RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6266
(218 letters)
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand
2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa}
SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Length = 412
Score = 251 bits (643), Expect = 6e-83
Identities = 103/207 (49%), Positives = 127/207 (61%), Gaps = 18/207 (8%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C+PWVLPVVR+ E+ +A + SLNHEYLP+LGL F + A+R+ LG D SP L+E
Sbjct: 39 AYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDD-SPALQE 97
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNY-----TTFYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GAEFL R N T Y S PTWENH VF AGF + R
Sbjct: 98 KRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRS 157
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT------AQ--QVAH-MVDKHH 181
YRYW+ EKR +D G DL NAP+ S+ +LHACAHNPT Q Q+A M +
Sbjct: 158 YRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFL 217
Query: 182 VYLLRSGRINMCGLTTQNLDHVAQAIH 208
G + NL+ A AI
Sbjct: 218 FPFF---DSAYQGFASGNLEKDAWAIR 241
Score = 80.7 bits (200), Expect = 4e-18
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSI 214
+QV +++++ H+YLL SGRINMCGLTT+NLD+VA +IH+AVT I
Sbjct: 366 NPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTKI 411
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces
cerevisiae} SCOP: c.67.1.1
Length = 412
Score = 244 bits (625), Expect = 3e-80
Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 2/154 (1%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYR + KPWVLP V+ AEK + D S NHEYL + GL S +S A +++ G S L+E
Sbjct: 38 AYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQ-SDALQE 96
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
R VQ+LSGTGAL + A+F + Y SKPTW NH +F N G + Y YW
Sbjct: 97 DRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGL-KTATYPYWA 155
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
E +++D G + AP+ S+ +LH+CAHNPT
Sbjct: 156 NETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPT 189
Score = 78.1 bits (193), Expect = 4e-17
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
T Q V + + H VYL+ SGR ++ GL N+++VA+AI + V
Sbjct: 366 TPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVV 408
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase,
pyridoxal phosphate, internal ALD schiff base,
amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia
coli k-12} PDB: 3tat_A*
Length = 397
Score = 243 bits (623), Expect = 5e-80
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y E+ L V +AE L A YLP+ GL + A +L G D P L++
Sbjct: 35 LYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGAD-HPVLKQ 93
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
R +QTL G+GAL+VGA+FL R + + S PTWENH +F AGF E Y +++
Sbjct: 94 QRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGF-EVSTYPWYD 152
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
V F + L S+++LH C HNPT
Sbjct: 153 EATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPT 186
Score = 76.1 bits (188), Expect = 2e-16
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
+A QV + ++ VYL+ SGR+ + GL T N+ VA+A +
Sbjct: 355 SAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease; HET:
LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Length = 420
Score = 240 bits (616), Expect = 9e-79
Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 3/154 (1%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y E+ K +L VR AEK + L YLP+ G+ ++ ++ ++LLG D SP +
Sbjct: 58 VYTNEDGKIPLLRAVRDAEKARV-EAGLPRGYLPIDGIAAYDASVQKLLLGDD-SPLIAA 115
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
GR Q L GTGAL++GA+FL + S P+WENHR +F AGF E Y Y++
Sbjct: 116 GRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGF-EVVAYPYYD 174
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
+ V+F GM L ++++LHAC HNPT
Sbjct: 175 AKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPT 208
Score = 76.5 bits (189), Expect = 1e-16
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
T+ QV + ++ +Y + +GRI + L T+NLD VA AI +
Sbjct: 377 TSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIAAVL 419
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET:
PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A*
1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A*
1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A*
3hlm_A* 3pdb_A*
Length = 401
Score = 237 bits (608), Expect = 9e-78
Identities = 70/155 (45%), Positives = 99/155 (63%), Gaps = 4/155 (2%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYR + KP+VL VR+AE +A ++ EYLP+ GL F+ A+ + LG + S +
Sbjct: 37 AYRDDNGKPYVLNCVRKAEAMIA-AKKMDKEYLPIAGLADFTRASAELALGEN-SEAFKS 94
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNY-TTFYYSKPTWENHRLVFLNAGFTEAREYRYW 134
GR VQ +SGTG+LRVGA FL R + Y KP+W NH +F +AG + + YRY+
Sbjct: 95 GRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGL-QLQAYRYY 153
Query: 135 NPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
+P+ ++DFTG ED+ P+ S+I+LHACAHNPT
Sbjct: 154 DPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPT 188
Score = 77.2 bits (191), Expect = 7e-17
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
+QV + + +Y+ + GRI++ G+ + N+ ++A AIH
Sbjct: 358 KPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT 400
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET:
PLP; 2.80A {Plasmodium falciparum}
Length = 405
Score = 237 bits (608), Expect = 1e-77
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
++ + V A+K + ++ YL G E FS+ ++ G + S + +
Sbjct: 38 VCCNDDGDLHIFDSVLNADKLVT-ENYKEKPYLLGNGTEDFSTLTQNLIFGNN-SKYIED 95
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
+ +Q + GTGA+ V EFL LN T Y + P + NH + + GF + +++
Sbjct: 96 KKICTIQCIGGTGAIFVLLEFLKM-LNVETLYVTNPPYINHVNMIESRGF-NLKYINFFD 153
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
+++ DL N P+ S +IL +NP
Sbjct: 154 YNLIDINYDLFLNDLRNIPNGSSVILQISCYNPC 187
Score = 73.4 bits (181), Expect = 1e-15
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSI 214
A+ H+ HH+Y++ +GRIN+ G+T N+D++A I +++ I
Sbjct: 361 LAKIAEHL-KTHHIYIINNGRINVSGITKNNVDYIADKICLSLSQI 405
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta,
PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia
coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A*
2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A*
1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A*
1asn_A* 1c9c_A* 1cq6_A* ...
Length = 396
Score = 237 bits (607), Expect = 1e-77
Identities = 56/154 (36%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y+ E K VL V++AE+ L ++ YL + G+ F +L G S + +
Sbjct: 35 VYKDETGKTPVLTSVKKAEQYLLENE-TTKNYLGIDGIPEFGRCTQELLFGKG-SALIND 92
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
RA QT GTGALRV A+FL + + + S P+W NH+ VF +AG E REY Y++
Sbjct: 93 KRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGL-EVREYAYYD 151
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
E +DF + L A V++ H C HNPT
Sbjct: 152 AENHTLDFDALINSLNEAQAGDVVLFHGCCHNPT 185
Score = 76.1 bits (188), Expect = 2e-16
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
T +QV + ++ VY + SGR+N+ G+T N+ + +AI +
Sbjct: 354 TKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A
{Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A*
1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A*
2ay7_A* 2ay8_A* 2ay9_A*
Length = 394
Score = 234 bits (600), Expect = 1e-76
Identities = 46/154 (29%), Positives = 66/154 (42%), Gaps = 6/154 (3%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y+ ++ V AE+ + + Y + G F A ++LG L+
Sbjct: 35 VYKDATGHTPIMRAVHAAEQRML-ETETTKTYAGLSGEPEFQKAMGELILGDG----LKS 89
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
+ T+ GTGALR E + S PTW NH + G + YRY++
Sbjct: 90 ETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGL-PVQTYRYFD 148
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
E R VDF GM DL A +++LH C HNPT
Sbjct: 149 AETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPT 182
Score = 74.5 bits (184), Expect = 6e-16
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVT 212
T +QV + ++ +Y++ RIN+ GL + +A+AI + V
Sbjct: 351 TPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIE-VG 393
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural
genomics, seattle structural genomi for infectious
disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Length = 448
Score = 234 bits (598), Expect = 1e-75
Identities = 63/159 (39%), Positives = 90/159 (56%), Gaps = 6/159 (3%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLGLESFSSAATRMLLGGDASPPLR 74
AYR E KPW+LP V++AE +++D S N EY PV G F AA ++ G D S +
Sbjct: 58 AYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKD-SKAAQ 116
Query: 75 EGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFT---EAREY 131
EGR Q+LSGTG+L +G EFLH + FY TW NH ++ +EY
Sbjct: 117 EGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEY 176
Query: 132 RYWNPE-KRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
Y + + +DF+ +D+ +AP+ S+ + HACAHNP+
Sbjct: 177 TYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPS 215
Score = 79.3 bits (196), Expect = 2e-17
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 169 TAQQVAHMVDKHHVYLLRS-GRINMCGLTTQNLDHVAQAIHDAVTSIPSH 217
T + V ++ +K +YL+++ GR++MCGLT N D+VA+AIHDAVT +P
Sbjct: 398 TPEHVDYLKEKWSIYLVKAGGRMSMCGLTESNCDYVAEAIHDAVTKLPFK 447
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural
genomics, SEA structural genomics center for infectious
disease; HET: LLP; 2.30A {Trypanosoma brucei}
Length = 409
Score = 232 bits (593), Expect = 2e-75
Identities = 61/155 (39%), Positives = 84/155 (54%), Gaps = 9/155 (5%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
YR + +P+VL V+QA N +Y PV G+ SF A ++ G LR+
Sbjct: 50 VYRDDADQPFVLECVKQATLGT------NMDYAPVTGIASFVEEAQKLCFGPT-CAALRD 102
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRIL-NYTTFYYSKPTWENHRLVFLNAGFTEAREYRYW 134
GR QTL GTGALR+G + L+R + N Y + NH +F AG E Y Y+
Sbjct: 103 GRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGM-ELTPYSYY 161
Query: 135 NPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
+P + ++ GM E L AP+ SVI++HACAHNPT
Sbjct: 162 DPATKGLNLAGMLECLDKAPEGSVILVHACAHNPT 196
Score = 76.5 bits (189), Expect = 1e-16
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
T +QV + ++H+Y+ +GR + GL + N+++V+QAIH+
Sbjct: 366 TREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAIHNVT 408
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
structure, cytosol; HET: AKG GOL; 2.20A {Veillonella
parvula}
Length = 418
Score = 212 bits (542), Expect = 1e-67
Identities = 34/156 (21%), Positives = 53/156 (33%), Gaps = 11/156 (7%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
A EE L V++ L DS + Y P+ G+ F AA + G P E
Sbjct: 47 AIHDEEGNLVFLKTVKEEYLSL--SDSEHVGYAPIAGIPDFLCAAEKECFGNF-RP---E 100
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
G + T GTG + + W +R++ + G Y ++
Sbjct: 101 GHIRSIATAGGTGGIHHLIHNYTEP--GDEVLTADWYWGAYRVICSDTGR-TLVTYSLFD 157
Query: 136 PEKRA--VDFTGMYEDLVNAPDNSVIILHACAHNPT 169
F +L N V+I + +NPT
Sbjct: 158 EHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPT 193
Score = 65.8 bits (161), Expect = 6e-13
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 170 AQQVAHMVDKHH---VYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSI 214
A + + K H + L RI CG+ + +A+ I++A+ S+
Sbjct: 368 ANAICEELKKEHIYVIALANGIRIAACGIPKCQMTGLAEKIYNAMKSL 415
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center
for structural genomics, P 5'-phosphate binding; HET:
PLP; 2.86A {Anaerococcus prevotii}
Length = 413
Score = 194 bits (495), Expect = 1e-60
Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 11/156 (7%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
++ K LP V E+ D S Y P+ G + + L G P E
Sbjct: 46 TLLDDKGKIIALPSVYDRLDEM--DRSHIASYAPIEGEKDYRKIVIDTLFGPY-KP---E 99
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
G + T GTGA+R + W +R + G + + ++
Sbjct: 100 GYISAIATPGGTGAIRSA--IFSYLDEGDPLICHDYYWAPYRKICEEFGR-NFKTFEFFT 156
Query: 136 PEKRA--VDFTGMYEDLVNAPDNSVIILHACAHNPT 169
+ + ++ + D ++++ +NPT
Sbjct: 157 DDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPT 192
Score = 65.8 bits (161), Expect = 6e-13
Identities = 5/49 (10%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 167 NPTAQQVAHMVDKH--HVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTS 213
+ V + ++ + + R+ +CG+ + + + Q +
Sbjct: 364 DKAFDIVKDLEKENIFTIPSAKGIRVAICGVGEEKIPKLVQRLAFYTNK 412
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 144 bits (364), Expect = 3e-41
Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 7/154 (4%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
++ K + +L D+ Y P G+E + +L + +
Sbjct: 56 MATNKDGKM-FASSLDAMFNDLTPDE--IFPYAPPQGIEELRDLWQQKMLRDN-PELSID 111
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
+ + T + T L + + T + W N++LVF + Y ++
Sbjct: 112 NMSRPIVTNALTHGLSLVGDLFVN--QDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFD 169
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
+ + E L + + VI++ +NPT
Sbjct: 170 KDGH-YTTDSLVEALQSYNKDKVIMILNYPNNPT 202
Score = 48.9 bits (117), Expect = 4e-07
Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 169 TAQQVA-HMVDKHHVYLL----RSGRINMCGLTTQNLDHVAQAIHDAVTSI 214
+ + H++DK+ + ++ RI + ++ HV +I A+ +
Sbjct: 379 DPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDSIAKAIDDL 429
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.002
Identities = 32/174 (18%), Positives = 53/174 (30%), Gaps = 33/174 (18%)
Query: 22 CKPWVLPVVRQAEKELAADDSLNHEYLPVLG--LESFSSAATRMLLG---GDASPPLREG 76
CK +L R K++ S L + + + LL L
Sbjct: 266 CK--ILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR- 320
Query: 77 RAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEARE--YRYW 134
L + AE + L TW+N + V + T E
Sbjct: 321 EVLTTNPR----RLSIIAESIRDGLA---------TWDNWKHVNCDK-LTTIIESSLNVL 366
Query: 135 NPEKRAVDFTGMYEDLVNAPDNSVI---ILHACAHNPTAQQVAHMVDKHHVYLL 185
P ++ M++ L P ++ I +L + V +V+K H Y L
Sbjct: 367 EPA----EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Score = 34.1 bits (77), Expect = 0.033
Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 51/137 (37%)
Query: 97 LHRIL--------NYTTFYYSKPTWEN--------H-------------RLVFLNAGFTE 127
LHR + + + P + H R+VFL+ F E
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 128 AREYRY----WNPEKRAVDFTG---MYEDLV--NAPDNSVII------LHACAHN----P 168
+ R+ WN ++ Y+ + N P ++ L N
Sbjct: 505 QK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 169 TAQ--QVAHMVDKHHVY 183
++A M + ++
Sbjct: 564 YTDLLRIALMAEDEAIF 580
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.010
Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 80/218 (36%)
Query: 12 EIRNAYRTEECKPWVLPVVRQAEKELA-------------------------ADDSLNHE 46
E+R+ Y+T V +++ + + L+ ++ + +
Sbjct: 172 ELRDLYQTY--HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 47 YL-------PVLGLESFSS-AATRMLLG---GDASPPLR--EGRAFGVQT-----LSGTG 88
YL P++G+ + T LLG G+ L+ G + G+ T + +
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 89 ---------ALRV----GAE----FLHRILNYTTFYYSK------PTW----ENHRLVFL 121
A+ V G + + L + S P+ N +
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 122 NAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVI 159
+ + P + V+ + LVN N V+
Sbjct: 350 QDYVNKTNSHL---PAGKQVEIS-----LVNGAKNLVV 379
Score = 33.1 bits (75), Expect = 0.075
Identities = 38/224 (16%), Positives = 70/224 (31%), Gaps = 53/224 (23%)
Query: 2 YMSSGEIHC--CEIRNAYRTEECKPWVLPVVR---QAEKELAADDSLNHEYLPVLGLESF 56
Y+ +IH ++ T K +++ A + A + + L +
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVK--TKELIKNYITA--RIMAKRPFDKKSNSAL-FRAV 149
Query: 57 SSAATRM--LLGG--DASPPLREGRAFGVQTLSGTGALRVGAEFLHRI---LNYTTFYYS 109
++ + GG + E ++ L T + VG + + L+ +
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEE-----LRDLYQTYHVLVG-DLIKFSAETLS--ELIRT 201
Query: 110 KPTWENHRLVFLNAGFTEAREYRYW--NPEKR-AVDFTGMYEDLVNAPDNSVIILHACAH 166
E FT+ W NP D+ L++ P + +I
Sbjct: 202 TLDAEKV--------FTQGLNILEWLENPSNTPDKDY------LLSIPISCPLI------ 241
Query: 167 NPTAQQVAHMVDKHHVYLLRSG--RINMCGLTTQNLDHV-AQAI 207
Q+AH V + G R + G T + V A AI
Sbjct: 242 --GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Score = 29.2 bits (65), Expect = 1.2
Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 30/124 (24%)
Query: 103 YTTFYYSKPTWEN-HRLVFLNAGFTEAREYRYWNPEKRAVDFTG--------MYEDLV-- 151
Y T ++ W GF+ NP + F G Y ++
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVIN-NPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 152 NAPDNSVIILHACAHNPTAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQ-AIHDA 210
D + +++ +++H + TQ Q A+
Sbjct: 1695 TIVDGKLK----------TEKIFKEINEHSTSYTFRSEKGLLSA-TQF----TQPAL--T 1737
Query: 211 VTSI 214
+
Sbjct: 1738 LMEK 1741
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 30.0 bits (67), Expect = 0.50
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 127 EAREYRYWNPE--KRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQQVAHMVDK 179
E EYR WN K A + V+ L A T V+ +++
Sbjct: 47 EGVEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYL-GAASGTTISHVSDIIEL 100
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 29.3 bits (65), Expect = 0.79
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 127 EAREYRYWNPE--KRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQQVAHMVDKHHVY 183
EYR WNP K A + + D+ ++ L + T VA + DK VY
Sbjct: 45 GDEEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYL-GASAGTTPSHVADIADKGIVY 102
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.82
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 21/43 (48%)
Query: 31 RQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPL 73
+QA K+L A SL Y D++P L
Sbjct: 19 KQALKKLQA--SLK-LYAD------------------DSAPAL 40
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding
motif, RNA binding protein; HET: SAM; 2.90A
{Archaeoglobus fulgidus} SCOP: c.66.1.3
Length = 210
Score = 27.6 bits (61), Expect = 2.9
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 129 REYRYWNPE--KRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQQVAHMVDKHHVYLL- 185
YR W P K A L D V+ L A T +A +VD+ +Y +
Sbjct: 31 DGYREWVPWRSKLAAMILK-GHRLKLRGDERVLYL-GAASGTTVSHLADIVDEGIIYAVE 88
Query: 186 ---RSGR--INMC 193
+ + +
Sbjct: 89 YSAKPFEKLLELV 101
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 27.9 bits (61), Expect = 3.0
Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 30/158 (18%)
Query: 19 TEECKPWVLPVVRQAEKELAAD--DSLNHEYLPVLGLESFSSAATRMLLG-GDASPPLRE 75
+ P V + AE +LA D L +P + + ++G GD
Sbjct: 263 LGKHHPSVAERIDPAEFDLANSSLDILQGGVVPAFRDGHATLNNGKTIIGLGDI------ 316
Query: 76 GRAFGVQTLSGTG---ALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYR 132
V + G G A IL ++ + + F+E E R
Sbjct: 317 --QATVDPVLGQGANMASYAAWILGEEILAHSVY---------------DLRFSEHLERR 359
Query: 133 YWNPEKRAVDFTGMYEDLVNAPDNSVIILH-ACAHNPT 169
+ A +T ++A + + +
Sbjct: 360 RQDRVLCATRWTNFTLSALSALPPEFLAFLQILSQSRE 397
>1ccw_B Protein (glutamate mutase); coenzyme B12, radical reaction,
TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A
{Clostridium cochlearium} SCOP: c.1.19.2 PDB: 1cb7_B*
1i9c_B*
Length = 483
Score = 27.6 bits (61), Expect = 3.7
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 37 LAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEF 96
L + +EYL G T + P E +AFGV + T A GA
Sbjct: 265 LRCLEEQTNEYLKAYGYNDV--FVTTVFHQWMGGFPQDESKAFGVIVTATTIAALAGATK 322
Query: 97 LH 98
+
Sbjct: 323 VI 324
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 27.4 bits (60), Expect = 3.8
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 130 EYRYWNPE--KRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQQVAHMV-DKHHVY 183
EYR WN K A +L + ++ L A TA ++ ++ + +Y
Sbjct: 51 EYREWNAYRSKLAAALLKGLIELPVKEGDRILYL-GIASGTTASHMSDIIGPRGRIY 106
>2z6v_A Putative uncharacterized protein; sulfotransferase, unknown
function; HET: PLM; 2.60A {Mycobacterium avium}
Length = 414
Score = 26.8 bits (58), Expect = 6.0
Identities = 11/81 (13%), Positives = 21/81 (25%)
Query: 60 ATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV 119
R+ + A + L G R G + +L+ S W+ +
Sbjct: 85 GRRLQVHAYIQDHPEVLDAPVERPLIVLGMPRTGTTVISYLLDQDPARRSLLHWQCVHPI 144
Query: 120 FLNAGFTEAREYRYWNPEKRA 140
+ T + R
Sbjct: 145 PPASTETLRTDPRCLALLDEQ 165
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 26.6 bits (58), Expect = 6.0
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 130 EYRYWNPE--KRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQQVAHMVDK 179
EYR WNP K A G + + P V+ L A T V+ +V
Sbjct: 51 EYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYL-GAASGTTVSHVSDIVGP 101
>2zq5_A Putative uncharacterized protein; sulfotransferase fold; 2.00A
{Mycobacterium tuberculosis}
Length = 384
Score = 26.8 bits (58), Expect = 7.0
Identities = 19/100 (19%), Positives = 27/100 (27%), Gaps = 6/100 (6%)
Query: 41 DSLNHEY-LPVLGLESFSSA-----ATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGA 94
D+ E L VLG + R+L + + TG +R G
Sbjct: 45 DAYQGEAGLTVLGSKMNRFFLRGALVARLLSQSAWKQYPEHVDVAIKRPIFVTGLVRTGT 104
Query: 95 EFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYW 134
LHR+L + W T Y
Sbjct: 105 TALHRLLGADPAHQGLHMWLAEYPQPRPPRETWESNPLYR 144
>3msw_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.90A {Bacteroides fragilis}
Length = 145
Score = 26.0 bits (56), Expect = 8.3
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 109 SKPTWENH-RLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSV 158
K TWE R V + EY WN EK + D + Y + + + +
Sbjct: 62 FKNTWETESRTVISRYETETSVEYSVWNKEKGSFDLSKKYIYITDNNNQLI 112
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE AMP;
1.79A {Escherichia coli k-12}
Length = 140
Score = 25.6 bits (57), Expect = 8.8
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 152 NAPDNSVIILHACAHNPTAQQVAHMVDKHHVYLLR 186
N + I+ A A NP + +A V +
Sbjct: 81 NGYEAGEIVASARAKNPDIEIIARAHYDDEVAYIT 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.416
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,473,620
Number of extensions: 204365
Number of successful extensions: 503
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 44
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)