BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6269
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 55/240 (22%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG C+ W S+DV TASI +LC I++DRY A+T P Y + +K A +IL V
Sbjct: 99 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILMV 157
Query: 62 WVLALVITCPPI-LGWYDKDRHRDKRCGYNQ-------NRGYVVFSGMGSFFIPLLVVLY 113
W+++ + + PI + WY C N+ N+ Y + S + SF++PL+++++
Sbjct: 158 WIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVF 217
Query: 114 VYARISCVIARRHNNLEALNHQHTLGRHELAKI-KLRVRFNYCKVIIIKKTHLVLPSSSI 172
VY+R+ + +L KI K RF+ + + S
Sbjct: 218 VYSRV-----------------FQEAKRQLQKIDKSEGRFH-------------VQNLSQ 247
Query: 173 MERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIV 232
+E+D R GLR + K +E K +TL +++G F CWLPFFIV
Sbjct: 248 VEQDGRTG----------HGLRRSSKFCL-----KEHKALKTLGIIMGTFTLCWLPFFIV 292
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 264 LFGNXXXXXXXXXXXXXXXXXNCFVMSLAVADWLVGIFVMPFAVALHITVPR---SDFRL 320
+FGN N F+ SLA AD ++G+ V+PF A HI + +F
Sbjct: 48 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA-HILMKMWTFGNFWC 106
Query: 321 AFW 323
FW
Sbjct: 107 EFW 109
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 55/240 (22%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG C+ W S+DV TASI +LC I++DRY A+T P Y + +K A +IL V
Sbjct: 76 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILMV 134
Query: 62 WVLALVITCPPI-LGWYDKDRHRDKRCGYNQ-------NRGYVVFSGMGSFFIPLLVVLY 113
W+++ + + PI + WY C N+ N+ Y + S + SF++PL+++++
Sbjct: 135 WIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVF 194
Query: 114 VYARISCVIARRHNNLEALNHQHTLGRHELAKI-KLRVRFNYCKVIIIKKTHLVLPSSSI 172
VY+R+ + +L KI K RF+ + + S
Sbjct: 195 VYSRV-----------------FQEAKRQLQKIDKSEGRFH-------------VQNLSQ 224
Query: 173 MERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIV 232
+E+D R GLR + K +E K +TL +++G F CWLPFFIV
Sbjct: 225 VEQDGRTG----------HGLRRSSKFCL-----KEHKALKTLGIIMGTFTLCWLPFFIV 269
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 264 LFGNXXXXXXXXXXXXXXXXXNCFVMSLAVADWLVGIFVMPFAVALHITVPR---SDFRL 320
+FGN N F+ SLA AD ++G+ V+PF A HI + +F
Sbjct: 25 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA-HILMKMWTFGNFWC 83
Query: 321 AFW 323
FW
Sbjct: 84 EFW 86
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 57/242 (23%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
+W FG C+ W S+DV TASI +LC I++DRY A+T P Y + +K A +IL
Sbjct: 247 TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILM 305
Query: 61 VWVLALVITCPPI-LGWYDKDRH-------RDKRCGYNQNRGYVVFSGMGSFFIPLLVVL 112
VW+++ + + PI + WY + C + N+ Y + S + SF++PL++++
Sbjct: 306 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMV 365
Query: 113 YVYARISCVIARRHNNLEALNHQHTLGRHELAKI-KLRVRFNYCKVIIIKKTHLVLPSSS 171
+VY+R+ + +L KI K RF+ + + S
Sbjct: 366 FVYSRV-----------------FQEAKRQLQKIDKSEGRFH-------------VQNLS 395
Query: 172 IMERDRRKSLASCSFSLQRSGLRLTDK-CTRVSSLKRESKTAQTLSVVVGGFIACWLPFF 230
+E+D R GLR + K C +E K +TL +++G F CWLPFF
Sbjct: 396 QVEQDGRTG----------HGLRRSSKFCL------KEHKALKTLGIIMGTFTLCWLPFF 439
Query: 231 IV 232
IV
Sbjct: 440 IV 441
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 264 LFGNXXXXXXXXXXXXXXXXXNCFVMSLAVADWLVGIFVMPFAVA--LHITVPRSDFRLA 321
+FGN N F+ SLA AD ++G+ V+PF A L T +F
Sbjct: 197 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCE 256
Query: 322 FW 323
FW
Sbjct: 257 FW 258
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 113/240 (47%), Gaps = 55/240 (22%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG C+ W S+DV TASI +LC I++DRY A+T P Y + +K A +IL V
Sbjct: 100 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILMV 158
Query: 62 WVLALVITCPPI-LGWYDKDRH-------RDKRCGYNQNRGYVVFSGMGSFFIPLLVVLY 113
W+++ + + PI + WY + C + N+ Y + S + SF++PL+++++
Sbjct: 159 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 218
Query: 114 VYARISCVIARRHNNLEALNHQHTLGRHELAKI-KLRVRFNYCKVIIIKKTHLVLPSSSI 172
VY+R+ + +L KI K RF+ + + S
Sbjct: 219 VYSRV-----------------FQEAKRQLQKIDKSEGRFH-------------VQNLSQ 248
Query: 173 MERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIV 232
+E+D R GLR + K +E K +TL +++G F CWLPFFIV
Sbjct: 249 VEQDGRTG----------HGLRRSSKFCL-----KEHKALKTLGIIMGTFTLCWLPFFIV 293
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 264 LFGNXXXXXXXXXXXXXXXXXNCFVMSLAVADWLVGIFVMPFAVALHITVPR---SDFRL 320
+FGN N F+ SLA AD ++G+ V+PF A HI + +F
Sbjct: 49 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA-HILMKMWTFGNFWC 107
Query: 321 AFW 323
FW
Sbjct: 108 EFW 110
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRS---KKLALYMI 58
W F I CD++V+LDV +CTASI +LCAISIDRY AV P+ Y T +++AL MI
Sbjct: 105 WNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVAL-MI 163
Query: 59 LCVWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARI 118
VWVLA ++CP + G+ + D N +V++S + SF++P V + VYARI
Sbjct: 164 TAVWVLAFAVSCPLLFGF---NTTGDPTVCSISNPDFVIYSSVVSFYLPFGVTVLVYARI 220
Query: 119 SCVIA--RRHNNLEAL 132
V+ RR N E L
Sbjct: 221 YVVLKQRRRKNIFEML 236
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 207 RESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSL 262
RE K Q +++V+G FI CWLPFF+ ++ N +SP L ++ TWLG ++ +L
Sbjct: 395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSAL 450
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%)
Query: 264 LFGNXXXXXXXXXXXXXXXXXNCFVMSLAVADWLVGIFVMPFAVALHIT 312
+FGN N V+SLAVAD LV VMP+ V L +T
Sbjct: 53 VFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVT 101
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG C+ W S+DV TASI +LC I++DRY A+T P Y + +K A +IL V
Sbjct: 75 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILMV 133
Query: 62 WVLALVITCPPI-LGWYDKDRH-------RDKRCGYNQNRGYVVFSGMGSFFIPLLVVLY 113
W+++ + + PI + WY + C + N+ Y + S + SF++PL+++++
Sbjct: 134 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 193
Query: 114 VYARISCVIARRHNNLEALNHQHTL 138
VY+R+ R+ N E L L
Sbjct: 194 VYSRVFQEAKRQLNIFEMLRIDEGL 218
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 207 RESKTAQTLSVVVGGFIACWLPFFIV 232
+E K +TL +++G F CWLPFFIV
Sbjct: 371 KEHKALKTLGIIMGTFTLCWLPFFIV 396
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 264 LFGNXXXXXXXXXXXXXXXXXNCFVMSLAVADWLVGIFVMPFAVA 308
+FGN N F+ SLA AD ++G+ V+PF A
Sbjct: 24 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA 68
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG C+ W S+DV TASI +LC I++DRY A+T P Y + +K A +IL V
Sbjct: 106 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILMV 164
Query: 62 WVLALVITCPPI-LGWYDKDRH-------RDKRCGYNQNRGYVVFSGMGSFFIPLLVVLY 113
W+++ + + PI + WY + C + N+ Y + S + SF++PL+++++
Sbjct: 165 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 224
Query: 114 VYARISCVIARRHNNLEAL 132
VY+R+ R+ N E L
Sbjct: 225 VYSRVFQEAKRQLNIFEML 243
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 207 RESKTAQTLSVVVGGFIACWLPFFIV 232
+E K +TL +++G F CWLPFFIV
Sbjct: 402 KEHKALKTLGIIMGTFTLCWLPFFIV 427
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 264 LFGNXXXXXXXXXXXXXXXXXNCFVMSLAVADWLVGIFVMPFAVALHITVPR---SDFRL 320
+FGN N F+ SLA AD ++G+ V+PF A HI + +F
Sbjct: 55 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA-HILMKMWTFGNFWC 113
Query: 321 AFW 323
FW
Sbjct: 114 EFW 116
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG C+ W S+DV TASI +LC I++DRY A+T P Y + +K A +IL V
Sbjct: 107 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILMV 165
Query: 62 WVLALVITCPPI-LGWYDKDRH-------RDKRCGYNQNRGYVVFSGMGSFFIPLLVVLY 113
W+++ + + PI + WY + C + N+ Y + S + SF++PL+++++
Sbjct: 166 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 225
Query: 114 VYARISCVIARRHNNLEAL 132
VY+R+ R+ N E L
Sbjct: 226 VYSRVFQEAKRQLNIFEML 244
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 207 RESKTAQTLSVVVGGFIACWLPFFIV 232
+E K +TL +++G F CWLPFFIV
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIV 428
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 264 LFGNXXXXXXXXXXXXXXXXXNCFVMSLAVADWLVGIFVMPFAVALHITVPR---SDFRL 320
+FGN N F+ SLA AD ++G+ V+PF A HI + +F
Sbjct: 56 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA-HILMKMWTFGNFWC 114
Query: 321 AFW 323
FW
Sbjct: 115 EFW 117
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG C+ W S+DV TASI +LC I++DRY A+T P Y + +K A +IL V
Sbjct: 107 WTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILMV 165
Query: 62 WVLALVITCPPI-LGWYDKDRH-------RDKRCGYNQNRGYVVFSGMGSFFIPLLVVLY 113
W+++ + + PI + WY + C + N+ Y + S + SF++PL+++++
Sbjct: 166 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 225
Query: 114 VYARISCVIARRHNNLEAL 132
VY+R+ R+ N E L
Sbjct: 226 VYSRVFQEAKRQLNIFEML 244
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 207 RESKTAQTLSVVVGGFIACWLPFFIV 232
+E K +TL +++G F CWLPFFIV
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIV 428
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 264 LFGNXXXXXXXXXXXXXXXXXNCFVMSLAVADWLVGIFVMPFAVALHITVPR---SDFRL 320
+FGN N F+ SLA AD ++G+ V+PF A HI + +F
Sbjct: 56 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA-HILMKMWTFGNFWC 114
Query: 321 AFW 323
FW
Sbjct: 115 EFW 117
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 77/127 (60%), Gaps = 11/127 (8%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTY-SRKTRSKKLALYMIL 59
+W +G LC++W SLDV TASI +LC I+IDRYLA+T P Y S TR++ A +I
Sbjct: 76 TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRAR--AKVIIC 133
Query: 60 CVWVLALVITCPPILG--WYDKDRHRDK------RCGYNQNRGYVVFSGMGSFFIPLLVV 111
VW ++ +++ PI+ W D+D K C + NR Y + S + SF+IPLL++
Sbjct: 134 TVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIM 193
Query: 112 LYVYARI 118
++V R+
Sbjct: 194 IFVALRV 200
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 198 KCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGK 257
K +RV L RE K +TL +++G F CWLPFF+V + N F + L + WLG
Sbjct: 218 KTSRVM-LMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF-NRDLVPDWLFVAFNWLGY 275
Query: 258 LSGSL 262
+ ++
Sbjct: 276 ANSAM 280
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 285 NCFVMSLAVADWLVGIFVMPFAVALHI 311
N F+ SLA AD +VG+ V+PF L +
Sbjct: 47 NLFITSLACADLVVGLLVVPFGATLVV 73
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 77/127 (60%), Gaps = 11/127 (8%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTY-SRKTRSKKLALYMIL 59
+W +G LC++W SLDV TASI +LC I+IDRYLA+T P Y S TR++ A +I
Sbjct: 76 TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRAR--AKVIIC 133
Query: 60 CVWVLALVITCPPILG--WYDKDRHRDK------RCGYNQNRGYVVFSGMGSFFIPLLVV 111
VW ++ +++ PI+ W D+D K C + NR Y + S + SF+IPLL++
Sbjct: 134 TVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIM 193
Query: 112 LYVYARI 118
++V R+
Sbjct: 194 IFVALRV 200
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 205 LKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSL 262
L RE K +TL +++G F CWLPFF+V + N F + L + WLG + ++
Sbjct: 222 LMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF-NRDLVPDWLFVAFNWLGYANSAM 278
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 285 NCFVMSLAVADWLVGIFVMPFAVALHI 311
N F+ SLA AD +VG+ V+PF L +
Sbjct: 47 NLFITSLACADLVVGLLVVPFGATLVV 73
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
+W FG C+ W S+DV TASI +LC I++DRY A+T P Y + +K A +IL
Sbjct: 70 TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILM 128
Query: 61 VWVLALVITCPPI-LGWYDKDRH-------RDKRCGYNQNRGYVVFSGMGSFFIPLLVVL 112
VW+++ + + PI + WY + C + N+ Y + S + SF++PL++++
Sbjct: 129 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMV 188
Query: 113 YVYARI 118
+VY+R+
Sbjct: 189 FVYSRV 194
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 207 RESKTAQTLSVVVGGFIACWLPFFIV 232
+E K +TL +++G F CWLPFFIV
Sbjct: 211 KEHKALKTLGIIMGTFTLCWLPFFIV 236
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 264 LFGNXXXXXXXXXXXXXXXXXNCFVMSLAVADWLVGIFVMPFAVALHI---TVPRSDFRL 320
+FGN N F+ SLA AD ++G+ V+PF A HI T +F
Sbjct: 20 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA-HILTKTWTFGNFWC 78
Query: 321 AFW 323
FW
Sbjct: 79 EFW 81
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W G ++CD+W++LD + AS+++L IS DRY VT+PLTY K R+ K+A MI
Sbjct: 89 WPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVK-RTTKMAGMMIAAA 147
Query: 62 WVLALVITCPPILGW---YDKDRHRDKRC--GYNQNRGYVVFSGMGSFFIPLLVVLYVYA 116
WVL+ ++ P IL W D C + N + + +F++P++++ +Y
Sbjct: 148 WVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYW 207
Query: 117 RISCVIARRHNNLEALNHQHTL 138
IS R N E L L
Sbjct: 208 HISRASKSRINIFEMLRIDEGL 229
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 114/278 (41%), Gaps = 50/278 (17%)
Query: 19 LCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYD 78
L +SI SL AI+IDRY+A+ PL Y+ + + +C WVL+ I P+LGW +
Sbjct: 112 LTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC-WVLSFAIGLTPMLGWNN 170
Query: 79 -----KDRHRDKRCGYNQ---------NRGYVV-FSGMGSFFIPLLVVLYVYARISCVIA 123
+ ++ + CG Q Y+V F+ +PLL++L VY RI
Sbjct: 171 CGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAAR 230
Query: 124 RR-----------HNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSI 172
R+ ++NL+ + + + A K+R + K P S
Sbjct: 231 RQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPE 290
Query: 173 MER------------DRRKSLASCSFSLQRSGLRLTDKCTRV-----------SSLKRES 209
M+ D LA+ + K TR S+L++E
Sbjct: 291 MKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEV 350
Query: 210 KTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPL 247
A++L+++VG F CWLP I+ F P + +PL
Sbjct: 351 HAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPL 388
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 285 NCFVMSLAVADWLVGIFVMPFAVAL 309
N FV+SLA AD VG+ +PFA+ +
Sbjct: 67 NYFVVSLAAADIAVGVLAIPFAITI 91
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W G + CD+W+S+D AS+++L IS DRY ++T+PLTY R R+ K A MI
Sbjct: 78 WALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTY-RAKRTTKRAGVMIGLA 136
Query: 62 WVLALVITCPPILGWYDKDRHRDKRCG-----YNQNRGYVVFSGMGSFFIPLLVVLYVYA 116
WV++ V+ P IL W R G + + + +F++P+ ++ +Y
Sbjct: 137 WVISFVLWAPAILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYW 196
Query: 117 RI 118
RI
Sbjct: 197 RI 198
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 205 LKRESKTAQTLSVVVGGFIACWLPFFIVYLANPF 238
L +E K AQTLS ++ FI W P+ I+ L N F
Sbjct: 366 LIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTF 399
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W G LC W+S+D TASI S+ + IDRY +V QPL Y K R+K A IL
Sbjct: 74 WSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRY-LKYRTKTRASATILGA 132
Query: 62 WVLALVITCPPILGW----YDKDRHRDKRC--GYNQNRGYVVFSGMGSFFIPLLVVLYVY 115
W L+ + PILGW R+ +C + + V + + +F++P L++L+ Y
Sbjct: 133 WFLSFLWVI-PILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFY 191
Query: 116 ARISCVIARRHNNLEAL 132
A+I + + N E L
Sbjct: 192 AKIYKAVRQHCNIFEML 208
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 205 LKRESKTAQTLSVVVGGFIACWLPFFIVYLANPF 238
+ RE K A+ L ++ FI CW+P+FI ++ F
Sbjct: 365 MNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAF 398
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 97/244 (39%), Gaps = 78/244 (31%)
Query: 19 LCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYD 78
L +SI SL AI+IDRY+A+ PL Y+ + + +C WVL+ I P+LGW +
Sbjct: 87 LTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC-WVLSFAIGLTPMLGWNN 145
Query: 79 -----KDRHRDKRCGYNQ---------NRGYVV-FSGMGSFFIPLLVVLYVYARISCVIA 123
+ + + CG Q Y+V F+ +PLL++L VY RI + A
Sbjct: 146 CGQPKEGKQHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIF-LAA 204
Query: 124 RRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLAS 183
RR L+ + Q G ER R
Sbjct: 205 RRQ--LKQMESQPLPG----------------------------------ERAR------ 222
Query: 184 CSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGT 243
S+L++E A++L+++VG F CWLP I+ F P +
Sbjct: 223 -------------------STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCS 263
Query: 244 ISPL 247
+PL
Sbjct: 264 HAPL 267
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 285 NCFVMSLAVADWLVGIFVMPFAVAL 309
N FV+SLA AD VG+ +PFA+ +
Sbjct: 42 NYFVVSLAAADIAVGVLAIPFAITI 66
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 52/231 (22%)
Query: 19 LCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYD 78
L +SI SL AI+IDRY+A+ PL Y+ + A + +C WVL+ I P+LGW +
Sbjct: 87 LAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAIC-WVLSFAIGLTPMLGWNN 145
Query: 79 KDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTL 138
+ ++ G N ++G G G +++C+
Sbjct: 146 CGQPKE---GKNHSQG----CGEG--------------QVACLF---------------- 168
Query: 139 GRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRR--KSLASCSFSLQRSGLRLT 196
++ + V FN+ +++ ++ I RR K + S +R+
Sbjct: 169 --EDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFAAARRQLKQMESQPLPGERAR---- 222
Query: 197 DKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPL 247
S+L++E A++ +++ G F CWLP I+ F P + +PL
Sbjct: 223 ------STLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDCSHAPL 267
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 285 NCFVMSLAVADWLVGIFVMPFAVAL 309
N FV+SLA AD LVG+ +PFA+ +
Sbjct: 42 NYFVVSLAAADILVGVLAIPFAITI 66
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 52/231 (22%)
Query: 19 LCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYD 78
L +SI SL AI+IDRY+A+ PL Y+ + + +C WVL+ I P+LGW +
Sbjct: 87 LTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC-WVLSFAIGLTPMLGWNN 145
Query: 79 KDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTL 138
+ ++ + ++Q G +++C+
Sbjct: 146 CGQPKEGK-AHSQGCGE--------------------GQVACLF---------------- 168
Query: 139 GRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRR--KSLASCSFSLQRSGLRLT 196
++ + V FN+ +++ ++ I RR K + S +R+
Sbjct: 169 --EDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERAR---- 222
Query: 197 DKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPL 247
S+L++E A++L+++VG F CWLP I+ F P + +PL
Sbjct: 223 ------STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPL 267
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 285 NCFVMSLAVADWLVGIFVMPFAVAL 309
N FV+S A AD LVG+ +PFA+A+
Sbjct: 42 NYFVVSAAAADILVGVLAIPFAIAI 66
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 19 LCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYD 78
L +SI SL AI+IDRY+A+ PL Y+ + + +C WVL+ I P+LGW +
Sbjct: 102 LTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC-WVLSFAIGLTPMLGWNN 160
Query: 79 -----KDRHRDKRCGYNQ---------NRGYVV-FSGMGSFFIPLLVVLYVYARISCVIA 123
+ ++ + CG Q Y+V F+ +PLL++L VY RI
Sbjct: 161 CGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAAR 220
Query: 124 RRHNNLEALNHQHTL 138
R+ N E L L
Sbjct: 221 RQLNIFEMLRIDEGL 235
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 203 SSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPL 247
S+L++E A++L+++VG F CWLP I+ F P + +PL
Sbjct: 385 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPL 429
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 240 PAGTISPLLSNSLTWLGKLS-GSLRLFGNXXXXXXXXXXXXXXXXXNCFVMSLAVADWLV 298
P G P++ +S+ +L+ L + GN N FV+SLA AD V
Sbjct: 12 PVGA-PPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAV 70
Query: 299 GIFVMPFAVAL 309
G+ +PFA+ +
Sbjct: 71 GVLAIPFAITI 81
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 8/173 (4%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG+ C ++ + SI+++ ISIDRY + +P+ S+K S + A MI+ V
Sbjct: 100 WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKM-SHRRAFIMIIFV 158
Query: 62 WVLALVITCPPILGWYDKDRHRDK-RCGYN------QNRGYVVFSGMGSFFIPLLVVLYV 114
W+ +++ PI GW C ++ R ++ + FF P+L++ +
Sbjct: 159 WLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFC 218
Query: 115 YARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVL 167
Y I ++ + A+ + A+ K+ I+ + +L
Sbjct: 219 YFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLL 271
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 8/173 (4%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG+ C ++ + SI+++ ISIDRY + +P+ S+K S + A MI+ V
Sbjct: 101 WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKM-SHRRAFIMIIFV 159
Query: 62 WVLALVITCPPILGWYDKDRHRDK-RCGYN------QNRGYVVFSGMGSFFIPLLVVLYV 114
W+ +++ PI GW C ++ R ++ + FF P+L++ +
Sbjct: 160 WLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFC 219
Query: 115 YARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVL 167
Y I ++ + A+ + A+ K+ I+ + +L
Sbjct: 220 YFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLL 272
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
+W FG ILC I +S+D SI +LC +S+DRY+AV P+ + R+ + A + +C
Sbjct: 81 TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVK-ALDFRTPRNAKIVNVC 139
Query: 61 VWVLALVITCPPILGWYDKDRHRDKRC 87
W+L+ I P + K R C
Sbjct: 140 NWILSSAIGLPVMFMATTKYRQGSIDC 166
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
W +G C + ASI S+ A++ DRY+A+ PL + R A +++C
Sbjct: 97 EWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL----QPRLSATATKVVIC 152
Query: 61 V-WVLALVITCPPILGWYDKDRHRDKR--CGYN--------QNRGYVVFSGMGSFFIPLL 109
V WVLAL++ P G+Y R C + Y + + +F+PLL
Sbjct: 153 VIWVLALLLAFPQ--GYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLL 210
Query: 110 VVLYVYARIS 119
V+ Y Y +
Sbjct: 211 VIGYAYTVVG 220
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 26 SLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK 85
SL ++I+RY+ V +P++ R + A+ + WV+AL PP++GW R+ +
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENH--AIMGVAFTWVMALACAAPPLVGW---SRYIPE 182
Query: 86 ----RCGYN--------QNRGYVVFSGMGSFFIPLLVVLYVYARI 118
CG + N +V++ + F IPL+V+ + Y ++
Sbjct: 183 GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 26 SLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK 85
SL ++I+RY+ V +P++ R + A+ + WV+AL PP++GW R+ +
Sbjct: 127 SLVVLAIERYVVVCKPMSNFRFGENH--AIMGVAFTWVMALACAAPPLVGW---SRYIPE 181
Query: 86 ----RCGYN--------QNRGYVVFSGMGSFFIPLLVVLYVYARI 118
CG + N +V++ + F IPL+V+ + Y ++
Sbjct: 182 GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 226
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
+W FG +LC +S+D SI +L +S+DRY+AV P+ + R+ A + +C
Sbjct: 78 TWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVK-ALDFRTPAKAKLINIC 136
Query: 61 VWVLALVITCP 71
+WVLA + P
Sbjct: 137 IWVLASGVGVP 147
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 26 SLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK 85
SL ++I+RY+ V +P++ R + A+ + WV+AL PP++GW R+ +
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENH--AIMGVAFTWVMALACAAPPLVGW---SRYIPE 182
Query: 86 ----RCGYN--------QNRGYVVFSGMGSFFIPLLVVLYVYARI 118
CG + N +V++ + F IPL+V+ + Y ++
Sbjct: 183 GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 26 SLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK 85
SL ++I+RY+ V +P++ R + A+ + WV+AL PP++GW R+ +
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENH--AIMGVAFTWVMALACAAPPLVGW---SRYIPE 182
Query: 86 ----RCGYN--------QNRGYVVFSGMGSFFIPLLVVLYVYARI 118
CG + N +V++ + F IPL+V+ + Y ++
Sbjct: 183 GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 26 SLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK 85
SL ++I+RY+ V +P++ R + A+ + WV+AL PP++GW R+ +
Sbjct: 127 SLVVLAIERYVVVCKPMSNFRFGENH--AIMGVAFTWVMALACAAPPLVGW---SRYIPE 181
Query: 86 ----RCGYN--------QNRGYVVFSGMGSFFIPLLVVLYVYARI 118
CG + N +V++ + F IPL+V+ + Y ++
Sbjct: 182 GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 226
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 26 SLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK 85
SL ++I+RY+ V +P++ R + A+ + WV+AL PP++GW R+ +
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENH--AIMGVAFTWVMALACAAPPLVGW---SRYIPE 182
Query: 86 ----RCGYN--------QNRGYVVFSGMGSFFIPLLVVLYVYARI 118
CG + N +V++ + F IPL+V+ + Y ++
Sbjct: 183 GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
SW FG +LC I +S+D SI +L +S+DRY+AV P+ + R+ A + +C
Sbjct: 86 SWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVK-ALDFRTPLKAKIINIC 144
Query: 61 VWVLA 65
+W+L+
Sbjct: 145 IWLLS 149
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W+FG LC + C ASIL + ISIDR+LAV P+ S R+ A + L +
Sbjct: 86 WQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQ-SLSWRTLGRASFTCLAI 144
Query: 62 WVLALVITCPPIL 74
W LA+ P +L
Sbjct: 145 WALAIAGVVPLLL 157
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPL-TYSRKTRSKKLALYMILC 60
W FG LC +++D S +L A+S+DRY+A+ P+ +T SK A+ +
Sbjct: 190 WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNV--A 247
Query: 61 VWVLALVITCPPILGWYDKDRHRDKRC----GYNQNRGYVVFS---GMGSFFIPLLVVLY 113
+W LA V+ P + + + C Q+ VF+ + SF +P+LV+
Sbjct: 248 IWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISV 307
Query: 114 VYA 116
Y+
Sbjct: 308 CYS 310
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 16/141 (11%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
+W FG LC + +S+ L IS+DRYLA+ T S++ R + +
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHA-TNSQRPRKLLAEKVVYVG 169
Query: 61 VWVLALVITCPPILGWYDKDRHRDKR--CG--YNQNRGYVVFSG---MGSFFIPLLVVLY 113
VW+ AL++T P + + D R C Y + VVF M +P +V+L
Sbjct: 170 VWIPALLLTIPDFI--FANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILS 227
Query: 114 VYARISCVIARR--HNNLEAL 132
Y C+I + HN E L
Sbjct: 228 CY----CIIISKLSHNIFEML 244
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 21 TASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV-WVLALVITCPPILGW 76
+AS+ SL AI+I+RY+ + L S L++++ WV++L++ PI+GW
Sbjct: 147 SASVFSLLAIAIERYITM---LKMKLHNGSNNFRLFLLISACWVISLILGGLPIMGW 200
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 213 QTLSVVVGGFIACWLPFFIVYLAN 236
+T+ +V+ FIACW P FI+ L +
Sbjct: 421 KTVIIVLSVFIACWAPLFILLLLD 444
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
+W FG LC + +S+ L IS+DRYLA+ T S++ R + +
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHA-TNSQRPRKLLAEKVVYVG 169
Query: 61 VWVLALVITCPPIL 74
VW+ AL++T P +
Sbjct: 170 VWIPALLLTIPDFI 183
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
+W FG LC + +S+ L IS+DRYLA+ T S++ R + +
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHA-TNSQRPRKLLAEKVVYVG 169
Query: 61 VWVLALVITCPPIL 74
VW+ AL++T P +
Sbjct: 170 VWIPALLLTIPDFI 183
>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 21 TASILSLCAISIDRYLAVTQPLTYSRK 47
T+SI+ LCAIS+DRY ++TQ + Y+ K
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLK 27
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
W FG LC + L + IL L IS+DRYLA+ ++ +T ++K L +C
Sbjct: 74 GWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAI----VHATRTLTQKRHLVKFVC 129
Query: 61 V--WVLALVITCPPIL 74
+ W L++ ++ P L
Sbjct: 130 LGCWGLSMNLSLPFFL 145
>pdb|1HOF|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 22 ASILSLCAISIDRYLAVTQPLTYSRK 47
+SI+ LCAIS+DRY ++TQ + Y+ K
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLK 27
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPL---TYSRKTRSKKLALYMI 58
W FG C + L A+ L++ ++S+ RYLA+ P T ++R+KK I
Sbjct: 103 WAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKF----I 158
Query: 59 LCVWVLALVITCPPILGWYDKDRHRD 84
+W+ + ++ P + ++R D
Sbjct: 159 SAIWLASALLAIPMLFTMGLQNRSAD 184
>pdb|1HO9|A Chain A, Best 20 Nmr Conformers Of D130i Mutant T3-I2, A 32
Residue Peptide From The Alpha 2a Adrenergic Receptor
pdb|1HOD|A Chain A, Nmr Structure Of D130i Mutant T3-I2, A 32 Residue
Peptide From The Alpha 2a Adrenergic Receptor
Length = 32
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 22 ASILSLCAISIDRYLAVTQPLTYSRK 47
+SI+ LCAIS+ RY ++TQ + Y+ K
Sbjct: 2 SSIVHLCAISLIRYWSITQAIEYNLK 27
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast
Mitochondrial Threonyl- Trna Synthetase Determined At
2.1 Angstrom Resolution
pdb|3UGT|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UH0|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Threonyl Sulfamoyl
Adenylate
pdb|4EO4|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
Length = 460
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 145 KIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFS 187
+IK + NY +II+ + L +I ERD RKS + S
Sbjct: 404 RIKSAILKNYSYLIIVGDEEVQLQKYNIRERDNRKSFEKLTMS 446
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.138 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,402,745
Number of Sequences: 62578
Number of extensions: 322815
Number of successful extensions: 683
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 105
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.6 bits)