Diaphorina citri psyllid: psy6265


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
MNSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIGALPVTW
cccEEEEEEEcccEEEEEEEcccccHHHHHcccHHHHcccccEEEEccHHHHHHHccccccEEEEEEEEcHHHHHHHHHHHHHHccccccc
*NSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIGALPVTW
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MNSTVQGPLQRKTIMLCIFAGDVTPIEIMCHLPAVCEDKDIPYCYVPSKKDIGEALGRKKPCICVIVKSTESVAELYEEVKQEIGALPVTW

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
50S ribosomal protein L7Ae Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA and box C/D sRNAs.confidentO29494
13 kDa ribonucleoprotein-associated protein Common component of the spliceosome and rRNA processing machinery. In association with the spliceosomal U4/U6.U5 tri-snRNP particle, required for splicing of pre-mRNA. In association with box C/D snoRNPs, required for processing of pre-ribosomal RNA (rRNA) and site-specific 2'-O-methylation of substrate RNAs. Essential for the accumulation and stability of U4 snRNA, U6 snRNA, and box C/D snoRNAs.confidentP0CQ52
50S ribosomal protein L7Ae Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs.confidentQ8U160

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0030515 [MF]snoRNA bindingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723
GO:0046540 [CC]U4/U6 x U5 tri-snRNP complexprobableGO:0005575, GO:0032991, GO:0043231, GO:0030532, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0044422
GO:0044699 [BP]single-organism processprobableGO:0008150
GO:0071011 [CC]precatalytic spliceosomeprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0031428 [CC]box C/D snoRNP complexprobableGO:0031974, GO:0043229, GO:0043228, GO:0043227, GO:0043226, GO:0044446, GO:0005732, GO:0031981, GO:0005730, GO:0005634, GO:0030529, GO:0044452, GO:0032991, GO:0043231, GO:0043232, GO:0043233, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0070013, GO:0044428, GO:0044424, GO:0044422
GO:0032040 [CC]small-subunit processomeprobableGO:0032991, GO:0044464, GO:0030684, GO:0005623, GO:0030529, GO:0005575, GO:0044424, GO:0005622

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1RLG, chain A
Confidence level:very confident
Coverage over the Query: 2-88
View the alignment between query and template
View the model in PyMOL