RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6266
(218 letters)
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
scrofa), cytosolic form [TaxId: 9823]}
Length = 412
Score = 110 bits (275), Expect = 3e-29
Identities = 95/183 (51%), Positives = 122/183 (66%), Gaps = 14/183 (7%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C+PWVLPVVR+ E+ +A + SLNHEYLP+LGL F + A+R+ LG D SP L+E
Sbjct: 39 AYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDD-SPALQE 97
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYT-----TFYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GAEFL R N T Y S PTWENH VF AGF + R
Sbjct: 98 KRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRS 157
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHV 182
YRYW+ EKR +D G DL NAP+ S+ +LHACAHNPT +Q+A ++ + +
Sbjct: 158 YRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFL 217
Query: 183 YLL 185
+
Sbjct: 218 FPF 220
Score = 63.8 bits (154), Expect = 1e-12
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSI 214
+QV +++++ H+YLL SGRINMCGLTT+NLD+VA +IH+AVT I
Sbjct: 366 NPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTKI 411
>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Escherichia coli [TaxId: 562]}
Length = 397
Score = 98.1 bits (243), Expect = 1e-24
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 2/178 (1%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y E+ L V +AE L A YLP+ GL + A +L G D P L++
Sbjct: 35 LYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGAD-HPVLKQ 93
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
R +QTL G+GAL+VGA+FL R + + S PTWENH +F AGF Y +++
Sbjct: 94 QRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFE-VSTYPWYD 152
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQQVAHMVDKHHVYLLRSGRINMC 193
V F + L P S+++LH C HNPT + + + +L++ +
Sbjct: 153 EATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPF 210
Score = 57.3 bits (137), Expect = 2e-10
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
+A QV + ++ VYL+ SGR+ + GL T N+ VA+A +
Sbjct: 355 SAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397
>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken
(Gallus gallus), mitochondria [TaxId: 9031]}
Length = 401
Score = 88.9 bits (219), Expect = 2e-21
Identities = 70/158 (44%), Positives = 96/158 (60%), Gaps = 4/158 (2%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYR + KP+VL VR+AE A ++ EYLP+ GL F+ A+ + L G+ S +
Sbjct: 37 AYRDDNGKPYVLNCVRKAEAM-IAAKKMDKEYLPIAGLADFTRASAELAL-GENSEAFKS 94
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILN-YTTFYYSKPTWENHRLVFLNAGFTEAREYRYW 134
GR VQ +SGTG+LRVGA FL R Y KP+W NH +F +AG + YRY+
Sbjct: 95 GRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQ-LQAYRYY 153
Query: 135 NPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQQ 172
+P+ ++DFTG ED+ P+ S+I+LHACAHNPT
Sbjct: 154 DPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVD 191
Score = 56.5 bits (135), Expect = 4e-10
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
+QV + + +Y+ + GRI++ G+ + N+ ++A AIH
Sbjct: 358 KPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT 400
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Paracoccus denitrificans [TaxId: 266]}
Length = 394
Score = 85.1 bits (209), Expect = 4e-20
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 6/156 (3%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y+ ++ V AE+ + ++ Y + G F A ++LG +
Sbjct: 35 VYKDATGHTPIMRAVHAAEQRMLETET-TKTYAGLSGEPEFQKAMGELILGDGL----KS 89
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
+ T+ GTGALR E + S PTW NH + G + YRY++
Sbjct: 90 ETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGL-PVQTYRYFD 148
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ 171
E R VDF GM DL A +++LH C HNPT
Sbjct: 149 AETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGA 184
Score = 58.5 bits (140), Expect = 7e-11
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHD 209
T +QV + ++ +Y++ RIN+ GL + +A+AI +
Sbjct: 351 TPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIE 391
>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's
yeast (Saccharomyces cerevisiae), cytosolic form [TaxId:
4932]}
Length = 412
Score = 84.7 bits (208), Expect = 8e-20
Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 10/177 (5%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYR + KPWVLP V+ AEK + D S NHEYL + GL S +S A +++ G S L+E
Sbjct: 38 AYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIF-GTQSDALQE 96
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
R VQ+LSGTGAL + A+F + Y SKPTW NH +F N G A + N
Sbjct: 97 DRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWAN 156
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHVYL 184
E +++D G + AP+ S+ +LH+CAHNPT Q+ + +
Sbjct: 157 -ETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIA 212
Score = 59.6 bits (143), Expect = 3e-11
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
T Q V + + H VYL+ SGR ++ GL N+++VA+AI + V
Sbjct: 366 TPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVV 408
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
{Escherichia coli [TaxId: 562]}
Length = 396
Score = 80.4 bits (197), Expect = 2e-18
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 11/178 (6%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y+ E K VL V++AE+ L +++ YL + G+ F +L G S + +
Sbjct: 35 VYKDETGKTPVLTSVKKAEQYLLENET-TKNYLGIDGIPEFGRCTQELLF-GKGSALIND 92
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
RA QT GTGALRV A+FL + + + S P+W NH+ VF +AG REY Y++
Sbjct: 93 KRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEV-REYAYYD 151
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT--------AQQVAHMVDKHHVYLL 185
E +DF + L A V++ H C HNPT Q +A + + L
Sbjct: 152 AENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPL 209
Score = 60.0 bits (144), Expect = 2e-11
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
T +QV + ++ VY + SGR+N+ G+T N+ + +AI +
Sbjct: 354 TKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 28.5 bits (63), Expect = 0.56
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 130 EYRYWNP--EKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQQVAHMVDKHHVY 183
EYR WNP K A + + D+ ++ L + T VA + DK VY
Sbjct: 48 EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYL-GASAGTTPSHVADIADKGIVY 102
>d1tw4a_ b.60.1.2 (A:) Liver basic fatty acid binding protein,
LB_FABP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 125
Score = 27.5 bits (61), Expect = 0.76
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 21/96 (21%)
Query: 46 EYLPVLGLESFSSAATRMLLGGDASPPL---REGRAFGVQTLSGTGA----LRVGAEFLH 98
E+L L L + D P + ++G F V + + +G E
Sbjct: 16 EFLKALAL----PEDLIKM-ARDIKPIVEIQQKGDDFVVTSKTPRQTVTNSFTLGKEA-- 68
Query: 99 RILNYTTFYYSK----PTWENHRLVFLNAGFTEARE 130
+ TT K N +LV + F+ +E
Sbjct: 69 ---DITTMDGKKLKCTVHLANGKLVTKSEKFSHEQE 101
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 25.8 bits (56), Expect = 3.7
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 128 AREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQQVAHMVDKHHVY 183
YR W P + + + + + ++ A T +A +VD+ +Y
Sbjct: 29 FDGYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIY 84
>d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus
vulgaris [TaxId: 585]}
Length = 384
Score = 25.3 bits (55), Expect = 7.5
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPE 137
A + A L +L T F + W N + ++A + Y NPE
Sbjct: 275 SFPAFK-NASQLIYLLRDTPFSVGESGWNNLKKAMVSA-------WIYSNPE 318
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.416
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 836,664
Number of extensions: 37564
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 17
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.2 bits)