RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6265
(91 letters)
>d2alea1 d.79.3.1 (A:1-126) Small nuclear
ribonucleoprotein-associated protein 1, Snu13p
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 126
Score = 77.2 bits (190), Expect = 1e-20
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCI 63
L R I A D PIEI+ HLP +CEDK++PY +VPS+ +G A G +P I
Sbjct: 39 EATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVI 98
Query: 64 CVIVKSTE--SVAELYEEVKQEIGALPV 89
+ + + ++ VK +I L +
Sbjct: 99 AASITTNDASAIKTQIYAVKDKIETLLI 126
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix
[TaxId: 56636]}
Length = 124
Score = 76.4 bits (188), Expect = 2e-20
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVK 68
++R L + A DV P EI+ HLP +C++K IPY YVPSKK +GEA G + V +
Sbjct: 40 VERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAII 99
Query: 69 STESVAELYEEVKQEIGALPVTW 91
L E+ +++ L
Sbjct: 100 EPGDAETLVREIVEKVKELRAKA 122
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 113
Score = 75.2 bits (185), Expect = 5e-20
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVK 68
++R L A DV P EI+ HLP +CE+K++PY YV SK D+G A+G + PC +
Sbjct: 33 VERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAII 92
Query: 69 STESVAELYEEVKQEIGALP 88
+ + + + ++I L
Sbjct: 93 NEGELRKELGSLVEKIKGLQ 112
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 119
Score = 72.6 bits (178), Expect = 8e-19
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVK 68
++R + L A DV P EI+ H+P + ++K +P+ +V + D+G A G + V
Sbjct: 40 IERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVT 99
Query: 69 STESVAELYEEVKQEIGAL 87
E++ ++ L
Sbjct: 100 DAGEADADVEDIADKVEEL 118
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 71.5 bits (175), Expect = 2e-18
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 4 TVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCI 63
L R + A D P+EI+ HLP +CEDK++PY +V SK+ +G A G +P I
Sbjct: 38 EATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVI 97
Query: 64 C--VIVKSTESVAELYEEVKQEIGALPV 89
V +K + + + ++Q I L V
Sbjct: 98 ACSVTIKEGSQLKQQIQSIQQSIERLLV 125
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium
parvum [TaxId: 5807]}
Length = 115
Score = 68.4 bits (167), Expect = 3e-17
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVK 68
L R + + A D P+EI+ HLP VCEDK+ PY +V SK +G A G +P I +
Sbjct: 36 LNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVSRPVIAAAIT 95
Query: 69 STE--SVAELYEEVKQEI 84
S + S++ E+K +I
Sbjct: 96 SKDGSSLSSQITELKDQI 113
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 66.4 bits (162), Expect = 1e-16
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVK 68
++R L I A DV P E++ HLP +CE+K IPY YV SK+D+G+A G + V +
Sbjct: 37 VERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAII 96
Query: 69 S---TESVAELYEEVKQ 82
+ E + L E+V
Sbjct: 97 NEGDAEELKVLIEKVNV 113
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 97
Score = 51.3 bits (123), Expect = 8e-11
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIP-YCYVPSKKDIGEALGRKKPCICVIV 67
L++ L I A + P+ L Y + ++G A+G+ V +
Sbjct: 26 LRQGKSKLIIIAANT-PVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSI 84
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e)
{Archaeon Thermococcus celer [TaxId: 2264]}
Length = 98
Score = 51.3 bits (123), Expect = 9e-11
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYC-YVPSKKDIGEALGRKKPCICVIV 67
+ L I A + +I + I + + ++G LGR + V
Sbjct: 27 AKMGGAKLIIVARNA-RPDIKEDIEYYARLSGIAVYEFEGTSVELGTLLGRPHTVSALAV 85
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30
(L30e) {Archaeon Thermococcus celer [TaxId: 2264]}
Length = 100
Score = 48.6 bits (116), Expect = 1e-09
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 9 LQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIP-YCYVPSKKDIGEALGRKKPCICVIV 67
L+ L I A + + L P Y + + ++G A+G+ V +
Sbjct: 27 LKMGGSKLIIIARNT-RPDRKEDLEYYARLSGTPVYEFEGTNVELGTAVGKPHTVSVVSI 85
Query: 68 K 68
Sbjct: 86 L 86
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 32.0 bits (72), Expect = 0.005
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 20 AGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEE 79
AG V P + CH+ + PS + E L +K I +I TE+V LY+
Sbjct: 157 AGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKN--INLIFAVTENVVNLYQN 214
Query: 80 VKQEIG 85
+ I
Sbjct: 215 YSELIP 220
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 167
Score = 23.4 bits (50), Expect = 4.3
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 51 DIGEALGRKKPCICV 65
+IG KP I V
Sbjct: 101 EIGFMRAMHKPVILV 115
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA
polymerases {Sulfolobus solfataricus [TaxId: 2287]}
Length = 410
Score = 23.6 bits (50), Expect = 4.8
Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 22/63 (34%)
Query: 42 PYCYVPSKKDIGEAL----------------------GRKKPCICVIVKSTESVAELYEE 79
PY V + D + K ++V+ +V L +
Sbjct: 49 PYFLVDLEPDKVGKIPKIVRDPSFDHIETVSKIDPYTWNKFKLTKIVVRDPLAVRRLRND 108
Query: 80 VKQ 82
V +
Sbjct: 109 VPK 111
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding
protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 22.4 bits (48), Expect = 5.5
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 48 SKKDIGEALGRKKPCICVIVKSTESVAELYEE 79
K +I + I+K+ ++ +
Sbjct: 27 RKGEIARRFNIPPSTLSTILKNKRAILASERK 58
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 195
Score = 23.4 bits (50), Expect = 5.6
Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 6 QGPLQRKTIMLC-IFAGDVTPIEIMCHLPAVCEDKDIPY------------CYVPSKKDI 52
P K + C ++ GDV P ++ + + + I + Y P
Sbjct: 60 CDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVP 119
Query: 53 GEALGRKKPCICVIVKSTESVAELYEEVKQEIGAL 87
G L + + +C++ +T ++AE + + + +
Sbjct: 120 GGDLAKVQRAVCMLSNTT-AIAEAWARLDHKFDLM 153
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.433
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 328,671
Number of extensions: 13636
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 19
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)