consensus 4 ev~kai~~--gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~-----~~~sk~---eLG~a~G~~~---------~~~v 64 (91)
+..+.+.+ .++.+|.|+-|- . +....+..+++++++++. ...+.+ ++.++.|... ..+.
T Consensus 53 ~~~~~~~~~~~~~~vv~is~d~-~-d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 130 (170)
T 3me7_A 53 KVIPKLGTPGKDFWVITFTFDP-K-DTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVV 130 (170)
T ss_dssp TTHHHHCCBTTTBEEEEEECCT-T-CCHHHHHHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEE
T ss_pred HHHHHhhhcCCceEEEEEECCC-C-CCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceE
Confidence 33444432 458889999884 2 234557778889987642 335544 5555555332 2345
Q ss_pred EEEecCc
Q psy6265 65 VIVKSTE 71 (91)
Q Consensus 65 ~~i~~~~ 71 (91)
.+++..|
T Consensus 131 ~lID~~G 137 (170)
T 3me7_A 131 VVLSPEL 137 (170)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 6676654
No 227
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=41.75 E-value=23 Score=27.81 Aligned_cols=49 Identities=12% Similarity=-0.015 Sum_probs=35.7
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHh
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKK 50 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~ 50 (91)
..||.++++-=..-++++...-....-...+..+|.+++||.+.+-+|-
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKm 129 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKI 129 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEEC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEecc
Confidence 4688899988776677766554432335678899999999988766664
No 228
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=41.60 E-value=42 Score=19.45 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=24.4
Q ss_pred hHHHHHHHh----------CCceEEEEeCCCCchhHHhhHHHHHhc---CCCCEEEeC
Q psy6265 3 STVQGPLQR----------KTIMLCIFAGDVTPIEIMCHLPAVCED---KDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~----------gka~lViiA~D~sp~~~~~~l~~lc~~---~~IP~~~~~ 47 (91)
.+..+.+++ ....+||+--+....+-...+..+-+. .++|++.+.
T Consensus 42 ~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t 99 (149)
T 1k66_A 42 DQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMT 99 (149)
T ss_dssp HHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEE
T ss_pred HHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEe
Confidence 355666665 677888887655322222222233332 578887653
No 229
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=41.53 E-value=7 Score=22.30 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=18.4
Q ss_pred HHHHhcCCCCEEEeCCHhHHhh
Q psy6265 33 PAVCEDKDIPYCYVPSKKDIGE 54 (91)
Q Consensus 33 ~~lc~~~~IP~~~~~sk~eLG~ 54 (91)
..+|+.++||+..++||..+.+
T Consensus 29 vaWcKr~~VPieKif~ktlr~K 50 (62)
T 2b9s_B 29 CSWAKAQDVPINKIFSATIQKK 50 (62)
T ss_dssp HHHHHHTTCCGGGTSCHHHHHH
T ss_pred hhhhhhcCCCHHHHhhHHHHHh
Confidence 5799999999999999876543
No 230
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=41.50 E-value=63 Score=21.29 Aligned_cols=41 Identities=10% Similarity=-0.053 Sum_probs=22.7
Q ss_pred HHHHHHhCCceEEEE-eCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 5 VQGPLQRKTIMLCIF-AGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 5 v~kai~~gka~lVii-A~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
.++.+..+++.-+|+ ..+.+. . ......+.+.+||++.+.+
T Consensus 56 ~~~~l~~~~vdgiI~~~~~~~~--~-~~~~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 56 QILEFVHLKVDAIFITTLDDVY--I-GSAIEEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHTTCSEEEEECSCTTT--T-HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHcCCCEEEEecCChHH--H-HHHHHHHHHcCCCEEEecC
Confidence 344454555555554 444322 2 2344566778999998764
No 231
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=41.46 E-value=38 Score=22.93 Aligned_cols=45 Identities=9% Similarity=0.173 Sum_probs=29.2
Q ss_pred hHHHHHHHhC------CceEEEEeCC-----CCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRK------TIMLCIFAGD-----VTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~g------ka~lViiA~D-----~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+..++++++ +.++|++..- +-|.+....+.++|+++++.++.-.
T Consensus 129 ~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De 184 (359)
T 1svv_A 129 ADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDG 184 (359)
T ss_dssp HHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEc
Confidence 3455666665 3788888643 1122335678999999999776433
No 232
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=41.41 E-value=43 Score=19.07 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=29.0
Q ss_pred hHHHHHHHh-------CCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeCC---HhHHhhHh
Q psy6265 3 STVQGPLQR-------KTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVPS---KKDIGEAL 56 (91)
Q Consensus 3 kev~kai~~-------gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~s---k~eLG~a~ 56 (91)
.+....++. ....+||+--+... .++...+.......++|++.+.+ ....-++.
T Consensus 38 ~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~ 104 (140)
T 1k68_A 38 MEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSY 104 (140)
T ss_dssp HHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHH
Confidence 355666766 67888888765532 23333333222225788876543 33444444
No 233
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=41.27 E-value=54 Score=19.34 Aligned_cols=54 Identities=6% Similarity=0.001 Sum_probs=32.0
Q ss_pred CceEEEEeCCCCchhHHhhHHHHHhcCCCCE--EEeCCHhHHhhHhCCCCceEEEEEecC
Q psy6265 13 TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPY--CYVPSKKDIGEALGRKKPCICVIVKST 70 (91)
Q Consensus 13 ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~--~~~~sk~eLG~a~G~~~~~~v~~i~~~ 70 (91)
.+.++.|..|.++. .+..+.++++++. +......++.+..|....=++.+++..
T Consensus 63 ~~~~v~v~~d~~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~ 118 (152)
T 2lja_A 63 DIHFVSLSCDKNKK----AWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRD 118 (152)
T ss_dssp SEEEEEEECCSCHH----HHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTT
T ss_pred CeEEEEEEccCcHH----HHHHHHHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCC
Confidence 36666666665442 3444556667664 233445689999987655456666643
No 234
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=41.23 E-value=55 Score=21.57 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=24.1
Q ss_pred HHHHHHHhCCceEEEEeC-CCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 4 TVQGPLQRKTIMLCIFAG-DVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 4 ev~kai~~gka~lViiA~-D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
+..+.+..+++.-+|+.. +.++ .....+.+.+||++.+.+
T Consensus 60 ~~~~~~~~~~vdgiIi~~~~~~~-----~~~~~l~~~~iPvV~~~~ 100 (292)
T 3k4h_A 60 GVVKMVQGRQIGGIILLYSREND-----RIIQYLHEQNFPFVLIGK 100 (292)
T ss_dssp HHHHHHHTTCCCEEEESCCBTTC-----HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHcCCCCEEEEeCCCCCh-----HHHHHHHHCCCCEEEECC
Confidence 345566666666666544 3322 234456688999987754
No 235
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=41.20 E-value=37 Score=24.66 Aligned_cols=35 Identities=11% Similarity=0.225 Sum_probs=26.8
Q ss_pred CceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 13 TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 13 ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
...+||.+.|-.+ .....+.+.|.++++|++....
T Consensus 208 ~~DlVvd~~Dn~~-~~r~~ln~~c~~~~~p~i~~~~ 242 (353)
T 3h5n_A 208 EADIWVVSADHPF-NLINWVNKYCVRANQPYINAGY 242 (353)
T ss_dssp CCSEEEECCCCST-THHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCEEEEecCChH-HHHHHHHHHHHHhCCCEEEEEE
Confidence 4668999988544 2456788999999999997653
No 236
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=41.06 E-value=69 Score=22.41 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=28.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCC----ch-hHHhhHHH---HHhcCCCCEEEeCCH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVT----PI-EIMCHLPA---VCEDKDIPYCYVPSK 49 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~s----p~-~~~~~l~~---lc~~~~IP~~~~~sk 49 (91)
+++...++..++.+|++|+|.- |. +....+.. .-...++|++.+...
T Consensus 30 ~~~~~~~~~~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~GN 84 (333)
T 1ii7_A 30 KNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGN 84 (333)
T ss_dssp HHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEECCT
T ss_pred HHHHHHHHhcCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEeCCc
Confidence 3455666778899999999974 21 11122211 122457998876644
No 237
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=41.01 E-value=48 Score=25.58 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=32.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHh---HHhhHhC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKK---DIGEALG 57 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~---eLG~a~G 57 (91)
+..++.|.+-.+.+||++.|+++. .. +++.+++|-.+.--.+. +|.+++|
T Consensus 275 ~~~le~I~~~g~~lvi~~~~I~~~--al---~~L~~~~I~av~~v~k~~le~ia~~tG 327 (543)
T 1a6d_B 275 REMVDKIKSVGANVVITQKGIDDM--AQ---HYLSRAGIYAVRRVKKSDMDKLAKATG 327 (543)
T ss_dssp HHHHHHHHHTTCCEEEESSCBCHH--HH---HHHHHTTCEEECSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEECCCcCHH--HH---HHHHHCCeeEeccCCHHHHHHHHHHhC
Confidence 456677777789999999999873 22 23456778666555554 3444444
No 238
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=40.88 E-value=33 Score=24.48 Aligned_cols=44 Identities=2% Similarity=0.039 Sum_probs=32.2
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSK 49 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk 49 (91)
+.++.+.+++.+++.||.-...++ .+. ..++++.+++++.+..-
T Consensus 228 l~~l~~~ik~~~v~~If~e~~~~~-~~~---~~ia~e~g~~v~~l~~l 271 (312)
T 2o1e_A 228 LAKLKTYAKEHNVKVIYFEEIASS-KVA---DTLASEIGAKTEVLNTL 271 (312)
T ss_dssp HHHHHHHTTSSCCCEEECSSCCCH-HHH---HHHHHHTCCEEECCCCT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCh-HHH---HHHHHHhCCcEEEeccc
Confidence 356778888899999988888877 443 34578899988765433
No 239
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=40.76 E-value=40 Score=23.38 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=29.6
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
.+..+.+.+..++++++|-++.. .. -+..+-+..+||++-+
T Consensus 64 ~~~~~~L~~~g~d~iviaCNTas-~~--~l~~lr~~~~iPvigi 104 (273)
T 2oho_A 64 WELVNFLLTQNVKMIVFACNTAT-AV--AWEEVKAALDIPVLGV 104 (273)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHH-HH--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHCCCCEEEEeCchHh-HH--HHHHHHHhCCCCEEec
Confidence 35567777878999999998744 12 1456667789999874
No 240
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=40.68 E-value=54 Score=22.05 Aligned_cols=40 Identities=8% Similarity=0.074 Sum_probs=21.9
Q ss_pred HHHHHhCCc-eEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 6 QGPLQRKTI-MLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 6 ~kai~~gka-~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.+..+++ .+++.+.|.+. . ......+.+.+||++.+.+
T Consensus 51 i~~l~~~~vdgiIi~~~~~~~--~-~~~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 51 IENMINRGVDVLVIIPYNGQV--L-SNVVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp HHHHHHTTCSEEEEECSSTTS--C-HHHHHHHHTTTCEEEEESS
T ss_pred HHHHHHcCCCEEEEeCCChhh--h-HHHHHHHHHCCCeEEEECC
Confidence 444444454 44444544432 1 2344556788999987654
No 241
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=40.67 E-value=29 Score=22.68 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=45.2
Q ss_pred CCceEEEEeCCCCchhH--HhhHHHHHhcCCCCEEEeC--C------------HhHHhhHhCCCCceEEEEEecCchHHH
Q psy6265 12 KTIMLCIFAGDVTPIEI--MCHLPAVCEDKDIPYCYVP--S------------KKDIGEALGRKKPCICVIVKSTESVAE 75 (91)
Q Consensus 12 gka~lViiA~D~sp~~~--~~~l~~lc~~~~IP~~~~~--s------------k~eLG~a~G~~~~~~v~~i~~~~~~~~ 75 (91)
+..+.||+-.|..+..- .......+++.+|++..++ + ..+|-...+......+-.+.+..+..+
T Consensus 123 ~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~L~~ 202 (223)
T 2b2x_A 123 GVKKVMVIVTDGESHDNYRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVT 202 (223)
T ss_dssp TSEEEEEEEESSCCTTGGGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGG
T ss_pred CCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEecCccccccccchhHHHHHHHHhCCCchhcEEEeCCHHHHHH
Confidence 34678888888765321 2234556678899876543 3 256766666533333444566677777
Q ss_pred HHHHHHHHhh
Q psy6265 76 LYEEVKQEIG 85 (91)
Q Consensus 76 ~~~~~~~~~~ 85 (91)
.|+.|.+.+-
T Consensus 203 i~~~i~~~ic 212 (223)
T 2b2x_A 203 IVKALGERIF 212 (223)
T ss_dssp GHHHHHTTTC
T ss_pred HHHHHHHhhc
Confidence 7877776653
No 242
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=40.61 E-value=40 Score=23.87 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=29.1
Q ss_pred HHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC--------------HhHHhhHhCCCC
Q psy6265 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS--------------KKDIGEALGRKK 60 (91)
Q Consensus 9 i~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s--------------k~eLG~a~G~~~ 60 (91)
|.+-+--|||.... ++. .+..+.+..|||++.+.. -..||+++|++.
T Consensus 92 Ilal~PDLIi~~~~-~~~----~~~~~~~~~GiPvv~~~~~~~~~~~~~~~~~~i~~lG~~lG~e~ 152 (346)
T 2etv_A 92 LITLQPDVVFITYV-DRX----TAXDIQEXTGIPVVVLSYGNLGTFEDEDLFRSIELAGXILGREE 152 (346)
T ss_dssp HHHHCCSEEEEESC-CHH----HHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred HhcCCCCEEEEeCC-ccc----hHHHHHHhcCCcEEEEecCccCcccHHHHHHHHHHHHHHcCCHH
Confidence 33344567776543 332 244555677999987652 236899999863
No 243
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=40.57 E-value=42 Score=24.36 Aligned_cols=49 Identities=6% Similarity=-0.019 Sum_probs=27.4
Q ss_pred hHHHHHHHhCCceEEEEeCCCC-chhHHhhHHHHHhcCCCC-EEEeCCHhHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVT-PIEIMCHLPAVCEDKDIP-YCYVPSKKDI 52 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~s-p~~~~~~l~~lc~~~~IP-~~~~~sk~eL 52 (91)
+.+...+..-.+-++++..+-. ...... ...+++..++| ++.+.+|.+|
T Consensus 90 ~~~~~~~~~aD~~ilVvda~~g~~~qt~~-~l~~~~~~~ip~iivviNK~Dl 140 (405)
T 2c78_A 90 KNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQVGVPYIVVFMNKVDM 140 (405)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHHTTCCCEEEEEECGGG
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHHcCCCEEEEEEECccc
Confidence 3445555554555555554322 223333 44677888999 6666666655
No 244
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=40.55 E-value=57 Score=19.41 Aligned_cols=58 Identities=5% Similarity=-0.001 Sum_probs=31.9
Q ss_pred CceEEEEeCCCCc--hhHHhhHHHHHhcCCCCEEE-eCCHhH------HhhHhCCCCceEEEEEecC
Q psy6265 13 TIMLCIFAGDVTP--IEIMCHLPAVCEDKDIPYCY-VPSKKD------IGEALGRKKPCICVIVKST 70 (91)
Q Consensus 13 ka~lViiA~D~sp--~~~~~~l~~lc~~~~IP~~~-~~sk~e------LG~a~G~~~~~~v~~i~~~ 70 (91)
.+.++.|..|... .+-...+..+++++++++-. .....+ +.+..|....=+..+++..
T Consensus 64 ~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~ 130 (160)
T 3lor_A 64 QVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRK 130 (160)
T ss_dssp TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTT
T ss_pred CcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccCccceEEEECCC
Confidence 3666666654110 01123456677788876532 233333 8888887654445666644
No 245
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=40.54 E-value=48 Score=18.52 Aligned_cols=73 Identities=5% Similarity=-0.015 Sum_probs=34.5
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHh-cCCCCEEEeCC---HhHHhhHhCCCCceEEEEEecCchHHHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCE-DKDIPYCYVPS---KKDIGEALGRKKPCICVIVKSTESVAELYE 78 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~-~~~IP~~~~~s---k~eLG~a~G~~~~~~v~~i~~~~~~~~~~~ 78 (91)
.+....+++....+||+--+....+-...+..+.+ ..++|++.+.+ ....-++... .+...+..+-+.++..+
T Consensus 37 ~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~---g~~~~l~KP~~~~~l~~ 113 (120)
T 1tmy_A 37 REAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKA---GAKDFIVKPFQPSRVVE 113 (120)
T ss_dssp HHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHT---TCCEEEESSCCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHh---CcceeEeCCCCHHHHHH
Confidence 35566666677778877655432121222222222 24678766543 3333444321 22344555544444333
No 246
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=40.38 E-value=53 Score=22.63 Aligned_cols=42 Identities=14% Similarity=0.373 Sum_probs=28.6
Q ss_pred HHHHHHHhCCceEEEEeCCCCch------hHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPI------EIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~------~~~~~l~~lc~~~~IP~~~ 45 (91)
+..+++++.+.++|++.+=-+|. .-...+.++|++++++++.
T Consensus 151 ~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 198 (391)
T 3dzz_A 151 DLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLIS 198 (391)
T ss_dssp HHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEE
Confidence 45666766788898885532221 2356788999999998763
No 247
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=40.31 E-value=56 Score=19.24 Aligned_cols=64 Identities=8% Similarity=-0.038 Sum_probs=39.7
Q ss_pred HHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHh---HHhhHhCCCCceEEEEEecCch
Q psy6265 5 VQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKK---DIGEALGRKKPCICVIVKSTES 72 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~---eLG~a~G~~~~~~v~~i~~~~~ 72 (91)
..+..+...+.++-|+.|-++. .+....+++++++....+.. .+.+..|....=+..+++..|.
T Consensus 59 l~~~~~~~~~~vi~i~~d~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~ 125 (142)
T 3eur_A 59 INGFTAAKKLKVLSIYPDEELD----EWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKT 125 (142)
T ss_dssp HHHHHHTTSEEEEEEECSSCHH----HHHHHGGGSCTTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCB
T ss_pred HHHHhccCCeEEEEEEcCCCHH----HHHHHHHhcccccccccCccchhhhhhhcCCCcCCeEEEECCCCc
Confidence 3445555668888888876542 24455677888776555443 3677777664445666766553
No 248
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=40.30 E-value=23 Score=21.93 Aligned_cols=71 Identities=10% Similarity=0.162 Sum_probs=41.6
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCC-CEEEeC--CHhHHhhHhCCCCc------eEEEEEecCch----------
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDI-PYCYVP--SKKDIGEALGRKKP------CICVIVKSTES---------- 72 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~I-P~~~~~--sk~eLG~a~G~~~~------~~v~~i~~~~~---------- 72 (91)
..+.++.|+.|. +.. +..+++++++ ++-... ...++.++.|.... -+..+++..|.
T Consensus 73 ~~v~vv~is~d~-~~~----~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~ 147 (163)
T 1psq_A 73 DNTVVLTVSMDL-PFA----QKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNI 147 (163)
T ss_dssp TTEEEEEEESSC-HHH----HHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBT
T ss_pred CCcEEEEEECCC-HHH----HHHHHHhcCCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCCc
Confidence 357888888874 422 4456677777 654333 35689999987521 24556665432
Q ss_pred -HHHHHHHHHHHhhcC
Q psy6265 73 -VAELYEEVKQEIGAL 87 (91)
Q Consensus 73 -~~~~~~~~~~~~~~~ 87 (91)
....++++.+.+++|
T Consensus 148 ~~~~~~~~~l~~l~~l 163 (163)
T 1psq_A 148 NSEPNFEAAIAAAKAL 163 (163)
T ss_dssp TSCCCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhC
Confidence 122346666666653
No 249
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=40.29 E-value=53 Score=20.56 Aligned_cols=52 Identities=6% Similarity=0.141 Sum_probs=31.3
Q ss_pred hHHHHHHHhCCceEEEEeC------CCCchhHHhhHHHHHhcCCCCEEEeC------CHhHHhhHhCCC
Q psy6265 3 STVQGPLQRKTIMLCIFAG------DVTPIEIMCHLPAVCEDKDIPYCYVP------SKKDIGEALGRK 59 (91)
Q Consensus 3 kev~kai~~gka~lViiA~------D~sp~~~~~~l~~lc~~~~IP~~~~~------sk~eLG~a~G~~ 59 (91)
..+.+.+..++ ++|... .| |. =..+..+-++++|||..+. .+++|.+..|..
T Consensus 26 ~~v~~~i~~~~--Vvvy~ks~~~~~~C-p~--C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~ 89 (135)
T 2wci_A 26 EKIQRQIAENP--ILLYMKGSPKLPSC-GF--SAQAVQALAACGERFAYVDILQNPDIRAELPKYANWP 89 (135)
T ss_dssp HHHHHHHHHCS--EEEEESBCSSSBSS-HH--HHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCC
T ss_pred HHHHHHhccCC--EEEEEEecCCCCCC-cc--HHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCC
Confidence 34556666664 444443 56 42 2346667788999987654 235777777764
No 250
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=40.12 E-value=52 Score=18.88 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=36.9
Q ss_pred hHHHHHHHhCC-ceEEEEeCCCCchhHHhhHHHHHh--cCCCCEEEeCC---HhHHhhHhCCCCceEEEEEecCchHHHH
Q psy6265 3 STVQGPLQRKT-IMLCIFAGDVTPIEIMCHLPAVCE--DKDIPYCYVPS---KKDIGEALGRKKPCICVIVKSTESVAEL 76 (91)
Q Consensus 3 kev~kai~~gk-a~lViiA~D~sp~~~~~~l~~lc~--~~~IP~~~~~s---k~eLG~a~G~~~~~~v~~i~~~~~~~~~ 76 (91)
.+....+..+. ..+||+--+....+-...+..+-+ ..++|++.+.+ ....-++.. ..+..++..+-+.++.
T Consensus 41 ~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~---~g~~~~l~KP~~~~~l 117 (136)
T 3hdv_A 41 EEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMH---LGVVDFLLKPVDLGKL 117 (136)
T ss_dssp HHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHH---TTCSEEEESSCCHHHH
T ss_pred HHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHh---CCcceEEeCCCCHHHH
Confidence 34556666666 788888655433222222222222 25677766543 233333432 1233455555554444
Q ss_pred HHHHHHH
Q psy6265 77 YEEVKQE 83 (91)
Q Consensus 77 ~~~~~~~ 83 (91)
...|.+.
T Consensus 118 ~~~i~~~ 124 (136)
T 3hdv_A 118 LELVNKE 124 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 251
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=40.10 E-value=44 Score=22.61 Aligned_cols=41 Identities=5% Similarity=0.175 Sum_probs=26.6
Q ss_pred hHHHHHHHhCCc--eEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRKTI--MLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka--~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
..+++++.++.. .++.+-+|-.. ......|+++|||+..+.
T Consensus 16 ~~~l~~l~~~~~~~~i~~Vvs~~~~----~~~~~~A~~~gIp~~~~~ 58 (216)
T 2ywr_A 16 QAIIDAIESGKVNASIELVISDNPK----AYAIERCKKHNVECKVIQ 58 (216)
T ss_dssp HHHHHHHHTTSSCEEEEEEEESCTT----CHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHhCCCCCeEEEEEeCCCC----hHHHHHHHHcCCCEEEeC
Confidence 456788877764 56555555322 125678999999998644
No 252
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=40.08 E-value=16 Score=22.67 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=37.9
Q ss_pred ceEEEEeCCCC------chhHHhhHHHHHhc-----CCCCEEEeCCHhHHhhH---------hCCCCce-EEEE--EecC
Q psy6265 14 IMLCIFAGDVT------PIEIMCHLPAVCED-----KDIPYCYVPSKKDIGEA---------LGRKKPC-ICVI--VKST 70 (91)
Q Consensus 14 a~lViiA~D~s------p~~~~~~l~~lc~~-----~~IP~~~~~sk~eLG~a---------~G~~~~~-~v~~--i~~~ 70 (91)
+..+++.=|++ ..+....+..+..+ .++|++.+.+|.+|-.. +... .. .+.- -..+
T Consensus 98 ~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~ 176 (198)
T 3t1o_A 98 VDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE-GKFPVLEAVATEG 176 (198)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT-CCSCEEECBGGGT
T ss_pred CCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhc-CCceEEEEecCCC
Confidence 55566666665 22233334444333 68999999988776432 2211 11 1111 2345
Q ss_pred chHHHHHHHHHHHhh
Q psy6265 71 ESVAELYEEVKQEIG 85 (91)
Q Consensus 71 ~~~~~~~~~~~~~~~ 85 (91)
....+.|+.|.+.+.
T Consensus 177 ~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 177 KGVFETLKEVSRLVL 191 (198)
T ss_dssp BTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 556777777776653
No 253
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=39.92 E-value=58 Score=23.66 Aligned_cols=50 Identities=4% Similarity=-0.152 Sum_probs=31.1
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCE-EEeCC-HhHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPY-CYVPS-KKDI 52 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~-~~~~s-k~eL 52 (91)
.+.+...++.-.+-++++. +-....-......+++..++|. +.+.+ |.+|
T Consensus 74 ~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 74 LKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp HHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred HHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 3556667766667777777 4332222333456778899998 66666 6554
No 254
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=39.59 E-value=21 Score=25.59 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=16.9
Q ss_pred HHhhHHHHHhcCCCCEEEeCCHhHH
Q psy6265 28 IMCHLPAVCEDKDIPYCYVPSKKDI 52 (91)
Q Consensus 28 ~~~~l~~lc~~~~IP~~~~~sk~eL 52 (91)
....+...|+..++|.+.+.||.+|
T Consensus 105 ~i~r~L~~~~~~~~~~vivlnK~DL 129 (307)
T 1t9h_A 105 LLDRFLVLVEANDIQPIICITKMDL 129 (307)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECGGG
T ss_pred HHHHHHHHHHHCCCCEEEEEECCcc
Confidence 4555666667777777777777665
No 255
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=39.58 E-value=67 Score=21.45 Aligned_cols=40 Identities=8% Similarity=0.077 Sum_probs=24.2
Q ss_pred HHHHHHHhCCceEEEEeC-CCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 4 TVQGPLQRKTIMLCIFAG-DVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 4 ev~kai~~gka~lViiA~-D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
+..+.+..+++.-+|+.. +.+. . ....+.+.+||++.+.+
T Consensus 56 ~~~~~l~~~~vdGiIi~~~~~~~-~----~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 56 SLIHLVETRRVDALIVAHTQPED-F----RLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHTCCSEEEECSCCSSC-H----HHHHHHHTTCCEEEESC
T ss_pred HHHHHHHcCCCCEEEEeCCCCCh-H----HHHHHHhCCCCEEEECC
Confidence 455666666665555544 4333 2 33455788999998765
No 256
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=39.56 E-value=56 Score=18.98 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=26.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+....++.....+||+--+... .++...+.......++|++.+.
T Consensus 37 ~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls 84 (138)
T 3c3m_A 37 EECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLT 84 (138)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEE
T ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEE
Confidence 45667778888888888765432 2333333221123478887654
No 257
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=39.51 E-value=63 Score=19.60 Aligned_cols=61 Identities=7% Similarity=0.117 Sum_probs=32.7
Q ss_pred hHHHHHHHhCCceEEEEeC------CCCchhHHhhHHHHHhcCCCC-EEEe--CC----HhHHhhHhCCCCceEEEEEec
Q psy6265 3 STVQGPLQRKTIMLCIFAG------DVTPIEIMCHLPAVCEDKDIP-YCYV--PS----KKDIGEALGRKKPCICVIVKS 69 (91)
Q Consensus 3 kev~kai~~gka~lViiA~------D~sp~~~~~~l~~lc~~~~IP-~~~~--~s----k~eLG~a~G~~~~~~v~~i~~ 69 (91)
..+.+.+.+++ +|+... .| |. =.+...+-++++|| |..+ .. +++|-+..|.. ..-..+++.
T Consensus 11 ~~v~~~i~~~~--Vvvfsk~t~~~p~C-p~--C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~-tvP~vfI~g 84 (118)
T 2wem_A 11 EQLDALVKKDK--VVVFLKGTPEQPQC-GF--SNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWP-TIPQVYLNG 84 (118)
T ss_dssp HHHHHHHHHSS--EEEEESBCSSSBSS-HH--HHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCC-SSCEEEETT
T ss_pred HHHHHHhccCC--EEEEEecCCCCCcc-HH--HHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCC-CcCeEEECC
Confidence 34556666664 555555 46 42 23466667889996 6543 32 24555555643 222445543
No 258
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=39.46 E-value=42 Score=19.89 Aligned_cols=76 Identities=5% Similarity=0.041 Sum_probs=38.2
Q ss_pred hHHHHHHHhCCceEEEEeCCCCch---hHHhhHHHHHhcCCCCEEEeCC---HhHHhhHhCCCCceEEEEEecCchHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPI---EIMCHLPAVCEDKDIPYCYVPS---KKDIGEALGRKKPCICVIVKSTESVAEL 76 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~---~~~~~l~~lc~~~~IP~~~~~s---k~eLG~a~G~~~~~~v~~i~~~~~~~~~ 76 (91)
.+....+++....+||+--+.... ++...+... ..++|++.+.+ ....-++... .+..++..+-+.++.
T Consensus 51 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~---g~~~~l~Kp~~~~~l 125 (152)
T 3eul_A 51 AAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSY--ELPTRVLLISAHDEPAIVYQALQQ---GAAGFLLKDSTRTEI 125 (152)
T ss_dssp HHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHT--TCSCEEEEEESCCCHHHHHHHHHT---TCSEEEETTCCHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCeEEEEEccCCHHHHHHHHHc---CCCEEEecCCCHHHH
Confidence 456677777888888887655332 333333221 34677766543 2233334322 223445555444444
Q ss_pred HHHHHHH
Q psy6265 77 YEEVKQE 83 (91)
Q Consensus 77 ~~~~~~~ 83 (91)
.+.+...
T Consensus 126 ~~~i~~~ 132 (152)
T 3eul_A 126 VKAVLDC 132 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 259
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=39.34 E-value=51 Score=21.76 Aligned_cols=41 Identities=15% Similarity=0.016 Sum_probs=23.0
Q ss_pred HHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 6 QGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 6 ~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.+...++.-+|+...- + .........+.+.+||++.+.+
T Consensus 54 ~~~l~~~~vdgiIi~~~~-~-~~~~~~~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 54 IQTLIAQKPDAIIEQLGN-L-DVLNPWLQKINDAGIPLFTVDT 94 (291)
T ss_dssp HHHHHHHCCSEEEEESSC-H-HHHHHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHcCCCEEEEeCCC-h-hhhHHHHHHHHHCCCcEEEecC
Confidence 444444455555544322 2 1223455667788999998764
No 260
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=39.30 E-value=66 Score=20.86 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=21.4
Q ss_pred HHHHhCCceEEEEeC-CCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 7 GPLQRKTIMLCIFAG-DVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 7 kai~~gka~lViiA~-D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
..+.++++.-+|+.. |.+. .......+.+.+||++.+.+
T Consensus 53 ~l~~~~~vdgii~~~~~~~~---~~~~~~~~~~~~ipvV~~~~ 92 (276)
T 3ksm_A 53 YHLSQAPPDALILAPNSAED---LTPSVAQYRARNIPVLVVDS 92 (276)
T ss_dssp HHHHHSCCSEEEECCSSTTT---THHHHHHHHHTTCCEEEESS
T ss_pred HHHHhCCCCEEEEeCCCHHH---HHHHHHHHHHCCCcEEEEec
Confidence 344555255555544 4322 12344566788999987754
No 261
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=39.12 E-value=50 Score=21.84 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=23.3
Q ss_pred HHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 6 QGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 6 ~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.+...++.-+|+..--.+ . ...+...+.+.+||++.+.+
T Consensus 62 i~~l~~~~vdgiii~~~~~~-~-~~~~~~~~~~~~iPvV~~~~ 102 (304)
T 3gbv_A 62 SQAVIEEQPDGVMFAPTVPQ-Y-TKGFTDALNELGIPYIYIDS 102 (304)
T ss_dssp HHHHHTTCCSEEEECCSSGG-G-THHHHHHHHHHTCCEEEESS
T ss_pred HHHHHhcCCCEEEECCCChH-H-HHHHHHHHHHCCCeEEEEeC
Confidence 45555566555555543222 1 22345566778999987764
No 262
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=39.05 E-value=15 Score=22.26 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=20.6
Q ss_pred hHHhhHHHHHhcCCCCEEEeCCHhHHhhHhC
Q psy6265 27 EIMCHLPAVCEDKDIPYCYVPSKKDIGEALG 57 (91)
Q Consensus 27 ~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G 57 (91)
.+..++...+++++||++.-. .|.+++-
T Consensus 27 ~~A~~I~e~A~e~gVPi~e~~---~LAr~Ly 54 (93)
T 2vt1_B 27 QCALAVRKYANEVGIPTVRDV---KLARKLY 54 (93)
T ss_dssp HHHHHHHHHHHHTTCCEEECH---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEECH---HHHHHHH
Confidence 467789999999999997543 4444444
No 263
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=39.03 E-value=49 Score=23.73 Aligned_cols=25 Identities=12% Similarity=0.313 Sum_probs=16.9
Q ss_pred CCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 22 DVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 22 D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
+.+|.+ ...+..+.++++|+++++.
T Consensus 236 eps~~~-l~~l~~~ik~~~v~~If~e 260 (321)
T 1xvl_A 236 QFTPKQ-VQTVIEEVKTNNVPTIFCE 260 (321)
T ss_dssp SCCHHH-HHHHHHHHHTTTCSEEEEE
T ss_pred CCCHHH-HHHHHHHHHHcCCcEEEEe
Confidence 345544 3557788888888887754
No 264
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=39.01 E-value=27 Score=24.72 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=27.8
Q ss_pred HHHHHHHhC--CceEEEEeCCCCchhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQRK--TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~g--ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~ 45 (91)
+..+++... +.++|++.+-.....-...+.++|++++++++.
T Consensus 111 ~l~~~i~~~~~~~~~v~~~~~~G~~~~l~~i~~l~~~~~~~li~ 154 (394)
T 1o69_A 111 LLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIE 154 (394)
T ss_dssp HHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhcccCCceEEEEECCCCChhhHHHHHHHHHHcCCEEEE
Confidence 445666654 678888876332222346789999999997763
No 265
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=38.96 E-value=37 Score=23.28 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=25.8
Q ss_pred ceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 14 IMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 14 a~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
..+||-|.|. . .....+...|.++++|++...
T Consensus 119 ~DvVi~~~d~-~-~~r~~l~~~~~~~~~p~i~~~ 150 (251)
T 1zud_1 119 ADVVLDCTDN-M-ATRQEINAACVALNTPLITAS 150 (251)
T ss_dssp CSEEEECCSS-H-HHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEECCCC-H-HHHHHHHHHHHHhCCCEEEEe
Confidence 6788889884 4 346779999999999998754
No 266
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=38.95 E-value=52 Score=22.00 Aligned_cols=40 Identities=10% Similarity=-0.110 Sum_probs=21.9
Q ss_pred HHHHHhCCceEEEE-eCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 6 QGPLQRKTIMLCIF-AGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 6 ~kai~~gka~lVii-A~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.+...++.-+|+ ..|.+. . ......+.+.+||++.+.+
T Consensus 54 i~~l~~~~vdgiii~~~~~~~--~-~~~~~~~~~~giPvV~~~~ 94 (297)
T 3rot_A 54 IESALATYPSGIATTIPSDTA--F-SKSLQRANKLNIPVIAVDT 94 (297)
T ss_dssp HHHHHHTCCSEEEECCCCSST--T-HHHHHHHHHHTCCEEEESC
T ss_pred HHHHHHcCCCEEEEeCCCHHH--H-HHHHHHHHHCCCCEEEEcC
Confidence 34444444554444 444432 1 2344566788999987753
No 267
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=38.87 E-value=65 Score=21.97 Aligned_cols=40 Identities=13% Similarity=0.276 Sum_probs=26.6
Q ss_pred HHHHHHHhCC--ceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 4 TVQGPLQRKT--IMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 4 ev~kai~~gk--a~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
..+.+.++|+ +.++.+-+|- | + ..+..+|+++|||+..+.
T Consensus 18 ali~~~~~~~l~~eI~~Visn~-~-~--a~v~~~A~~~gIp~~~~~ 59 (211)
T 3p9x_A 18 AIIQSQKAGQLPCEVALLITDK-P-G--AKVVERVKVHEIPVCALD 59 (211)
T ss_dssp HHHHHHHTTCCSSEEEEEEESC-S-S--SHHHHHHHTTTCCEEECC
T ss_pred HHHHHHHcCCCCcEEEEEEECC-C-C--cHHHHHHHHcCCCEEEeC
Confidence 4566777776 4666666663 2 1 246678999999987654
No 268
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=38.73 E-value=23 Score=24.91 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=31.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
.+..+.+.+..+++++||-|+.. .+ -+..+-+..+||++-+
T Consensus 57 ~~~~~~L~~~g~~~IVIACNTa~-~~--al~~lr~~~~iPvigi 97 (269)
T 3ist_A 57 WEMTNFLVDRGIKMLVIACNTAT-AA--ALYDIREKLDIPVIGV 97 (269)
T ss_dssp HHHHHHHHHTTCSEEEECCHHHH-HH--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHCCCCEEEEeCCCcc-HH--HHHHHHHhcCCCEEee
Confidence 45677888888999999999744 21 2566667889999874
No 269
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=38.66 E-value=26 Score=26.92 Aligned_cols=50 Identities=16% Similarity=0.058 Sum_probs=30.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDI 52 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eL 52 (91)
.++...++.-.+-++++...-....-...+...|...++|++.+.+|.++
T Consensus 97 ~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl 146 (529)
T 2h5e_A 97 EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDR 146 (529)
T ss_dssp HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTS
T ss_pred HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCC
Confidence 34566666555555555443222223455777889999999887776654
No 270
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=38.45 E-value=73 Score=24.35 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=26.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHh
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKK 50 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~ 50 (91)
+..++.|.+-.+.+||++.|+++.. .+ ++..++|..+.-.++.
T Consensus 264 ~~~lekI~~~g~~vvi~~~~I~~~a--l~---~L~~~~I~~v~~v~k~ 306 (515)
T 3iyg_E 264 EEMIRQIKETGANLAVCQWGFDDEA--NH---LLLQNDLPAVRWVGGP 306 (515)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCHHH--HH---HHHHCCCEEEeccCHH
Confidence 3455666666689999999998732 22 3345666655543333
No 271
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=38.38 E-value=73 Score=20.03 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=37.3
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcC-------CCCEEE-eCCHhHHhhHhCCC-----CceEEEEEecC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDK-------DIPYCY-VPSKKDIGEALGRK-----KPCICVIVKST 70 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~-------~IP~~~-~~sk~eLG~a~G~~-----~~~~v~~i~~~ 70 (91)
+..+.++...+.+|.|+.|. +.. +..+++.+ ++++-. .....++.++.|.. ..-+..+++..
T Consensus 56 ~~~~~~~~~~v~vv~Is~d~-~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~ 130 (192)
T 2h01_A 56 KALDSFKERNVELLGCSVDS-KFT----HLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQ 130 (192)
T ss_dssp HTHHHHHHTTEEEEEEESSC-HHH----HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTT
T ss_pred HHHHHHHHCCCEEEEEEeCC-HHH----HHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCC
Confidence 44455555668899998883 422 34455555 666543 33456899999976 22335566543
No 272
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=38.36 E-value=77 Score=20.27 Aligned_cols=55 Identities=11% Similarity=-0.066 Sum_probs=32.1
Q ss_pred HHHHHHHh---CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe-CCH---hHHhhHhCCC
Q psy6265 4 TVQGPLQR---KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV-PSK---KDIGEALGRK 59 (91)
Q Consensus 4 ev~kai~~---gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~-~sk---~eLG~a~G~~ 59 (91)
+..+.+.. +.+.+|.|+-|-.. +....+..++++++.++..+ .+. .++.+..|..
T Consensus 66 ~l~~~~~~~~~~~v~vv~Is~D~~~-d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~ 127 (200)
T 2b7k_A 66 LWLNTLSSKYGITLQPLFITCDPAR-DSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVY 127 (200)
T ss_dssp HHHHHHHHHHCCCCEEEEEESCTTT-CCHHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhhCCceEEEEEECCCCC-CCHHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcE
Confidence 34444543 47889999988421 11234566778888876543 333 3566777764
No 273
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=38.32 E-value=34 Score=19.79 Aligned_cols=46 Identities=4% Similarity=-0.121 Sum_probs=25.3
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHh-cCCCCEEEeCC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCE-DKDIPYCYVPS 48 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~-~~~IP~~~~~s 48 (91)
.+....+++....+||+--+....+-...+..+.+ ..++|++.+.+
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 87 (137)
T 3hdg_A 41 EEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISA 87 (137)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCC
T ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEec
Confidence 45667777778888888765433222222222222 24677766543
No 274
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=38.26 E-value=27 Score=22.08 Aligned_cols=79 Identities=8% Similarity=0.029 Sum_probs=46.7
Q ss_pred HHHHHHHh-----CCceEEEEeCCCCch-hHHhhHHHHHhcCCCCEE--EeCCHhHHhhHhCCCCceEEEEEecCchHHH
Q psy6265 4 TVQGPLQR-----KTIMLCIFAGDVTPI-EIMCHLPAVCEDKDIPYC--YVPSKKDIGEALGRKKPCICVIVKSTESVAE 75 (91)
Q Consensus 4 ev~kai~~-----gka~lViiA~D~sp~-~~~~~l~~lc~~~~IP~~--~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~ 75 (91)
++.+.+++ ...++-++-+-+++. .....+...+++.++|+. .++....+.++.....+..- ........
T Consensus 116 ~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~~~l~~~~~~vl~~~Ip~~~~~~~a~~~g~~v~~---~~~s~~~~ 192 (206)
T 4dzz_A 116 GSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFE---SSDGAAKG 192 (206)
T ss_dssp HHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHHHHHHHHTCCBCSSCCBCCHHHHHHHHTTCCGGG---SSCHHHHH
T ss_pred HHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHHHHHHHcCCceeeccccccHHHHHHHHcCCCccc---CCchHHHH
Confidence 44555543 234556677776542 222345666777888876 56677788887765443322 44455667
Q ss_pred HHHHHHHHhh
Q psy6265 76 LYEEVKQEIG 85 (91)
Q Consensus 76 ~~~~~~~~~~ 85 (91)
+|..+.+++-
T Consensus 193 ~~~~la~~i~ 202 (206)
T 4dzz_A 193 EIEILTKEIV 202 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776653
No 275
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=38.22 E-value=63 Score=19.22 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=32.2
Q ss_pred hCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe----CCHhHHhhHhC--CCCceEEEEEecCc
Q psy6265 11 RKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV----PSKKDIGEALG--RKKPCICVIVKSTE 71 (91)
Q Consensus 11 ~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~----~sk~eLG~a~G--~~~~~~v~~i~~~~ 71 (91)
...+.++.|..|. + ..+..+++++++++-.. ....++.+..| ....=+..+++..|
T Consensus 55 ~~~v~vv~v~~d~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G 116 (151)
T 3raz_A 55 KGSVDMVGIALDT-S----DNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKC 116 (151)
T ss_dssp TTTEEEEEEESSC-H----HHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTT
T ss_pred cCCeEEEEEECCC-h----HHHHHHHHHcCCCCceEecCccchHHHHHHhCCccCCCCEEEEECCCC
Confidence 3446666676663 2 23556677788765322 24567888888 44333355665543
No 276
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=38.00 E-value=72 Score=19.85 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=37.1
Q ss_pred HHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEE--EeCCHhHHhhHhCCCCceEEEEEecC
Q psy6265 8 PLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYC--YVPSKKDIGEALGRKKPCICVIVKST 70 (91)
Q Consensus 8 ai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~--~~~sk~eLG~a~G~~~~~~v~~i~~~ 70 (91)
.+.+..+.++.|+-|-++. .+..+.+++++++. ......++.+..|....=...+++..
T Consensus 82 ~l~~~~v~vv~vs~~d~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~ 142 (176)
T 3kh7_A 82 RLAEQGVVIYGINYKDDNA----AAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQ 142 (176)
T ss_dssp HHHHTTCEEEEEEESCCHH----HHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTT
T ss_pred HHHHCCCEEEEEeCCCCHH----HHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCC
Confidence 3433357888887554442 34556678887763 45566789999998644445666554
No 277
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=37.91 E-value=45 Score=25.78 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=32.2
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHh---HHhhHhC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKK---DIGEALG 57 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~---eLG~a~G 57 (91)
+..++.|.+-.+.+||++.|+++.. .+ ++..++|..+.--.+. +|.+++|
T Consensus 274 ~~~le~I~~~g~~lvi~~~~I~~~a--l~---~L~~~~I~av~~~~k~~le~ia~~tG 326 (545)
T 1a6d_A 274 KQMVEKIKKSGANVVLCQKGIDDVA--QH---YLAKEGIYAVRRVKKSDMEKLAKATG 326 (545)
T ss_dssp HHHHHHHHHTTCCEEEESSCBCHHH--HH---HHHHHTCEEECSCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCEEEECCCccHHH--HH---HHHHCCeeEeccCCHHHHHHHHHHhC
Confidence 4566777777899999999998832 22 3345677666544544 3444444
No 278
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=37.89 E-value=78 Score=20.19 Aligned_cols=62 Identities=10% Similarity=-0.096 Sum_probs=36.2
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcC-------CCCEEE-eCCHhHHhhHhCCC------CceEEEEEec
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDK-------DIPYCY-VPSKKDIGEALGRK------KPCICVIVKS 69 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~-------~IP~~~-~~sk~eLG~a~G~~------~~~~v~~i~~ 69 (91)
+..+..+...+.+|.|+.|. +.. +..+++++ ++++-. .....++.+..|.. ..-+..+++.
T Consensus 61 ~l~~~~~~~~v~vi~Is~D~-~~~----~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~ 135 (202)
T 1uul_A 61 DRVKEFSDIGCEVLACSMDS-EYS----HLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDP 135 (202)
T ss_dssp HTHHHHHTTTEEEEEEESSC-HHH----HHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECT
T ss_pred HHHHHHHHCCCEEEEEeCCC-HHH----HHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECC
Confidence 34455555668888888883 322 34455554 555432 33456889999875 3333555554
Q ss_pred C
Q psy6265 70 T 70 (91)
Q Consensus 70 ~ 70 (91)
.
T Consensus 136 ~ 136 (202)
T 1uul_A 136 K 136 (202)
T ss_dssp T
T ss_pred C
Confidence 3
No 279
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=37.88 E-value=71 Score=21.24 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=21.3
Q ss_pred HHHHHhCCce-EEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 6 QGPLQRKTIM-LCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 6 ~kai~~gka~-lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.+..+++. +++...|.+. . ......+.+.+||++.+.+
T Consensus 54 i~~l~~~~vdgiIi~~~~~~~--~-~~~~~~~~~~~iPvV~~~~ 94 (305)
T 3g1w_A 54 LEQAIAKNPAGIAISAIDPVE--L-TDTINKAVDAGIPIVLFDS 94 (305)
T ss_dssp HHHHHHHCCSEEEECCSSTTT--T-HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHhCCCEEEEcCCCHHH--H-HHHHHHHHHCCCcEEEECC
Confidence 3344334444 4444445332 1 2344556778999987764
No 280
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=37.84 E-value=21 Score=25.31 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=30.6
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
.+..+.+++..+++++||-|+.. .. -+..+-+..+||++-+
T Consensus 76 ~~~~~~L~~~g~d~IVIACNTa~-~~--al~~lr~~~~iPvigi 116 (274)
T 3uhf_A 76 LEALDFFEQFQIDMLIIACNTAS-AY--ALDALRAKAHFPVYGV 116 (274)
T ss_dssp HHHHHHHTTSCCSEEEECCHHHH-HH--SHHHHHHHCSSCEECS
T ss_pred HHHHHHHHHCCCCEEEEeCCChh-HH--HHHHHHHhcCCCEEcC
Confidence 45667888888999999999744 22 2566667789999864
No 281
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=37.65 E-value=33 Score=23.40 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=41.1
Q ss_pred CceEEEEeCCCCchh--HHhhHHHHHhcCCCCEEEeC-----CHhHHhhHhCCCCc---eEEEEEecCchHHHHHHHHHH
Q psy6265 13 TIMLCIFAGDVTPIE--IMCHLPAVCEDKDIPYCYVP-----SKKDIGEALGRKKP---CICVIVKSTESVAELYEEVKQ 82 (91)
Q Consensus 13 ka~lViiA~D~sp~~--~~~~l~~lc~~~~IP~~~~~-----sk~eLG~a~G~~~~---~~v~~i~~~~~~~~~~~~~~~ 82 (91)
..+.||+-.|..+.+ -........++.+|.++.++ +.+.|-+..|.... .-+....+..+..+.++.|.+
T Consensus 125 ~~~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG~~~~~~~L~~iA~~~~~~g~~~~~~~~d~~~L~~i~~~l~~ 204 (266)
T 4hqo_A 125 AIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQGINHQFNRLIAGCRPREPNCKFYSYADWNEAVALIKPFIA 204 (266)
T ss_dssp SEEEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECSSSCCHHHHHHHHTCCTTCSSCTTEECSCHHHHHHHHHHHHC
T ss_pred CCeEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecCcccCHHHHHHhhCCCCCCCCCCeEEecCHHHHHHHHHHHHh
Confidence 457888888887642 22335556678899887543 45566777765411 122333444455555665554
Q ss_pred H
Q psy6265 83 E 83 (91)
Q Consensus 83 ~ 83 (91)
.
T Consensus 205 ~ 205 (266)
T 4hqo_A 205 K 205 (266)
T ss_dssp C
T ss_pred h
Confidence 4
No 282
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=37.47 E-value=50 Score=22.69 Aligned_cols=41 Identities=2% Similarity=-0.064 Sum_probs=25.1
Q ss_pred hHHHHHHHhCC--ceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRKT--IMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gk--a~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
..+++++.+++ ..++.+-+|- | + .....+|+++|||+..+.
T Consensus 37 ~~~l~~l~~~~~~~~I~~Vvt~~-~-~--~~~~~~A~~~gIp~~~~~ 79 (229)
T 3auf_A 37 QAILDGCREGRIPGRVAVVISDR-A-D--AYGLERARRAGVDALHMD 79 (229)
T ss_dssp HHHHHHHHTTSSSEEEEEEEESS-T-T--CHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHhCCCCCeEEEEEcCC-C-c--hHHHHHHHHcCCCEEEEC
Confidence 35677777773 4555555552 2 1 124578899999987643
No 283
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=37.47 E-value=31 Score=19.30 Aligned_cols=43 Identities=7% Similarity=-0.068 Sum_probs=18.7
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
+....+.++...++|+--+....+-...+..+.+..++|++.+
T Consensus 36 ~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~ 78 (121)
T 1zh2_A 36 RGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVL 78 (121)
T ss_dssp HHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEE
Confidence 3444455555666666443321111122222223445776654
No 284
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima}
Probab=37.46 E-value=19 Score=27.52 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=19.0
Q ss_pred CCCchhHHhhHHHHHhcCCCCEEE
Q psy6265 22 DVTPIEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 22 D~sp~~~~~~l~~lc~~~~IP~~~ 45 (91)
|+++ .+...+..+|++++||+=+
T Consensus 367 ~~~~-~~~~~~~~ia~~~~Ip~Q~ 389 (450)
T 2glf_A 367 DAHA-EFVARVRKVLNEQGVIWQV 389 (450)
T ss_dssp BCCH-HHHHHHHHHHHHTTCCEEE
T ss_pred cCCH-HHHHHHHHHHHHcCCCEEE
Confidence 4556 6788899999999999965
No 285
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=37.45 E-value=28 Score=19.86 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=26.7
Q ss_pred hHHHHHHHhCCceEEEEeCCCCch---hHHhhHHHHHhcCCCCEEEeCC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPI---EIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~---~~~~~l~~lc~~~~IP~~~~~s 48 (91)
.+....+++....+||+--+.... ++...+.......++|++.+.+
T Consensus 37 ~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 37 TDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp HHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEEC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEEC
Confidence 466777888888888887655332 2333332221245688776543
No 286
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=37.08 E-value=39 Score=24.47 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=30.6
Q ss_pred HHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 5 VQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+..+-.+....||++.+-.|.+ .+.+.|++++||+....
T Consensus 72 rler~l~~~~P~IIltrg~~~pe---elie~A~~~~IPVL~T~ 111 (314)
T 1ko7_A 72 RMRKLCRPETPAIIVTRDLEPPE---ELIEAAKEHETPLITSK 111 (314)
T ss_dssp HHHHHCCTTCCCEEECTTCCCCH---HHHHHHHHTTCCEEECC
T ss_pred HHHHHhcCCCCEEEEeCCCCCCH---HHHHHHHHCCCeEEEEC
Confidence 34455567888999999977633 47789999999998755
No 287
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=37.05 E-value=55 Score=21.51 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=27.2
Q ss_pred HHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhH
Q psy6265 7 GPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKD 51 (91)
Q Consensus 7 kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~e 51 (91)
+.++..++.+||+++|..+......+. +.++|+..+....|
T Consensus 49 ~~~~~~~~D~vi~~GDl~~~~~l~~l~----~~~~~v~~V~GNHD 89 (215)
T 2a22_A 49 ELLATDKINYVLCTGNVCSQEYVEMLK----NITKNVYIVSGDLD 89 (215)
T ss_dssp HHHHCTTCCEEEECSCCCCHHHHHHHH----HHCSCEEECCCTTC
T ss_pred HHHhcCCCCEEEECCCCCCHHHHHHHH----HcCCCEEEecCCCc
Confidence 334567799999999997644444333 34568877765544
No 288
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=36.95 E-value=55 Score=25.23 Aligned_cols=53 Identities=13% Similarity=0.345 Sum_probs=34.9
Q ss_pred HhhHHHHHhcCCCCEEEeCCH------hHHhhHhCCCCceEEEEEecCch-----HHHHHHHHHHHh
Q psy6265 29 MCHLPAVCEDKDIPYCYVPSK------KDIGEALGRKKPCICVIVKSTES-----VAELYEEVKQEI 84 (91)
Q Consensus 29 ~~~l~~lc~~~~IP~~~~~sk------~eLG~a~G~~~~~~v~~i~~~~~-----~~~~~~~~~~~~ 84 (91)
+..|.....++||-.+|+-|+ ++|...++. ++++.+..... ..++|++|...+
T Consensus 299 v~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~~ip~---s~vg~Ls~dSsNiv~LI~~aY~~i~S~V 362 (454)
T 3vi3_B 299 IAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPK---SAVGTLSANSSNVIQLIIDAYNSLSSEV 362 (454)
T ss_dssp HHHHHHHHHHTTEEEEEEEEGGGHHHHHHHHHHSTT---EEEEEECTTCTTHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHhcCCcEEEEEcCccchHHHHHHHhCCC---ceeeEccccchhHHHHHHHHHHHhheEE
Confidence 455666777888877775544 467777764 56777765443 267788887764
No 289
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=36.78 E-value=91 Score=20.64 Aligned_cols=40 Identities=8% Similarity=0.107 Sum_probs=23.4
Q ss_pred HHHHHHHhCCceEEEEeC-CCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 4 TVQGPLQRKTIMLCIFAG-DVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 4 ev~kai~~gka~lViiA~-D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
+..+.+.++++.-+|+.. +.++ . ....+.+.+||++.+.+
T Consensus 57 ~~~~~l~~~~vdgiIi~~~~~~~-~----~~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 57 PIRYILETGSADGVIISKIEPND-P----RVRFMTERNMPFVTHGR 97 (288)
T ss_dssp HHHHHHHHTCCSEEEEESCCTTC-H----HHHHHHHTTCCEEEESC
T ss_pred HHHHHHHcCCccEEEEecCCCCc-H----HHHHHhhCCCCEEEECC
Confidence 345556656665555553 3322 2 23455678999988764
No 290
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=36.75 E-value=83 Score=21.46 Aligned_cols=40 Identities=5% Similarity=-0.061 Sum_probs=24.2
Q ss_pred HHHHHHhCCceEEEEeC-CCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 5 VQGPLQRKTIMLCIFAG-DVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 5 v~kai~~gka~lViiA~-D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
.++.+...++.-+|+.. +.+. ..+..++++.+||++.+.+
T Consensus 111 ~~~~l~~~~vdgiIi~~~~~~~----~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 111 AIQYLLDLRCDAIMIYPRFLSV----DEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHTTCSEEEECCSSSCH----HHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHhCCCCEEEEeCCCCCh----HHHHHHHHcCCCCEEEEcC
Confidence 34555555655555544 3332 2356677889999987653
No 291
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=36.74 E-value=46 Score=24.09 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=29.7
Q ss_pred hHHHHHHHhCCceEEEEeCCCC-c----h-----hHHhhHHHHHhcCCCCEEEeCCHhH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVT-P----I-----EIMCHLPAVCEDKDIPYCYVPSKKD 51 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~s-p----~-----~~~~~l~~lc~~~~IP~~~~~sk~e 51 (91)
.+..+.++..++.+|++|+|.. . . .+...+..+.+. +|++.+....+
T Consensus 33 ~~l~~~~~~~~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~--~~v~~i~GNHD 89 (379)
T 3tho_B 33 DKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT--APVVVLPGNQD 89 (379)
T ss_dssp HHHHHHHHHHTCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH--SCEEECCCTTS
T ss_pred HHHHHHHHhcCCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC--CCEEEEcCCCc
Confidence 3455566778899999999986 2 1 122334444433 99988775543
No 292
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=36.71 E-value=72 Score=20.68 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=22.5
Q ss_pred HHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 5 VQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
..+.+..+++.-+|+...... . ......+.+.+||++.+.+
T Consensus 50 ~~~~l~~~~vdgiIi~~~~~~-~--~~~~~~~~~~~iPvV~~~~ 90 (272)
T 3o74_A 50 LQQLFRARRCDALFVASCLPP-E--DDSYRELQDKGLPVIAIDR 90 (272)
T ss_dssp HHHHHHHTTCSEEEECCCCCS-S--CCHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHcCCCEEEEecCccc-c--HHHHHHHHHcCCCEEEEcc
Confidence 445555555555555443211 1 2233456778999987764
No 293
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=36.48 E-value=52 Score=22.84 Aligned_cols=41 Identities=7% Similarity=0.114 Sum_probs=26.3
Q ss_pred HHHHHHHhCCceEEEEeCCCC------chhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVT------PIEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~s------p~~~~~~l~~lc~~~~IP~~~ 45 (91)
+..++++. +.++|++.+=-+ |.+-...+.++|+++++.++.
T Consensus 171 ~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 217 (407)
T 3nra_A 171 GLEEAFKA-GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIA 217 (407)
T ss_dssp HHHHHHHT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhh-CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 44556655 567777743222 223357789999999997763
No 294
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=36.37 E-value=98 Score=20.90 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=30.3
Q ss_pred HHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC---C-------HhHHhhHhCCC
Q psy6265 7 GPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP---S-------KKDIGEALGRK 59 (91)
Q Consensus 7 kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~---s-------k~eLG~a~G~~ 59 (91)
..|..-+--|||......+......+ ++.+||++.+. + -..||+++|++
T Consensus 53 E~i~~l~PDLIi~~~~~~~~~~~~~L----~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (283)
T 2r79_A 53 EGVLALRPDILIGTEEMGPPPVLKQL----EGAGVRVETLSAKPDLEALESNLKKLGDWLGVP 111 (283)
T ss_dssp HHHHTTCCSEEEECTTCCCHHHHHHH----HHTTCCEEECCCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCCCEEEEeCccCcHHHHHHH----HHcCCcEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 34555566777765543332333333 56889998763 2 23789999976
No 295
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=36.31 E-value=83 Score=21.32 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=34.6
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC--CHhH-HhhHhCCCC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP--SKKD-IGEALGRKK 60 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~--sk~e-LG~a~G~~~ 60 (91)
...+.+++|+--.++..+|-.-......+...+.+.+|++..++ |... .-..+|.+-
T Consensus 88 ~i~~~~~~g~~Va~l~~GDP~~~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~G~pl 147 (259)
T 2e0n_A 88 SMAEEVQAGRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMTPGIPAFIAAGSAAGMPL 147 (259)
T ss_dssp HHHHHHHTTCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEECCCCHHHHHHHHTTCCS
T ss_pred HHHHHHHCCCeEEEEeCCCCcccccHHHHHHHHHHCCCCEEEeCChhHHHHHHHhcCCCC
Confidence 34455667764444445564433334566778888899998776 4443 445666653
No 296
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=36.22 E-value=27 Score=25.63 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=19.9
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCch
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPI 26 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~ 26 (91)
++++.+.+++.++..|+||.|..+.
T Consensus 292 ~~~i~~~~~~~~~~~VyiATD~~~~ 316 (408)
T 4ap5_A 292 VRKIRSLMKTHRLDKVFVATDAVRK 316 (408)
T ss_dssp HHHHHHHHHHHTCSCEEEEECCCHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCchh
Confidence 4566777788889999999998763
No 297
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=35.92 E-value=47 Score=24.56 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=31.5
Q ss_pred HHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHh
Q psy6265 5 VQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIG 53 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG 53 (91)
..++++.-.+-++++-..-+..+....+..+..+.++|++.+.+|-+|-
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 319 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 3445666665555554333222344567777788999999999988863
No 298
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=35.77 E-value=58 Score=19.21 Aligned_cols=45 Identities=4% Similarity=-0.096 Sum_probs=25.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHh-cCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCE-DKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~-~~~IP~~~~~ 47 (91)
.+....++++...+||+--+....+-...+..+.+ ..++|++.+.
T Consensus 41 ~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls 86 (153)
T 3cz5_A 41 GEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFT 86 (153)
T ss_dssp HHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEE
Confidence 45667778888888888655432222222222222 2468876654
No 299
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=35.76 E-value=83 Score=19.89 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=33.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcC----CCCEEE-eCCHhHHhhHhCCC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDK----DIPYCY-VPSKKDIGEALGRK 59 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~----~IP~~~-~~sk~eLG~a~G~~ 59 (91)
++..+.++...+.+|.|+.|. +.. +..+++++ ++++-. .....++.++.|..
T Consensus 54 ~~~~~~~~~~~v~vv~Is~d~-~~~----~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~ 110 (186)
T 1n8j_A 54 ADHYEELQKLGVDVYSVSTDT-HFT----HKAWHSSSETIAKIKYAMIGDPTGALTRNFDNM 110 (186)
T ss_dssp HHHHHHHHHTTEEEEEEESSC-HHH----HHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCE
T ss_pred HHHHHHHHHCCCEEEEEECCC-HHH----HHHHHHHcCcccCCceeEEECCchHHHHHhCCc
Confidence 344455566678999999884 422 34566777 776533 34566888988875
No 300
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=35.75 E-value=64 Score=21.89 Aligned_cols=40 Identities=15% Similarity=-0.022 Sum_probs=24.8
Q ss_pred HHHHHHHhCC--ceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 4 TVQGPLQRKT--IMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 4 ev~kai~~gk--a~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
..+++++.|. +.++.+-+|- | +. .-..+|+++|||+..+.
T Consensus 23 all~~~~~~~l~~~I~~Visn~-~-~a--~~l~~A~~~gIp~~~~~ 64 (209)
T 4ds3_A 23 ALIRAAQAPGFPAEIVAVFSDK-A-EA--GGLAKAEAAGIATQVFK 64 (209)
T ss_dssp HHHHHHTSTTCSEEEEEEEESC-T-TC--THHHHHHHTTCCEEECC
T ss_pred HHHHHHHcCCCCcEEEEEEECC-c-cc--HHHHHHHHcCCCEEEeC
Confidence 4566777765 5666666653 2 11 12467888899987654
No 301
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}
Probab=35.65 E-value=23 Score=27.77 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=22.5
Q ss_pred eEEEEeCCC-------Cc--hhHHhhHHHHHhcCCCCEEEe
Q psy6265 15 MLCIFAGDV-------TP--IEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 15 ~lViiA~D~-------sp--~~~~~~l~~lc~~~~IP~~~~ 46 (91)
...|||+|- +| .....++..+|++.+||++++
T Consensus 339 ~Vgvian~~~~~~G~l~~~~a~Kaarfi~lcd~~~iPlv~l 379 (531)
T 3n6r_B 339 TVGVVANQPLVLAGCLDIDSSRKAARFVRFCDAFEIPLLTL 379 (531)
T ss_dssp EEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEecccccCCCCCHHHHHHHHHHHHHhhccCCCEEEE
Confidence 356788882 12 134567889999999999863
No 302
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=35.47 E-value=65 Score=23.03 Aligned_cols=43 Identities=7% Similarity=0.139 Sum_probs=28.9
Q ss_pred HHHHHHHh---CCceEEEEeCCCC-------chhHHhhHHHHHhcCCCCEEEe
Q psy6265 4 TVQGPLQR---KTIMLCIFAGDVT-------PIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 4 ev~kai~~---gka~lViiA~D~s-------p~~~~~~l~~lc~~~~IP~~~~ 46 (91)
+..++|.. ++.++|++..=.. +.+-...+.++|+++|++++.-
T Consensus 171 ~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 223 (467)
T 2oqx_A 171 GLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMD 223 (467)
T ss_dssp HHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 44556654 4678888853221 2234577999999999998764
No 303
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=35.44 E-value=50 Score=25.56 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=32.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHh---HHhhHhC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKK---DIGEALG 57 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~---eLG~a~G 57 (91)
++.++.|.+-.+.+||++.|+++. ..+ ++..++|-.+.--.+. +|.+++|
T Consensus 277 ~~~le~I~~~g~~lvi~~~~I~~~--al~---~L~~~~I~av~~~~k~~le~ia~~tG 329 (548)
T 1q3q_A 277 KDMVDHIAQTGANVVFVQKGIDDL--AQH---YLAKYGIMAVRRVKKSDMEKLAKATG 329 (548)
T ss_dssp HHHHHHHHHHTCCEEEESSCBCHH--HHH---HHHHTTCEEECSCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCEEEEcCCcCHH--HHH---HHHHCCcEEEccCCHHHHHHHHHHhC
Confidence 455666766678999999999873 222 3456778766555554 3444444
No 304
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=35.30 E-value=42 Score=20.16 Aligned_cols=75 Identities=9% Similarity=0.114 Sum_probs=35.2
Q ss_pred hHHHHHHHhC--CceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeCC---HhHHhhHhCCCCceEEEEEecCchHH
Q psy6265 3 STVQGPLQRK--TIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVPS---KKDIGEALGRKKPCICVIVKSTESVA 74 (91)
Q Consensus 3 kev~kai~~g--ka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~s---k~eLG~a~G~~~~~~v~~i~~~~~~~ 74 (91)
.+.+..+++. ...+||+--+... .++...+... ..++|++.+.+ ....-++.... +..++..+-+.+
T Consensus 71 ~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~--~~~~~ii~ls~~~~~~~~~~~~~~g---~~~~l~KP~~~~ 145 (157)
T 3hzh_A 71 EEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEF--DKNARVIMISALGKEQLVKDCLIKG---AKTFIVKPLDRA 145 (157)
T ss_dssp HHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHH--CTTCCEEEEESCCCHHHHHHHHHTT---CSEEEESSCCHH
T ss_pred HHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhh--CCCCcEEEEeccCcHHHHHHHHHcC---CCEEEeCCCCHH
Confidence 3556666666 6677777654432 2333333322 24677765443 33333333211 233444554544
Q ss_pred HHHHHHHH
Q psy6265 75 ELYEEVKQ 82 (91)
Q Consensus 75 ~~~~~~~~ 82 (91)
+..+.|..
T Consensus 146 ~l~~~i~~ 153 (157)
T 3hzh_A 146 KVLQRVMS 153 (157)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 305
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=35.15 E-value=75 Score=19.17 Aligned_cols=62 Identities=13% Similarity=0.250 Sum_probs=40.8
Q ss_pred EEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhC---CC-CceEEEEEecCchHHHHHHHHHHH
Q psy6265 16 LCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALG---RK-KPCICVIVKSTESVAELYEEVKQE 83 (91)
Q Consensus 16 lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G---~~-~~~~v~~i~~~~~~~~~~~~~~~~ 83 (91)
.+||++|- .+...-..+++..|..+..+.|-.+|-+.+- +. ...-+.++..+.+ ++|+..+.
T Consensus 5 vliisndk---klieearkmaekanlelrtvktedelkkyleefrkesqnikvlilvsnde---eldkakel 70 (110)
T 2kpo_A 5 VLIISNDK---KLIEEARKMAEKANLELRTVKTEDELKKYLEEFRKESQNIKVLILVSNDE---ELDKAKEL 70 (110)
T ss_dssp EEEECSCH---HHHHHHHHHHHHHTCEEEECCSHHHHHHHHHHHTSSTTSEEEEEEESSHH---HHHHHHHH
T ss_pred EEEEcCcH---HHHHHHHHHHHhcCceeeeeccHHHHHHHHHHHHhhccCeEEEEEEcChH---HHHHHHHH
Confidence 35666663 4566677889999999999999999987764 32 3344555555544 34444443
No 306
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=35.06 E-value=56 Score=21.64 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=22.3
Q ss_pred HHHHHHhCCceEEEE-eCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 5 VQGPLQRKTIMLCIF-AGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 5 v~kai~~gka~lVii-A~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
..+.+..+++.-+|+ ..+... .....+.+.+||++.+.+
T Consensus 56 ~~~~l~~~~vdgiIi~~~~~~~-----~~~~~~~~~~iPvV~~~~ 95 (291)
T 3egc_A 56 AVGQFFERRVDGLILAPSEGEH-----DYLRTELPKTFPIVAVNR 95 (291)
T ss_dssp HHHHHHHTTCSEEEECCCSSCC-----HHHHHSSCTTSCEEEESS
T ss_pred HHHHHHHCCCCEEEEeCCCCCh-----HHHHHhhccCCCEEEEec
Confidence 445555555555554 444322 233456788999987764
No 307
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=35.05 E-value=98 Score=20.50 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=37.9
Q ss_pred HHHHHHHhCCceEEEEeCCCC-------chhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVT-------PIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALG 57 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~s-------p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G 57 (91)
|..+..+.-+-.++++=.|.+ |..+...+..+|-..++++++..|.++-++.+.
T Consensus 71 Q~~~l~~~~~~~~lliE~d~~~~~~~~~~~~i~~~l~~~~~~~~~~vi~t~s~~eta~~l~ 131 (219)
T 2bgw_A 71 QASRLAEHYETVFIIVEGPPVPRRYRGRERSLYAAMAALQLDYGIRLMNTMDPKGTALVIE 131 (219)
T ss_dssp HHHHHHHHCSEEEEEEESCSSCGGGTTTHHHHHHHHHHHHHHSCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEEecCccccccCCHHHHHHHHHHHHHHCCceEEEcCCHHHHHHHHH
Confidence 333344444455666666653 557778888899899999999999988776554
No 308
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=35.03 E-value=60 Score=23.01 Aligned_cols=43 Identities=5% Similarity=0.257 Sum_probs=29.4
Q ss_pred hHHHHHHHhCCceEEEEeCCCCch------hHHhhHHHHHhcCCCCEEE
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPI------EIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~------~~~~~l~~lc~~~~IP~~~ 45 (91)
.+..+++.+.+.++|++.+=-+|. +-...+.++|+++++.++.
T Consensus 184 ~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~ 232 (421)
T 3l8a_A 184 EQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVS 232 (421)
T ss_dssp HHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 345666766788888885432221 2356789999999998774
No 309
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=34.99 E-value=72 Score=22.66 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=26.6
Q ss_pred HHHHHHHh-----CCceEEEEeCCCC------chhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQR-----KTIMLCIFAGDVT------PIEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~-----gka~lViiA~D~s------p~~~~~~l~~lc~~~~IP~~~ 45 (91)
+..+++++ .+.++|++.+=.+ +.+-...+.++|+++++.++.
T Consensus 177 ~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 229 (435)
T 3piu_A 177 ALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLIS 229 (435)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 34455544 3678888763222 223356788999999997763
No 310
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=34.96 E-value=51 Score=18.69 Aligned_cols=19 Identities=11% Similarity=-0.078 Sum_probs=11.3
Q ss_pred HHHHHHHhCCceEEEEeCC
Q psy6265 4 TVQGPLQRKTIMLCIFAGD 22 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D 22 (91)
+....++++...+||+--+
T Consensus 42 ~a~~~~~~~~~dlvl~D~~ 60 (129)
T 1p6q_A 42 QGMKIMAQNPHHLVISDFN 60 (129)
T ss_dssp HHHHHHHTSCCSEEEECSS
T ss_pred HHHHHHHcCCCCEEEEeCC
Confidence 4555566666667766443
No 311
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=34.91 E-value=43 Score=20.79 Aligned_cols=68 Identities=12% Similarity=0.011 Sum_probs=39.6
Q ss_pred CceEEEEeCCCCchhHH----hhHHHHHhcCCCCEEEeC----CHhHHhhHhCCCCceEEEEEec-CchHHHHHHHHHH
Q psy6265 13 TIMLCIFAGDVTPIEIM----CHLPAVCEDKDIPYCYVP----SKKDIGEALGRKKPCICVIVKS-TESVAELYEEVKQ 82 (91)
Q Consensus 13 ka~lViiA~D~sp~~~~----~~l~~lc~~~~IP~~~~~----sk~eLG~a~G~~~~~~v~~i~~-~~~~~~~~~~~~~ 82 (91)
..+.+|+-.|..+..-. ......+++.+|+++.++ +..+|-+..+.. .-+-.+.+ ..+..+.++.|.+
T Consensus 106 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~L~~iA~~~--~~~~~~~~~~~~L~~~~~~i~~ 182 (185)
T 3n2n_F 106 TASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVKDFNETQLARIADSK--DHVFPVNDGFQALQGIIHSILK 182 (185)
T ss_dssp EEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECSSCCHHHHTTTSSSG--GGEEEHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEeccCCHHHHHHHhCCC--CCeEEeccHHHHHHHHHHHHHH
Confidence 35788888888663222 345667788899886654 567887777643 22222332 3444455555544
No 312
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=34.90 E-value=42 Score=20.33 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=25.4
Q ss_pred HHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEE-EeCCHhH
Q psy6265 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYC-YVPSKKD 51 (91)
Q Consensus 9 i~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~-~~~sk~e 51 (91)
+++....+++|.++... .+...+..+-++.-.|.+ .++|+..
T Consensus 49 ~~~~digIIlIte~ia~-~i~~~i~~~~~~~~~P~IieIPs~~g 91 (102)
T 2i4r_A 49 LKRDDVGVVIMKQEYLK-KLPPVLRREIDEKVEPTFVSVGGTGG 91 (102)
T ss_dssp HHCSSEEEEEEEGGGST-TSCHHHHTTTTTCCSSEEEEEC----
T ss_pred hhCCCeEEEEEeHHHHH-HHHHHHHHHHhCCCccEEEEECCCCC
Confidence 35557899999988876 555545545455578864 5777764
No 313
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=34.85 E-value=34 Score=20.99 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=26.3
Q ss_pred CceEEEEeCCCCch--hHHhhHHHHHhcCCCCEEEeCCHhHH
Q psy6265 13 TIMLCIFAGDVTPI--EIMCHLPAVCEDKDIPYCYVPSKKDI 52 (91)
Q Consensus 13 ka~lViiA~D~sp~--~~~~~l~~lc~~~~IP~~~~~sk~eL 52 (91)
.+.+|++.-|++.. .....+..+....++|++.+.+|.+|
T Consensus 104 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 145 (195)
T 3pqc_A 104 SLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK 145 (195)
T ss_dssp TEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhc
Confidence 34566666564421 22334566777889999999998876
No 314
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=34.82 E-value=98 Score=20.42 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=30.8
Q ss_pred HHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC----C-------HhHHhhHhCCCC
Q psy6265 7 GPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP----S-------KKDIGEALGRKK 60 (91)
Q Consensus 7 kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~----s-------k~eLG~a~G~~~ 60 (91)
..|..-+--|||......+.+....+ ++.+||++.+. + -..||+++|++.
T Consensus 53 E~i~~l~PDLIi~~~~~~~~~~~~~L----~~~gipvv~~~~~~~~~~~~~~~i~~lg~~~g~~~ 113 (256)
T 2r7a_A 53 EGILSLRPDSVITWQDAGPQIVLDQL----RAQKVNVVTLPRVPATLEQMYANIRQLAKTLQVPE 113 (256)
T ss_dssp HHHHTTCCSEEEEETTCSCHHHHHHH----HHTTCEEEEECCCSCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHccCCCEEEEcCCCCCHHHHHHH----HHcCCcEEEecCCCCCHHHHHHHHHHHHHHhCCHH
Confidence 34555566788776543332333433 57889987763 2 236899999763
No 315
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=34.56 E-value=1.1e+02 Score=20.78 Aligned_cols=72 Identities=11% Similarity=0.031 Sum_probs=44.4
Q ss_pred CceEEEEeCCCCchh--HHhhHHHHHhcCCCCEEEeC-----CHhHHhhHhCCCCc---eEEEEEecCchHHHHHHHHHH
Q psy6265 13 TIMLCIFAGDVTPIE--IMCHLPAVCEDKDIPYCYVP-----SKKDIGEALGRKKP---CICVIVKSTESVAELYEEVKQ 82 (91)
Q Consensus 13 ka~lViiA~D~sp~~--~~~~l~~lc~~~~IP~~~~~-----sk~eLG~a~G~~~~---~~v~~i~~~~~~~~~~~~~~~ 82 (91)
..+.|||-.|..+.+ -........+..+|.++.++ +.+.|-...|.... .-+....+..+..+.++.+..
T Consensus 128 ~~~~iillTDG~~~d~~~~~~~~~~l~~~gv~i~~igiG~~~~~~~L~~iA~~~~~~g~~~~~~~~~~~~L~~~~~~l~~ 207 (281)
T 4hqf_A 128 ANQLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVGCHPSDGKCNLYADSAWENVKNVIGPFMK 207 (281)
T ss_dssp CEEEEEEEESSCCSCHHHHHHHHHHHHHTTCEEEEEEESSSCCHHHHHHHTTSCSSSSCCTTEEEECGGGHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCCcHHHHHHHHHHHHCCCEEEEEeCCCccCHHHHHhhhCCCCCCCCCceEEecchhhhhcccCCccc
Confidence 467888888886642 22334455668899886543 46678888776421 134555666666666666655
Q ss_pred Hh
Q psy6265 83 EI 84 (91)
Q Consensus 83 ~~ 84 (91)
.+
T Consensus 208 ~i 209 (281)
T 4hqf_A 208 AV 209 (281)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 316
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=34.46 E-value=59 Score=23.28 Aligned_cols=43 Identities=5% Similarity=0.080 Sum_probs=28.6
Q ss_pred HHHHHHHh---CCceEEEEeCCCCc-------hhHHhhHHHHHhcCCCCEEEe
Q psy6265 4 TVQGPLQR---KTIMLCIFAGDVTP-------IEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 4 ev~kai~~---gka~lViiA~D~sp-------~~~~~~l~~lc~~~~IP~~~~ 46 (91)
+..++|.. ++.++|++..=.+| .+-...|.++|+++|++++.-
T Consensus 171 ~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~D 223 (467)
T 1ax4_A 171 KLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMD 223 (467)
T ss_dssp HHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEE
Confidence 44556654 36888888542212 234567999999999998754
No 317
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=34.29 E-value=64 Score=20.92 Aligned_cols=43 Identities=14% Similarity=0.324 Sum_probs=30.8
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCC-CEEEeCC--HhHHhhHhCCC
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDI-PYCYVPS--KKDIGEALGRK 59 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~I-P~~~~~s--k~eLG~a~G~~ 59 (91)
..+.+|.|+.|. +. .+..+++++++ ++-.+.+ ..+++++.|..
T Consensus 109 ~~v~vv~Is~D~-~~----~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~ 154 (200)
T 3zrd_A 109 ENTVVLCISSDL-PF----AQSRFCGAEGLSNVITLSTLRGADFKQAYGVA 154 (200)
T ss_dssp TTEEEEEEESSC-HH----HHTTCTTTTTCTTEEEEETTSCTHHHHHTTCE
T ss_pred CCCEEEEEECCC-HH----HHHHHHHHcCCCCceEEecCchHHHHHHhCce
Confidence 358888888883 42 24567888999 8866554 47899998874
No 318
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=34.23 E-value=92 Score=20.75 Aligned_cols=40 Identities=10% Similarity=0.195 Sum_probs=24.1
Q ss_pred HHHHHHHhCCceEEEEeC-CCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 4 TVQGPLQRKTIMLCIFAG-DVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 4 ev~kai~~gka~lViiA~-D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
+..+.+..+++.-+|+.. +.++ . +...+.+.+||++.+.+
T Consensus 59 ~~~~~l~~~~vdGiI~~~~~~~~-~----~~~~l~~~~iPvV~i~~ 99 (295)
T 3hcw_A 59 EVYKMIKQRMVDAFILLYSKEND-P----IKQMLIDESMPFIVIGK 99 (295)
T ss_dssp HHHHHHHTTCCSEEEESCCCTTC-H----HHHHHHHTTCCEEEESC
T ss_pred HHHHHHHhCCcCEEEEcCcccCh-H----HHHHHHhCCCCEEEECC
Confidence 345666666666666653 3322 2 33455678999988764
No 319
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=34.22 E-value=39 Score=23.67 Aligned_cols=40 Identities=3% Similarity=-0.070 Sum_probs=30.2
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
.+..+.+++..+++++||-|+... -+..+-+..+||++-+
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~----~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY----WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG----GHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH----HHHHHHHHCCCCEEcc
Confidence 455677888889999999998542 3556667789999764
No 320
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=34.17 E-value=31 Score=24.03 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=26.9
Q ss_pred HHHHHHHhCCceEEEEe-CCCCchhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQRKTIMLCIFA-GDVTPIEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~gka~lViiA-~D~sp~~~~~~l~~lc~~~~IP~~~ 45 (91)
+..+++...+.++|++. .+.+...-...|.++|++++++++.
T Consensus 154 ~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~ 196 (405)
T 2vi8_A 154 DVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMV 196 (405)
T ss_dssp HHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEE
Confidence 45566665456788874 2222211146789999999998764
No 321
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=34.03 E-value=58 Score=21.95 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=20.6
Q ss_pred HHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 8 PLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 8 ai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
.+.++--.+++...|. + . .......+.+.+||++.+.+
T Consensus 55 ~~~~~vdgiIi~~~~~-~-~-~~~~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 55 MVTKGVKVLVIASIDG-T-T-LSDVLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp HHHHTCSEEEECCSSG-G-G-GHHHHHHHHHTTCEEEEESS
T ss_pred HHHcCCCEEEEEcCCc-h-h-HHHHHHHHHHCCCCEEEECC
Confidence 3444434444444442 2 2 23345567788999987653
No 322
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=33.65 E-value=87 Score=20.68 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=41.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCH---hHHhhHhCCCCceEEEEEecCchHHHHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSK---KDIGEALGRKKPCICVIVKSTESVAELYEE 79 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk---~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~ 79 (91)
.+.+..+......+||+--+....+-...+..+-+..++|++.+.+. +..-+++. ..+..++..+-+.++....
T Consensus 71 ~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~~~~~~~~a~~---~Ga~~yl~Kp~~~~~L~~~ 147 (249)
T 3q9s_A 71 MNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARDTVEEKVRLLG---LGADDYLIKPFHPDELLAR 147 (249)
T ss_dssp HHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHH---HTCSEEEESSCCHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHH---CCCcEEEECCCCHHHHHHH
Confidence 35566777778888888766543232333333334457887765432 33333332 1233455555554555554
Q ss_pred HHHHh
Q psy6265 80 VKQEI 84 (91)
Q Consensus 80 ~~~~~ 84 (91)
|...+
T Consensus 148 i~~~l 152 (249)
T 3q9s_A 148 VKVQL 152 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 323
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=33.58 E-value=25 Score=21.98 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=10.8
Q ss_pred CCCCEEEeCCHhHHhh
Q psy6265 39 KDIPYCYVPSKKDIGE 54 (91)
Q Consensus 39 ~~IP~~~~~sk~eLG~ 54 (91)
.++|++.+.+|.+|-.
T Consensus 131 ~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 131 RPLRAVLVANKTDLPP 146 (208)
T ss_dssp SCCEEEEEEECC----
T ss_pred cCCcEEEEEECcccch
Confidence 6899999999988754
No 324
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=33.57 E-value=1e+02 Score=20.33 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=22.9
Q ss_pred HHHHHHhCCceEEEEeC-CCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 5 VQGPLQRKTIMLCIFAG-DVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 5 v~kai~~gka~lViiA~-D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
.++.+...++.-+|+.. |.+ .. ......+.+.+||++.+.+
T Consensus 51 ~~~~~~~~~vdgiii~~~~~~--~~-~~~~~~~~~~~iPvV~~~~ 92 (309)
T 2fvy_A 51 QIDVLLAKGVKALAINLVDPA--AA-GTVIEKARGQNVPVVFFNK 92 (309)
T ss_dssp HHHHHHHTTCSEEEECCSSGG--GH-HHHHHHHHTTTCCEEEESS
T ss_pred HHHHHHHcCCCEEEEeCCCcc--hh-HHHHHHHHHCCCcEEEecC
Confidence 34555556666555544 322 11 2234455678999987664
No 325
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=33.54 E-value=34 Score=21.18 Aligned_cols=75 Identities=13% Similarity=-0.001 Sum_probs=39.4
Q ss_pred ceEEEEeCCCCch----hHHhhHHHHHh---cCCCCEEEeCCHhHHhh---------HhCC----CCceEEEEE--ecCc
Q psy6265 14 IMLCIFAGDVTPI----EIMCHLPAVCE---DKDIPYCYVPSKKDIGE---------ALGR----KKPCICVIV--KSTE 71 (91)
Q Consensus 14 a~lViiA~D~sp~----~~~~~l~~lc~---~~~IP~~~~~sk~eLG~---------a~G~----~~~~~v~~i--~~~~ 71 (91)
+..+++--|++.. .....+..+.+ ..++|++.+.+|.+|-. .++. .....+.-+ ..+.
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (187)
T 1zj6_A 84 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGE 163 (187)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence 4445554454321 23333444444 36899999998877643 2321 111222222 2345
Q ss_pred hHHHHHHHHHHHhhcCC
Q psy6265 72 SVAELYEEVKQEIGALP 88 (91)
Q Consensus 72 ~~~~~~~~~~~~~~~~~ 88 (91)
...+.++.|.+.+...+
T Consensus 164 gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 164 GLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp THHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 66888888888876554
No 326
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=33.52 E-value=87 Score=20.93 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=24.1
Q ss_pred HHHHHHHhCCceEEEEeC-CCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 4 TVQGPLQRKTIMLCIFAG-DVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 4 ev~kai~~gka~lViiA~-D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
+..+.+..+++.-+|+.. +.++ . ....+.+.+||++.+.+
T Consensus 74 ~~~~~l~~~~vdgiIi~~~~~~~-~----~~~~l~~~~iPvV~i~~ 114 (305)
T 3huu_A 74 EVKTMIQSKSVDGFILLYSLKDD-P----IEHLLNEFKVPYLIVGK 114 (305)
T ss_dssp HHHHHHHTTCCSEEEESSCBTTC-H----HHHHHHHTTCCEEEESC
T ss_pred HHHHHHHhCCCCEEEEeCCcCCc-H----HHHHHHHcCCCEEEECC
Confidence 345566666666555553 4333 2 33455678999998764
No 327
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=33.37 E-value=82 Score=19.29 Aligned_cols=43 Identities=16% Similarity=0.324 Sum_probs=29.6
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCC-CEEEeCC--HhHHhhHhCCC
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDI-PYCYVPS--KKDIGEALGRK 59 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~I-P~~~~~s--k~eLG~a~G~~ 59 (91)
..+.+|.|+.|. +. .+..+++++++ ++-.+.+ ..++.++.|..
T Consensus 74 ~~v~vv~Is~d~-~~----~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~ 119 (165)
T 1q98_A 74 SNTIVLCISADL-PF----AQARFCGAEGIENAKTVSTFRNHALHSQLGVD 119 (165)
T ss_dssp TTEEEEEEESSC-HH----HHTTCTTTTTCTTEEEEECTTCTHHHHHTTCE
T ss_pred CCCEEEEEeCCC-HH----HHHHHHHHcCCCceEEeeccccchHHHHhCce
Confidence 458888888874 42 24456788888 6755444 46888888864
No 328
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=33.25 E-value=61 Score=18.59 Aligned_cols=51 Identities=2% Similarity=0.061 Sum_probs=27.4
Q ss_pred HHHHHHhCCceEEEEe-----CCCCchhHHhhHHHHHhcCCCCEEEeC--C----HhHHhhHhCCC
Q psy6265 5 VQGPLQRKTIMLCIFA-----GDVTPIEIMCHLPAVCEDKDIPYCYVP--S----KKDIGEALGRK 59 (91)
Q Consensus 5 v~kai~~gka~lViiA-----~D~sp~~~~~~l~~lc~~~~IP~~~~~--s----k~eLG~a~G~~ 59 (91)
+.+.+..+++ .||.. ..|.+- ..+..+.++++|+|..+. . +++|-+..|..
T Consensus 10 ~~~~i~~~~v-vvf~~g~~~~~~C~~C---~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~ 71 (105)
T 2yan_A 10 LKVLTNKASV-MLFMKGNKQEAKCGFS---KQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWP 71 (105)
T ss_dssp HHHHHTSSSE-EEEESBCSSSBCTTHH---HHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCC
T ss_pred HHHHhccCCE-EEEEecCCCCCCCccH---HHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCC
Confidence 3444555542 33444 667542 345556677889986544 2 22465566753
No 329
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=33.16 E-value=37 Score=23.81 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=16.9
Q ss_pred hhHHHHHhcC--CCCEEEeCCHhHHh
Q psy6265 30 CHLPAVCEDK--DIPYCYVPSKKDIG 53 (91)
Q Consensus 30 ~~l~~lc~~~--~IP~~~~~sk~eLG 53 (91)
..+....++. ++|++.+.+|.+|-
T Consensus 105 ~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 105 ELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp HHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred HHHHHHHHhhcCCCCEEEEEECcccC
Confidence 3444555666 89999998887763
No 330
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=33.14 E-value=68 Score=22.12 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=43.4
Q ss_pred HHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCC-----------CceEEEEEecCchHHHH
Q psy6265 8 PLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRK-----------KPCICVIVKSTESVAEL 76 (91)
Q Consensus 8 ai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~-----------~~~~v~~i~~~~~~~~~ 76 (91)
.+..+.+.++++--|++..+-...+.....+.++|++.+.+|.+|-..-+.. .+..-..-..+....+.
T Consensus 75 ~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 75 YLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV 154 (272)
T ss_dssp HHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred HHhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence 3444567777777777643322233334455799999998888775433321 11111111234456777
Q ss_pred HHHHHHHhh
Q psy6265 77 YEEVKQEIG 85 (91)
Q Consensus 77 ~~~~~~~~~ 85 (91)
|+.+.+.++
T Consensus 155 ~~~i~~~~~ 163 (272)
T 3b1v_A 155 VKKAAHTTT 163 (272)
T ss_dssp HHHHHHSCT
T ss_pred HHHHHHHHh
Confidence 777776654
No 331
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=33.08 E-value=1.1e+02 Score=20.31 Aligned_cols=50 Identities=14% Similarity=0.068 Sum_probs=31.7
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcC-------CCCEEE-eCCHhHHhhHhCC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDK-------DIPYCY-VPSKKDIGEALGR 58 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~-------~IP~~~-~~sk~eLG~a~G~ 58 (91)
+..+.++...+.+|.|+.|. +.. +..+++++ ++++-. .....++.++.|.
T Consensus 81 ~l~~~~~~~~v~vv~Is~D~-~~~----~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv 138 (221)
T 2c0d_A 81 KHIKDFENKNVELLGISVDS-VYS----HLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNV 138 (221)
T ss_dssp HTHHHHHHTTEEEEEEESSC-HHH----HHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTC
T ss_pred HHHHHHHHCCCEEEEEeCCC-HHH----HHHHHHHhhhhcCccCCceEEEECCchHHHHHcCC
Confidence 44455565678999999884 422 34455665 565533 3445688899887
No 332
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=33.08 E-value=95 Score=22.44 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=27.3
Q ss_pred hHHHHHHHhCCceEEEEeCCCC--chhHHhhHHHHHhcCCC-CEEEeCCHhHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVT--PIEIMCHLPAVCEDKDI-PYCYVPSKKDI 52 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~s--p~~~~~~l~~lc~~~~I-P~~~~~sk~eL 52 (91)
+.+...+..-.+-+++++.+-. ......|+ .+++..++ |++.+.+|.+|
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~-~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 90 ATMLSGAALMDGAILVVAANEPFPQPQTREHF-VALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp HHHHHHHTTCSEEEEEEETTSCSSCHHHHHHH-HHHHHHTCCCEEEEEECGGG
T ss_pred HHHHHHHhhCCEEEEEEECCCCCCcHHHHHHH-HHHHHcCCCCEEEEEECccc
Confidence 3445555554555555554432 22444554 46666666 78888777665
No 333
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=32.91 E-value=72 Score=21.52 Aligned_cols=41 Identities=2% Similarity=-0.103 Sum_probs=26.3
Q ss_pred hHHHHHHHhCC--ceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRKT--IMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gk--a~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
...++++++|+ ..++.+-+|-.. ......|+++|||+..+.
T Consensus 15 ~ali~~~~~~~~~~~i~~Vis~~~~----~~~~~~A~~~gIp~~~~~ 57 (212)
T 1jkx_A 15 QAIIDACKTNKIKGTVRAVFSNKAD----AFGLERARQAGIATHTLI 57 (212)
T ss_dssp HHHHHHHHTTSSSSEEEEEEESCTT----CHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHcCCCCceEEEEEeCCCc----hHHHHHHHHcCCcEEEeC
Confidence 34667777885 455555555322 124678999999998754
No 334
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=32.85 E-value=15 Score=22.53 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=17.4
Q ss_pred hHHhhHHHHHhcCCCCEEEeC
Q psy6265 27 EIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 27 ~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+..++...+++++||++.-.
T Consensus 27 ~~A~~I~e~A~e~gVPi~e~~ 47 (98)
T 3c01_E 27 QRALAVRAYAEKVGVPVIVDI 47 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEECH
T ss_pred HHHHHHHHHHHHcCCCeecCH
Confidence 467789999999999997543
No 335
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=32.81 E-value=48 Score=25.17 Aligned_cols=41 Identities=24% Similarity=0.513 Sum_probs=24.6
Q ss_pred hHHHHHHHhC--CceEEEEeC--CCC---chhHHhhHHHHHhcCCCCEE
Q psy6265 3 STVQGPLQRK--TIMLCIFAG--DVT---PIEIMCHLPAVCEDKDIPYC 44 (91)
Q Consensus 3 kev~kai~~g--ka~lViiA~--D~s---p~~~~~~l~~lc~~~~IP~~ 44 (91)
..+.++|++. +...+|+++ ... ..++ ..+.++|+++|||+.
T Consensus 185 ~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl-~~Ia~ia~~~gi~l~ 232 (450)
T 3bc8_A 185 KAVEAKIQELGPEHILCLHSTTACFAPRVPDRL-EELAVICANYDIPHV 232 (450)
T ss_dssp HHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCH-HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHhcCCCCEEEEEEECCcCCCceecCH-HHHHHHHHHCCCeEE
Confidence 3556677552 244555543 221 1133 568899999999986
No 336
>3by5_A Cobalamin biosynthesis protein; structural genomics, unknown function; 2.52A {Agrobacterium tumefaciens str} SCOP: c.151.1.1
Probab=32.74 E-value=43 Score=21.94 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=17.8
Q ss_pred hHHHHHhcCCCCEEEeCCHhHHhh
Q psy6265 31 HLPAVCEDKDIPYCYVPSKKDIGE 54 (91)
Q Consensus 31 ~l~~lc~~~~IP~~~~~sk~eLG~ 54 (91)
-|.++|++.++|+.++ +.++|..
T Consensus 55 gL~e~A~~lgvPl~~~-~~eeL~~ 77 (155)
T 3by5_A 55 GLAEAAKGLSLSLEIV-AQERLEA 77 (155)
T ss_dssp HHHHHHHHTTCCEEEC-CHHHHHH
T ss_pred HHHHHHHHhCCCeEEE-CHHHHhh
Confidence 4788999999999874 6666654
No 337
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=32.73 E-value=86 Score=22.13 Aligned_cols=40 Identities=8% Similarity=0.094 Sum_probs=26.5
Q ss_pred HHHHHHh-----CCceEEEEeCCC------CchhHHhhHHHHHhcCCCCEE
Q psy6265 5 VQGPLQR-----KTIMLCIFAGDV------TPIEIMCHLPAVCEDKDIPYC 44 (91)
Q Consensus 5 v~kai~~-----gka~lViiA~D~------sp~~~~~~l~~lc~~~~IP~~ 44 (91)
..++++. .+.++|++.+=- -|.+....+.++|++++++++
T Consensus 175 l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li 225 (428)
T 1iay_A 175 VKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLV 225 (428)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEE
Confidence 4455543 368888886421 232446778999999999876
No 338
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=32.54 E-value=84 Score=18.96 Aligned_cols=59 Identities=8% Similarity=0.138 Sum_probs=30.1
Q ss_pred HHHHHHhCCceEEEEeC------CCCchhHHhhHHHHHhcCCCC---EEE--eCC----HhHHhhHhCCCCceEEEEEec
Q psy6265 5 VQGPLQRKTIMLCIFAG------DVTPIEIMCHLPAVCEDKDIP---YCY--VPS----KKDIGEALGRKKPCICVIVKS 69 (91)
Q Consensus 5 v~kai~~gka~lViiA~------D~sp~~~~~~l~~lc~~~~IP---~~~--~~s----k~eLG~a~G~~~~~~v~~i~~ 69 (91)
+.+.|++++ +++... .| |. =.+...+-++++|| |.. +.. +++|.+..|.. ..-..+++.
T Consensus 9 v~~~i~~~~--Vvvfsk~t~~~p~C-p~--C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~-tvP~vfI~g 82 (121)
T 3gx8_A 9 IEDAIESAP--VVLFMKGTPEFPKC-GF--SRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWP-TIPQLYVNK 82 (121)
T ss_dssp HHHHHHSCS--EEEEESBCSSSBCT-TH--HHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCC-SSCEEEETT
T ss_pred HHHHhccCC--EEEEEeccCCCCCC-cc--HHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCC-CCCeEEECC
Confidence 334444443 555555 46 42 23455666788999 643 332 34566656644 222445543
No 339
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=32.54 E-value=48 Score=22.77 Aligned_cols=43 Identities=7% Similarity=0.018 Sum_probs=27.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc------hhHHhhHHHHHhcC--CCCEEE
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP------IEIMCHLPAVCEDK--DIPYCY 45 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp------~~~~~~l~~lc~~~--~IP~~~ 45 (91)
.+..+++...+.++|++.+=-+| .+-...+.++|+++ ++.++.
T Consensus 147 ~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~ 197 (367)
T 3euc_A 147 GAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVV 197 (367)
T ss_dssp HHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEE
T ss_pred HHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEE
Confidence 34556676657888888532222 12356788899999 887764
No 340
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=32.47 E-value=92 Score=19.43 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=29.2
Q ss_pred hHHHHHHHhCC---------ceEEEEeC-CCCc-----------------hhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 3 STVQGPLQRKT---------IMLCIFAG-DVTP-----------------IEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 3 kev~kai~~gk---------a~lViiA~-D~sp-----------------~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.++.+++.. ++++++.- ...+ ..+-..+..+|++++++++...+
T Consensus 112 ~~li~~~~~~~~~~~~~~P~~~iil~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~ 184 (216)
T 2q0q_A 112 SVLVTQVLTSAGGVGTTYPAPKVLVVSPPPLAPMPHPWFQLIFEGGEQKTTELARVYSALASFMKVPFFDAGS 184 (216)
T ss_dssp HHHHHHHHTCTTTTTBCCCCCEEEEEECCCCCCCCSHHHHHHTTTHHHHHTTHHHHHHHHHHHHTCCEEEGGG
T ss_pred HHHHHHHHHhcccccccCCCCeEEEEeCCCcCcccCCcchhhhccHHHHHHHHHHHHHHHHHHcCCcEEchhH
Confidence 45566676654 88888753 2221 02344577889999999986643
No 341
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=32.47 E-value=69 Score=18.38 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=23.1
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHh-cCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCE-DKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~-~~~IP~~~~~ 47 (91)
.+.+..++.+...+||+--+....+-...+..+.+ ..++|++.+.
T Consensus 37 ~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (132)
T 3crn_A 37 GEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVT 82 (132)
T ss_dssp HHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEe
Confidence 35566677777788877644422111122222222 3467776653
No 342
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=32.46 E-value=61 Score=23.09 Aligned_cols=34 Identities=15% Similarity=0.416 Sum_probs=24.2
Q ss_pred ceEEEEeCCCC-------c--hhHHhhHHHHHhcCCCCEEEeC
Q psy6265 14 IMLCIFAGDVT-------P--IEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 14 a~lViiA~D~s-------p--~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
-..+++|.|.. + .+...++.++|.+.++|++++-
T Consensus 121 ~~V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~lPlI~l~ 163 (285)
T 2f9i_B 121 MKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFS 163 (285)
T ss_dssp EEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEEEEccccccCcCCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 35678888843 1 1335668899999999998654
No 343
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=32.36 E-value=22 Score=21.01 Aligned_cols=29 Identities=14% Similarity=-0.013 Sum_probs=23.7
Q ss_pred eEEEEeCCCCchhHHhhHHHHHhcCCCCE
Q psy6265 15 MLCIFAGDVTPIEIMCHLPAVCEDKDIPY 43 (91)
Q Consensus 15 ~lViiA~D~sp~~~~~~l~~lc~~~~IP~ 43 (91)
.+++|+-|++...-..++...|+.++..+
T Consensus 4 M~~lV~YDI~~~kr~~kv~k~l~~yg~rv 32 (90)
T 1zpw_X 4 RLYAVAYDIPDDTRRVKLANLLKSYGERV 32 (90)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHTTEEEE
T ss_pred eEEEEEEeCCChHHHHHHHHHHHHhCccc
Confidence 47999999976566788999999999653
No 344
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=32.27 E-value=98 Score=21.30 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=34.2
Q ss_pred HHHHHHHhCCceEEEE-eCC---------CCchhH---HhhHHHHHhcCCCCEEEeCCHhHHhhHhCC
Q psy6265 4 TVQGPLQRKTIMLCIF-AGD---------VTPIEI---MCHLPAVCEDKDIPYCYVPSKKDIGEALGR 58 (91)
Q Consensus 4 ev~kai~~gka~lVii-A~D---------~sp~~~---~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~ 58 (91)
.+.++++.| +.+|.+ ..| .++.++ ...+..+|+.+++|++. .+..+|-.++|-
T Consensus 48 ~~~~al~~G-v~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liI-nd~~~lA~~~gA 113 (243)
T 3o63_A 48 FAEAALAGG-VDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAV-NDRADIARAAGA 113 (243)
T ss_dssp HHHHHHHTT-CSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEE-ESCHHHHHHHTC
T ss_pred HHHHHHHCC-CCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEE-eCHHHHHHHhCC
Confidence 455666666 666666 556 334333 36688999999998654 456666666664
No 345
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=32.24 E-value=67 Score=24.25 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=18.4
Q ss_pred hHHHHHHHhCCceEEEEeCCCC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVT 24 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~s 24 (91)
.++++.+++.++.+|++++|..
T Consensus 61 ~~ll~~~~~~~~D~VliaGDlf 82 (431)
T 3t1i_A 61 DEILRLAQENEVDFILLGGDLF 82 (431)
T ss_dssp HHHHHHHHHTTCSEEEECSCCB
T ss_pred HHHHHHHhhcCCCEEEEcCccc
Confidence 4567777888999999999984
No 346
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=32.23 E-value=55 Score=25.93 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=32.8
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHh
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIG 53 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG 53 (91)
..++..+++.-..-++++...-....-...+...+..+++|++.+.+|.++-
T Consensus 91 ~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 142 (691)
T 1dar_A 91 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT 142 (691)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTST
T ss_pred HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcc
Confidence 3567778877666666655433221122345567888999999888776553
No 347
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=32.17 E-value=79 Score=18.57 Aligned_cols=74 Identities=9% Similarity=0.142 Sum_probs=36.1
Q ss_pred hCCceEEEEeCCCC---chhHHhhHHHHHhcCCCCEEEeCC---HhHHhhHhCCCCceEEEEEecCc---hHHHHHHHHH
Q psy6265 11 RKTIMLCIFAGDVT---PIEIMCHLPAVCEDKDIPYCYVPS---KKDIGEALGRKKPCICVIVKSTE---SVAELYEEVK 81 (91)
Q Consensus 11 ~gka~lViiA~D~s---p~~~~~~l~~lc~~~~IP~~~~~s---k~eLG~a~G~~~~~~v~~i~~~~---~~~~~~~~~~ 81 (91)
+....+||+--+.. ..++...+.......++|++.+.+ ....-++.... +..++..+- ++...++.+.
T Consensus 57 ~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g---~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLG---ANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp TTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTT---CSEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCC---CcEEEeCCCCHHHHHHHHHHHH
Confidence 56678888865443 223444443332346789876543 33333443321 233444443 3344555555
Q ss_pred HHhhcC
Q psy6265 82 QEIGAL 87 (91)
Q Consensus 82 ~~~~~~ 87 (91)
.....+
T Consensus 134 ~~~~~~ 139 (152)
T 3heb_A 134 LFFSVM 139 (152)
T ss_dssp HHHTTS
T ss_pred HHHHHc
Confidence 444443
No 348
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=32.16 E-value=97 Score=20.77 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=21.4
Q ss_pred HHHHHhCCceEEEEe-CCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 6 QGPLQRKTIMLCIFA-GDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 6 ~kai~~gka~lViiA-~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.+...++.-+|+. .|. + ... .....+.+.+||++.+.+
T Consensus 50 i~~l~~~~vdgiIi~~~~~-~-~~~-~~~~~~~~~~iPvV~~~~ 90 (313)
T 2h3h_A 50 LESFIAEGVNGIAIAPSDP-T-AVI-PTIKKALEMGIPVVTLDT 90 (313)
T ss_dssp HHHHHHTTCSEEEECCSST-T-TTH-HHHHHHHHTTCCEEEESS
T ss_pred HHHHHHcCCCEEEEeCCCh-H-HHH-HHHHHHHHCCCeEEEeCC
Confidence 344444556555554 443 2 222 233455678999987653
No 349
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=32.10 E-value=1.3e+02 Score=20.97 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=46.3
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCC-EEEeCCHhHHhhHhCC-CCceEEEEE
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIP-YCYVPSKKDIGEALGR-KKPCICVIV 67 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP-~~~~~sk~eLG~a~G~-~~~~~v~~i 67 (91)
|+..+..-|---.+++++-.++.+ ...+...|++.|.. ++.+.|.+|+-+|.-. .. -.+++.
T Consensus 115 qi~ea~~~GAD~ilLi~a~l~~~~-l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~g~-~iIGin 178 (251)
T 1i4n_A 115 QVKLASSVGADAILIIARILTAEQ-IKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRP-KIIGIN 178 (251)
T ss_dssp HHHHHHHTTCSEEEEEGGGSCHHH-HHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCC-SEEEEE
T ss_pred HHHHHHHcCCCEEEEecccCCHHH-HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCC-CEEEEe
Confidence 666777788877888888777644 46688999999985 5779999999999876 43 234444
No 350
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=32.08 E-value=91 Score=19.21 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=30.5
Q ss_pred HHHHHHHhCCc------eEEEEeCCC-CchhHHhhHHHHHhcCCCCEE-EeCCHhHHhhHhC
Q psy6265 4 TVQGPLQRKTI------MLCIFAGDV-TPIEIMCHLPAVCEDKDIPYC-YVPSKKDIGEALG 57 (91)
Q Consensus 4 ev~kai~~gka------~lViiA~D~-sp~~~~~~l~~lc~~~~IP~~-~~~sk~eLG~a~G 57 (91)
+..+.+....+ .++.|..|- ++ ..+..+++++++++- ......++.+..|
T Consensus 83 ~l~~~~~~~~~~~~~~v~~v~v~~d~~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 140 (183)
T 3lwa_A 83 IIHEELQAAGNGDTPGGTVLGINVRDYSR----DIAQDFVTDNGLDYPSIYDPPFMTAASLG 140 (183)
T ss_dssp HHHHHHHHCC---CCSEEEEEEECSCCCH----HHHHHHHHHTTCCSCEEECTTCGGGGGTT
T ss_pred HHHHHHHhcCCCccCCcEEEEEECCCCCH----HHHHHHHHHcCCCccEEECCcchHHHHhc
Confidence 34444544445 778787775 34 235567788888763 3456667777776
No 351
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=32.06 E-value=83 Score=24.15 Aligned_cols=43 Identities=12% Similarity=-0.064 Sum_probs=30.6
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
.++.+.|.+-+--++++..-+ .......+..+++..++|++..
T Consensus 234 ~~~~~~l~~A~rPvIl~G~g~-~~~a~~~l~~lae~~~~PV~~t 276 (604)
T 2x7j_A 234 SDVAEMLAEAEKGMIVCGELH-SDADKENIIALSKALQYPILAD 276 (604)
T ss_dssp HHHHHHHHHCSSEEEEECCCC-CHHHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHhhcCCeEEEECCCC-cHHHHHHHHHHHHhcCceEEEc
Confidence 456677777766566555555 3345577999999999999854
No 352
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=32.05 E-value=85 Score=18.88 Aligned_cols=64 Identities=3% Similarity=-0.085 Sum_probs=35.8
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHh--HHhhHhCCCCceEEEEEecCc
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKK--DIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~--eLG~a~G~~~~~~v~~i~~~~ 71 (91)
+..+......+.++.|..|..+. . +.......+.|+..-.+.. ++.+..|....=+..+++..|
T Consensus 59 ~l~~~~~~~~~~vv~i~~d~~~~-~---~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G 124 (152)
T 2lrt_A 59 ELYNKYASQGFEIYQISLDGDEH-F---WKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNN 124 (152)
T ss_dssp HHHHHHGGGTEEEEEEECSCCHH-H---HHHHHTTCSSEEEECSSGGGCHHHHHHTCCSCSEEEEEETTT
T ss_pred HHHHHhccCCeEEEEEEccCCHH-H---HHHHHhCCCceEEECCCCcchHHHHHcCcccCceEEEECCCC
Confidence 33444444457777777776552 2 2233344555554433332 488999986554566676544
No 353
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=31.99 E-value=62 Score=19.22 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=24.3
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCH
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSK 49 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk 49 (91)
..+.+|+.+.+... . ...+...|..+++|++.+...
T Consensus 50 ~~~D~Ii~t~~l~~-~-~~~~~~~~~~~~~pv~~I~~~ 85 (109)
T 2l2q_A 50 DRFDVVLLAPQSRF-N-KKRLEEITKPKGIPIEIINTI 85 (109)
T ss_dssp TTCSEEEECSCCSS-H-HHHHHHHHHHHTCCEEECCHH
T ss_pred CCCCEEEECCccHH-H-HHHHHHHhcccCCCEEEEChH
Confidence 45778888888755 3 456777777778887665543
No 354
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=31.93 E-value=56 Score=18.85 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=36.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeC---CHhHHhhHhCCCCceEEEEEecCchHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVP---SKKDIGEALGRKKPCICVIVKSTESVAEL 76 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~---sk~eLG~a~G~~~~~~v~~i~~~~~~~~~ 76 (91)
.+....++++...+||+--+... .++...+.. ...++|++.+. +....-++.. ..+...+..+-+.++.
T Consensus 39 ~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~--~~~~~~ii~ls~~~~~~~~~~~~~---~ga~~~l~Kp~~~~~L 113 (133)
T 3b2n_A 39 LDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRK--KHLNIKVIIVTTFKRPGYFEKAVV---NDVDAYVLKERSIEEL 113 (133)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHH--TTCSCEEEEEESCCCHHHHHHHHH---TTCSEEEETTSCHHHH
T ss_pred HHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHH--HCCCCcEEEEecCCCHHHHHHHHH---cCCcEEEECCCCHHHH
Confidence 35566666777777777544322 123333322 13467776653 3334444443 1234455555554444
Q ss_pred HHHHHH
Q psy6265 77 YEEVKQ 82 (91)
Q Consensus 77 ~~~~~~ 82 (91)
...+..
T Consensus 114 ~~~i~~ 119 (133)
T 3b2n_A 114 VETINK 119 (133)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 355
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=31.88 E-value=76 Score=18.30 Aligned_cols=44 Identities=7% Similarity=0.068 Sum_probs=24.9
Q ss_pred hHHHHHHH--hCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 3 STVQGPLQ--RKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 3 kev~kai~--~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
.+....+. +....+||+--+... .++...+.. ...++|++.+.+
T Consensus 37 ~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~--~~~~~~ii~ls~ 85 (143)
T 3jte_A 37 TEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKK--ITPHMAVIILTG 85 (143)
T ss_dssp HHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHH--HCTTCEEEEEEC
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHH--hCCCCeEEEEEC
Confidence 35566666 567888888765532 233333332 134688776554
No 356
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=31.85 E-value=62 Score=22.16 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=26.7
Q ss_pred HHHHHHHhCCceEEEEeCCCCc------hhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTP------IEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp------~~~~~~l~~lc~~~~IP~~~ 45 (91)
+..+++ +.+.++|++.+=-+| .+-...+.++|++++++++.
T Consensus 148 ~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 194 (383)
T 3kax_A 148 HLEKQF-QQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVA 194 (383)
T ss_dssp HHHHHH-TTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHh-CcCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEE
Confidence 445556 567888888542222 13356688889999998764
No 357
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=31.82 E-value=42 Score=25.99 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=27.2
Q ss_pred CceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 13 TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 13 ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
+..+||.|.|- . .....+...|..++||++...+
T Consensus 124 ~~DvVi~~~d~-~-~~r~~ln~~c~~~~iplI~~~~ 157 (531)
T 1tt5_A 124 RFTVVVATQLP-E-STSLRLADVLWNSQIPLLICRT 157 (531)
T ss_dssp GCSEEEEESCC-H-HHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEeCCC-H-HHHHHHHHHHHHcCCCEEEEEe
Confidence 36789999884 4 4567899999999999998744
No 358
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=31.80 E-value=61 Score=21.36 Aligned_cols=52 Identities=6% Similarity=-0.019 Sum_probs=32.5
Q ss_pred HHHHHHhCCceEEEE-eCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCC
Q psy6265 5 VQGPLQRKTIMLCIF-AGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGR 58 (91)
Q Consensus 5 v~kai~~gka~lVii-A~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~ 58 (91)
+..+++.| +.+|-+ ..+.++.++...+..+|+.++++++. .+..++-..+|-
T Consensus 19 ~~~a~~~G-v~~v~lr~k~~~~~~~~~~i~~l~~~~~~~liv-nd~~~~A~~~ga 71 (210)
T 3ceu_A 19 ITALFEEG-LDILHLRKPETPAMYSERLLTLIPEKYHRRIVT-HEHFYLKEEFNL 71 (210)
T ss_dssp HHHHHHTT-CCEEEECCSSCCHHHHHHHHHHSCGGGGGGEEE-SSCTTHHHHTTC
T ss_pred HHHHHHCC-CCEEEEccCCCCHHHHHHHHHHHHHHhCCeEEE-eCCHHHHHHcCC
Confidence 44555666 444444 45566656667778889888888754 455566666653
No 359
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=31.79 E-value=1e+02 Score=20.31 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=21.4
Q ss_pred HHHHHhCCceEEEEe-CCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 6 QGPLQRKTIMLCIFA-GDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 6 ~kai~~gka~lViiA-~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.+..+++.-+|+. .|.+. .. .....+.+.+||++.+.+
T Consensus 50 i~~l~~~~vdgiIi~~~~~~~--~~-~~~~~~~~~~iPvV~~~~ 90 (283)
T 2ioy_A 50 VEDLIQQKVDVLLINPVDSDA--VV-TAIKEANSKNIPVITIDR 90 (283)
T ss_dssp HHHHHHTTCSEEEECCSSTTT--TH-HHHHHHHHTTCCEEEESS
T ss_pred HHHHHHcCCCEEEEeCCchhh--hH-HHHHHHHHCCCeEEEecC
Confidence 344445556555554 34322 11 233456778999987653
No 360
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=31.76 E-value=41 Score=19.23 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=22.5
Q ss_pred HHHHHHHhCCceEEEEeCCCCch---hHHhhHHHHHhcCCCCEEEeC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPI---EIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~---~~~~~l~~lc~~~~IP~~~~~ 47 (91)
+....+++....+||+--+.... ++...+.. ...++|++.+.
T Consensus 37 ~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~--~~~~~~ii~~s 81 (134)
T 3f6c_A 37 SAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRK--RQYSGIIIIVS 81 (134)
T ss_dssp THHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHH--TTCCSEEEEEE
T ss_pred HHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHh--cCCCCeEEEEe
Confidence 45566667777777777554322 23333322 12357776544
No 361
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=31.72 E-value=52 Score=18.73 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=23.9
Q ss_pred hHHHHHHHhCCceEEEEeCCCC---chhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVT---PIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~s---p~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+....+++....+||+--+.. ..++...+.. ...++|++.+.
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~--~~~~~~ii~~t 86 (130)
T 3eod_A 41 VDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRN--RGDQTPVLVIS 86 (130)
T ss_dssp HHHHHHHTTCCCSEEEECCC-----CHHHHHHHHH--TTCCCCEEEEE
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHh--cCCCCCEEEEE
Confidence 4566777778888888865442 2233333332 23467876554
No 362
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Probab=31.70 E-value=29 Score=27.15 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=22.7
Q ss_pred eEEEEeCCCC-------c--hhHHhhHHHHHhcCCCCEEEe
Q psy6265 15 MLCIFAGDVT-------P--IEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 15 ~lViiA~D~s-------p--~~~~~~l~~lc~~~~IP~~~~ 46 (91)
...|||+|-. | .....++..+|++.++|++++
T Consensus 333 ~Vgvian~~~~~~G~l~~~~a~Kaarfi~~c~~~~iPlv~l 373 (530)
T 3iav_A 333 PVGIVANQPMQFAGCLDITASEKAARFVRTCDAFNVPVLTF 373 (530)
T ss_dssp EEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEecCcccCCCCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 3567888831 2 134567899999999999863
No 363
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=31.57 E-value=50 Score=21.64 Aligned_cols=19 Identities=32% Similarity=0.209 Sum_probs=13.7
Q ss_pred HhCCceEEEEeCCCCchhHH
Q psy6265 10 QRKTIMLCIFAGDVTPIEIM 29 (91)
Q Consensus 10 ~~gka~lViiA~D~sp~~~~ 29 (91)
+.| -.|+|||+|++...+.
T Consensus 51 ~~~-~pLlIIAedvegeaLa 69 (145)
T 1srv_A 51 QTG-KPLLIIAEDVEGEALA 69 (145)
T ss_dssp TTT-CCEEEEESEECHHHHH
T ss_pred HHC-CCEEEEecccchhhhh
Confidence 455 4799999999875443
No 364
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=31.36 E-value=63 Score=24.97 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=31.8
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHh---HHhhHhC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKK---DIGEALG 57 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~---eLG~a~G 57 (91)
++.++.|.+-.+.+||++.|+++. ..+ ++.+++|-.+..-.+. +|.+++|
T Consensus 270 ~~~ve~I~~~g~~vvi~~~~I~~~--al~---~L~~~gI~~v~~v~k~~le~ia~~tG 322 (543)
T 3ruv_A 270 KDMVAEIKASGANVLFCQKGIDDL--AQH---YLAKEGIVAARRVKKSDMEKLAKATG 322 (543)
T ss_dssp HHHHHHHHHHTCSEEEESSCBCHH--HHH---HHHHTTCEEECSCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEeCCccHH--HHH---HHHHcCcEEEeeCCHHHHHHHHHHhC
Confidence 344556666668999999999883 223 2346888776544544 4455555
No 365
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=31.23 E-value=55 Score=24.86 Aligned_cols=45 Identities=2% Similarity=0.116 Sum_probs=30.3
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.++.+.|.+.+--++++..-+........+..+++..++|++...
T Consensus 200 ~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~~t~ 244 (566)
T 2vbi_A 200 DATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCAVTIMA 244 (566)
T ss_dssp HHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEG
T ss_pred HHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhCCCEEEcc
Confidence 455667777765565555554322345678999999999998544
No 366
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=31.21 E-value=54 Score=23.79 Aligned_cols=41 Identities=12% Similarity=0.052 Sum_probs=27.0
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCE
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPY 43 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~ 43 (91)
+.+.++.+++....++|+.++.+. +.......+.+..+||+
T Consensus 34 a~~~l~~l~~~g~~~~~vTNn~~~-~~~~~~~~l~~~lgi~~ 74 (352)
T 3kc2_A 34 ASDALKLLNRNKIPYILLTNGGGF-SERARTEFISSKLDVDV 74 (352)
T ss_dssp HHHHHHHHHHTTCCEEEECSCCSS-CHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCC-CchHHHHHHHHhcCCCC
Confidence 356788898888999999998753 12233334444566764
No 367
>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum}
Probab=31.10 E-value=29 Score=26.45 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=18.9
Q ss_pred CCCchhHHhhHHHHHhcCCCCEEE
Q psy6265 22 DVTPIEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 22 D~sp~~~~~~l~~lc~~~~IP~~~ 45 (91)
|+++ .+...+..+|++++||+=.
T Consensus 379 ~~~~-~~~~~l~~ia~~~~Ip~Q~ 401 (461)
T 2glj_A 379 DANP-EYIAELRRILSKESVNWQT 401 (461)
T ss_dssp CCCH-HHHHHHHHHHHHTCCCEEE
T ss_pred cCCH-HHHHHHHHHHHHcCCCeEE
Confidence 3455 6788999999999999965
No 368
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=31.07 E-value=43 Score=23.73 Aligned_cols=36 Identities=3% Similarity=-0.004 Sum_probs=27.1
Q ss_pred CceEEEEeCCCCchhHHhhHHHHHhcC---CCCEEEeCCHh
Q psy6265 13 TIMLCIFAGDVTPIEIMCHLPAVCEDK---DIPYCYVPSKK 50 (91)
Q Consensus 13 ka~lViiA~D~sp~~~~~~l~~lc~~~---~IP~~~~~sk~ 50 (91)
.+.+||.|.|- + .+-..+...|+++ +||+..+.+.+
T Consensus 106 ~adlViaat~d-~-~~n~~I~~~Ar~~f~~~i~VNvvd~pe 144 (274)
T 1kyq_A 106 AWYIIMTCIPD-H-PESARIYHLCKERFGKQQLVNVADKPD 144 (274)
T ss_dssp CEEEEEECCSC-H-HHHHHHHHHHHHHHCTTSEEEETTCGG
T ss_pred CeEEEEEcCCC-h-HHHHHHHHHHHHhcCCCcEEEECCCcc
Confidence 57889999884 4 3456789999999 99886665543
No 369
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=30.98 E-value=66 Score=22.42 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=26.9
Q ss_pred HHHHHHHhCCceEEEE-eC--C----CCchhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQRKTIMLCIF-AG--D----VTPIEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~gka~lVii-A~--D----~sp~~~~~~l~~lc~~~~IP~~~ 45 (91)
+..+++++.+.++|++ .+ + +-+.+....+.++|+++++.++.
T Consensus 153 ~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 201 (397)
T 2zyj_A 153 ALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVE 201 (397)
T ss_dssp HHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4556676656788754 33 1 11223455789999999998873
No 370
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=30.94 E-value=54 Score=23.03 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=38.7
Q ss_pred ceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCch
Q psy6265 14 IMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTES 72 (91)
Q Consensus 14 a~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~ 72 (91)
.+..++..|.........+..+++..++|+....+..+|..++..-...-+.++|.+|-
T Consensus 135 ~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~dlvIiDT~G~ 193 (296)
T 2px0_A 135 KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYDHVFVDTAGR 193 (296)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSSEEEEECCCC
T ss_pred CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 46778888875444555677788888898765556566655554323345778887653
No 371
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=30.90 E-value=61 Score=18.49 Aligned_cols=45 Identities=4% Similarity=-0.020 Sum_probs=24.3
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhc-CCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCED-KDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~-~~IP~~~~~ 47 (91)
.+....+++....+||+--+....+-...+..+.+. ..+|++.+.
T Consensus 37 ~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (136)
T 1mvo_A 37 EEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLT 82 (136)
T ss_dssp HHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 355666777778888887554321112222222222 468887654
No 372
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=30.83 E-value=1.1e+02 Score=19.97 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=33.9
Q ss_pred HHHHHHHhCCc-eEEEEeCCCCchhHHhhHHHHHhcCCCC--EEEeC-CHhHHhhHhCC
Q psy6265 4 TVQGPLQRKTI-MLCIFAGDVTPIEIMCHLPAVCEDKDIP--YCYVP-SKKDIGEALGR 58 (91)
Q Consensus 4 ev~kai~~gka-~lViiA~D~sp~~~~~~l~~lc~~~~IP--~~~~~-sk~eLG~a~G~ 58 (91)
+-...+++..+ .++-|+.|. |.. ...++++.++| +-.+. ...+++++.|.
T Consensus 73 ~~~~ef~~~g~d~VigIS~D~-~~~----~~~f~~~~~l~~~f~lLsD~~~~va~ayGv 126 (176)
T 4f82_A 73 EHAEQLRAAGIDEIWCVSVND-AFV----MGAWGRDLHTAGKVRMMADGSAAFTHALGL 126 (176)
T ss_dssp HHHHHHHHTTCCEEEEEESSC-HHH----HHHHHHHTTCTTTSEEEECTTCHHHHHHTC
T ss_pred HHHHHHHhCCCCEEEEEeCCC-HHH----HHHHHHHhCCCCCceEEEcCchHHHHHhCC
Confidence 34455666667 899999994 532 45678888887 65443 45688888875
No 373
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=30.82 E-value=66 Score=22.16 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=29.9
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
.+..+.+.+..++++++|-++.. .. -+..+-+..+||++-+
T Consensus 55 ~~~~~~L~~~g~d~iviaCNTas-~~--~l~~lr~~~~iPvigi 95 (267)
T 2gzm_A 55 WEMTEHLLDLNIKMLVIACNTAT-AV--VLEEMQKQLPIPVVGV 95 (267)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHH-HH--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHCCCCEEEEeCchhh-HH--HHHHHHHhCCCCEEee
Confidence 35567777778999999999755 21 2556667789999874
No 374
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=30.63 E-value=1.1e+02 Score=19.70 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=32.3
Q ss_pred HHHHHhCCce-EEEEeCCCCchhHHhhHHHHHhcCCCC--EEEe-CCHhHHhhHhCCC
Q psy6265 6 QGPLQRKTIM-LCIFAGDVTPIEIMCHLPAVCEDKDIP--YCYV-PSKKDIGEALGRK 59 (91)
Q Consensus 6 ~kai~~gka~-lViiA~D~sp~~~~~~l~~lc~~~~IP--~~~~-~sk~eLG~a~G~~ 59 (91)
.+..+...+. ++-|+.|- +. ....+++++++| +-.+ ....+++++.|..
T Consensus 84 ~~~~~~~gv~~vv~Is~d~-~~----~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~ 136 (184)
T 3uma_A 84 RDAILARGVDDIAVVAVND-LH----VMGAWATHSGGMGKIHFLSDWNAAFTKAIGME 136 (184)
T ss_dssp HHHHHTTTCCEEEEEESSC-HH----HHHHHHHHHTCTTTSEEEECTTCHHHHHTTCE
T ss_pred HHHHHHcCCCEEEEEECCC-HH----HHHHHHHHhCCCCceEEEEcCchHHHHHcCCc
Confidence 3445545577 88888883 42 245677888887 6443 3456899999974
No 375
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=30.58 E-value=55 Score=20.82 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=29.2
Q ss_pred hHHHHHHHhCCceEEEEeCCCC------c-----hhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVT------P-----IEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~s------p-----~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.++.+++. ++++++.---. + ..+-..+..+|++++++++...+
T Consensus 120 ~~li~~l~~~-~~iil~~~~p~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~~~ 175 (218)
T 1vjg_A 120 REILTQAKKL-YPVLMISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFP 175 (218)
T ss_dssp HHHHHHHHHH-SCEEEECCCCCCCTTCTTHHHHHHHHHHHHHHHHHHHTCCEECCTG
T ss_pred HHHHHHHHHh-CcEEEECCCCccccccchHHHHHHHHHHHHHHHHHHcCCcEEehHH
Confidence 4556666665 77777754211 1 13455678899999999987663
No 376
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=30.49 E-value=1e+02 Score=23.53 Aligned_cols=42 Identities=5% Similarity=0.067 Sum_probs=26.3
Q ss_pred hHHHHHHHhCCceEEEE-----eCCCCchhHHhhHHHHHhcCCCCEEEeCCH
Q psy6265 3 STVQGPLQRKTIMLCIF-----AGDVTPIEIMCHLPAVCEDKDIPYCYVPSK 49 (91)
Q Consensus 3 kev~kai~~gka~lVii-----A~D~sp~~~~~~l~~lc~~~~IP~~~~~sk 49 (91)
.+.++.|.+-.+.+||+ +.|+++.. .+ ++.+++|-.+...++
T Consensus 263 ~~~le~I~~~g~~lvi~~k~i~~~~I~~~A--l~---~L~~~~I~av~~~~~ 309 (518)
T 3iyg_D 263 LNLVKQIKKTGCNVLLIQKSILRDALSDLA--LH---FLNKMKIMVVKDIER 309 (518)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCcCHHH--HH---HHHHcCcEEEecCCH
Confidence 44566666677899999 89998732 22 234566766554433
No 377
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=30.42 E-value=28 Score=21.33 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=12.5
Q ss_pred CCCCEEEeCCHhHHh
Q psy6265 39 KDIPYCYVPSKKDIG 53 (91)
Q Consensus 39 ~~IP~~~~~sk~eLG 53 (91)
.++|++.+.+|.+|-
T Consensus 126 ~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 126 ENPDIVLCGNKSDLE 140 (195)
T ss_dssp SSCCEEEEEECTTCG
T ss_pred CCCCEEEEEECcccc
Confidence 689999999888764
No 378
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=30.27 E-value=86 Score=18.41 Aligned_cols=55 Identities=11% Similarity=-0.049 Sum_probs=32.9
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCCCE--EEeCCHhHHhhHhCCCCceEEEEEecC
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPY--CYVPSKKDIGEALGRKKPCICVIVKST 70 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~--~~~~sk~eLG~a~G~~~~~~v~~i~~~ 70 (91)
+++.++.|..|-++.. +..+.+++++++ +......++.+..|....=+..+++.+
T Consensus 71 ~~v~~v~v~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~ 127 (156)
T 1kng_A 71 KRFQLVGINYKDAADN----ARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGRE 127 (156)
T ss_dssp TTSEEEEEEESCCHHH----HHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEEEEECTT
T ss_pred CCeEEEEEECCCCHHH----HHHHHHHcCCCCceeeeCchhHHHHhcCcCccCeEEEEcCC
Confidence 4577777776655532 344455666654 445566789999997644335555443
No 379
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=30.18 E-value=56 Score=22.31 Aligned_cols=40 Identities=10% Similarity=0.176 Sum_probs=24.9
Q ss_pred HHHHHHHhCC--ceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 4 TVQGPLQRKT--IMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 4 ev~kai~~gk--a~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
..+++++.|. +.++.+-+|- | +. .-...|+++|||+..+.
T Consensus 24 all~~~~~~~~~~~I~~Vis~~-~-~a--~~l~~A~~~gIp~~~~~ 65 (215)
T 3kcq_A 24 ALAKAFSTEESSVVISCVISNN-A-EA--RGLLIAQSYGIPTFVVK 65 (215)
T ss_dssp HHHHHTCCC-CSEEEEEEEESC-T-TC--THHHHHHHTTCCEEECC
T ss_pred HHHHHHHcCCCCcEEEEEEeCC-c-ch--HHHHHHHHcCCCEEEeC
Confidence 4566666665 5667666663 2 11 12468899999988764
No 380
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=30.04 E-value=65 Score=23.33 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=32.1
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
+.+..+.+++-+-.+|++-+|... .. . ...|...+||++.+.
T Consensus 83 ~~~l~~~l~~~kPD~Vlv~gd~~~-~~-a--alaA~~~~IPv~h~e 124 (385)
T 4hwg_A 83 IEKVDEVLEKEKPDAVLFYGDTNS-CL-S--AIAAKRRKIPIFHME 124 (385)
T ss_dssp HHHHHHHHHHHCCSEEEEESCSGG-GG-G--HHHHHHTTCCEEEES
T ss_pred HHHHHHHHHhcCCcEEEEECCchH-HH-H--HHHHHHhCCCEEEEe
Confidence 456677888889999999999755 33 2 346789999998765
No 381
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=30.03 E-value=1.2e+02 Score=21.53 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=33.5
Q ss_pred hHHHHHHHhCCceEEEE--eCCCCchhHHhhHHHHHhcCCCCEEEeC--CHh-HHhhHhCCC
Q psy6265 3 STVQGPLQRKTIMLCIF--AGDVTPIEIMCHLPAVCEDKDIPYCYVP--SKK-DIGEALGRK 59 (91)
Q Consensus 3 kev~kai~~gka~lVii--A~D~sp~~~~~~l~~lc~~~~IP~~~~~--sk~-eLG~a~G~~ 59 (91)
.+....++.|+- .+++ ++|-.-.+.-..+...|.+.+||+..++ |.. -.-.+.|.+
T Consensus 79 ~~li~~l~~G~~-Va~lsdaGdP~i~~~g~~lv~~~~~~gi~v~viPGiSA~~aA~a~~Glp 139 (296)
T 3kwp_A 79 PQLIAKLKQGMQ-IAQVSDAGMPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASGLA 139 (296)
T ss_dssp HHHHHHHHTTCE-EEEECSSBCTTSSHHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHSSC
T ss_pred HHHHHHHhcCce-EEEeccCCCCCCCCCchHHHHHHHHcCCCeeeCCCcccchHHHHhccCC
Confidence 345566677764 4444 4665433444567788899999998776 332 333445554
No 382
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=30.01 E-value=79 Score=18.37 Aligned_cols=56 Identities=9% Similarity=-0.011 Sum_probs=33.4
Q ss_pred ChhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCC---EEEeC-CH--------hHHhhHhCCC
Q psy6265 1 MNSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIP---YCYVP-SK--------KDIGEALGRK 59 (91)
Q Consensus 1 ~~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP---~~~~~-sk--------~eLG~a~G~~ 59 (91)
|.++..+.+-+...-.+|-+..|.+ =..+..+-++.+++ |..+. +. ++|.+..|..
T Consensus 7 ~~~~~~~~~i~~~~vv~f~~~~Cp~---C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~ 74 (114)
T 2hze_A 7 MAEEFVQQRLANNKVTIFVKYTCPF---CRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGK 74 (114)
T ss_dssp CHHHHHHTTCCTTCEEEEECTTCHH---HHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccCCEEEEEeCCChh---HHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhCCC
Confidence 4555555555444444555556633 23455666788999 86654 21 4788888864
No 383
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=29.97 E-value=35 Score=23.86 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=13.0
Q ss_pred HHHHhcCCCCEEEeCCHhHH
Q psy6265 33 PAVCEDKDIPYCYVPSKKDI 52 (91)
Q Consensus 33 ~~lc~~~~IP~~~~~sk~eL 52 (91)
...++..++|++.+.+|.+|
T Consensus 108 l~~~~~~~~piilv~NK~DL 127 (301)
T 1u0l_A 108 LVLAEKNELETVMVINKMDL 127 (301)
T ss_dssp HHHHHHTTCEEEEEECCGGG
T ss_pred HHHHHHCCCCEEEEEeHHHc
Confidence 33445567777777777766
No 384
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=29.91 E-value=1e+02 Score=19.24 Aligned_cols=81 Identities=5% Similarity=-0.029 Sum_probs=46.3
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC-CHhHH-hhHhCCCCceEEEEEecCchHHHHHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP-SKKDI-GEALGRKKPCICVIVKSTESVAELYEEV 80 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~-sk~eL-G~a~G~~~~~~v~~i~~~~~~~~~~~~~ 80 (91)
.++.+.|.+.+ ++.|++.-.|- .+...+.......++|+.... +-.++ ..+-.......+.++..+|+-.+ .-.+
T Consensus 30 ~~~~~~i~~a~-~I~i~G~G~S~-~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~-~~~~ 106 (187)
T 3sho_A 30 EAAVEAICRAD-HVIVVGMGFSA-AVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYLRD-TVAA 106 (187)
T ss_dssp HHHHHHHHHCS-EEEEECCGGGH-HHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCCHH-HHHH
T ss_pred HHHHHHHHhCC-EEEEEecCchH-HHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCCHH-HHHH
Confidence 45666676654 55555554443 455666666677899988777 44444 33334445566666777776443 3334
Q ss_pred HHHhhc
Q psy6265 81 KQEIGA 86 (91)
Q Consensus 81 ~~~~~~ 86 (91)
.+..++
T Consensus 107 ~~~ak~ 112 (187)
T 3sho_A 107 LAGAAE 112 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 385
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=29.88 E-value=1.3e+02 Score=23.13 Aligned_cols=22 Identities=9% Similarity=0.329 Sum_probs=18.7
Q ss_pred hHHHHHHHhCCceEEEEeCCCC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVT 24 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~s 24 (91)
.+++..+...++.+|+|++|..
T Consensus 105 ~~lv~~~~~~~~D~VliaGDLf 126 (472)
T 4fbk_A 105 NEILEIARERDVDMILLGGDIF 126 (472)
T ss_dssp HHHHHHHHHTTCSEEEECSCSB
T ss_pred HHHHHHHHhcCCCEEEEcCccc
Confidence 4677778889999999999984
No 386
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=29.83 E-value=42 Score=23.34 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=29.8
Q ss_pred hHHHHHHHh-CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 3 STVQGPLQR-KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 3 kev~kai~~-gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
.+..+.+.+ ..+++++||-|+.. .. -+..+-+..+||++-+
T Consensus 55 ~~~~~~L~~~~g~d~iViACNTas-~~--~l~~lr~~~~iPVigi 96 (272)
T 1zuw_A 55 WELTNYLLENHHIKMLVIACNTAT-AI--ALDDIQRSVGIPVVGV 96 (272)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHH-HH--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHHhhcCCCEEEEeCchhh-HH--HHHHHHHHCCCCEEcc
Confidence 355677777 78999999999755 21 2556667789999874
No 387
>2w6k_A COBE; biosynthetic protein, cobalamin, complete proteome, vitamin B12; 1.70A {Pseudomonas aeruginosa} SCOP: c.151.1.1 PDB: 2bsn_A 2w6l_A
Probab=29.79 E-value=33 Score=22.09 Aligned_cols=24 Identities=8% Similarity=0.128 Sum_probs=18.2
Q ss_pred hHHHHHhcCCCCEEEeCCHhHHhhH
Q psy6265 31 HLPAVCEDKDIPYCYVPSKKDIGEA 55 (91)
Q Consensus 31 ~l~~lc~~~~IP~~~~~sk~eLG~a 55 (91)
-|.++|++.++|+.++ +.++|...
T Consensus 59 gL~~~A~~lg~pl~~~-~~eeL~~v 82 (145)
T 2w6k_A 59 GLRQLATLLERPVHFL-APAVLHDY 82 (145)
T ss_dssp HHHHHHHHHTSCEEEE-CHHHHHTT
T ss_pred HHHHHHHHhCCCcEEe-CHHHHhhc
Confidence 3788999999999774 66666544
No 388
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=29.73 E-value=31 Score=24.18 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=29.5
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcC-CCCEEEe
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDK-DIPYCYV 46 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~-~IP~~~~ 46 (91)
.+..+.+++..+++++||-|+.. . --+..+-+.. +||++-+
T Consensus 59 ~~~~~~L~~~g~~~iVIACNTa~-~--~al~~lr~~~~~iPvigi 100 (268)
T 3out_A 59 AQTAKFLIDQEVKAIIIACNTIS-A--IAKDIVQEIAKAIPVIDV 100 (268)
T ss_dssp HHHHHHHHHTTCSEEEECCHHHH-H--HHHHHHHHHHTTSCEEEH
T ss_pred HHHHHHHHHCCCCEEEEeCCChH-H--HHHHHHHHhcCCCCEEec
Confidence 45667788888999999988744 1 1245555666 8999863
No 389
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=29.68 E-value=1.4e+02 Score=20.46 Aligned_cols=67 Identities=10% Similarity=0.043 Sum_probs=36.3
Q ss_pred HHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC-CHhHHhhHhCCCCceEEEEEecCchHHHHHHHHHHH
Q psy6265 8 PLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP-SKKDIGEALGRKKPCICVIVKSTESVAELYEEVKQE 83 (91)
Q Consensus 8 ai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~-sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~~~ 83 (91)
.+++..++.++||-+..+ .+ ..+-+..+||++-+. .........|+ + ++++-..+.....|++..+.
T Consensus 64 ~l~~~g~d~iviaCnt~~-~l----~~lr~~~~iPvigi~e~~~~~a~~~~~--r--igVlaT~~t~~~~~~~~l~~ 131 (245)
T 3qvl_A 64 AGREQGVDGHVIASFGDP-GL----LAARELAQGPVIGIAEAAMHMATMVAT--R--FSIVTTLPRTLIIARHLLHQ 131 (245)
T ss_dssp HHHHHTCSEEEEC-CCCT-TH----HHHHHHCSSCEEEHHHHHHHHHHHHCS--C--EEEEESCGGGHHHHHHHHHH
T ss_pred HHHHCCCCEEEEeCCChh-HH----HHHHHHcCCCEECccHHHHHHHHHcCC--E--EEEEEcchhHHHHHHHHHHH
Confidence 345566999999999876 33 345567799998753 22222223342 3 33333333334555555544
No 390
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=29.66 E-value=92 Score=22.11 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=28.0
Q ss_pred HHHHHHH---hCCceEEEEeCCCC-------chhHHhhHHHHHhcCCCCEEEe
Q psy6265 4 TVQGPLQ---RKTIMLCIFAGDVT-------PIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 4 ev~kai~---~gka~lViiA~D~s-------p~~~~~~l~~lc~~~~IP~~~~ 46 (91)
+..++++ ..+..+|++-..-+ +.+....|.++|++++++++.-
T Consensus 189 ~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D 241 (439)
T 3dxv_A 189 LLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCD 241 (439)
T ss_dssp HHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 3445553 45677777765432 2233678999999999988753
No 391
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=29.66 E-value=90 Score=23.83 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=30.6
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHh---HHhhHhC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKK---DIGEALG 57 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~---eLG~a~G 57 (91)
+..+.|.+-.+.+||.+.++++. ..+ +..+++|..+...++. +|.+++|
T Consensus 262 ~~v~~I~~~g~~vvi~~~~I~~l--a~~---~l~k~~I~av~~~~~~dle~ia~~tG 313 (512)
T 3iyg_Q 262 AQVKAIADTGANVVVTGGRVADM--ALH---YANKYNIMLVRLNSKWDLRRLCKTVG 313 (512)
T ss_pred HHHHHHHHhCCCEEEECCCccHH--HHH---HHHHCCeEEEEeCCHHHHHHHHHHhC
Confidence 33446666669999999999873 233 3456788777655444 3444444
No 392
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=29.63 E-value=97 Score=18.76 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=21.7
Q ss_pred HhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEE-EeCCHh
Q psy6265 10 QRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYC-YVPSKK 50 (91)
Q Consensus 10 ~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~-~~~sk~ 50 (91)
++....+|+|.++... .+...+..+-.....|.+ .++|+.
T Consensus 43 ~~~digIIlIte~~a~-~i~~~i~~~~~~~~~P~Il~IPs~~ 83 (109)
T 2d00_A 43 ERGGYALVAVDEALLP-DPERAVERLMRGRDLPVLLPIAGLK 83 (109)
T ss_dssp HHCCCSEEEEETTTCS-CHHHHHHHHTTCCCCCEEEEESCGG
T ss_pred hCCCeEEEEEeHHHHH-hhHHHHHHHHhCCCCeEEEEECCCc
Confidence 4456777777777665 444434333335556653 355554
No 393
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=29.59 E-value=67 Score=23.32 Aligned_cols=20 Identities=15% Similarity=0.032 Sum_probs=15.6
Q ss_pred hHHhhHHHHHhcCCCCEEEe
Q psy6265 27 EIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 27 ~~~~~l~~lc~~~~IP~~~~ 46 (91)
....++..+|.+.++|++++
T Consensus 147 ~Ka~r~~~~A~~~~~PlI~l 166 (327)
T 2f9i_A 147 RKALRLMKQAEKFNRPIFTF 166 (327)
T ss_dssp HHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhhcCCCEEEE
Confidence 33456889999999999754
No 394
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=29.55 E-value=54 Score=26.00 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=31.4
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDI 52 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eL 52 (91)
..++..+++.-..-++++...-....-...+...+..+++|++.+.+|.++
T Consensus 89 ~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl 139 (693)
T 2xex_A 89 TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDK 139 (693)
T ss_dssp CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTS
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCc
Confidence 356778887766555555443221112234556788899999888776554
No 395
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=29.47 E-value=14 Score=21.68 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=31.5
Q ss_pred HHHHhCCceEEEEeCCCCchhHHhhHHHHHhcC-CCCEEEeCC---HhHHhhHhCCCCceEEEEEecCchHHHHHHHHHH
Q psy6265 7 GPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDK-DIPYCYVPS---KKDIGEALGRKKPCICVIVKSTESVAELYEEVKQ 82 (91)
Q Consensus 7 kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~-~IP~~~~~s---k~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~~ 82 (91)
..+++....+||+--+....+-...+..+-+.. ++|++.+.+ ....-++... .+..++..+-+.++....+..
T Consensus 53 ~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~---g~~~~l~KP~~~~~L~~~i~~ 129 (135)
T 3snk_A 53 GPPADTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLVRM---NASDWLHKPLDGKELLNAVTF 129 (135)
T ss_dssp CCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCCHHHHHHHHHT---TCSEEEESSCCHHHHHHHHHH
T ss_pred HHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHc---CcHhhccCCCCHHHHHHHHHH
Confidence 344555666777765443222122222222222 678765443 3333333321 123344455444444444433
No 396
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=29.36 E-value=1.1e+02 Score=19.52 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=38.9
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHh---HHhhHhCCC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKK---DIGEALGRK 59 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~---eLG~a~G~~ 59 (91)
+++..+.|.+-.+.+||.-..+++. .. .++.++||..+.--++. .|.+++|-.
T Consensus 61 l~~~v~kI~~~g~nVVl~~k~I~d~--a~---~~l~k~gI~~v~~v~~~dleria~atGa~ 116 (159)
T 1ass_A 61 FKQMVEKIKKSGANVVLCQKGIDDV--AQ---HYLAKEGIYAVRRVKKSDMEKLAKATGAK 116 (159)
T ss_dssp HHHHHHHHHHTTCSEEEESSCBCHH--HH---HHHHHTTCEEECSCCHHHHHHHHHHHTCC
T ss_pred HHHHhhhhhhCCCeEEEECCccCHH--HH---HHHHHCCCEEEccCCHHHHHHHHHHhCCe
Confidence 3566777888889999999998773 33 45689999988766555 667777743
No 397
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=29.23 E-value=1e+02 Score=23.87 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=30.6
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHh
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIG 53 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG 53 (91)
++.++.|.+-.+.+||++.|+++. ..++ +.++||-.+..-.+.+|-
T Consensus 284 ~~~vekI~~~g~~vvI~~~~I~~~--al~~---L~~~gI~~v~~v~k~~le 329 (553)
T 3ko1_A 284 KEKVDKILATGANVIICQKGIDEV--AQSY---LAKKGVLAVRRAKKSDLE 329 (553)
T ss_dssp HHHHHHHHTTCCSEEECSSCBCSH--HHHH---HHHHTCEEECCCCHHHHH
T ss_pred HHHHHHHHhhcceEEEeccChHHH--HHHH---HHhcchhhhhhhhhhhHH
Confidence 455667777779999999999883 2232 246778766655555443
No 398
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=29.14 E-value=1e+02 Score=19.54 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=32.2
Q ss_pred CCceEEEEeCCCCc------hhHHhhHHHHH---------hcCCCCEEEeC-----CHhHHhhHhCCCCce-EEEEEecC
Q psy6265 12 KTIMLCIFAGDVTP------IEIMCHLPAVC---------EDKDIPYCYVP-----SKKDIGEALGRKKPC-ICVIVKST 70 (91)
Q Consensus 12 gka~lViiA~D~sp------~~~~~~l~~lc---------~~~~IP~~~~~-----sk~eLG~a~G~~~~~-~v~~i~~~ 70 (91)
+..+.||+-+|..+ ......+..++ ++.+|++..++ +..+|-...+..... .+..+.+.
T Consensus 126 ~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA~~~~G~~~~~~~~~~ 205 (223)
T 1q0p_A 126 RTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDM 205 (223)
T ss_dssp GCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSCCCTTCCCEEETTC-
T ss_pred cCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHhcCCCCCceEEEcCCH
Confidence 45678888888743 23333344333 45678765433 356777777654321 34445556
Q ss_pred chHHHHHHHHHHH
Q psy6265 71 ESVAELYEEVKQE 83 (91)
Q Consensus 71 ~~~~~~~~~~~~~ 83 (91)
.+..+.|++++++
T Consensus 206 ~~L~~~~~~i~~~ 218 (223)
T 1q0p_A 206 ENLEDVFYQMIDE 218 (223)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhcc
Confidence 6667777766543
No 399
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=29.02 E-value=74 Score=18.33 Aligned_cols=44 Identities=16% Similarity=0.063 Sum_probs=24.7
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHh-cCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCE-DKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~-~~~IP~~~~~ 47 (91)
.+....++++...+||+-- ....+-...+..+-+ ..++|++.+.
T Consensus 38 ~~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls 82 (142)
T 2qxy_A 38 QEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLS 82 (142)
T ss_dssp HHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEE
Confidence 4566777788888888876 432222222222322 2368877654
No 400
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=28.93 E-value=81 Score=24.22 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=41.9
Q ss_pred HHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC--H--hHHhhH-hCCCCceEEEEEecCchHH
Q psy6265 5 VQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS--K--KDIGEA-LGRKKPCICVIVKSTESVA 74 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s--k--~eLG~a-~G~~~~~~v~~i~~~~~~~ 74 (91)
+..++++| +++|+|++..+. .....+...|+++++.++=-.+ - ..+.-. ...-.+..++++..+|-..
T Consensus 53 v~e~~~~G-v~~viis~Gf~~-~~~~~l~~~A~~~g~rliGPNcG~~~~~~~~~~f~~~~~~G~vaivSqSGal~ 125 (480)
T 3dmy_A 53 ANQALDRN-LNVMMFSDNVTL-EDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGI 125 (480)
T ss_dssp HHHHHHTT-CEEEECCCCCCH-HHHHHHHHHHHHTTCCEECSSCCEEEETTEEEESCCCCCEEEEEEEESCSHHH
T ss_pred HHHHHhcC-CCEEEECCCCCH-HHHHHHHHHHHHcCCEEEecCccccccCCccccccCCCCCCCEEEEeccHHHH
Confidence 45566777 668888877764 5667899999999997752211 0 001000 0112356788998888763
No 401
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=28.90 E-value=26 Score=22.72 Aligned_cols=21 Identities=19% Similarity=0.040 Sum_probs=17.3
Q ss_pred hHHhhHHHHHhcCCCCEEEeC
Q psy6265 27 EIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 27 ~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+..++..+++++|||++.-.
T Consensus 81 ~~A~~I~e~A~e~gVPi~e~~ 101 (137)
T 3bzs_A 81 AKALQIIKLAELYDIPVIEDI 101 (137)
T ss_dssp HHHHHHHHHHHHHTCCEEECH
T ss_pred HHHHHHHHHHHHcCCCEEeCH
Confidence 467789999999999997644
No 402
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=28.83 E-value=86 Score=17.95 Aligned_cols=79 Identities=10% Similarity=0.047 Sum_probs=39.8
Q ss_pred hHHHHHHHh-----CCceEEEEeCCCCc---hhHHhhHHHHH--hcCCCCEEEeCCHh---HHhhHhCCCCceEEEEEec
Q psy6265 3 STVQGPLQR-----KTIMLCIFAGDVTP---IEIMCHLPAVC--EDKDIPYCYVPSKK---DIGEALGRKKPCICVIVKS 69 (91)
Q Consensus 3 kev~kai~~-----gka~lViiA~D~sp---~~~~~~l~~lc--~~~~IP~~~~~sk~---eLG~a~G~~~~~~v~~i~~ 69 (91)
.+....+++ ....+||+--+... .++...+.... ...++|++.+.+.. ..-++... ..+..++..
T Consensus 45 ~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~--g~~~~~l~K 122 (146)
T 3ilh_A 45 NAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEAS--DWVDYYVSK 122 (146)
T ss_dssp HHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHC--SSCCEEECS
T ss_pred HHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhc--CCcceeeeC
Confidence 355666776 77888888765432 23333333322 34678877665433 33333221 113445555
Q ss_pred CchHHHHHHHHHHH
Q psy6265 70 TESVAELYEEVKQE 83 (91)
Q Consensus 70 ~~~~~~~~~~~~~~ 83 (91)
+-+.++....|...
T Consensus 123 P~~~~~L~~~i~~~ 136 (146)
T 3ilh_A 123 PLTANALNNLYNKV 136 (146)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 55545544444433
No 403
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=28.81 E-value=96 Score=19.64 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=27.6
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.++++.+++.-. .|+||+-=+. +....+..+++++++|+..+.
T Consensus 30 ~~al~~l~~~G~-~iii~TgR~~-~~~~~~~~~l~~~gi~~~~I~ 72 (142)
T 2obb_A 30 VETLKLLQQEKH-RLILWSVREG-ELLDEAIEWCRARGLEFYAAN 72 (142)
T ss_dssp HHHHHHHHHTTC-EEEECCSCCH-HHHHHHHHHHHTTTCCCSEES
T ss_pred HHHHHHHHHCCC-EEEEEeCCCc-ccHHHHHHHHHHcCCCeEEEE
Confidence 577777765544 4555554444 345567888999999875443
No 404
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=28.75 E-value=32 Score=20.88 Aligned_cols=21 Identities=14% Similarity=-0.021 Sum_probs=17.4
Q ss_pred hHHhhHHHHHhcCCCCEEEeC
Q psy6265 27 EIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 27 ~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+..++...++++|||++.-.
T Consensus 42 ~~A~~I~~~A~e~gVPi~e~~ 62 (97)
T 3t7y_A 42 LRAKRIIAEAEKYGVPIMRNV 62 (97)
T ss_dssp HHHHHHHHHHHHHTCCEEECH
T ss_pred HHHHHHHHHHHHcCCeEEECH
Confidence 467789999999999997543
No 405
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=28.71 E-value=33 Score=20.45 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=13.1
Q ss_pred CCCCEEEeCCHhHHhh
Q psy6265 39 KDIPYCYVPSKKDIGE 54 (91)
Q Consensus 39 ~~IP~~~~~sk~eLG~ 54 (91)
.++|++.+.+|.+|-.
T Consensus 108 ~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 108 GDIPTALVQNKIDLLD 123 (168)
T ss_dssp CSCCEEEEEECGGGGG
T ss_pred CCCCEEEEEECcccCc
Confidence 4899999999988743
No 406
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=28.69 E-value=89 Score=19.97 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=30.6
Q ss_pred hHHHHHHHhC--CceEEEEeCCCC-c-----------------hhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 3 STVQGPLQRK--TIMLCIFAGDVT-P-----------------IEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 3 kev~kai~~g--ka~lViiA~D~s-p-----------------~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.++.+++. .++++++..--. + ..+...+..+|+++++|++...+
T Consensus 117 ~~li~~l~~~~P~~~iil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~v~~iD~~~ 182 (232)
T 3dc7_A 117 MMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLSLYR 182 (232)
T ss_dssp HHHHHHHHHHCTTSCEEEEECCCCCSCSBTTBCSSCCTTSCCHHHHHHHHHHHHHHHTCCEEEHHH
T ss_pred HHHHHHHHHhCCCCeEEEEeCcccCCccCCcccccccccchHHHHHHHHHHHHHHHcCCcEEeccc
Confidence 3456666665 678887754211 0 24566788999999999986543
No 407
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=34.79 E-value=12 Score=22.42 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.4
Q ss_pred HHhhHHHHHhcCCCCEEE
Q psy6265 28 IMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 28 ~~~~l~~lc~~~~IP~~~ 45 (91)
+..++...++++|||++.
T Consensus 28 ~A~~I~e~A~e~~VPi~e 45 (87)
T 3b1s_B 28 IAQKIVEIAENYSIPVVR 45 (87)
Confidence 567899999999999964
No 408
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=28.62 E-value=42 Score=24.32 Aligned_cols=45 Identities=7% Similarity=-0.038 Sum_probs=29.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCCch-hHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPI-EIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~-~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+..++++..+.+++++..-..|. .-.+.+.++|+++++.++.-.
T Consensus 175 ~~l~~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~De 220 (447)
T 3h7f_A 175 DAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDM 220 (447)
T ss_dssp HHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEEC
Confidence 345566666667888884333221 124678999999999776533
No 409
>1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4
Probab=28.62 E-value=24 Score=26.96 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=17.8
Q ss_pred CCchhHHhhHHHHHhcCCCCEEE
Q psy6265 23 VTPIEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 23 ~sp~~~~~~l~~lc~~~~IP~~~ 45 (91)
+++ .+...+..+|++++||+-.
T Consensus 377 ~~~-~~~~~l~~~a~~~~Ip~Q~ 398 (458)
T 1y7e_A 377 ADA-ELVSYIRQLLNKNNIAWQV 398 (458)
T ss_dssp -CH-HHHHHHHHHHHHHTCCEEE
T ss_pred CCH-HHHHHHHHHHHHcCCCeEE
Confidence 455 6788999999999999854
No 410
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=28.58 E-value=84 Score=17.74 Aligned_cols=55 Identities=7% Similarity=0.084 Sum_probs=32.2
Q ss_pred CceEEEEeCCCCchhHHhhHHHHHhcCCC-CEE-EeCCHhHHhhHhCCCCceEEEEEecCc
Q psy6265 13 TIMLCIFAGDVTPIEIMCHLPAVCEDKDI-PYC-YVPSKKDIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 13 ka~lViiA~D~sp~~~~~~l~~lc~~~~I-P~~-~~~sk~eLG~a~G~~~~~~v~~i~~~~ 71 (91)
.+.++.+..|-++. .+..+.+++++ ++- ......++.+..|....=++.+++.+|
T Consensus 56 ~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g 112 (136)
T 1zzo_A 56 EVTFVGVAGLDQVP----AMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHG 112 (136)
T ss_dssp TSEEEEEECSSCHH----HHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTC
T ss_pred CeEEEEEeCCCCHH----HHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCceEEEECCCC
Confidence 46677776665442 24445566666 442 234566888888876444556665444
No 411
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=28.42 E-value=56 Score=25.40 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=32.1
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCH---hHHhhHhC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSK---KDIGEALG 57 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk---~eLG~a~G 57 (91)
.+.++.|.+-.+.+||++.|+++.. .+ ++..++|..+....+ ++|.+++|
T Consensus 307 ~~~lekI~~~g~~vvI~~~~I~~~A--l~---~L~~~~I~~v~~v~k~~le~ia~~TG 359 (562)
T 3p9d_E 307 KEMIDDVKKAGADVVICQWGFDDEA--NH---LLLQNDLPAVRWVGGQELEHIAISTN 359 (562)
T ss_dssp HHHHHHHHHHTCSCCEECSSCCSHH--HH---HHHTTTCCCEECCCTTTHHHHHHHHC
T ss_pred HHHHHHHHHcCCcEEEEeCCCCHHH--HH---HHHHCCCEEEeccCHHHHHHHHHHhC
Confidence 3455666566688999999998832 22 446778876654433 35555555
No 412
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=28.40 E-value=57 Score=22.20 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=26.5
Q ss_pred CceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 13 TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 13 ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
...+||.|.|. + +....+...|.++++|++...
T Consensus 121 ~~DvVi~~~d~-~-~~~~~l~~~~~~~~~p~i~~~ 153 (249)
T 1jw9_B 121 EHDLVLDCTDN-V-AVRNQLNAGCFAAKVPLVSGA 153 (249)
T ss_dssp TSSEEEECCSS-H-HHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEeCCC-H-HHHHHHHHHHHHcCCCEEEee
Confidence 47899999985 4 456678999999999998853
No 413
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=28.36 E-value=62 Score=24.59 Aligned_cols=45 Identities=0% Similarity=-0.084 Sum_probs=29.1
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.++.+.|.+.+--++++..-+........+..+++..++|++...
T Consensus 200 ~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~ 244 (568)
T 2wvg_A 200 EETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMA 244 (568)
T ss_dssp HHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEG
T ss_pred HHHHHHHHhCCCCEEEECccccccchHHHHHHHHHHhCCCEEEch
Confidence 345566666665555554444322335678999999999997654
No 414
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=28.35 E-value=71 Score=22.76 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=33.6
Q ss_pred CCCchhHHhhHHHHHhcCCCCEEEeCC--HhHHhhHhCCCCceEEE--E-Eec-------CchHHHHHHHHHHHhh
Q psy6265 22 DVTPIEIMCHLPAVCEDKDIPYCYVPS--KKDIGEALGRKKPCICV--I-VKS-------TESVAELYEEVKQEIG 85 (91)
Q Consensus 22 D~sp~~~~~~l~~lc~~~~IP~~~~~s--k~eLG~a~G~~~~~~v~--~-i~~-------~~~~~~~~~~~~~~~~ 85 (91)
+.||.+ ...+..++++++|+++|+.+ ...+-+.+-+...+-++ + ++. ++.|.+.++...+.|.
T Consensus 222 ePs~~~-l~~l~~~ik~~~v~~If~e~~~~~k~~~~ia~e~g~~v~~~l~~d~l~~~~~~~~~Y~~~m~~n~~~l~ 296 (307)
T 3ujp_A 222 QFTPKQ-VQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGARFGGNLYVDSLSTEEGPVPTFLDLLEYDARVIT 296 (307)
T ss_dssp CCCHHH-HHHHHHHHHTTTCSEEEEETTSCSHHHHHTTTTTCCEEEEEECSSCCCCSSSSCSSHHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHhCCceeeeeeccCCCCCCCCccCHHHHHHHHHHHHH
Confidence 345544 45688888899999887653 22344444444333332 1 221 2356665555555543
No 415
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=28.34 E-value=72 Score=23.33 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=15.1
Q ss_pred HHhhHHHHHhcCCCCEEEe
Q psy6265 28 IMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 28 ~~~~l~~lc~~~~IP~~~~ 46 (91)
...++..+|.+.++|++++
T Consensus 162 Ka~r~~~~A~~~~lPlI~l 180 (339)
T 2f9y_A 162 KALRLMQMAERFKMPIITF 180 (339)
T ss_dssp HHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhhcCCCEEEE
Confidence 3456889999999999754
No 416
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=28.33 E-value=1.4e+02 Score=20.71 Aligned_cols=46 Identities=13% Similarity=0.017 Sum_probs=28.7
Q ss_pred HHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC---------HhHHhhHhCCC
Q psy6265 8 PLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS---------KKDIGEALGRK 59 (91)
Q Consensus 8 ai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s---------k~eLG~a~G~~ 59 (91)
.|..-+--|||.... .+ .....| ++.+||++.+.. -..||+++|+.
T Consensus 111 ~i~al~PDLIi~~~~-~~-~~~~~L----~~~gipvv~~~~~~~~~~~~~i~~lg~~lg~e 165 (335)
T 4hn9_A 111 ACVAATPDVVFLPMK-LK-KTADTL----ESLGIKAVVVNPEDQSLLEECITLVGKITNNA 165 (335)
T ss_dssp HHHHTCCSEEEEEGG-GH-HHHHHH----HHTTCCEEEECCCSHHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCCCEEEEeCc-ch-hHHHHH----HHcCCCEEEEcCCCHHHHHHHHHHHHHHcCCH
Confidence 444556667776543 22 333333 577899987752 24789999975
No 417
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=28.31 E-value=93 Score=18.13 Aligned_cols=46 Identities=7% Similarity=-0.011 Sum_probs=26.7
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeCCHh
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVPSKK 50 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~sk~ 50 (91)
.+.+..+++....+||+--+... .++...+.. ...++|++.+.+..
T Consensus 39 ~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~--~~~~~~ii~ls~~~ 87 (141)
T 3cu5_A 39 INAIQIALKHPPNVLLTDVRMPRMDGIELVDNILK--LYPDCSVIFMSGYS 87 (141)
T ss_dssp HHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHH--HCTTCEEEEECCST
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHh--hCCCCcEEEEeCCC
Confidence 35566677777888888655432 233333332 23578888765543
No 418
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=28.10 E-value=38 Score=20.02 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=16.1
Q ss_pred HHHHHhcCCCCEEEeCCHhHHh
Q psy6265 32 LPAVCEDKDIPYCYVPSKKDIG 53 (91)
Q Consensus 32 l~~lc~~~~IP~~~~~sk~eLG 53 (91)
+...+...++|++.+.+|.+|-
T Consensus 100 i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 100 IIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp HHHHTTTSCCCEEEEEECGGGG
T ss_pred HHHhcCCCCCCEEEEEECCccc
Confidence 3344455689999999988873
No 419
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=28.06 E-value=87 Score=22.57 Aligned_cols=49 Identities=27% Similarity=0.370 Sum_probs=29.3
Q ss_pred hHHHHHHHhCCceEEEEeCCCCch-------hHHhhHHHHHhcCCCCEEEeCCHhHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPI-------EIMCHLPAVCEDKDIPYCYVPSKKDI 52 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~-------~~~~~l~~lc~~~~IP~~~~~sk~eL 52 (91)
+.+++.+++.+..+||+++|.... .+...+..+ ...++|+..+....|.
T Consensus 82 ~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l-~~~~~~~~~v~GNHD~ 137 (443)
T 2xmo_A 82 DAFLADVESKKTDVLIISGDLTNNGEKTSHEELAKKLTQV-EKNGTQVFVVPGNHDI 137 (443)
T ss_dssp HHHHHHHHHHTCSEEEEESCCBSSCCHHHHHHHHHHHHHH-HHTTCEEEEECCTTTS
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHH-HhCCCeEEEECCcCCC
Confidence 345556667779999999998521 111222222 2348998887655543
No 420
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=28.01 E-value=51 Score=22.87 Aligned_cols=40 Identities=5% Similarity=0.044 Sum_probs=25.5
Q ss_pred HHHHHHhCCceEEEEeCCCCc------hhHHhhHHHHHhcCCCCEEE
Q psy6265 5 VQGPLQRKTIMLCIFAGDVTP------IEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~sp------~~~~~~l~~lc~~~~IP~~~ 45 (91)
..+++.. +.++|++.+=-+| .+-...+.++|+++++.++.
T Consensus 161 l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 206 (396)
T 3jtx_A 161 ISEEVWK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIAS 206 (396)
T ss_dssp SCHHHHH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHhhcc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 3445554 6888888532222 13356688999999998763
No 421
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=27.95 E-value=27 Score=22.16 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=17.2
Q ss_pred hHHhhHHHHHhcCCCCEEEeC
Q psy6265 27 EIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 27 ~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+..++...++++|||++.-.
T Consensus 71 ~~A~~I~~~A~e~~VPi~e~~ 91 (123)
T 2jli_A 71 AQVQTVRKIAEEEGVPILQRI 91 (123)
T ss_dssp HHHHHHHHHHHHHTCCEEECH
T ss_pred HHHHHHHHHHHHcCCCEEeCH
Confidence 467789999999999997543
No 422
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=27.95 E-value=66 Score=21.40 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=25.2
Q ss_pred ceEEEEeCCCCchhHHhhHHHHHhcCCCCEE-EeCCH
Q psy6265 14 IMLCIFAGDVTPIEIMCHLPAVCEDKDIPYC-YVPSK 49 (91)
Q Consensus 14 a~lViiA~D~sp~~~~~~l~~lc~~~~IP~~-~~~sk 49 (91)
.+..||....|...+.++....+++.+|||. .+-|-
T Consensus 4 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~Sa 40 (163)
T 3ors_A 4 MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSA 40 (163)
T ss_dssp CCEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3445555555555788888899999999984 45553
No 423
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=27.82 E-value=1.3e+02 Score=19.78 Aligned_cols=40 Identities=3% Similarity=0.017 Sum_probs=22.6
Q ss_pred HHHHHHHhCCceEEEEe-CCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 4 TVQGPLQRKTIMLCIFA-GDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 4 ev~kai~~gka~lViiA-~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
+..+.+..+++.-+|+. .+.++ .. ...+.+.+||++.+.+
T Consensus 55 ~~~~~l~~~~vdgiIi~~~~~~~-~~----~~~l~~~~iPvV~~~~ 95 (287)
T 3bbl_A 55 IYRDLIRSGNVDGFVLSSINYND-PR----VQFLLKQKFPFVAFGR 95 (287)
T ss_dssp HHHHHHHTTCCSEEEECSCCTTC-HH----HHHHHHTTCCEEEESC
T ss_pred HHHHHHHcCCCCEEEEeecCCCc-HH----HHHHHhcCCCEEEECC
Confidence 34555666666655554 44333 22 2334568999987754
No 424
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=27.80 E-value=1.5e+02 Score=20.42 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=29.4
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
.+..+.+.+..++++++|-++... . -+..+-+..+||++-+
T Consensus 59 ~~~~~~L~~~g~d~IViACNTas~-~--~l~~lr~~~~iPVigi 99 (276)
T 2dwu_A 59 FEMVEFLKQFPLKALVVACNTAAA-A--TLAALQEALSIPVIGV 99 (276)
T ss_dssp HHHHHHHTTSCEEEEEECCHHHHH-H--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHCCCCEEEEeCCcHHH-H--HHHHHHHHCCCCEEec
Confidence 456677777789999999987431 1 2556667789999863
No 425
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=27.79 E-value=27 Score=22.77 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=17.4
Q ss_pred hHHhhHHHHHhcCCCCEEEeC
Q psy6265 27 EIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 27 ~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.+..++...|+++|||++.-.
T Consensus 80 ~~A~~I~e~A~e~gVPi~e~~ 100 (144)
T 2jlj_A 80 AQVQTVRKIAEEEGVPILQRI 100 (144)
T ss_dssp HHHHHHHHHHHHHTCCEEECH
T ss_pred HHHHHHHHHHHHcCCCEEeCH
Confidence 467789999999999997644
No 426
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=27.75 E-value=1.1e+02 Score=18.81 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=28.7
Q ss_pred hHHHHHHHhCCceEEEEeCCC------Cc--------hhHHhhHHHHHhcCCCCEEEe
Q psy6265 3 STVQGPLQRKTIMLCIFAGDV------TP--------IEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~------sp--------~~~~~~l~~lc~~~~IP~~~~ 46 (91)
++.++.+++..++++++.--- .+ ..+-..+..+|++++++++..
T Consensus 104 ~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~ 161 (204)
T 3p94_A 104 VSMAELAKANHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLTYVDY 161 (204)
T ss_dssp HHHHHHHHHTTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHHTTCEEECH
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcCCcEEch
Confidence 456677777778888775310 00 133455788999999988754
No 427
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=27.70 E-value=30 Score=25.47 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=16.7
Q ss_pred HHhhHHHHHhcCCCCEEEeCCHhHH
Q psy6265 28 IMCHLPAVCEDKDIPYCYVPSKKDI 52 (91)
Q Consensus 28 ~~~~l~~lc~~~~IP~~~~~sk~eL 52 (91)
...++..+|+..++|.+.+.+|.+|
T Consensus 148 ~i~r~L~~a~~~~~~~iivlNK~DL 172 (358)
T 2rcn_A 148 IIDRYLVGCETLQVEPLIVLNKIDL 172 (358)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECGGG
T ss_pred HHHHHHHHHHhcCCCEEEEEECccC
Confidence 3455556667777777777777766
No 428
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=27.59 E-value=40 Score=20.37 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=31.8
Q ss_pred HHHhcCCCCEEEeCCHhHHhh--------HhCCCCc--------eEEEEE--ecCchHHHHHHHHHHHhhcCCC
Q psy6265 34 AVCEDKDIPYCYVPSKKDIGE--------ALGRKKP--------CICVIV--KSTESVAELYEEVKQEIGALPV 89 (91)
Q Consensus 34 ~lc~~~~IP~~~~~sk~eLG~--------a~G~~~~--------~~v~~i--~~~~~~~~~~~~~~~~~~~~~~ 89 (91)
......++|++.+.+|.+|-. .+..... ..+.-+ ..+....+.++.|.+.++....
T Consensus 101 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 101 NHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp HHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 344567899999998877642 2211110 112222 2344567888888877765544
No 429
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=27.56 E-value=73 Score=22.35 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=27.6
Q ss_pred HHHHHHHh----CCceEEEEeC---CCC----chhHHhhHHHHHhcCCCCEEEe
Q psy6265 4 TVQGPLQR----KTIMLCIFAG---DVT----PIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 4 ev~kai~~----gka~lViiA~---D~s----p~~~~~~l~~lc~~~~IP~~~~ 46 (91)
+..+++++ .+.++|++-. ++. +.+....|.++|++++++++.-
T Consensus 186 ~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~D 239 (426)
T 1sff_A 186 SIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIAD 239 (426)
T ss_dssp HHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 34455654 4567777732 222 3344678999999999987753
No 430
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B
Probab=27.44 E-value=51 Score=25.96 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=22.5
Q ss_pred eEEEEeCCCCc----hhHHhhHHHHHhcCCCCEEE
Q psy6265 15 MLCIFAGDVTP----IEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 15 ~lViiA~D~sp----~~~~~~l~~lc~~~~IP~~~ 45 (91)
...|||++... .....++..+|++.+||+++
T Consensus 358 ~Vgvian~G~l~~~~a~Kaarfi~~c~~~~iPlv~ 392 (555)
T 3u9r_B 358 PIAILANNGILFAEAAQKGAHFIELACQRGIPLLF 392 (555)
T ss_dssp EEEEEEECSSBCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEEEeCCccCHHHHHHHHHHHHHHhcCCCCEEE
Confidence 35678877432 13456789999999999975
No 431
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=27.43 E-value=86 Score=21.66 Aligned_cols=32 Identities=3% Similarity=-0.002 Sum_probs=24.5
Q ss_pred CceEEEEeCCCCchhHHhhHHHHHhcCCCCEEE
Q psy6265 13 TIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 13 ka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~ 45 (91)
...+.|+..|.++ +-...+..+++..++.+.+
T Consensus 35 ~~~~~il~~~is~-~~~~~L~~~~~~~~~~i~~ 66 (276)
T 3tzt_A 35 IFDVYLIHSRISE-DKLKDLGEDLKKFSYTLYP 66 (276)
T ss_dssp CEEEEEEESCCCH-HHHHHHHHHHHTTTCEEEE
T ss_pred ceEEEEEeCCCCH-HHHHHHHHHHHHcCCEEEE
Confidence 3677889999988 4567899998888765544
No 432
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=27.40 E-value=93 Score=22.54 Aligned_cols=43 Identities=9% Similarity=-0.012 Sum_probs=32.6
Q ss_pred HHHHHh--CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 6 QGPLQR--KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 6 ~kai~~--gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
.+++++ ..+..++|-.-......+..+..+.++.|||++...|
T Consensus 254 ~~ai~~~~~~~~~~~iD~K~~k~~~R~~i~~~l~~lgi~v~k~~~ 298 (298)
T 2gfq_A 254 IKALNRFGEKVEAIYVDWKGSRGETRQLAKSLAQELGLEFIKDGS 298 (298)
T ss_dssp HHHHTCBSSCCCEEEEESTTSCHHHHHHHHHHHHHHTCEEEEEC-
T ss_pred HHHHHhhcCCCCEEEEecCCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 566766 5788888875445546788999999999999987653
No 433
>2ehb_D CBL-interacting serine/threonine-protein kinase 2; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana}
Probab=27.37 E-value=38 Score=21.82 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=39.8
Q ss_pred eCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHH-hhHhCCCCceEE--------------EEEecC---chHHHHHHHHH
Q psy6265 20 AGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDI-GEALGRKKPCIC--------------VIVKST---ESVAELYEEVK 81 (91)
Q Consensus 20 A~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eL-G~a~G~~~~~~v--------------~~i~~~---~~~~~~~~~~~ 81 (91)
.+..++.++..+|...|+..+--+..-..+..| |.--|++...++ =+-..+ .+|++.|+++.
T Consensus 39 ~s~~~a~~ii~klEe~a~~lg~~V~kk~~~vkl~~~~~grkG~l~v~~EVfevapsl~vVEvrks~GD~lEy~k~~~~Lr 118 (143)
T 2ehb_D 39 VSRREPSEIIANIEAVANSMGFKSHTRNFKTRLEGLSSIKAGQLAVVIEIYEVAPSLFMVDVRKAAGETLEYHKFYKKLC 118 (143)
T ss_dssp EECSCHHHHHHHHHHHHHHTTEEEEESSSEEEEEECCSSGGGCCEEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHhcCcEEEEcCcEEEEEEecCCCcceEEEEEEEEEecCCEEEEEEEecCCChHHHHHHHHHHH
Confidence 344567789999999999988655443333222 222232212111 111222 35677778888
Q ss_pred HHhhcCCCCC
Q psy6265 82 QEIGALPVTW 91 (91)
Q Consensus 82 ~~~~~~~~~~ 91 (91)
+.++.+=..|
T Consensus 119 ~~L~diV~~~ 128 (143)
T 2ehb_D 119 SKLENIIWRA 128 (143)
T ss_dssp HHSTTTBCC-
T ss_pred HHhhcceecC
Confidence 8887665444
No 434
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=27.36 E-value=67 Score=22.22 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=25.0
Q ss_pred HHHHHHhCCceEEEEeCCCCc------hhHHhhHHHHHhcCCCCEEE
Q psy6265 5 VQGPLQRKTIMLCIFAGDVTP------IEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~sp------~~~~~~l~~lc~~~~IP~~~ 45 (91)
..++++. +.++|++.+=-+| .+-...+.++|++++++++.
T Consensus 153 l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 198 (389)
T 1gd9_A 153 LKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVIS 198 (389)
T ss_dssp HHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3344433 5788887532111 13456789999999998764
No 435
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=27.34 E-value=1.3e+02 Score=19.64 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=22.2
Q ss_pred HHHHHhCCceEEEEe-CCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 6 QGPLQRKTIMLCIFA-GDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 6 ~kai~~gka~lViiA-~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.+..+++.-+|+. .|.+ ... .....+.+.+||++.+.+
T Consensus 50 i~~l~~~~vdgiIi~~~~~~--~~~-~~~~~~~~~~iPvV~i~~ 90 (271)
T 2dri_A 50 VQDLTVRGTKILLINPTDSD--AVG-NAVKMANQANIPVITLDR 90 (271)
T ss_dssp HHHHTTTTEEEEEECCSSTT--TTH-HHHHHHHHTTCCEEEESS
T ss_pred HHHHHHcCCCEEEEeCCChH--HHH-HHHHHHHHCCCcEEEecC
Confidence 445555666655554 3322 111 233455678999987754
No 436
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=27.29 E-value=1.2e+02 Score=21.13 Aligned_cols=42 Identities=7% Similarity=-0.053 Sum_probs=24.7
Q ss_pred HHHHHHHh--CCceEEEEeC------CCCchhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQR--KTIMLCIFAG------DVTPIEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~--gka~lViiA~------D~sp~~~~~~l~~lc~~~~IP~~~ 45 (91)
+..+++++ ....++++.+ -+-+.+-...+.++|+++++.++.
T Consensus 172 ~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 221 (409)
T 4eu1_A 172 GMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFV 221 (409)
T ss_dssp HHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 45566654 3345555422 111223456689999999997763
No 437
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=27.21 E-value=71 Score=24.34 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=29.1
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEe
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
.+..+.|.+.+--++++..-+........+..+++..++|++..
T Consensus 198 ~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t 241 (566)
T 1ozh_A 198 DQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTST 241 (566)
T ss_dssp HHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEEC
T ss_pred HHHHHHHHcCCCeEEEECCCcccccHHHHHHHHHHHHCCCEEEc
Confidence 45566677766555555544432244567899999999999864
No 438
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=27.14 E-value=50 Score=21.87 Aligned_cols=65 Identities=9% Similarity=0.128 Sum_probs=41.1
Q ss_pred hhHHhhHHHHHhcCCCCEEEeCCHh--HHhhHhCCCCceEEEEEecCchHHHHHHHHHHHhhcCCCC
Q psy6265 26 IEIMCHLPAVCEDKDIPYCYVPSKK--DIGEALGRKKPCICVIVKSTESVAELYEEVKQEIGALPVT 90 (91)
Q Consensus 26 ~~~~~~l~~lc~~~~IP~~~~~sk~--eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (91)
.++...+...|++.++.+.+..|.. +|=.++.......-+++-.++-|+..==-|...+..++.|
T Consensus 29 ~di~~~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~P 95 (154)
T 1uqr_A 29 SDIEQHLQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVAIRDALLAVSIP 95 (154)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHHHHHHHHhCCCC
Confidence 3677888889999999887777654 4544444333335677888888874333344444444444
No 439
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=27.05 E-value=1.2e+02 Score=19.59 Aligned_cols=39 Identities=5% Similarity=0.100 Sum_probs=21.1
Q ss_pred HHHHHHhCCceEEEE-eCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 5 VQGPLQRKTIMLCIF-AGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 5 v~kai~~gka~lVii-A~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
..+.+..+++.-+|+ ..+.+. .. ...+.+.+||++.+.+
T Consensus 51 ~~~~l~~~~vdgii~~~~~~~~-~~----~~~l~~~~iPvV~~~~ 90 (275)
T 3d8u_A 51 LLSTFLESRPAGVVLFGSEHSQ-RT----HQLLEASNTPVLEIAE 90 (275)
T ss_dssp HHHHHHTSCCCCEEEESSCCCH-HH----HHHHHHHTCCEEEESS
T ss_pred HHHHHHhcCCCEEEEeCCCCCH-HH----HHHHHhCCCCEEEEee
Confidence 344555555554444 444433 22 2334567999987654
No 440
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=27.04 E-value=1.3e+02 Score=19.51 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=37.1
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHh---HHhhHhCC
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKK---DIGEALGR 58 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~---eLG~a~G~ 58 (91)
+++..+.|.+-.+.+||.-..+++. .. .++.++||..+.--++. .|.+++|-
T Consensus 67 l~~~v~kI~~~g~nVVl~~k~I~d~--a~---~~l~k~gI~~vr~v~~~dleria~atGa 121 (178)
T 1gml_A 67 IHQLCEDIIQLKPDVVITEKGISDL--AQ---HYLMRANVTAIRRVRKTDNNRIARACGA 121 (178)
T ss_dssp HHHHHHHHHTTCCSEEEESSCBCHH--HH---HHHHHTTCEEECCCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhcCCcEEEECCcccHH--HH---HHHHHCCCEEEecCCHHHHHHHHHHhCC
Confidence 3566778888889999999988773 33 35578999888765555 55666663
No 441
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=27.03 E-value=64 Score=23.13 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=25.5
Q ss_pred CCCchhHHhhHHHHHhcCCCCEEEeCC--HhHHhhHh
Q psy6265 22 DVTPIEIMCHLPAVCEDKDIPYCYVPS--KKDIGEAL 56 (91)
Q Consensus 22 D~sp~~~~~~l~~lc~~~~IP~~~~~s--k~eLG~a~ 56 (91)
++++ .....+..+++..|||++..+. -.+|+...
T Consensus 125 ~vt~-~~~~~~~~lL~~~gi~~i~apgeAEA~lA~la 160 (336)
T 1rxw_A 125 RVDE-YIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMA 160 (336)
T ss_dssp CCCH-HHHHHHHHHHHHTTCCEEECSSCHHHHHHHHH
T ss_pred cCCH-HHHHHHHHHHHhCCCCEEEcCchHHHHHHHHH
Confidence 4555 4567788999999999998886 33677666
No 442
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=27.01 E-value=37 Score=20.53 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=12.5
Q ss_pred CCCCEEEeCCHhHH
Q psy6265 39 KDIPYCYVPSKKDI 52 (91)
Q Consensus 39 ~~IP~~~~~sk~eL 52 (91)
.++|++.+.+|.+|
T Consensus 117 ~~~p~ilv~nK~Dl 130 (182)
T 1ky3_A 117 ETFPFVILGNKIDA 130 (182)
T ss_dssp TTCCEEEEEECTTS
T ss_pred CCCcEEEEEECCcc
Confidence 68999999998887
No 443
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=26.96 E-value=1.5e+02 Score=20.04 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=22.0
Q ss_pred HHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 6 QGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 6 ~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
++.+...++.-+|+... ++.... .....+.+.+||++.+.+
T Consensus 55 i~~l~~~~vdgiIi~~~-~~~~~~-~~~~~~~~~~iPvV~~~~ 95 (325)
T 2x7x_A 55 VHYFMDEGVDLLIISAN-EAAPMT-PIVEEAYQKGIPVILVDR 95 (325)
T ss_dssp HHHHHHTTCSEEEECCS-SHHHHH-HHHHHHHHTTCCEEEESS
T ss_pred HHHHHHcCCCEEEEeCC-CHHHHH-HHHHHHHHCCCeEEEeCC
Confidence 44444555666666542 221222 233455678999987654
No 444
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=26.93 E-value=89 Score=17.50 Aligned_cols=42 Identities=10% Similarity=0.070 Sum_probs=27.0
Q ss_pred hhHHHHHhcCCC-CE-EEeCCHhHHhhHhCCCCceEEEEEecCc
Q psy6265 30 CHLPAVCEDKDI-PY-CYVPSKKDIGEALGRKKPCICVIVKSTE 71 (91)
Q Consensus 30 ~~l~~lc~~~~I-P~-~~~~sk~eLG~a~G~~~~~~v~~i~~~~ 71 (91)
..+..+.+++++ ++ +......++.+..|....-++.+++..|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G 115 (138)
T 4evm_A 72 ADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEG 115 (138)
T ss_dssp HHHHHHHTTCCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTC
T ss_pred HHHHHHHhhcCCCCeeEEECcchHHHHHcCcccCCeEEEECCCC
Confidence 445666777776 43 2344566899999987555566776544
No 445
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=26.87 E-value=85 Score=17.21 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=17.2
Q ss_pred hHHHHHhcCCCCEEEeC-C----------HhHHhhHhCCC
Q psy6265 31 HLPAVCEDKDIPYCYVP-S----------KKDIGEALGRK 59 (91)
Q Consensus 31 ~l~~lc~~~~IP~~~~~-s----------k~eLG~a~G~~ 59 (91)
+...+.++++|||..+. + +++|-+..|..
T Consensus 19 ~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~ 58 (87)
T 1aba_A 19 NAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRD 58 (87)
T ss_dssp HHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCC
Confidence 35556677888875432 1 13566666765
No 446
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=26.84 E-value=38 Score=23.12 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=28.0
Q ss_pred HHHHHHHhCCc-eEEEEeCCCCch-hHHhhHHHHHhcCCCCEEEeCCHhHH
Q psy6265 4 TVQGPLQRKTI-MLCIFAGDVTPI-EIMCHLPAVCEDKDIPYCYVPSKKDI 52 (91)
Q Consensus 4 ev~kai~~gka-~lViiA~D~sp~-~~~~~l~~lc~~~~IP~~~~~sk~eL 52 (91)
.+..+++.-.+ -+|+-+.+.+.. .-...+.......++|++.+.+|.+|
T Consensus 160 ~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl 210 (315)
T 1jwy_B 160 MVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDL 210 (315)
T ss_dssp HHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTS
T ss_pred HHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCccc
Confidence 45556665553 334434332211 11124666667789999999888775
No 447
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=26.75 E-value=1.2e+02 Score=18.91 Aligned_cols=70 Identities=6% Similarity=-0.059 Sum_probs=34.9
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCch
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTES 72 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~ 72 (91)
.+....++.....+||+--+....+-...+..+.+....|++.+.+..+-..+..--...+..++..+-+
T Consensus 48 ~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~ 117 (205)
T 1s8n_A 48 QEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFS 117 (205)
T ss_dssp HHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCC
T ss_pred HHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCC
Confidence 3556677777788888875543222222233333445568877654433322222112334445544433
No 448
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=26.74 E-value=66 Score=21.81 Aligned_cols=42 Identities=10% Similarity=0.145 Sum_probs=26.8
Q ss_pred HHHHHHHh-----CCceEEEEeCCCCc-------hhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQR-----KTIMLCIFAGDVTP-------IEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~-----gka~lViiA~D~sp-------~~~~~~l~~lc~~~~IP~~~ 45 (91)
++.++|.. .+.++|++.+=-+| .+-...+.++|++++++++.
T Consensus 118 ~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~ 171 (347)
T 1jg8_A 118 DVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHI 171 (347)
T ss_dssp HHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEe
Confidence 34455554 26888888533222 12346788999999998764
No 449
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=26.70 E-value=1e+02 Score=18.87 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=38.5
Q ss_pred eEEEEeCCCCch--hHHhhHHHHHhcCCCCEEEeCCHhHHhh-------------HhCCCCceEEEEE--ecCchHHHHH
Q psy6265 15 MLCIFAGDVTPI--EIMCHLPAVCEDKDIPYCYVPSKKDIGE-------------ALGRKKPCICVIV--KSTESVAELY 77 (91)
Q Consensus 15 ~lViiA~D~sp~--~~~~~l~~lc~~~~IP~~~~~sk~eLG~-------------a~G~~~~~~v~~i--~~~~~~~~~~ 77 (91)
..+++.-|++.. .....+..+....++|++.+.+|.+|-. .++......+.-+ ..+....+.+
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 186 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAW 186 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHH
Confidence 455555454321 1122355666778999999988876532 2443222222222 2344557777
Q ss_pred HHHHHHhh
Q psy6265 78 EEVKQEIG 85 (91)
Q Consensus 78 ~~~~~~~~ 85 (91)
+.|.+.++
T Consensus 187 ~~l~~~l~ 194 (195)
T 1svi_A 187 GAIKKMIN 194 (195)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 77776654
No 450
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=26.63 E-value=68 Score=23.01 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=28.3
Q ss_pred HHHHHHH---hCCceEEEEeCC------CC-chhHHhhHHHHHhcCCCCEEEe
Q psy6265 4 TVQGPLQ---RKTIMLCIFAGD------VT-PIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 4 ev~kai~---~gka~lViiA~D------~s-p~~~~~~l~~lc~~~~IP~~~~ 46 (91)
+..+.++ ..+..+||+-.. .- +.+....|.++|+++++.++.-
T Consensus 203 ~le~~l~~~~~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~D 255 (452)
T 3n5m_A 203 EVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISD 255 (452)
T ss_dssp HHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 4455555 355677777654 11 3355678999999999988753
No 451
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=26.62 E-value=64 Score=18.12 Aligned_cols=20 Identities=5% Similarity=0.077 Sum_probs=12.2
Q ss_pred HHHHHHHhCCceEEEEeCCC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDV 23 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~ 23 (91)
+....+++....++|+--+.
T Consensus 38 ~a~~~~~~~~~dlvl~D~~l 57 (124)
T 1srr_A 38 QALDIVTKERPDLVLLDMKI 57 (124)
T ss_dssp HHHHHHHHHCCSEEEEESCC
T ss_pred HHHHHHhccCCCEEEEecCC
Confidence 45555666667777775544
No 452
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=26.58 E-value=77 Score=16.66 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=16.4
Q ss_pred hHHHHHhcCCCCEEEeC--C----HhHHhhHhCCC
Q psy6265 31 HLPAVCEDKDIPYCYVP--S----KKDIGEALGRK 59 (91)
Q Consensus 31 ~l~~lc~~~~IP~~~~~--s----k~eLG~a~G~~ 59 (91)
.+..+-++++|++..+. . +.+|.+..|..
T Consensus 16 ~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~ 50 (82)
T 1fov_A 16 RAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRT 50 (82)
T ss_dssp HHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSC
T ss_pred HHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCC
Confidence 34455567788876543 2 23466666653
No 453
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=26.56 E-value=96 Score=17.75 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=38.5
Q ss_pred hHHHHHHHh-CCceEEEEeCCCCchhHHhhHHHHHh-cCCCCEEEeC-CHhHHhhHhCCCCceEEEEEecCchHHHHHHH
Q psy6265 3 STVQGPLQR-KTIMLCIFAGDVTPIEIMCHLPAVCE-DKDIPYCYVP-SKKDIGEALGRKKPCICVIVKSTESVAELYEE 79 (91)
Q Consensus 3 kev~kai~~-gka~lViiA~D~sp~~~~~~l~~lc~-~~~IP~~~~~-sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~ 79 (91)
.+....+++ +...++|+--+....+-...+..+.+ ..++|++.+. +..+... .... +..++..+-+.++....
T Consensus 49 ~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~---~~~~-~~~~l~KP~~~~~L~~~ 124 (138)
T 2b4a_A 49 SAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIE---SSEH-NLSYLQKPFAISELRAA 124 (138)
T ss_dssp HHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCC---CSSS-CEEEEESSCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCHHH---HHHH-HHheeeCCCCHHHHHHH
Confidence 345556666 67888888765532222222222322 2368887665 4333221 1111 55566666555555555
Q ss_pred HHHHhh
Q psy6265 80 VKQEIG 85 (91)
Q Consensus 80 ~~~~~~ 85 (91)
+...++
T Consensus 125 i~~~~~ 130 (138)
T 2b4a_A 125 IDYHKP 130 (138)
T ss_dssp HHHTCC
T ss_pred HHHHHH
Confidence 544443
No 454
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=26.45 E-value=1.6e+02 Score=22.69 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=44.8
Q ss_pred ceEEEEeCCCCc------hhHHhhHHH---------HHhcCCCCEEEeC-----CHhHHhhHhCCCCce-EEEEEecCch
Q psy6265 14 IMLCIFAGDVTP------IEIMCHLPA---------VCEDKDIPYCYVP-----SKKDIGEALGRKKPC-ICVIVKSTES 72 (91)
Q Consensus 14 a~lViiA~D~sp------~~~~~~l~~---------lc~~~~IP~~~~~-----sk~eLG~a~G~~~~~-~v~~i~~~~~ 72 (91)
.+.|||-.|..+ ......+.. .+++.+|.+..++ +..+|-+........ -+-.+.+..+
T Consensus 356 ~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~ 435 (741)
T 3hrz_D 356 RHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMEN 435 (741)
T ss_dssp EEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHH
T ss_pred CeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHH
Confidence 567888888733 222232322 4466778766542 467888877765433 2445566667
Q ss_pred HHHHHHHHHHHhhc
Q psy6265 73 VAELYEEVKQEIGA 86 (91)
Q Consensus 73 ~~~~~~~~~~~~~~ 86 (91)
..+.|+.+++.+..
T Consensus 436 L~~~~~~l~~~~~~ 449 (741)
T 3hrz_D 436 LEDVFYQMIDESQS 449 (741)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHhhccccc
Confidence 78888888877543
No 455
>2np0_B Synaptotagmin-2; botulinum, neurotoxin, synaptotagamin, receptor, hydrolase; 2.62A {Mus musculus}
Probab=26.45 E-value=49 Score=15.20 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHhhcCCCC
Q psy6265 72 SVAELYEEVKQEIGALPVT 90 (91)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~ 90 (91)
.++..-+++..+++++|+|
T Consensus 7 ~~~~~k~kf~nel~kiplp 25 (26)
T 2np0_B 7 MFAKLKEKFFNEINKXXXX 25 (26)
T ss_pred HHHHHHHHHHHHHHhhhcC
Confidence 3566666777788888876
No 456
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=26.41 E-value=67 Score=22.99 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=26.6
Q ss_pred HHHHHHHh---CCceEEEEeCC-------CCchhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQR---KTIMLCIFAGD-------VTPIEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~---gka~lViiA~D-------~sp~~~~~~l~~lc~~~~IP~~~ 45 (91)
+..+.|++ ++..+|++-.. ..+.+....|.++|+++++.++.
T Consensus 207 ~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~ 258 (449)
T 3a8u_X 207 ELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVF 258 (449)
T ss_dssp HHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEE
Confidence 34455653 45666665432 11234567899999999998774
No 457
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=26.40 E-value=93 Score=17.50 Aligned_cols=75 Identities=9% Similarity=0.042 Sum_probs=36.6
Q ss_pred hHHHHHHHhCCceEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeCCH---hHHhhHhCCCCceEEEEEecCchHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVPSK---KDIGEALGRKKPCICVIVKSTESVAEL 76 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~sk---~eLG~a~G~~~~~~v~~i~~~~~~~~~ 76 (91)
.+....+++....+||+--+... .++...+.. ...++|++.+.+. ...-++... .+...+..+-+.++.
T Consensus 37 ~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~--~~~~~~ii~~s~~~~~~~~~~~~~~---ga~~~l~Kp~~~~~l 111 (126)
T 1dbw_A 37 EAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGD--LKINIPSIVITGHGDVPMAVEAMKA---GAVDFIEKPFEDTVI 111 (126)
T ss_dssp HHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHH--TTCCCCEEEEECTTCHHHHHHHHHT---TCSEEEESSCCHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHh--cCCCCCEEEEECCCCHHHHHHHHHh---CHHHheeCCCCHHHH
Confidence 34556667777788887654422 223333321 1246888765432 233333321 233455555554444
Q ss_pred HHHHHH
Q psy6265 77 YEEVKQ 82 (91)
Q Consensus 77 ~~~~~~ 82 (91)
.+.+..
T Consensus 112 ~~~i~~ 117 (126)
T 1dbw_A 112 IEAIER 117 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 458
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=26.36 E-value=1.2e+02 Score=18.76 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=17.0
Q ss_pred HHHHHhcCCCCEEEeCCHhHHhh
Q psy6265 32 LPAVCEDKDIPYCYVPSKKDIGE 54 (91)
Q Consensus 32 l~~lc~~~~IP~~~~~sk~eLG~ 54 (91)
+...+...++|++.+.+|.+|-.
T Consensus 124 i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 124 LDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp HHHHHTTSCCCEEEEEECGGGGG
T ss_pred HHHhhCCCCCcEEEEEECccccc
Confidence 33444457999999999988854
No 459
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=26.23 E-value=34 Score=20.66 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=14.4
Q ss_pred HhcCCCCEEEeCCHhHHh
Q psy6265 36 CEDKDIPYCYVPSKKDIG 53 (91)
Q Consensus 36 c~~~~IP~~~~~sk~eLG 53 (91)
....++|++.+.+|.+|-
T Consensus 110 ~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 110 KDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp HTSSCCCEEEEEECGGGG
T ss_pred cCCCCCCEEEEEECcccc
Confidence 345689999999988874
No 460
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=26.15 E-value=1e+02 Score=18.02 Aligned_cols=46 Identities=4% Similarity=0.065 Sum_probs=26.7
Q ss_pred hHHHHHHHhCCc-eEEEEeCCCCc---hhHHhhHHHHHhcCCCCEEEeCCHh
Q psy6265 3 STVQGPLQRKTI-MLCIFAGDVTP---IEIMCHLPAVCEDKDIPYCYVPSKK 50 (91)
Q Consensus 3 kev~kai~~gka-~lViiA~D~sp---~~~~~~l~~lc~~~~IP~~~~~sk~ 50 (91)
.+....+++++. .+||+--+... .++...+.. ...++|++.+.+..
T Consensus 37 ~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~--~~~~~~ii~~s~~~ 86 (151)
T 3kcn_A 37 PEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARL--ISPNSVYLMLTGNQ 86 (151)
T ss_dssp HHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHH--HCSSCEEEEEECGG
T ss_pred HHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHh--cCCCcEEEEEECCC
Confidence 456677777764 88888765432 233333332 23568887665544
No 461
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=26.09 E-value=71 Score=23.37 Aligned_cols=43 Identities=7% Similarity=0.186 Sum_probs=27.4
Q ss_pred HHHHHHHh--CCceEEEEeC----CC----CchhHHhhHHHHHhcCCCCEEEe
Q psy6265 4 TVQGPLQR--KTIMLCIFAG----DV----TPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 4 ev~kai~~--gka~lViiA~----D~----sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
+..++|++ .+..+||+-. .. .+......+.++|+++++.++.-
T Consensus 222 ~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~D 274 (457)
T 3tfu_A 222 AFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFD 274 (457)
T ss_dssp HHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 34455553 4566676655 11 02255678999999999988753
No 462
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=26.08 E-value=80 Score=23.26 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=41.5
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhH---------hCCCCceEEEEEecCchHH
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEA---------LGRKKPCICVIVKSTESVA 74 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a---------~G~~~~~~v~~i~~~~~~~ 74 (91)
++..+++.-.+-++++-...+.......+..+.++.++|++.+.+|.++-.. +|..... ...-..+....
T Consensus 95 ~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~-~iSA~~g~gv~ 173 (456)
T 4dcu_A 95 QAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPY-PISGTHGLGLG 173 (456)
T ss_dssp HHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEE-ECCTTTCTTHH
T ss_pred HHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceE-EeecccccchH
Confidence 4555566554444444332222233445667777899999999998886432 1221111 01112234457
Q ss_pred HHHHHHHHHhhc
Q psy6265 75 ELYEEVKQEIGA 86 (91)
Q Consensus 75 ~~~~~~~~~~~~ 86 (91)
+.++.+.+.+..
T Consensus 174 ~L~~~i~~~l~~ 185 (456)
T 4dcu_A 174 DLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHTTGGG
T ss_pred HHHHHHHhhccc
Confidence 778888776653
No 463
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=26.03 E-value=65 Score=22.87 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=26.6
Q ss_pred HHHHHHHh---CCceEEEEeCCCC--------chhHHhhHHHHHhcCCCCEEEe
Q psy6265 4 TVQGPLQR---KTIMLCIFAGDVT--------PIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 4 ev~kai~~---gka~lViiA~D~s--------p~~~~~~l~~lc~~~~IP~~~~ 46 (91)
+..+.+++ ....+|++-..-+ +.+....|.++|+++++.++.-
T Consensus 178 ~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D 231 (430)
T 3i4j_A 178 GLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIAD 231 (430)
T ss_dssp HHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 34455653 4555666644322 2233577999999999987753
No 464
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=25.94 E-value=1.2e+02 Score=20.69 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=26.4
Q ss_pred HHHHHHHhCCceEEEEeCCCCc------hhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTP------IEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp------~~~~~~l~~lc~~~~IP~~~ 45 (91)
+..++++.+ .++|++.+=-+| .+-...+.++|++++++++.
T Consensus 142 ~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 188 (377)
T 3fdb_A 142 DVEKGFQAG-ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLV 188 (377)
T ss_dssp HHHHHHHTT-CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 455666654 667777543222 12356788899999998874
No 465
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=25.91 E-value=1.3e+02 Score=20.12 Aligned_cols=40 Identities=10% Similarity=0.093 Sum_probs=24.4
Q ss_pred HHHHHHHhCC--ceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 4 TVQGPLQRKT--IMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 4 ev~kai~~gk--a~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
..+.++++|+ ..++.+-+|-+... ....|+++|||+..+.
T Consensus 16 aLi~~~~~~~~~~~I~~Vvs~~~~~~----~~~~A~~~gIp~~~~~ 57 (209)
T 1meo_A 16 ALIDSTREPNSSAQIDIVISNKAAVA----GLDKAERAGIPTRVIN 57 (209)
T ss_dssp HHHHHHHSTTCSCEEEEEEESSTTCH----HHHHHHHTTCCEEECC
T ss_pred HHHHHHhcCCCCcEEEEEEeCCCChH----HHHHHHHcCCCEEEEC
Confidence 4455666664 56655555532211 3478999999997543
No 466
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=25.87 E-value=1.2e+02 Score=21.86 Aligned_cols=43 Identities=7% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHHHHHhCCceEEEEeCCCC-------chhHHhhHHHHHhcCCCCEEEe
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVT-------PIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~s-------p~~~~~~l~~lc~~~~IP~~~~ 46 (91)
+..++++..+..+|++-..-+ +.+....+.++|+++++.++.-
T Consensus 203 ~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D 252 (433)
T 1z7d_A 203 ALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVAD 252 (433)
T ss_dssp HHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 445566556677777643211 1234677999999999988753
No 467
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=25.72 E-value=1.5e+02 Score=19.79 Aligned_cols=78 Identities=19% Similarity=0.055 Sum_probs=42.3
Q ss_pred HHhCCceEEEEeCCCCchhHHhhHHHHHhcCC-CCEEEeCCHhHHhhHhCCCC-----------ceEEEEEecCchHHHH
Q psy6265 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKD-IPYCYVPSKKDIGEALGRKK-----------PCICVIVKSTESVAEL 76 (91)
Q Consensus 9 i~~gka~lViiA~D~sp~~~~~~l~~lc~~~~-IP~~~~~sk~eLG~a~G~~~-----------~~~v~~i~~~~~~~~~ 76 (91)
+..+.+..+++--|++...-...+.....+.+ +|++.+.+|.+|-..-+... +..-..-..+....+.
T Consensus 77 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l 156 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEEL 156 (271)
T ss_dssp HHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHH
T ss_pred hhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHH
Confidence 34466777777777764322222333334455 99999998887654333211 1111112234455677
Q ss_pred HHHHHHHhhc
Q psy6265 77 YEEVKQEIGA 86 (91)
Q Consensus 77 ~~~~~~~~~~ 86 (91)
++.+.+.++.
T Consensus 157 ~~~i~~~~~~ 166 (271)
T 3k53_A 157 KRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 7777766553
No 468
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=25.64 E-value=1.2e+02 Score=20.80 Aligned_cols=40 Identities=5% Similarity=-0.003 Sum_probs=25.5
Q ss_pred HHHHHHhCCceEEEEeCCCC------chhHHhhHHHHHhcCCCCEEE
Q psy6265 5 VQGPLQRKTIMLCIFAGDVT------PIEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~s------p~~~~~~l~~lc~~~~IP~~~ 45 (91)
..++++ .+.++|++.+=-+ |.+-...+.++|++++++++.
T Consensus 147 l~~~l~-~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~ 192 (375)
T 3op7_A 147 LRQLIR-PTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILS 192 (375)
T ss_dssp HHHHCC-TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHhhc-cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 334443 4678888762212 223357799999999998774
No 469
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=25.63 E-value=89 Score=20.38 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=22.9
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHH-HHhcCCCCEEEeCC
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPA-VCEDKDIPYCYVPS 48 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~-lc~~~~IP~~~~~s 48 (91)
+.++.+..+++.-+|+.. .++ + ... .+.+.+||++.+.+
T Consensus 55 ~~~~~l~~~~~dgiIi~~-~~~-~----~~~~~l~~~~iPvV~~~~ 94 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTA-FNE-N----IIENTLTDHHIPFVFIDR 94 (277)
T ss_dssp HHHHHHHHTTCSEEEECG-GGH-H----HHHHHHHHC-CCEEEGGG
T ss_pred HHHHHHHhCCCCEEEEec-CCh-H----HHHHHHHcCCCCEEEEec
Confidence 345556666666666665 223 2 233 55678999997654
No 470
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=25.54 E-value=1.5e+02 Score=19.46 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=20.6
Q ss_pred HHHHHhCCceEEEEe-CCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 6 QGPLQRKTIMLCIFA-GDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 6 ~kai~~gka~lViiA-~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
++.+...++.-+|+. .+.+. ... ....+.+.+||++.+.
T Consensus 51 ~~~l~~~~vdgiI~~~~~~~~--~~~-~~~~~~~~~iPvV~~~ 90 (290)
T 2fn9_A 51 FDAIIAAGYDAIIFNPTDADG--SIA-NVKRAKEAGIPVFCVD 90 (290)
T ss_dssp HHHHHHTTCSEEEECCSCTTT--THH-HHHHHHHTTCCEEEES
T ss_pred HHHHHHcCCCEEEEecCChHH--HHH-HHHHHHHCCCeEEEEe
Confidence 444445556555554 34322 112 3344567899988665
No 471
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=25.50 E-value=95 Score=24.40 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=32.5
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDI 52 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eL 52 (91)
.++..+++.-..-++++...-....-...+...+...++|++.+.+|.++
T Consensus 89 ~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 89 GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCch
Confidence 45677777766666666543222122345677788899999888777654
No 472
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=25.26 E-value=68 Score=22.26 Aligned_cols=41 Identities=10% Similarity=0.215 Sum_probs=26.7
Q ss_pred HHHHHHhCCceEEEEeCCCC-------chhHHhhHHHHHhcCCCCEEEe
Q psy6265 5 VQGPLQRKTIMLCIFAGDVT-------PIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~s-------p~~~~~~l~~lc~~~~IP~~~~ 46 (91)
..++++ .+.++|++..=-+ +.+....|.++|++++++++.-
T Consensus 175 l~~~l~-~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~D 222 (392)
T 3ruy_A 175 LKAAIT-PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVAD 222 (392)
T ss_dssp HHHHCC-TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHhc-cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 334444 6788888864221 2233577999999999987753
No 473
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=25.25 E-value=53 Score=19.43 Aligned_cols=26 Identities=15% Similarity=0.003 Sum_probs=22.1
Q ss_pred eEEEEeCCCCchhHHhhHHHHHhcCC
Q psy6265 15 MLCIFAGDVTPIEIMCHLPAVCEDKD 40 (91)
Q Consensus 15 ~lViiA~D~sp~~~~~~l~~lc~~~~ 40 (91)
-+++++=|++......++...|+.+|
T Consensus 4 M~vlV~YDI~~~krr~kv~k~l~~yG 29 (91)
T 3exc_X 4 MKLLVVYDVSDDSKRNKLANNLKKLG 29 (91)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHTT
T ss_pred eEEEEEEeCCCchHHHHHHHHHHHhC
Confidence 57899999985466788999999998
No 474
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=25.21 E-value=1.7e+02 Score=22.62 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=36.7
Q ss_pred hHHHHHHHhCCceEEEE-eCCCCchh---HHhhHHHHHhcCCCCEEEeCCHhHHhhHhCC
Q psy6265 3 STVQGPLQRKTIMLCIF-AGDVTPIE---IMCHLPAVCEDKDIPYCYVPSKKDIGEALGR 58 (91)
Q Consensus 3 kev~kai~~gka~lVii-A~D~sp~~---~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~ 58 (91)
.++.++++.| +.+|-+ ..|.+..+ ....+..+|+++++|++ +.+.-+|-.++|-
T Consensus 29 ~~ve~al~~G-v~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~li-IND~~dlA~~~gA 86 (540)
T 3nl6_A 29 GQVEAGLQNG-VTLVQIREKDADTKFFIEEALQIKELCHAHNVPLI-INDRIDVAMAIGA 86 (540)
T ss_dssp HHHHHHHHTT-CSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEE-ECSCSHHHHHTTC
T ss_pred HHHHHHHHCC-CCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEE-EeCcHHHHHHcCC
Confidence 4566677777 666666 66666543 45567889999999975 4556677766664
No 475
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=24.98 E-value=8.1 Score=23.59 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=25.5
Q ss_pred CCHhHHhhHhCCCCceEEEEEe-------cCchHHHHHHHHHHHhh
Q psy6265 47 PSKKDIGEALGRKKPCICVIVK-------STESVAELYEEVKQEIG 85 (91)
Q Consensus 47 ~sk~eLG~a~G~~~~~~v~~i~-------~~~~~~~~~~~~~~~~~ 85 (91)
.|-.++|+.+|++..+++-.+. .++++.+.++.|...++
T Consensus 51 ~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~d~~l~~~i~~l~~~l~ 96 (101)
T 3pvv_A 51 LSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIR 96 (101)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4678999999977665543332 34556666777666654
No 476
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=24.98 E-value=64 Score=22.86 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=27.1
Q ss_pred HHHHHHHh---CCceEEEEeCC---C----CchhHHhhHHHHHhcCCCCEEEe
Q psy6265 4 TVQGPLQR---KTIMLCIFAGD---V----TPIEIMCHLPAVCEDKDIPYCYV 46 (91)
Q Consensus 4 ev~kai~~---gka~lViiA~D---~----sp~~~~~~l~~lc~~~~IP~~~~ 46 (91)
+..+.+++ ++..+|++-.. . .+.+....|.++|+++++.++.-
T Consensus 191 ~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D 243 (433)
T 1zod_A 191 YAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILD 243 (433)
T ss_dssp HHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Confidence 34555654 56667776332 1 12244678999999999987753
No 477
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=24.96 E-value=1.4e+02 Score=18.96 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=31.0
Q ss_pred hhHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhH
Q psy6265 2 NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKD 51 (91)
Q Consensus 2 ~kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~e 51 (91)
++++.+.|+..-...-+...+.+. .+-.+| .-++..+|||+.+-+..|
T Consensus 24 A~~V~~~L~~~GiRvevD~~r~~e-~Lg~kI-R~a~~~kvPy~lVVG~kE 71 (130)
T 1v95_A 24 AESVGRKVRDLGMVVDLIFLNTEV-SLSQAL-EDVSRGGSPFAIVITQQH 71 (130)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTSS-CHHHHH-HHHHHHTCSEEEEECHHH
T ss_pred HHHHHHHHHHCCCEEEEecCCCCC-cHHHHH-HHHHHcCCCEEEEEechH
Confidence 467888888887777776642122 344444 456789999977554444
No 478
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=24.95 E-value=1e+02 Score=21.84 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=25.7
Q ss_pred HHHHHHHh--CCceEEEEeCCCC-------chhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQR--KTIMLCIFAGDVT-------PIEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~--gka~lViiA~D~s-------p~~~~~~l~~lc~~~~IP~~~ 45 (91)
+..+++++ .+..+||+-..-+ +.+....|.++|+++++.++.
T Consensus 191 ~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~ 241 (434)
T 3l44_A 191 TLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIY 241 (434)
T ss_dssp HHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 34455654 3455555543211 224467899999999998875
No 479
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=24.87 E-value=1.5e+02 Score=19.37 Aligned_cols=49 Identities=10% Similarity=-0.030 Sum_probs=28.5
Q ss_pred HHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCC---------HhHHhhHhCCC
Q psy6265 7 GPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPS---------KKDIGEALGRK 59 (91)
Q Consensus 7 kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~s---------k~eLG~a~G~~ 59 (91)
..|..-+--|||......+......+ ++.+||++.+.. -..||+++|++
T Consensus 51 E~i~~l~PDLIi~~~~~~~~~~~~~L----~~~gipvv~~~~~~~~~~~~~i~~lg~~lg~~ 108 (245)
T 1n2z_A 51 ERIVALKPDLVIAWRGGNAERQVDQL----ASLGIKVMWVDATSIEQIANALRQLAPWSPQP 108 (245)
T ss_dssp HHHHHTCCSEEEECTTTSCHHHHHHH----HHHTCCEEECCCCSHHHHHHHHHHHGGGCSCH
T ss_pred HHHhccCCCEEEEeCCCCcHHHHHHH----HHCCCcEEEeCCCCHHHHHHHHHHHHHHhCCH
Confidence 34445556777764322222333333 467899886542 23689999975
No 480
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=24.85 E-value=59 Score=23.83 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=44.0
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeCCHhHHhhH---------hCCCCceEEEEEecCchH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEA---------LGRKKPCICVIVKSTESV 73 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a---------~G~~~~~~v~~i~~~~~~ 73 (91)
.++..+++.-.+-++++-........-..+..+.+..++|++.+.+|.++-.. +|..... ...-..+...
T Consensus 74 ~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~-~iSA~~g~gv 152 (436)
T 2hjg_A 74 QQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPY-PISGTHGLGL 152 (436)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCE-ECBTTTTBTH
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeE-EEeCcCCCCh
Confidence 34555666655444444332211112234666677889999999988876432 2221111 1111234456
Q ss_pred HHHHHHHHHHhhc
Q psy6265 74 AELYEEVKQEIGA 86 (91)
Q Consensus 74 ~~~~~~~~~~~~~ 86 (91)
.+.++.+.+.++.
T Consensus 153 ~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 153 GDLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHHTGGG
T ss_pred HHHHHHHHHhcCc
Confidence 7888888887764
No 481
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=24.81 E-value=92 Score=16.95 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=23.4
Q ss_pred eEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC--C----HhHHhhHhCC
Q psy6265 15 MLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP--S----KKDIGEALGR 58 (91)
Q Consensus 15 ~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~--s----k~eLG~a~G~ 58 (91)
++++...+..|. -.++..+-++++|++..+. . .++|.+..|.
T Consensus 7 ~v~ly~~~~C~~--C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~ 54 (92)
T 2khp_A 7 DVIIYTRPGCPY--CARAKALLARKGAEFNEIDASATPELRAEMQERSGR 54 (92)
T ss_dssp CEEEEECTTCHH--HHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTS
T ss_pred cEEEEECCCChh--HHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC
Confidence 355555444452 2345666678889986543 2 2355556664
No 482
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=24.80 E-value=1.3e+02 Score=19.82 Aligned_cols=39 Identities=8% Similarity=-0.075 Sum_probs=21.6
Q ss_pred HHHHHHhCCceEEEEe-CCCCchhHHhhHHHHHhcCCCCEEEeCC
Q psy6265 5 VQGPLQRKTIMLCIFA-GDVTPIEIMCHLPAVCEDKDIPYCYVPS 48 (91)
Q Consensus 5 v~kai~~gka~lViiA-~D~sp~~~~~~l~~lc~~~~IP~~~~~s 48 (91)
.++.+..+++.-+|+. .+.++ .. ...+.+.+||++.+.+
T Consensus 59 ~~~~l~~~~vdgiIi~~~~~~~-~~----~~~l~~~~iPvV~~~~ 98 (290)
T 2rgy_A 59 AVRFLIGRDCDGVVVISHDLHD-ED----LDELHRMHPKMVFLNR 98 (290)
T ss_dssp HHHHHHHTTCSEEEECCSSSCH-HH----HHHHHHHCSSEEEESS
T ss_pred HHHHHHhcCccEEEEecCCCCH-HH----HHHHhhcCCCEEEEcc
Confidence 4455555666555554 44332 22 2234567999987654
No 483
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=24.65 E-value=1.1e+02 Score=20.27 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=20.8
Q ss_pred HHHHHHhCCceEEEEeC-CCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 5 VQGPLQRKTIMLCIFAG-DVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 5 v~kai~~gka~lViiA~-D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
.++.+...++.-+|+.. +.+. . .+...+.+.+||++.+.
T Consensus 68 ~~~~l~~~~vdgii~~~~~~~~-~---~~~~~~~~~~iPvV~~~ 107 (293)
T 2iks_A 68 CIEHLLQRQVDAIIVSTSLPPE-H---PFYQRWANDPFPIVALD 107 (293)
T ss_dssp HHHHHHHTTCSEEEECCSSCTT-C---HHHHTTTTSSSCEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCc-H---HHHHHHHhCCCCEEEEC
Confidence 34455555565555543 3222 1 12334567889988765
No 484
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=24.64 E-value=1.5e+02 Score=22.62 Aligned_cols=62 Identities=10% Similarity=0.029 Sum_probs=46.8
Q ss_pred HHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCC-EEEeCCHhHHhhHhCCCCceEEEEE
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIP-YCYVPSKKDIGEALGRKKPCICVIV 67 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP-~~~~~sk~eLG~a~G~~~~~~v~~i 67 (91)
|+..+..-|---.+++++-.++.+ ...+...|++.|.. ++.+.|.+||-+|+-.... .+++.
T Consensus 122 Qi~ea~~~GAD~ILLi~a~l~~~~-l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~lga~-iIGin 184 (452)
T 1pii_A 122 QIYLARYYQADACLLMLSVLDDDQ-YRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAK-VVGIN 184 (452)
T ss_dssp HHHHHHHTTCSEEEEETTTCCHHH-HHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCS-EEEEE
T ss_pred HHHHHHHcCCCEEEEEcccCCHHH-HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHCCCC-EEEEe
Confidence 666777888888888898887744 56688999999985 4679999999998766533 34443
No 485
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=30.45 E-value=16 Score=22.26 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=29.3
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEE-eCCHhHHhhHhCCCC--ceEEEEEecCc
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCY-VPSKKDIGEALGRKK--PCICVIVKSTE 71 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~--~~~v~~i~~~~ 71 (91)
..+.++.|..|-++ ..+..+.+++++++-. .....++.++.|... .-...+++..|
T Consensus 67 ~~~~vv~v~~d~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G 125 (159)
T 2ls5_A 67 ADFALIGIDRDEPL----EKVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREG 125 (159)
Confidence 34556666555433 2244556677776643 334557777777432 11244555544
No 486
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=24.53 E-value=55 Score=21.53 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=42.3
Q ss_pred chhHHhhHHHHHhcCCCCEEEeCCHh--HHhhHhCCCCce-EEEEEecCchHHHHHHHHHHHhhcCCCCC
Q psy6265 25 PIEIMCHLPAVCEDKDIPYCYVPSKK--DIGEALGRKKPC-ICVIVKSTESVAELYEEVKQEIGALPVTW 91 (91)
Q Consensus 25 p~~~~~~l~~lc~~~~IP~~~~~sk~--eLG~a~G~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 91 (91)
-.++...+...|++.++.+.+..|.. +|=.++...... .-+++-+++-|+..==.|...+..++.|+
T Consensus 26 l~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~ 95 (149)
T 2uyg_A 26 LEELEALCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSYALLDAIRAQPLPV 95 (149)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccHHHHHHHHhCCCCE
Confidence 34677888899999999988777654 555444433333 45677788877543334445555555553
No 487
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=24.51 E-value=56 Score=25.49 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=17.7
Q ss_pred HHHHHHHhCCceEEEEeCCCCch
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTPI 26 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp~ 26 (91)
..++.+.+..+.+||++.|+++.
T Consensus 233 ~~le~I~~~g~~lvIi~~~I~~~ 255 (546)
T 3rtk_A 233 PLLEKVIGAGKPLLIIAEDVEGE 255 (546)
T ss_dssp HHHHHHHTTTCCEEEEESEECHH
T ss_pred HHHHHHHhcCCCEEEEcCCCCHH
Confidence 34566666668999999999874
No 488
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=24.44 E-value=1.5e+02 Score=19.36 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=30.5
Q ss_pred HHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC--CHhH-HhhHhCCC
Q psy6265 5 VQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP--SKKD-IGEALGRK 59 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~--sk~e-LG~a~G~~ 59 (91)
..+.+++|+--.++..+|-.-......+...+.++++++..++ |... .-..+|.+
T Consensus 87 i~~~~~~g~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a~~g~p 144 (232)
T 2qbu_A 87 VAAELEDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRT 144 (232)
T ss_dssp HHHHHHTTCCEEEEESBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCC
T ss_pred HHHHHHCCCeEEEEeCCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHHHhCCC
Confidence 3444556653233333443222334556677888899998776 4443 34556665
No 489
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=24.38 E-value=58 Score=22.60 Aligned_cols=41 Identities=5% Similarity=0.057 Sum_probs=26.8
Q ss_pred HHHHHHHhCCceEEEEeCCCCc--hhHHhhHHHHHhcCCCCEEE
Q psy6265 4 TVQGPLQRKTIMLCIFAGDVTP--IEIMCHLPAVCEDKDIPYCY 45 (91)
Q Consensus 4 ev~kai~~gka~lViiA~D~sp--~~~~~~l~~lc~~~~IP~~~ 45 (91)
+..++++..+.++|++.+-..| .. ...+.++|++++++++.
T Consensus 154 ~l~~~l~~~~~~~v~~~~p~~~~~~~-l~~i~~l~~~~~~~li~ 196 (407)
T 2dkj_A 154 EVRRLALEHRPKVIVAGASAYPRFWD-FKAFREIADEVGAYLVV 196 (407)
T ss_dssp HHHHHHHHHCCSEEEECCSSCCSCCC-HHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhhcCCeEEEEeccccCCCCC-HHHHHHHHHHcCCEEEE
Confidence 4556666556788888432222 12 45688999999997764
No 490
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=24.37 E-value=1.4e+02 Score=20.26 Aligned_cols=40 Identities=8% Similarity=0.196 Sum_probs=25.4
Q ss_pred HHHHHHhCCceEEEEeCCCCchhHHhhHHHHHhcCCCCEEEeC
Q psy6265 5 VQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVP 47 (91)
Q Consensus 5 v~kai~~gka~lViiA~D~sp~~~~~~l~~lc~~~~IP~~~~~ 47 (91)
+.+.+.++++..||-... +. ....+...+++.+||++...
T Consensus 73 ~~~l~~~~~v~~iiG~~~-s~--~~~~~~~~~~~~~iP~i~~~ 112 (366)
T 3td9_A 73 AARAIDKEKVLAIIGEVA-SA--HSLAIAPIAEENKVPMVTPA 112 (366)
T ss_dssp HHHHHHTSCCSEEEECSS-HH--HHHHHHHHHHHTTCCEEESS
T ss_pred HHHHhccCCeEEEEccCC-ch--hHHHHHHHHHhCCCeEEecC
Confidence 445556666777664332 23 23456778899999998754
No 491
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=24.36 E-value=52 Score=18.31 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=36.2
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHh-cCCCCEEEeCCHhHHhhHhCCCCceEEEEEecCchHHHHHHHHH
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCE-DKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVK 81 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~-~~~IP~~~~~sk~eLG~a~G~~~~~~v~~i~~~~~~~~~~~~~~ 81 (91)
.+....+++....++|+--+....+-...+..+-+ ..++|++.+.+..+......--...+..++..+-+.++....+.
T Consensus 37 ~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 116 (124)
T 1dc7_A 37 NEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVE 116 (124)
T ss_dssp THHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHH
Confidence 34556666677778887655532221222222222 34688776654433222211112233344555544444444433
No 492
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=24.31 E-value=41 Score=20.33 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=26.0
Q ss_pred CCCCEEEeCCHhHHhh----------HhCCCCceEEEE--EecCchHHHHHHHHHHHhhc
Q psy6265 39 KDIPYCYVPSKKDIGE----------ALGRKKPCICVI--VKSTESVAELYEEVKQEIGA 86 (91)
Q Consensus 39 ~~IP~~~~~sk~eLG~----------a~G~~~~~~v~~--i~~~~~~~~~~~~~~~~~~~ 86 (91)
.++|++.+.+|.+|-. .+.......+.- ...+....+.|+.+.+.+.+
T Consensus 115 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 115 ESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 7899999988887631 110011111111 12344567777877776644
No 493
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=24.23 E-value=29 Score=20.26 Aligned_cols=27 Identities=11% Similarity=-0.127 Sum_probs=22.6
Q ss_pred EEEEeCCCCchhHHhhHHHHHhcCCCCE
Q psy6265 16 LCIFAGDVTPIEIMCHLPAVCEDKDIPY 43 (91)
Q Consensus 16 lViiA~D~sp~~~~~~l~~lc~~~~IP~ 43 (91)
+++++=|++. ....++...|+.++.++
T Consensus 2 ~vlv~YDI~~-kR~~kv~k~l~~yg~rv 28 (85)
T 2i0x_A 2 YIVVVYDVGV-ERVNKVKKFLRMHLNWV 28 (85)
T ss_dssp EEEEEEECCS-SSHHHHHHHHTTTSEEE
T ss_pred EEEEEeeCCh-HHHHHHHHHHHHhCccc
Confidence 6899999987 56788999999998765
No 494
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=24.18 E-value=99 Score=17.06 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=23.5
Q ss_pred hHHHHHHHhCCceEEEEeCCCCchhHHhhHHHHHh-cCCCCEEEeC
Q psy6265 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCE-DKDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~gka~lViiA~D~sp~~~~~~l~~lc~-~~~IP~~~~~ 47 (91)
.+....++.+...++++--+....+-...+..+-+ ..++|++.+.
T Consensus 34 ~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 79 (121)
T 2pl1_A 34 KEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLT 79 (121)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEE
T ss_pred HHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEe
Confidence 45666777777888887544322111122222222 3468877653
No 495
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=24.18 E-value=29 Score=21.93 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=12.0
Q ss_pred CCCCEEEeCCHhHH
Q psy6265 39 KDIPYCYVPSKKDI 52 (91)
Q Consensus 39 ~~IP~~~~~sk~eL 52 (91)
.++|++.+++|.+|
T Consensus 128 ~~~piilv~nK~Dl 141 (196)
T 3llu_A 128 PDMNFEVFIHKVDG 141 (196)
T ss_dssp TTCEEEEEEECGGG
T ss_pred CCCcEEEEEecccc
Confidence 48999999998885
No 496
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.14 E-value=1.2e+02 Score=17.83 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=17.1
Q ss_pred hHHHHHhcCCCCEEEeC--C----HhHHhhHh
Q psy6265 31 HLPAVCEDKDIPYCYVP--S----KKDIGEAL 56 (91)
Q Consensus 31 ~l~~lc~~~~IP~~~~~--s----k~eLG~a~ 56 (91)
+...+-++++|+|..+. . +++|....
T Consensus 29 ~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 29 DVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp HHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 46677788999986543 2 34566665
No 497
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=24.13 E-value=57 Score=20.32 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=13.1
Q ss_pred CCCCEEEeCCHhHHh
Q psy6265 39 KDIPYCYVPSKKDIG 53 (91)
Q Consensus 39 ~~IP~~~~~sk~eLG 53 (91)
.++|++.+.+|.+|-
T Consensus 126 ~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 126 RSIPALLLGNKLDMA 140 (187)
T ss_dssp CCCCEEEEEECGGGG
T ss_pred CCCCEEEEEECcchh
Confidence 689999999998874
No 498
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=24.12 E-value=1.2e+02 Score=23.27 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=35.1
Q ss_pred hHHHHHhcCCCCEEEeCCHhHHhhHhCCC----CceEEEEEecCchHHHHHHHHHHHh
Q psy6265 31 HLPAVCEDKDIPYCYVPSKKDIGEALGRK----KPCICVIVKSTESVAELYEEVKQEI 84 (91)
Q Consensus 31 ~l~~lc~~~~IP~~~~~sk~eLG~a~G~~----~~~~v~~i~~~~~~~~~~~~~~~~~ 84 (91)
.+..+|+.+++++..+.+.++|-.++..- .++.+=+..+.++....+..+.+.+
T Consensus 537 d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~~~~~~~~~~~~~~~ 594 (604)
T 2x7j_A 537 DFKHAAALYGGTYSCPASWDEFKTAYAPQADKPGLHLIEIKTDRQSRVQLHRDMLNEA 594 (604)
T ss_dssp CTHHHHHHTTCEEECCSSHHHHHHHCCCCCSSCCEEEEEEECCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCeEEecCCHHHHHHHHHHHHhCCCCEEEEEECCccccHHHHHHHHHHH
Confidence 46778999999999999999999988642 2333333344444444444444443
No 499
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=24.06 E-value=1.1e+02 Score=17.51 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=23.7
Q ss_pred hHHHHHHHh------CCceEEEEeCCCCchhHHhhHHHHHhc---CCCCEEEeC
Q psy6265 3 STVQGPLQR------KTIMLCIFAGDVTPIEIMCHLPAVCED---KDIPYCYVP 47 (91)
Q Consensus 3 kev~kai~~------gka~lViiA~D~sp~~~~~~l~~lc~~---~~IP~~~~~ 47 (91)
.+....+++ ....+||+--+....+-...+..+.+. .++|++.+.
T Consensus 43 ~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls 96 (143)
T 2qvg_A 43 NQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLT 96 (143)
T ss_dssp HHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEE
T ss_pred HHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEe
Confidence 355666665 667888887655322222222222222 578877654
No 500
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=24.01 E-value=99 Score=19.16 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=25.1
Q ss_pred CCceEEEEeCCCCchhHHhhHHHHHhcCCC-CEEEeC-CHhHHhhHhCCCC
Q psy6265 12 KTIMLCIFAGDVTPIEIMCHLPAVCEDKDI-PYCYVP-SKKDIGEALGRKK 60 (91)
Q Consensus 12 gka~lViiA~D~sp~~~~~~l~~lc~~~~I-P~~~~~-sk~eLG~a~G~~~ 60 (91)
..+.+|.|+.|. +.. +..+++++++ ++-.+. ...++.+..|...
T Consensus 74 ~~v~vv~Is~D~-~~~----~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 119 (175)
T 1xvq_A 74 SGATVLCVSKDL-PFA----QKRFCGAEGTENVMPASAFRDSFGEDYGVTI 119 (175)
T ss_dssp TTCEEEEEESSC-HHH----HTTCC------CEEEEECTTSSHHHHTTCBB
T ss_pred cCCEEEEEECCC-HHH----HHHHHHHcCCCCceEeeCCHHHHHHHhCCcc
Confidence 568888888874 322 3456677777 564433 3468888888753
Done!