RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6265
(91 letters)
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast,
His-TAG, RNA binding protein; 1.80A {Saccharomyces
cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A
3siv_A 1e7k_A
Length = 134
Score = 84.2 bits (208), Expect = 8e-23
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCI 63
L R I A D PIEI+ HLP +CEDK++PY +VPS+ +G A G +P I
Sbjct: 39 EATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVI 98
Query: 64 CVIVKSTES--VAELYEEVKQEIGALPV 89
+ + ++ + VK +I L +
Sbjct: 99 AASITTNDASAIKTQIYAVKDKIETLLI 126
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription
factor, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP:
d.79.3.1
Length = 135
Score = 83.8 bits (207), Expect = 1e-22
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCI 63
L R + + A D P+EI+ HLP VCEDK+ PY +V SK +G A G +P I
Sbjct: 48 EATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVSRPVI 107
Query: 64 CVIVKSTE--SVAELYEEVKQEIGALPV 89
+ S + S++ E+K +I + V
Sbjct: 108 AAAITSKDGSSLSSQITELKDQIEQILV 135
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA
binding protein, KINK T ribosomal protein; 1.81A
{Giardia lamblia}
Length = 122
Score = 80.7 bits (199), Expect = 2e-21
Identities = 27/84 (32%), Positives = 41/84 (48%)
Query: 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCI 63
+ R L I A D PIEI+ HLP CEDK +PY ++ SK +G A P I
Sbjct: 38 EALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNALGRACNVSVPTI 97
Query: 64 CVIVKSTESVAELYEEVKQEIGAL 87
+ +++ + E+ ++ AL
Sbjct: 98 VASIGKHDALGNVVAEIVGKVEAL 121
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX,
RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Length = 144
Score = 80.8 bits (199), Expect = 2e-21
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCI 63
L R + A D P+EI+ HLP +CEDK++PY +V SK+ +G A G +P I
Sbjct: 57 EATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVI 116
Query: 64 C--VIVKSTESVAELYEEVKQEIGALPV 89
V +K + + + ++Q I L V
Sbjct: 117 ACSVTIKEGSQLKQQIQSIQQSIERLLV 144
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome,
RNA binding protein; 1.56A {Aeropyrum pernix} SCOP:
d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D*
3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C
3lwv_C 3hjw_C* 2czw_A 1pxw_A
Length = 124
Score = 78.7 bits (194), Expect = 8e-21
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVK 68
++R L + A DV P EI+ HLP +C++K IPY YVPSKK +GEA G + V +
Sbjct: 40 VERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAII 99
Query: 69 STESVAELYEEVKQEIGALPVTW 91
L E+ +++ L
Sbjct: 100 EPGDAETLVREIVEKVKELRAKA 122
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP,
RNA binding protein; NMR {Saccharomyces cerevisiae} PDB:
2lbx_A
Length = 121
Score = 76.9 bits (189), Expect = 4e-20
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCI 63
V L++ L + AGD+ P +++ H+P +CED +PY ++PSK+D+G A K+P
Sbjct: 27 EVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTS 86
Query: 64 CVIV-----------KSTESVAELYEEVKQEIGAL 87
V + E E + EV +E+ AL
Sbjct: 87 VVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 121
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA
complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP:
d.79.3.1
Length = 119
Score = 76.4 bits (188), Expect = 7e-20
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCI 63
++R L A DV P EI+ HLP +CE+K++PY YV SK D+G A+G + PC
Sbjct: 34 ETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCA 93
Query: 64 CVIVKSTESVAELYEEVKQEIGALP 88
+ + + + + ++I L
Sbjct: 94 SAAIINEGELRKELGSLVEKIKGLQ 118
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F*
1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F*
1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F*
1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Length = 120
Score = 75.6 bits (186), Expect = 1e-19
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVK 68
++R + L A DV P EI+ H+P + ++K +P+ +V + D+G A G + V
Sbjct: 41 IERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVT 100
Query: 69 STESVAELYEEVKQEIGAL 87
E++ ++ L
Sbjct: 101 DAGEADADVEDIADKVEEL 119
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 75.4 bits (185), Expect = 1e-19
Identities = 20/81 (24%), Positives = 36/81 (44%)
Query: 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCI 63
V ++ K L + A DV PIE++ LPA+C+ +PY V K +G + +K +
Sbjct: 32 HVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAV 91
Query: 64 CVIVKSTESVAELYEEVKQEI 84
+ + ++ I
Sbjct: 92 AALTEVRAEDEAALAKLVSTI 112
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H
3o58_H 3o5h_H 3u5e_G 3u5i_G
Length = 256
Score = 75.8 bits (185), Expect = 2e-18
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCI 63
V ++ K L + A DV PIE++ LPA+C+ +PY V K +G + +K +
Sbjct: 138 HVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAV 197
Query: 64 CVIVKSTESVAELYEEVKQEIGA 86
+ + ++ I A
Sbjct: 198 AALTEVRAEDEAALAKLVSTIDA 220
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA
binding protein/structural protein complex; HET: EPE;
1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1
PDB: 1ra4_A* 1sds_A 3paf_A
Length = 120
Score = 69.9 bits (171), Expect = 2e-17
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCI 63
V ++R L I A DV P E++ HLP +CE+K IPY YV SK+D+G+A G +
Sbjct: 36 EVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAAS 95
Query: 64 CVIVKSTESVAELYEEVKQ 82
V + + EL +++
Sbjct: 96 SVAIINEGDAEELKVLIEK 114
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_F 4a1c_F 4a1e_F
Length = 255
Score = 72.7 bits (177), Expect = 3e-17
Identities = 17/84 (20%), Positives = 37/84 (44%)
Query: 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPC 62
+ + ++ K L + A DV PIE++ LP +C D+P+ +V K +G+ + +K
Sbjct: 130 NHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVKGKAALGKLVNKKTAT 189
Query: 63 ICVIVKSTESVAELYEEVKQEIGA 86
+ + ++ +
Sbjct: 190 AVALTEVRNEDKAKLQQFSELFKT 213
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 266
Score = 70.8 bits (172), Expect = 1e-16
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCI 63
TV ++ K L + A DV PIE++ LPA+C +PYC + K +G + RK
Sbjct: 142 TVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCTT 201
Query: 64 CVIVKSTESVAELYEEVKQEIGA 86
+ ++ + I
Sbjct: 202 VAFTQVNSEDKGALAKLVEAIRT 224
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_H
Length = 258
Score = 70.8 bits (172), Expect = 1e-16
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 3 STVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPC 62
+ V +++ L + A DV PIE++ LPA+C ++PYC V K +G + +K
Sbjct: 133 NHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTAS 192
Query: 63 ICVIVKSTESVAELYEEVKQEIGA 86
+ + + ++ + I A
Sbjct: 193 VLCLTTVKNEDKLEFSKILEAIKA 216
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex,
K-turn, L7AE-like, A member L7AE/L30E superfamily; HET:
SAM; 2.80A {Bacillus subtilis}
Length = 82
Score = 65.7 bits (161), Expect = 3e-16
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICV 65
L+R ++ + A D P + + ++ ED+ I V S K +G+A G + V
Sbjct: 23 LKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMKKLGKACGIEVGAAAV 78
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation;
3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Length = 126
Score = 59.7 bits (144), Expect = 2e-13
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRK--------- 59
++ K + A D + + A+C +I Y VP + +GE LG
Sbjct: 36 IEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLGHFTANAKGEIK 95
Query: 60 --KPCICVIVK-----STESVAELYEE 79
K C + ++ TE ++ E
Sbjct: 96 KVKGCSSLAIRKYAPEITEDEKKIIEG 122
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A;
translation, ribosome, ribosomal, ribosomal R ribosomal
protein, eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5g_M
Length = 143
Score = 43.7 bits (102), Expect = 4e-07
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 17/92 (18%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCED--KDIPYCYVPSKKDIGEALG--------- 57
L R +L + VT I+ + + D +P V K +GE G
Sbjct: 52 LTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGEWAGLGKIDREGN 111
Query: 58 --RKKPCICVIVK----STESVAELYEEVKQE 83
+ V+VK T+ ++ + E Q+
Sbjct: 112 ARKVVGASVVVVKNWGAETDELSMIMEHFSQQ 143
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn
binding, K-turn RNA, hypothetical R protein, RNA
binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Length = 101
Score = 41.9 bits (99), Expect = 1e-06
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIV 67
++ L + D + + C +PY V S+ +G ++G K+ + V V
Sbjct: 31 IRNARAKLVLLTEDASS-NTAKKVTDKCNYYKVPYKKVESRAVLGRSIG-KEARVVVAV 87
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Length = 101
Score = 39.6 bits (93), Expect = 1e-05
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVK 68
+Q + L I + D L C IP V +++ +G A+G K + + VK
Sbjct: 30 VQNGQVTLVILSSDAGI-HTKKKLLDKCGSYQIPVKVVGNRQMLGRAIG-KHERVVIGVK 87
Query: 69 S---TESVAELYEE 79
+ +A L +E
Sbjct: 88 DAGFSRKLAALIDE 101
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A
{Homo sapiens} PDB: 2zkr_6 1ysh_C
Length = 125
Score = 29.8 bits (67), Expect = 0.068
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIP-YCYVPSKKDIGEALGRKKPCICVIV 67
+++ L I A + P + + Y + ++G A G+ + +
Sbjct: 39 IRQGKAKLVILANN-CPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAI 97
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_F
Length = 190
Score = 28.6 bits (64), Expect = 0.13
Identities = 5/60 (8%), Positives = 12/60 (20%), Gaps = 2/60 (3%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIP-YCYVPSKKDIGEALGRKKPCICVIV 67
+ + + G +++ I G G + V
Sbjct: 38 FKHLNLDFQLLEGG-RKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYA 96
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation,
ribosome, ribosomal R ribosomal protein, STM1,
eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae}
PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 1ck2_A
1cn7_A 1nmu_B* 3jyw_2
Length = 105
Score = 28.6 bits (64), Expect = 0.14
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIP-YCYVPSKKDIGEALGRKKPCICVIV 67
L++ L I A + TP+ L Y + ++G A+G+ V +
Sbjct: 34 LRQGKSKLIIIAAN-TPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSI 92
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Length = 104
Score = 28.2 bits (63), Expect = 0.19
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIP-YCYVPSKKDIGEALGRKKPCICVIV 67
++ T L + + P + I + +V S ++G A G+ C + +
Sbjct: 34 IRNGTAKLVFISNN-CPTVRKSEIEYYASLAQISIHHFVGSNVELGTACGKYHRCSTMAI 92
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor,
ribonucleoprotein, structural genomics, NPPSFA; 1.90A
{Methanocaldococcus jannaschii}
Length = 110
Score = 27.5 bits (61), Expect = 0.39
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIP-YCYVPSKKDIGEALGRKKPCICVIV 67
++ L + AG+ P ++ + + +IP Y + + ++G G+ P ++V
Sbjct: 33 VKHGEGKLVVLAGN-IPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLV 91
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma;
beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Length = 167
Score = 27.3 bits (60), Expect = 0.60
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 12/70 (17%)
Query: 15 MLCIFAGDVT-PIEIMCH-----LPAVCEDKDIPYCYVPSKKDIGEALGRKKP------C 62
C+ A +I + A C + DI V + + +G +
Sbjct: 66 TFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGAGEEAGAPGDL 125
Query: 63 ICVIVKSTES 72
C+++ +
Sbjct: 126 HCILISNPNE 135
>1w41_A 50S ribosomal protein L30E; electrostatic interactions,
thermostability, protein engineering; 1.7A
{Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A
1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A
3n4z_A 2bo1_A
Length = 101
Score = 26.7 bits (59), Expect = 0.78
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIP-YCYVPSKKDIGEALGRKKPCICVIV 67
+ L I A + +I + IP Y + + ++G LGR + V
Sbjct: 28 AKMGGAKLIIVARN-ARPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAV 86
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A
{Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Length = 176
Score = 26.8 bits (60), Expect = 0.80
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 55 ALGRKKPCICVIVKSTESVAELYEEVKQEIGAL 87
+ +KP I V+ AE + E+G
Sbjct: 8 CMSGRKPIIGVMGPGKADTAENQLVMANELGKQ 40
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ,
RISC, slicer, RNAse H hydrolase-gene regulation complex;
2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10
PDB: 1z25_A 1z26_A
Length = 771
Score = 27.1 bits (59), Expect = 0.85
Identities = 10/64 (15%), Positives = 26/64 (40%)
Query: 26 IEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIG 85
++ + ED + + + + + K+ + I + +E +EE+K+ +
Sbjct: 438 LDFRGKEKVITEDLNSDKGIIEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRLF 497
Query: 86 ALPV 89
L V
Sbjct: 498 NLNV 501
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell
cycle; 1.70A {Mus musculus} PDB: 2wal_A
Length = 146
Score = 26.5 bits (58), Expect = 1.1
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 12/67 (17%)
Query: 15 MLCIFAGDVT-PIEIMCH-----LPAVCEDKDIPYCYVPSKKDIGEALGRK------KPC 62
C+ A D +I + A C + DI V + + +G
Sbjct: 45 TFCVLAADEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGSDEEGGAPGDL 104
Query: 63 ICVIVKS 69
C+++ +
Sbjct: 105 HCILISN 111
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 25.5 bits (57), Expect = 2.3
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 50 KDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIGAL 87
+ + E G + V + E V +L E VK++ G L
Sbjct: 63 QKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKL 100
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium
loti} PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 24.8 bits (55), Expect = 4.8
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 50 KDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIGAL 87
K ++G+K I + SV L+ E++ G +
Sbjct: 44 KAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGI 81
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 24.8 bits (55), Expect = 5.0
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 50 KDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIGAL 87
+ I + LG + + V + ES+ + + + E G +
Sbjct: 47 QAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGV 84
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 24.4 bits (54), Expect = 5.4
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 50 KDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIGAL 87
K+I LG+ + +S+ +L E ++E+ +
Sbjct: 65 KEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGI 102
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 24.4 bits (54), Expect = 6.1
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 50 KDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIGAL 87
K++ + G K V S ES +L ++V + G +
Sbjct: 65 KELEKTYGIKAKAYKCQVDSYESCEKLVKDVVADFGQI 102
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Length = 292
Score = 24.5 bits (54), Expect = 6.7
Identities = 4/37 (10%), Positives = 11/37 (29%), Gaps = 6/37 (16%)
Query: 25 PIEIMC------HLPAVCEDKDIPYCYVPSKKDIGEA 55
++I+ + +P+ + P D
Sbjct: 122 KMDIVGIVSNHPDFAPLAAQHGLPFRHFPITADTKAQ 158
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45,
flexible regions, monomer cycle; NMR {Homo sapiens}
Length = 165
Score = 24.3 bits (52), Expect = 6.8
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 20/82 (24%)
Query: 11 RKTIMLCIFAGDVTPIEIMCH------LPAVCEDKDIPYCYVPSKKDIGEALGRKKP--- 61
++LC+ A D + + A C + DI V + + E L +
Sbjct: 51 PDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGP 110
Query: 62 -----------CICVIVKSTES 72
CV+V + S
Sbjct: 111 AASEGAEQPPDLHCVLVTNPHS 132
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Length = 287
Score = 24.5 bits (54), Expect = 6.8
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 7/38 (18%)
Query: 25 PIEIMC-------HLPAVCEDKDIPYCYVPSKKDIGEA 55
+E++ +V DIP+ Y+P A
Sbjct: 115 DMEVVGIISNHPREALSVSLVGDIPFHYLPVTPATKAA 152
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Length = 302
Score = 24.1 bits (53), Expect = 7.1
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 25 PIEIMC------HLPAVCEDKDIPYCYVPSKKD 51
+I C L ++ E DIPY +VP
Sbjct: 132 DCDIACVISNHQDLRSMVEWHDIPYYHVPVDPK 164
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 24.0 bits (53), Expect = 8.1
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 54 EALGRKKPCICVIVKSTESVAELYEEVKQEIGAL 87
+ALG V +S + +++VK E+G +
Sbjct: 59 KALGFDFYASEGNVGDWDSTKQAFDKVKAEVGEI 92
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain,
structural genomics, joint C structural genomics, JCSG;
HET: MSE; 2.25A {Pseudomonas putida}
Length = 286
Score = 24.1 bits (53), Expect = 8.3
Identities = 4/33 (12%), Positives = 10/33 (30%), Gaps = 6/33 (18%)
Query: 25 PIEIMC------HLPAVCEDKDIPYCYVPSKKD 51
++++ L + IPY +
Sbjct: 117 GMDVVAVVSNHPDLEPLAHWHKIPYYHFALDPK 149
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 24.1 bits (53), Expect = 8.7
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 50 KDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIGAL 87
+ +G+ G K V +T+ V + +++ ++G +
Sbjct: 56 EKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPI 93
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 24.0 bits (53), Expect = 9.1
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 50 KDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIGAL 87
++I G K + + + S ES+ + +EE+ + +
Sbjct: 49 EEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGI 86
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 23.7 bits (52), Expect = 9.6
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 54 EALGRKKPCICVIVKSTESVAELYEEVKQEIGAL 87
GR V V ES E+V + G +
Sbjct: 71 RDAGRDFKAYAVDVADFESCERCAEKVLADFGKV 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.433
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,312,890
Number of extensions: 66901
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 44
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)