Query psy6269
Match_columns 366
No_of_seqs 134 out of 1659
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 22:04:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4220|consensus 100.0 1.6E-36 3.5E-41 275.0 11.3 289 1-335 95-494 (503)
2 KOG4219|consensus 100.0 7.9E-33 1.7E-37 251.7 10.1 216 1-329 100-336 (423)
3 PHA03234 DNA packaging protein 100.0 9.8E-32 2.1E-36 252.2 15.2 204 1-329 97-317 (338)
4 PHA02834 chemokine receptor-li 100.0 2.9E-31 6.2E-36 248.5 14.0 211 1-335 90-316 (323)
5 PHA03235 DNA packaging protein 100.0 2.2E-29 4.7E-34 241.6 17.4 203 3-329 99-324 (409)
6 PHA02638 CC chemokine receptor 100.0 1.7E-28 3.7E-33 236.3 18.5 211 1-334 160-403 (417)
7 PHA03087 G protein-coupled che 99.9 5.6E-27 1.2E-31 220.9 17.7 209 1-331 103-326 (335)
8 PF00001 7tm_1: 7 transmembran 99.9 3.6E-26 7.7E-31 205.2 14.8 200 1-265 49-255 (257)
9 KOG2087|consensus 99.7 1.2E-18 2.6E-23 157.8 1.8 205 2-329 98-307 (363)
10 PF10324 7TM_GPCR_Srw: Serpent 99.5 1.5E-13 3.1E-18 128.7 13.2 206 10-327 79-316 (318)
11 PF10320 7TM_GPCR_Srsx: Serpen 99.4 6.7E-12 1.5E-16 113.6 16.3 197 6-326 58-257 (257)
12 PF10323 7TM_GPCR_Srv: Serpent 99.3 2.6E-11 5.7E-16 111.3 13.2 206 8-327 74-282 (283)
13 PF10328 7TM_GPCR_Srx: Serpent 99.1 3.1E-09 6.7E-14 97.3 17.5 194 12-326 70-273 (274)
14 PF05296 TAS2R: Mammalian tast 98.8 2.5E-07 5.4E-12 85.7 18.0 211 5-327 78-300 (303)
15 PF05462 Dicty_CAR: Slime mold 98.6 3.9E-06 8.4E-11 77.3 18.5 80 5-91 71-150 (303)
16 PF10321 7TM_GPCR_Srt: Serpent 98.5 3.9E-06 8.5E-11 77.7 13.6 201 5-327 96-306 (313)
17 PF03402 V1R: Vomeronasal orga 98.2 1.7E-06 3.7E-11 77.7 4.7 196 3-265 42-250 (265)
18 PF10317 7TM_GPCR_Srd: Serpent 98.2 0.00036 7.8E-09 64.5 19.8 183 4-265 77-277 (292)
19 PF02101 Ocular_alb: Ocular al 98.1 0.00018 3.9E-09 66.6 16.2 183 7-265 114-301 (405)
20 PF02118 Srg: Srg family chemo 98.1 5E-05 1.1E-09 69.4 12.4 118 7-126 79-199 (275)
21 KOG4219|consensus 97.8 1.2E-05 2.6E-10 74.8 3.2 44 262-305 48-91 (423)
22 KOG4193|consensus 97.8 0.00038 8.2E-09 70.0 13.9 107 8-123 385-493 (610)
23 PF10327 7TM_GPCR_Sri: Serpent 97.8 0.0033 7.1E-08 58.4 18.2 179 12-265 93-290 (303)
24 KOG4220|consensus 97.7 4.7E-06 1E-10 77.5 -0.9 48 258-305 39-86 (503)
25 PF10292 7TM_GPCR_Srab: Serpen 97.7 0.0044 9.6E-08 58.1 18.5 63 4-68 91-153 (324)
26 PHA03234 DNA packaging protein 97.7 2.3E-05 5E-10 73.9 3.0 69 255-326 38-108 (338)
27 PF00001 7tm_1: 7 transmembran 97.4 5.5E-05 1.2E-09 67.2 1.8 59 266-325 1-59 (257)
28 PF11710 Git3: G protein-coupl 97.4 0.0021 4.6E-08 55.8 10.6 121 5-128 70-200 (201)
29 PF03125 Sre: C. elegans Sre G 97.3 0.0092 2E-07 56.9 15.3 36 12-47 126-161 (365)
30 PF10318 7TM_GPCR_Srh: Serpent 97.2 0.022 4.8E-07 52.7 16.3 65 8-75 84-148 (302)
31 PF10326 7TM_GPCR_Str: Serpent 97.2 0.00016 3.6E-09 67.2 1.6 187 3-265 76-293 (307)
32 PF02117 7TM_GPCR_Sra: Serpent 97.0 0.029 6.3E-07 52.7 15.4 42 3-44 95-136 (328)
33 PHA02638 CC chemokine receptor 97.0 0.00042 9.1E-09 67.3 3.1 49 257-307 106-154 (417)
34 PHA02834 chemokine receptor-li 97.0 0.00069 1.5E-08 63.5 3.8 50 255-306 34-83 (323)
35 PF04789 DUF621: Protein of un 96.9 0.12 2.6E-06 46.2 17.1 112 11-124 92-215 (305)
36 PHA03235 DNA packaging protein 96.9 0.00082 1.8E-08 65.1 3.6 52 254-306 37-90 (409)
37 PF02076 STE3: Pheromone A rec 96.4 0.36 7.9E-06 44.2 17.2 90 7-97 57-148 (283)
38 PF10320 7TM_GPCR_Srsx: Serpen 96.4 0.0024 5.2E-08 57.8 2.7 48 262-309 3-50 (257)
39 PF10322 7TM_GPCR_Sru: Serpent 96.2 0.26 5.6E-06 45.7 15.4 115 10-126 104-226 (307)
40 PF11970 Git3_C: G protein-cou 96.2 0.027 5.9E-07 40.5 6.8 62 204-265 3-65 (76)
41 KOG4564|consensus 96.0 0.085 1.8E-06 51.3 11.4 112 5-124 225-336 (473)
42 PHA03087 G protein-coupled che 95.7 0.01 2.3E-07 55.7 4.0 44 261-306 52-95 (335)
43 PF02175 7TM_GPCR_Srb: Serpent 95.3 0.38 8.3E-06 42.2 11.6 43 5-47 81-123 (236)
44 PF00002 7tm_2: 7 transmembran 95.1 0.0056 1.2E-07 54.7 0.0 99 8-118 71-169 (242)
45 PF10319 7TM_GPCR_Srj: Serpent 95.1 0.54 1.2E-05 43.3 12.6 61 203-265 236-297 (310)
46 PF10316 7TM_GPCR_Srbc: Serpen 95.0 0.72 1.6E-05 42.0 13.3 31 18-48 90-120 (273)
47 PF03383 Serpentine_r_xa: Caen 93.5 0.03 6.5E-07 45.9 0.8 77 13-90 48-129 (153)
48 PF01534 Frizzled: Frizzled/Sm 92.6 9 0.0002 35.9 20.7 85 4-91 89-173 (328)
49 PF06681 DUF1182: Protein of u 92.2 0.71 1.5E-05 39.6 7.4 110 6-124 114-224 (226)
50 PF13853 7tm_4: Olfactory rece 85.2 0.058 1.3E-06 44.1 -3.9 87 55-141 4-103 (144)
51 KOG2087|consensus 82.4 0.72 1.6E-05 43.0 1.6 67 254-326 29-95 (363)
52 PF10324 7TM_GPCR_Srw: Serpent 67.3 3.3 7.1E-05 38.5 1.8 34 274-307 20-54 (318)
53 PF10325 7TM_GPCR_Srz: Serpent 58.6 1.4E+02 0.003 26.8 13.2 111 15-127 88-198 (267)
54 PF05462 Dicty_CAR: Slime mold 54.8 13 0.00028 34.5 3.3 48 255-302 12-59 (303)
55 PF10328 7TM_GPCR_Srx: Serpent 49.8 9 0.0002 34.7 1.5 44 260-303 4-47 (274)
56 PF15050 SCIMP: SCIMP protein 49.6 73 0.0016 24.9 6.0 32 97-129 10-41 (133)
57 KOG2765|consensus 42.6 3.1E+02 0.0068 26.2 11.3 28 206-233 153-180 (416)
58 PF09889 DUF2116: Uncharacteri 35.6 54 0.0012 22.2 3.1 24 204-227 31-54 (59)
59 PF00002 7tm_2: 7 transmembran 35.2 22 0.00047 31.4 1.5 48 254-301 5-52 (242)
60 COG1862 YajC Preprotein transl 32.5 70 0.0015 24.1 3.6 30 105-134 13-42 (97)
61 PF05296 TAS2R: Mammalian tast 28.0 82 0.0018 29.1 4.1 48 253-301 10-61 (303)
62 PF11710 Git3: G protein-coupl 26.1 54 0.0012 28.3 2.4 25 277-301 29-53 (201)
63 PF01528 Herpes_glycop: Herpes 26.0 2.8E+02 0.006 26.6 7.2 42 93-134 299-340 (374)
64 KOG2575|consensus 25.8 68 0.0015 30.8 3.1 26 207-232 253-278 (510)
65 TIGR00739 yajC preprotein tran 24.4 1E+02 0.0023 22.4 3.3 29 106-134 7-36 (84)
66 PF02699 YajC: Preprotein tran 23.6 1.7E+02 0.0037 21.2 4.3 26 108-133 9-34 (82)
67 PRK06531 yajC preprotein trans 21.9 1.1E+02 0.0024 23.8 3.1 28 105-132 6-33 (113)
No 1
>KOG4220|consensus
Probab=100.00 E-value=1.6e-36 Score=275.03 Aligned_cols=289 Identities=29% Similarity=0.434 Sum_probs=201.7
Q ss_pred CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD 80 (366)
Q Consensus 1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~ 80 (366)
.|++|..+|.++..+.++...+|++++.+|++|||+.|.+|+.|+.+. |+++|.++|++.|++++++..|-++.|....
T Consensus 95 ~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakR-TtkrA~~MI~~AW~iSfiLWaPaIl~Wqyiv 173 (503)
T KOG4220|consen 95 YWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKR-TTKRAGLMIGAAWVLSFVLWAPAILFWQYIV 173 (503)
T ss_pred ccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccc-cchHHHHHHHHHHHHHHHHHHHHHHhhHhhe
Confidence 599999999999999999999999999999999999999999999998 7788999999999999999999888884433
Q ss_pred C---CCCCcccccC--CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhh-------HhHhh
Q psy6269 81 R---HRDKRCGYNQ--NRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHEL-------AKIKL 148 (366)
Q Consensus 81 ~---~~~~~C~~~~--~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~-------~~~~~ 148 (366)
+ ...+.|..++ +........+..|.+|..+|.++|.+|++..+++.+.....+.......... .+...
T Consensus 174 GkrTv~~~eC~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~ 253 (503)
T KOG4220|consen 174 GKRTVPDGECYIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKS 253 (503)
T ss_pred eeeecCCCceEEEeecCceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccC
Confidence 3 2478897654 4445566777889999999999999999999999888777665421111000 00000
Q ss_pred hhcccccc-----------------------------------ee---eeccccccCCCCc----------------ccc
Q psy6269 149 RVRFNYCK-----------------------------------VI---IIKKTHLVLPSSS----------------IME 174 (366)
Q Consensus 149 ~~~~~~~~-----------------------------------~~---~~~~~~~~~~~~~----------------~~~ 174 (366)
+..+.+.+ +. .....+.+.+.+. ..+
T Consensus 254 s~r~~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D 333 (503)
T KOG4220|consen 254 SGRSSPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVD 333 (503)
T ss_pred CCCCCCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCC
Confidence 00000000 00 0000000000000 000
Q ss_pred ccc-------ccccc-----ccc----------cccc---ccCCcc--------------------ccccccchhhhhhH
Q psy6269 175 RDR-------RKSLA-----SCS----------FSLQ---RSGLRL--------------------TDKCTRVSSLKRES 209 (366)
Q Consensus 175 ~~~-------~~~~~-----~~~----------~~~~---~~~~~~--------------------~~~~~~~~~~~~~~ 209 (366)
.+. ..++. ... ..+. .+..+. +...+.+....+|+
T Consensus 334 ~~~~~~~i~i~~~~~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rEr 413 (503)
T KOG4220|consen 334 EEGLNTLIQIPTDQMLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRER 413 (503)
T ss_pred ccccccccccccccCCCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHH
Confidence 000 00000 000 0000 000010 11111223337899
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHH
Q psy6269 210 KTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVM 289 (366)
Q Consensus 210 k~~k~l~~v~~~f~vcwlP~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~ 289 (366)
|++|++.++.++|++||.||.|+.++..+|. ++++..+..+..||.|+||.+||+
T Consensus 414 KAAkTLsAILlAFIiTWtPYNImVlv~tFC~-~CiP~tlW~~gYwLCYINSTiNP~------------------------ 468 (503)
T KOG4220|consen 414 KAAKTLSAILLAFILTWTPYNIMVLVNTFCK-NCIPETLWTFGYWLCYINSTINPL------------------------ 468 (503)
T ss_pred HHHHHHHHHHHHHHHHcccceeeeehHhhcc-cccchhHhhhhhheeeecccccHH------------------------
Confidence 9999999999999999999999999999984 567889999999999999999999
Q ss_pred HHHHHHHHhhhhccceEEEeeccccchhHHHHHHHHhhhhcccccc
Q psy6269 290 SLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSRR 335 (366)
Q Consensus 290 ~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~~~~~~~~~~~~ 335 (366)
.|++ +|..||+.|++++.+.+++.+.
T Consensus 469 ----------------CYAL----CNatFrkTfk~lL~Cr~~~~~~ 494 (503)
T KOG4220|consen 469 ----------------CYAL----CNATFRKTFKRLLLCRWKKRRT 494 (503)
T ss_pred ----------------HHHH----HhHHHHHHHHHhheeeecccch
Confidence 9999 9999999999999666665553
No 2
>KOG4219|consensus
Probab=99.98 E-value=7.9e-33 Score=251.71 Aligned_cols=216 Identities=25% Similarity=0.423 Sum_probs=175.4
Q ss_pred CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD 80 (366)
Q Consensus 1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~ 80 (366)
+|.||.++|++..|+...+..+|++++++||+|||+||.+|++ .+. +++.+..+++++|++++++++|..+......
T Consensus 100 ~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~--~r~-s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~ 176 (423)
T KOG4219|consen 100 EWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQ--PRP-SRRSSKIIILLIWALALLLALPQLLYSSVEE 176 (423)
T ss_pred ccccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcc--cCC-CCcceeehhHHHHHHHHHHhccceeeeeeEE
Confidence 6999999999999999999999999999999999999999998 344 8999999999999999999999888652222
Q ss_pred C-----CCCCcccccC---------C----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchh
Q psy6269 81 R-----HRDKRCGYNQ---------N----RGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHE 142 (366)
Q Consensus 81 ~-----~~~~~C~~~~---------~----~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~ 142 (366)
. .....|...+ . ..|...+.++.+++|++++.++|..|.+++|..+...+..
T Consensus 177 ~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~---------- 246 (423)
T KOG4219|consen 177 LYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQ---------- 246 (423)
T ss_pred eeccCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchh----------
Confidence 1 1234453222 1 1277788899999999999999999999999764211110
Q ss_pred hHhHhhhhcccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHH
Q psy6269 143 LAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGF 222 (366)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f 222 (366)
.+.....+.++|+.||+++|++.|
T Consensus 247 --------------------------------------------------------d~~~~~~kak~K~vkmliiVV~~F 270 (423)
T KOG4219|consen 247 --------------------------------------------------------DRKHEQLKAKKKVVKMLIIVVVIF 270 (423)
T ss_pred --------------------------------------------------------chhhHHHHHHHHHHHHHHHHHHHH
Confidence 022345678999999999999999
Q ss_pred HHhchhHHHHHHHhhhCCCC---CCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhh
Q psy6269 223 IACWLPFFIVYLANPFLPAG---TISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVG 299 (366)
Q Consensus 223 ~vcwlP~~i~~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (366)
.+||+||.++.++....++- .....++....||+..|+++||+
T Consensus 271 aicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPi---------------------------------- 316 (423)
T KOG4219|consen 271 AICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPI---------------------------------- 316 (423)
T ss_pred HHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccH----------------------------------
Confidence 99999999999998654321 12345677889999999999999
Q ss_pred hhccceEEEeeccccchhHHHHHHHHhhhh
Q psy6269 300 IFVMPFAVALHITVPRSDFRLAFWRLTLKH 329 (366)
Q Consensus 300 ~~~~~~iy~~~~~~~~~~fR~~~~~~~~~~ 329 (366)
||++ .|+.||..+++.|+.+
T Consensus 317 ------IY~~----lN~Rfr~gf~~~fr~c 336 (423)
T KOG4219|consen 317 ------IYCF----LNKRFRGGFRRAFRWC 336 (423)
T ss_pred ------hhhh----hHHHHHHHHhhhhhee
Confidence 9999 9999999999999533
No 3
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.97 E-value=9.8e-32 Score=252.24 Aligned_cols=204 Identities=14% Similarity=0.199 Sum_probs=155.3
Q ss_pred CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD 80 (366)
Q Consensus 1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~ 80 (366)
+|+||+++|++..++.....++|++++++||+|||++|++|.+++. +++++..++++.|+.+++.++|+++......
T Consensus 97 ~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~---~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~ 173 (338)
T PHA03234 97 LFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK---KNNHIGRNIGILFLASAMCAIPAALFVKTEG 173 (338)
T ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh---hhhhHHHHHHHHHHHHHHHHhhHhHeeeeee
Confidence 5999999999999999999999999999999999999999997532 3333445666679999999999876543222
Q ss_pred CC-CCCcccccCC--cchhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhc
Q psy6269 81 RH-RDKRCGYNQN--RGYVV------FSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVR 151 (366)
Q Consensus 81 ~~-~~~~C~~~~~--~~~~~------~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (366)
.. +...|...+. ..+.. ....+.+++|+++|++||.+|.+++++.+
T Consensus 174 ~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~------------------------- 228 (338)
T PHA03234 174 KKGNYGKCNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT------------------------- 228 (338)
T ss_pred cCCCCCcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------------
Confidence 22 2357865442 22222 12233578999999999999998886521
Q ss_pred ccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHH
Q psy6269 152 FNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFI 231 (366)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i 231 (366)
.++++|++||+++++++|++||+||++
T Consensus 229 -----------------------------------------------------~~~~~k~~k~i~~vv~vF~iCWlPy~i 255 (338)
T PHA03234 229 -----------------------------------------------------EKKHKKTLFFIRILILSFLCIQIPNIA 255 (338)
T ss_pred -----------------------------------------------------hhhhhhhhhHHHHHHHHHHHHHhHHHH
Confidence 034678999999999999999999999
Q ss_pred HHHHhhhC---C-CCCC----ChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhcc
Q psy6269 232 VYLANPFL---P-AGTI----SPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVM 303 (366)
Q Consensus 232 ~~~~~~~~---~-~~~~----~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (366)
..++..+. . .+.. ......+..+++++|||+||+
T Consensus 256 v~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPi-------------------------------------- 297 (338)
T PHA03234 256 ILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPL-------------------------------------- 297 (338)
T ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHH--------------------------------------
Confidence 88764432 1 1111 123456778899999999999
Q ss_pred ceEEEeeccccchhHHHHHHHHhhhh
Q psy6269 304 PFAVALHITVPRSDFRLAFWRLTLKH 329 (366)
Q Consensus 304 ~~iy~~~~~~~~~~fR~~~~~~~~~~ 329 (366)
+|++ .+++||+++++++++.
T Consensus 298 --IY~f----~~~~FR~~~~~~~~~~ 317 (338)
T PHA03234 298 --VYAF----TGGDFRLRFTACFQDF 317 (338)
T ss_pred --HHHH----hhHHHHHHHHHHHHHH
Confidence 9999 9999999999988664
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.97 E-value=2.9e-31 Score=248.54 Aligned_cols=211 Identities=21% Similarity=0.415 Sum_probs=161.6
Q ss_pred CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD 80 (366)
Q Consensus 1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~ 80 (366)
+|.+|+..|++..++...+..+|++++++||+|||++|++|++++.. +.+++..+++++|+++++.++|+++++....
T Consensus 90 ~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~--~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~ 167 (323)
T PHA02834 90 EWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNK--SISLSVLLSVAAWVCSVILSMPAMVLYYVDN 167 (323)
T ss_pred CcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccCC--ccchHHHHHHHHHHHHHHHHhhHHHHHHhcc
Confidence 59999999999999999999999999999999999999999986442 4566777888999999999999887654333
Q ss_pred CCCCCcccccCC-cc------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhccc
Q psy6269 81 RHRDKRCGYNQN-RG------YVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFN 153 (366)
Q Consensus 81 ~~~~~~C~~~~~-~~------~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (366)
..+...|..... .. +.....++.+++|+++|+++|.+|+++++++++
T Consensus 168 ~~~~~~C~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~-------------------------- 221 (323)
T PHA02834 168 TDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN-------------------------- 221 (323)
T ss_pred CCCceEEeccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------------------------
Confidence 333456853221 11 112234678999999999999999998876421
Q ss_pred ccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHH
Q psy6269 154 YCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVY 233 (366)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~ 233 (366)
++++|.+||+++++++|++||+||.+..
T Consensus 222 ----------------------------------------------------~~~~k~~k~~~~vv~~F~icWlPy~i~~ 249 (323)
T PHA02834 222 ----------------------------------------------------KNKTRSIKIILTVVTFTVVFWVPFNIVL 249 (323)
T ss_pred ----------------------------------------------------cccceEEeehhHHHHHHHHHHhhHHHHH
Confidence 1245778999999999999999999998
Q ss_pred HHhhhCCCCCC-------Ch--HHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccc
Q psy6269 234 LANPFLPAGTI-------SP--LLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMP 304 (366)
Q Consensus 234 ~~~~~~~~~~~-------~~--~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (366)
++..+.+.+.. .. ....+..+++++||++||+
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPi--------------------------------------- 290 (323)
T PHA02834 250 FINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPI--------------------------------------- 290 (323)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHH---------------------------------------
Confidence 87554321110 11 1234667899999999999
Q ss_pred eEEEeeccccchhHHHHHHHHhhhhcccccc
Q psy6269 305 FAVALHITVPRSDFRLAFWRLTLKHCNKSRR 335 (366)
Q Consensus 305 ~iy~~~~~~~~~~fR~~~~~~~~~~~~~~~~ 335 (366)
+|++ .+++||+++++++++.++...|
T Consensus 291 -IY~~----~~~~fR~~~~~~~~~~~~~~~~ 316 (323)
T PHA02834 291 -IYAF----VGKNFKKVFKNMFCRTNNIFIR 316 (323)
T ss_pred -HHHH----hcHHHHHHHHHHHHhhhhhhhc
Confidence 9999 9999999999998655544333
No 5
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.96 E-value=2.2e-29 Score=241.58 Aligned_cols=203 Identities=15% Similarity=0.195 Sum_probs=157.6
Q ss_pred cccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccc----
Q psy6269 3 EFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYD---- 78 (366)
Q Consensus 3 ~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~---- 78 (366)
..|+.+|++..++...+..+|++++++||+|||++|++|.++. .. +++++..+++++|++++++++|+.+....
T Consensus 99 ~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~-~~-~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~ 176 (409)
T PHA03235 99 SGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRAR-SS-AYRSTYKILGLTWFASLICSGPAPVYTTVVAHD 176 (409)
T ss_pred cCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhcc-Cc-ccchhhhhHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4457899999999999999999999999999999999998643 33 57778889999999999999997653211
Q ss_pred -cC--CCCCCcccccCCc--------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHh
Q psy6269 79 -KD--RHRDKRCGYNQNR--------GYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIK 147 (366)
Q Consensus 79 -~~--~~~~~~C~~~~~~--------~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~ 147 (366)
.. ..+...|...+.. .|.....++.|++|+++|++||.+|+++++++.+
T Consensus 177 ~~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~-------------------- 236 (409)
T PHA03235 177 DVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY-------------------- 236 (409)
T ss_pred ccCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------------
Confidence 11 1234568543211 2344566677999999999999999999886532
Q ss_pred hhhcccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhch
Q psy6269 148 LRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWL 227 (366)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwl 227 (366)
++++|..+++++++++|++||+
T Consensus 237 ----------------------------------------------------------~~~~k~~~~v~iivv~F~iCWl 258 (409)
T PHA03235 237 ----------------------------------------------------------KKRSRTLTFVCILLLSFLCLQT 258 (409)
T ss_pred ----------------------------------------------------------hcchhhhhhHHHHHHHHHHHHh
Confidence 2245678899999999999999
Q ss_pred hHHHHHHHhhhCCC----C-C---CChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhh
Q psy6269 228 PFFIVYLANPFLPA----G-T---ISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVG 299 (366)
Q Consensus 228 P~~i~~~~~~~~~~----~-~---~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (366)
||.++.++..+... . . .......+..+++++||++||+
T Consensus 259 Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPi---------------------------------- 304 (409)
T PHA03235 259 PFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPI---------------------------------- 304 (409)
T ss_pred HHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHH----------------------------------
Confidence 99998887543211 1 1 1234566778899999999999
Q ss_pred hhccceEEEeeccccchhHHHHHHHHhhhh
Q psy6269 300 IFVMPFAVALHITVPRSDFRLAFWRLTLKH 329 (366)
Q Consensus 300 ~~~~~~iy~~~~~~~~~~fR~~~~~~~~~~ 329 (366)
+|++ ++++||+++++.+++.
T Consensus 305 ------IY~~----~~~~FRk~~~~~l~~~ 324 (409)
T PHA03235 305 ------LYAF----LGNDFLKRFRQCFRGE 324 (409)
T ss_pred ------HHHH----hhHHHHHHHHHHHhhh
Confidence 9999 9999999999988653
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.96 E-value=1.7e-28 Score=236.33 Aligned_cols=211 Identities=17% Similarity=0.365 Sum_probs=164.4
Q ss_pred CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc-
Q psy6269 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDK- 79 (366)
Q Consensus 1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~- 79 (366)
+|.+|+.+|++..++.....++|.+++++|++|||++|++|.+++... +++.+...++++|+++++.++|+.+.....
T Consensus 160 ~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~-~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~ 238 (417)
T PHA02638 160 QWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYR-TFNIGIILCIISWILSLIITSPAYFIFEASN 238 (417)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccee-cHhhhHhhHhHHHHHHHHHHHHHHHHhhccc
Confidence 599999999999999999999999999999999999999999876554 677778888999999999999998865321
Q ss_pred ------CCC---CCCcccccCCc----------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccc
Q psy6269 80 ------DRH---RDKRCGYNQNR----------GYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGR 140 (366)
Q Consensus 80 ------~~~---~~~~C~~~~~~----------~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~ 140 (366)
... ....|...... .+.....++++++|+++|++||.+|++++++.++
T Consensus 239 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~------------- 305 (417)
T PHA02638 239 IIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK------------- 305 (417)
T ss_pred cccccccCCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------
Confidence 111 13468543211 1222345677899999999999999998865321
Q ss_pred hhhHhHhhhhcccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHH
Q psy6269 141 HELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVG 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~ 220 (366)
++++|.+|+++++++
T Consensus 306 -----------------------------------------------------------------~~k~k~~rli~~ivi 320 (417)
T PHA02638 306 -----------------------------------------------------------------SKKTKSIIIVSIIII 320 (417)
T ss_pred -----------------------------------------------------------------cccchhhhhHHHHHH
Confidence 235677899999999
Q ss_pred HHHHhchhHHHHHHHhhhCCC-----------CCC--ChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhH
Q psy6269 221 GFIACWLPFFIVYLANPFLPA-----------GTI--SPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCF 287 (366)
Q Consensus 221 ~f~vcwlP~~i~~~~~~~~~~-----------~~~--~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~ 287 (366)
+|++||+|+.+..++..+... +.. ......+...++++|||+||+
T Consensus 321 ~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPi---------------------- 378 (417)
T PHA02638 321 CSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPL---------------------- 378 (417)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHH----------------------
Confidence 999999999999888755311 001 123345677899999999999
Q ss_pred HHHHHHHHHHhhhhccceEEEeeccccchhHHHHHHHHhhhhccccc
Q psy6269 288 VMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSR 334 (366)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~~~~~~~~~~~ 334 (366)
+|++ .+++||+++++++++...+-+
T Consensus 379 ------------------IY~f----~~~~FR~~l~~~~~~~~~~~~ 403 (417)
T PHA02638 379 ------------------IYTL----IGENFRMHLLMIFRNIFTNAK 403 (417)
T ss_pred ------------------HHHH----hCHHHHHHHHHHHHHhccccc
Confidence 9999 999999999999866554433
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.95 E-value=5.6e-27 Score=220.88 Aligned_cols=209 Identities=19% Similarity=0.336 Sum_probs=165.0
Q ss_pred CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD 80 (366)
Q Consensus 1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~ 80 (366)
+|.+|+..|++..++......+|.+++++||+|||++|++|++|+... +.+++..+++++|+++++.++|++..+....
T Consensus 103 ~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~-~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~ 181 (335)
T PHA03087 103 QWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKIN-TVKYGYIVSLVIWIISIIETTPILFVYTTKK 181 (335)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-chhhhHHHHHHHHHHHHHHhccHhheeeeec
Confidence 589999999999999999999999999999999999999999987776 7788888999999999999999888775544
Q ss_pred CCCCCcccccCC-c--ch----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhccc
Q psy6269 81 RHRDKRCGYNQN-R--GY----VVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFN 153 (366)
Q Consensus 81 ~~~~~~C~~~~~-~--~~----~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (366)
..+...|...+. . .+ .....++.+++|.++++++|.+|.++++++++
T Consensus 182 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~-------------------------- 235 (335)
T PHA03087 182 DHETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK-------------------------- 235 (335)
T ss_pred cCCCceEEecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------------------
Confidence 445566754332 1 11 12234567899999999999999988876421
Q ss_pred ccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHH
Q psy6269 154 YCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVY 233 (366)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~ 233 (366)
.++++|++|++++++++|++||+|+.+..
T Consensus 236 ---------------------------------------------------~~~~~k~~k~l~~iv~~f~i~w~P~~i~~ 264 (335)
T PHA03087 236 ---------------------------------------------------SKKNKKAIKLVLIIVILFVIFWLPFNVSV 264 (335)
T ss_pred ---------------------------------------------------chhcchHHHhHHHHHHHHHHHHHHHHHHH
Confidence 13467889999999999999999999977
Q ss_pred HHhhhC----CCCCC----ChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccce
Q psy6269 234 LANPFL----PAGTI----SPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPF 305 (366)
Q Consensus 234 ~~~~~~----~~~~~----~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (366)
++.... ..... ......+..++..+|+++||+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPi---------------------------------------- 304 (335)
T PHA03087 265 FVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPL---------------------------------------- 304 (335)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhh----------------------------------------
Confidence 665331 11111 122345667788999999999
Q ss_pred EEEeeccccchhHHHHHHHHhhhhcc
Q psy6269 306 AVALHITVPRSDFRLAFWRLTLKHCN 331 (366)
Q Consensus 306 iy~~~~~~~~~~fR~~~~~~~~~~~~ 331 (366)
+|++ ++++||++++++++...+
T Consensus 305 IY~~----~~~~fr~~~~~~~~~~~~ 326 (335)
T PHA03087 305 IYAF----VSEFFNKHKKKSLKLMFT 326 (335)
T ss_pred HHHH----cCHHHHHHHHHHHHHHhh
Confidence 9999 999999999999854433
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.94 E-value=3.6e-26 Score=205.18 Aligned_cols=200 Identities=31% Similarity=0.554 Sum_probs=169.2
Q ss_pred CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD 80 (366)
Q Consensus 1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~ 80 (366)
+|.+|+..|++..++...+..+|.++++++++|||++|++|++|++.. +++++..+++++|++++++++|+.++.....
T Consensus 49 ~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~-~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~ 127 (257)
T PF00001_consen 49 DWIFSSFLCRIFGFLFYFSSFSSIFSLVAISIDRYLAICHPLRYRRIR-TRRRARIIIILIWIISFLISLPPLFFSWVYF 127 (257)
T ss_dssp SCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 599999999999999999999999999999999999999999998887 7888999999999999999999988753322
Q ss_pred C-C-CCCcccccCCc----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcccc
Q psy6269 81 R-H-RDKRCGYNQNR----GYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNY 154 (366)
Q Consensus 81 ~-~-~~~~C~~~~~~----~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (366)
. . ....|..+... .+.....++.+++|+++++++|.+|++.+++++++..+...
T Consensus 128 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~-------------------- 187 (257)
T PF00001_consen 128 VSDGSQSFCFIDFSSSSSQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSS-------------------- 187 (257)
T ss_dssp ESTCCCEEEEESCSSSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTS--------------------
T ss_pred ccccccccccccccccccccccccccccccccceeeeeeecccccccccccccccccccc--------------------
Confidence 2 2 25789766544 36777888889999999999999999999998776443221
Q ss_pred cceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHH
Q psy6269 155 CKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYL 234 (366)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~ 234 (366)
.+.+.+.++|+|.++++++++++|++||+|+.+..+
T Consensus 188 --------------------------------------------~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~ 223 (257)
T PF00001_consen 188 --------------------------------------------SSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSL 223 (257)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------cccccccccccccccccccccccccccCCceeHHHH
Confidence 123355688999999999999999999999999999
Q ss_pred HhhhCCCCC-CChHHHHHHHHHHHHhhhhccc
Q psy6269 235 ANPFLPAGT-ISPLLSNSLTWLGKLSGSLRLF 265 (366)
Q Consensus 235 ~~~~~~~~~-~~~~~~~~~~~l~~~ns~vNP~ 265 (366)
+....+..+ .......+..++.++|+++||+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~ 255 (257)
T PF00001_consen 224 LSVFSPSSSLISSILFYISYFLAFLNSCLNPI 255 (257)
T ss_dssp HHHHSSTSTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCccchhhHHHHHHHHHHHHHHHhhCcE
Confidence 988876543 4567788889999999999999
No 9
>KOG2087|consensus
Probab=99.72 E-value=1.2e-18 Score=157.79 Aligned_cols=205 Identities=19% Similarity=0.330 Sum_probs=158.3
Q ss_pred ccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCC
Q psy6269 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDR 81 (366)
Q Consensus 2 W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~ 81 (366)
|.-| ..|++.+|+..+++-+|+++++++++||++.|++|++-.+.. ..+.+.++++..|+.+++.++.|+++... +
T Consensus 98 W~tg-~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~-~lr~~~~ill~~wl~~~l~A~~Pl~g~s~--Y 173 (363)
T KOG2087|consen 98 WQTG-LGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKA-KLRPLVLILLLGWLFAFLMALLPLFGISS--Y 173 (363)
T ss_pred hhhc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcc-cccHHHHHHHHHHHHHHHHHhccccCCCC--C
Confidence 4444 789999999999999999999999999999999999866654 66668899999999999999999998322 2
Q ss_pred CCCCcccccC----Ccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcccccc
Q psy6269 82 HRDKRCGYNQ----NRG-YVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCK 156 (366)
Q Consensus 82 ~~~~~C~~~~----~~~-~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (366)
.....|.+-+ ... |.....+....+.+++|.++|++++..+++.....
T Consensus 174 ~~~~vClPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~--------------------------- 226 (363)
T KOG2087|consen 174 GASSVCLPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSA--------------------------- 226 (363)
T ss_pred cccceeeecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcc---------------------------
Confidence 2457785321 111 56667777788999999999999998876532210
Q ss_pred eeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHHHh
Q psy6269 157 VIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLAN 236 (366)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~~~ 236 (366)
.....+.+|-+..+++.-.+||.|..++.+..
T Consensus 227 ------------------------------------------------~~~~~~~akr~a~LvfTd~icw~Pi~f~~~~a 258 (363)
T KOG2087|consen 227 ------------------------------------------------TLISTSVAKRMAFLVFTDCICWCPIAFFKFSA 258 (363)
T ss_pred ------------------------------------------------ccchhhhhhCeeEEEEccccccCchheeeeHH
Confidence 01114677778888999999999999998887
Q ss_pred hhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccch
Q psy6269 237 PFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRS 316 (366)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~ 316 (366)
.+..+-........+..++.-+|||+||+ +|++ .++
T Consensus 259 l~~~~li~~~~sk~llv~flPlns~~NP~----------------------------------------LYa~----fT~ 294 (363)
T KOG2087|consen 259 LIGVELISVSYSKWLLVFFLPLNSCLNPF----------------------------------------LYAF----FTP 294 (363)
T ss_pred hcCCcccChhhceeEEEEEEEcccccCch----------------------------------------hHHH----cCH
Confidence 76543222223333445567899999999 9999 999
Q ss_pred hHHHHHHHHhhhh
Q psy6269 317 DFRLAFWRLTLKH 329 (366)
Q Consensus 317 ~fR~~~~~~~~~~ 329 (366)
.||+.++.+..+.
T Consensus 295 ~fk~d~~~l~~k~ 307 (363)
T KOG2087|consen 295 VFKEDLFLLLSKV 307 (363)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998665
No 10
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.52 E-value=1.5e-13 Score=128.68 Aligned_cols=206 Identities=20% Similarity=0.278 Sum_probs=158.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccC-ccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCC----CC
Q psy6269 10 DIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYS-RKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRH----RD 84 (366)
Q Consensus 10 ~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~-~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~----~~ 84 (366)
.+...+...+..+|.|..++||+.|+++|.+|+..+ +.+.+.+.+..++.++++++.+..++..+........ ..
T Consensus 79 ~~~~~l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~ 158 (318)
T PF10324_consen 79 LIMESLSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPP 158 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCC
Confidence 456678888999999999999999999999999754 2455677788888899999999999988766443221 24
Q ss_pred Ccccc-c---CC-------------------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccch
Q psy6269 85 KRCGY-N---QN-------------------RGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRH 141 (366)
Q Consensus 85 ~~C~~-~---~~-------------------~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~ 141 (366)
..|.. + .. ..+.....++.-++|.++..++.+.+.+.+|+.++++++...
T Consensus 159 ~~C~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~------- 231 (318)
T PF10324_consen 159 PNCSGFPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSS------- 231 (318)
T ss_pred CceeeccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccc-------
Confidence 56851 1 00 012222344446899999999999999999988776554432
Q ss_pred hhHhHhhhhcccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHH
Q psy6269 142 ELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGG 221 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~ 221 (366)
+..+++.+.+++++++++.
T Consensus 232 -------------------------------------------------------------~~~~~~~~tt~li~~~ti~ 250 (318)
T PF10324_consen 232 -------------------------------------------------------------SKSKKSDRTTKLILFMTIS 250 (318)
T ss_pred -------------------------------------------------------------cccccccchHHHHHHHHHH
Confidence 1135788999999999999
Q ss_pred HHHhchhHHHHHHHhhhCCCCC----CChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHH
Q psy6269 222 FIACWLPFFIVYLANPFLPAGT----ISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWL 297 (366)
Q Consensus 222 f~vcwlP~~i~~~~~~~~~~~~----~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (366)
|+++-+|+.+..++..+..+.. .......+...+..+|+..|++
T Consensus 251 f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~-------------------------------- 298 (318)
T PF10324_consen 251 FLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFF-------------------------------- 298 (318)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHH--------------------------------
Confidence 9999999999999987643322 2234567778899999999999
Q ss_pred hhhhccceEEEeeccccchhHHHHHHHHhh
Q psy6269 298 VGIFVMPFAVALHITVPRSDFRLAFWRLTL 327 (366)
Q Consensus 298 ~~~~~~~~iy~~~~~~~~~~fR~~~~~~~~ 327 (366)
+|++ ++.+||+++|++++
T Consensus 299 --------ic~~----mSsqYR~t~~~~f~ 316 (318)
T PF10324_consen 299 --------ICCF----MSSQYRKTVKKLFG 316 (318)
T ss_pred --------hhhh----hhHHHHHHHHHHhc
Confidence 9999 99999999999994
No 11
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.42 E-value=6.7e-12 Score=113.64 Aligned_cols=197 Identities=20% Similarity=0.260 Sum_probs=135.4
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCCC
Q psy6269 6 WILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK 85 (366)
Q Consensus 6 ~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~~ 85 (366)
...|-...+...++.......+.+|++||++||+.|++|+... +.+..........+.+.... ..++...+++...
T Consensus 58 ~~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~iaV~~P~~Y~~~~-~~~y~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~ 133 (257)
T PF10320_consen 58 RSECFWQIFFYIFFQCAQSVIMLAIAIDRLIAVCFPLRYRTIS-TRKYLIILLIFPVIYSIFFT---VIGFLYRDDETIV 133 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEeehhhhhhcc-cccchhhHhHHHHHHHHHHH---hheeEecCCcccc
Confidence 4578888899999999999999999999999999999998876 44433333333333333332 2333333444577
Q ss_pred cccccCCcc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcccccceeeeccc
Q psy6269 86 RCGYNQNRG--YVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKT 163 (366)
Q Consensus 86 ~C~~~~~~~--~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (366)
.|.+..... ..........++ .+++++.|...+..++++.++
T Consensus 134 ~C~pp~a~~~~~~~~~~~~~~~i-nv~tvivY~i~~~~~~~k~~~----------------------------------- 177 (257)
T PF10320_consen 134 ICNPPLAFHGTASQIWSYSNIII-NVITVIVYIITIIIFKRKSRS----------------------------------- 177 (257)
T ss_pred cCCCccccCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccc-----------------------------------
Confidence 897654222 222222222223 344567777777777665432
Q ss_pred cccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHHHhhhCCCC-
Q psy6269 164 HLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAG- 242 (366)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~~~~~~~~~- 242 (366)
..+.++|..|.+.+.++.|+++|.=..+...+....+.+
T Consensus 178 ----------------------------------------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~ 217 (257)
T PF10320_consen 178 ----------------------------------------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDG 217 (257)
T ss_pred ----------------------------------------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcH
Confidence 125688999999999999999999777776665544332
Q ss_pred CCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHHH
Q psy6269 243 TISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAF 322 (366)
Q Consensus 243 ~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~ 322 (366)
...........++..++.+.|.+ +|.+ .++|+|+++
T Consensus 218 ~~~~~i~~~~~i~v~~~~s~~ff----------------------------------------V~~~----~S~EYR~af 253 (257)
T PF10320_consen 218 ETIAIIQMYAGIFVNISYSQNFF----------------------------------------VYYW----RSSEYRKAF 253 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhe----------------------------------------EEEE----cCHHHHHHH
Confidence 22233556667889999999999 9999 999999999
Q ss_pred HHHh
Q psy6269 323 WRLT 326 (366)
Q Consensus 323 ~~~~ 326 (366)
++++
T Consensus 254 ~~~~ 257 (257)
T PF10320_consen 254 RELF 257 (257)
T ss_pred HHhC
Confidence 9874
No 12
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.31 E-value=2.6e-11 Score=111.25 Aligned_cols=206 Identities=14% Similarity=0.144 Sum_probs=135.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccC-ccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCCC-
Q psy6269 8 LCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPL-TYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK- 85 (366)
Q Consensus 8 ~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl-~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~~- 85 (366)
.-++.....+....+-....+++|++||.+|++|. ++.+.. ++.+...+++.-|+.++++++|.........+..+.
T Consensus 74 ~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~-~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~~ 152 (283)
T PF10323_consen 74 YAAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPTSRHTKFW-QPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEENM 152 (283)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhheEEeecHHHhhhc-cccchhheeeeeehhhhhheeeeeccCceeeecccce
Confidence 34556666677778888899999999999999999 655555 777788899999999999999965543222111111
Q ss_pred cccccCCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcccccceeeecccc
Q psy6269 86 RCGYNQNR-GYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTH 164 (366)
Q Consensus 86 ~C~~~~~~-~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (366)
.-..+... ............+-++..+++|+.++..+||+.+...+
T Consensus 153 ~~~~d~~~~~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k~~s~--------------------------------- 199 (283)
T PF10323_consen 153 SLFVDPEFIQRNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNKKKSK--------------------------------- 199 (283)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH---------------------------------
Confidence 11111110 11222334445566778899999999999987641111
Q ss_pred ccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHHHhhhCCCCCC
Q psy6269 165 LVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTI 244 (366)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~~~~~~~~~~~ 244 (366)
..++..++|.+.+.+.++.++++++.-.=+...... ....+.+.
T Consensus 200 -----------------------------------~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~~~~~~-~~~~~~~~ 243 (283)
T PF10323_consen 200 -----------------------------------SSSRSRRREIRLAIQVFILFCAFFVILVYYIFSNYF-AQNFNTDP 243 (283)
T ss_pred -----------------------------------hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchH
Confidence 122456889999999988887766654444333332 22211111
Q ss_pred ChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHHHHH
Q psy6269 245 SPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWR 324 (366)
Q Consensus 245 ~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~ 324 (366)
......+-..+.-+.|.+||+ .-.+ .|+++|+++++
T Consensus 244 ~~~~r~~y~~~~~~~s~inP~----------------------------------------~LLi----~n~~lr~~~~~ 279 (283)
T PF10323_consen 244 IFYLRAFYPILNGLLSFINPW----------------------------------------MLLI----FNKDLRKQVRR 279 (283)
T ss_pred HHHHHHHHHHHHHHHHhhhhH----------------------------------------Hhhh----ccHHHHHHHHH
Confidence 112223556778888999999 8888 99999999999
Q ss_pred Hhh
Q psy6269 325 LTL 327 (366)
Q Consensus 325 ~~~ 327 (366)
.++
T Consensus 280 ~~~ 282 (283)
T PF10323_consen 280 MLK 282 (283)
T ss_pred HcC
Confidence 874
No 13
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.14 E-value=3.1e-09 Score=97.31 Aligned_cols=194 Identities=14% Similarity=0.133 Sum_probs=134.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhc--cccCCC-------
Q psy6269 12 WVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGW--YDKDRH------- 82 (366)
Q Consensus 12 ~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~--~~~~~~------- 82 (366)
.+.....+...+.++..+||++|++||..|.+|++.. +.+.+..+++++|++++....++.... ....++
T Consensus 70 ~g~~~~~~y~~~~~~~~liaiNRf~ai~fP~~y~~~f-s~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~ 148 (274)
T PF10328_consen 70 FGFIGMFCYFIGPLSHLLIAINRFCAIFFPFKYKKIF-SFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSY 148 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheeeeHHHHHhHc-CccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeec
Confidence 3777788888999999999999999999999998887 888899999999999997766555421 111111
Q ss_pred -CCCcccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcccccceeeec
Q psy6269 83 -RDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIK 161 (366)
Q Consensus 83 -~~~~C~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (366)
.++.|+.. ...........-.+++.++++.++.++++.+++.. ..
T Consensus 149 ~~~~~C~~~-----~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~-~~---------------------------- 194 (274)
T PF10328_consen 149 PTDPPCGNY-----SWYFDFYKNFILVIISNILNIITFIKLRKFRKKIS-VS---------------------------- 194 (274)
T ss_pred CCCCccchh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cc----------------------------
Confidence 12234322 11122222333366677788888888888776541 10
Q ss_pred cccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHHHhhhCCC
Q psy6269 162 KTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPA 241 (366)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~~~~~~~~ 241 (366)
....+++.++|.+..+....-...|++.++=+.+...+. ++
T Consensus 195 ------------------------------------~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~---~~ 235 (274)
T PF10328_consen 195 ------------------------------------SSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLS---SN 235 (274)
T ss_pred ------------------------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cc
Confidence 012235668899999999999999999888777764441 11
Q ss_pred CCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHH
Q psy6269 242 GTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLA 321 (366)
Q Consensus 242 ~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~ 321 (366)
....+....+...+..+.|++ ++.. .|+++|+.
T Consensus 236 ---~~~~F~~~t~~w~~~h~~DG~----------------------------------------i~l~----fN~~~r~~ 268 (274)
T PF10328_consen 236 ---RWWQFFCTTFSWVLVHALDGL----------------------------------------IMLI----FNSEIRRK 268 (274)
T ss_pred ---cHHHHHHHHHHHHHHHHhcce----------------------------------------eEeE----EcHHHHHH
Confidence 233334444445666778999 9999 99999999
Q ss_pred HHHHh
Q psy6269 322 FWRLT 326 (366)
Q Consensus 322 ~~~~~ 326 (366)
+++..
T Consensus 269 ~~~~~ 273 (274)
T PF10328_consen 269 IRKKK 273 (274)
T ss_pred HHhcc
Confidence 98754
No 14
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.84 E-value=2.5e-07 Score=85.73 Aligned_cols=211 Identities=11% Similarity=0.069 Sum_probs=135.2
Q ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCcc-Cccccc--hhhHHHHHHHHHHHHHHHhhhhhhhccccCC
Q psy6269 5 GWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTY-SRKTRS--KKLALYMILCVWVLALVITCPPILGWYDKDR 81 (366)
Q Consensus 5 g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y-~~~~~t--~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~ 81 (366)
.+..++...++..+....|.|..+++++--++.|+..-+. --+.+. .+....++.++++++++..++....+.....
T Consensus 78 ~~~~~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~ 157 (303)
T PF05296_consen 78 SENVYKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHIN 157 (303)
T ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeec
Confidence 4557888888889999999999999999999999975431 112101 1122334566777777333333333321111
Q ss_pred ----CCCCccc--ccCCcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcc
Q psy6269 82 ----HRDKRCG--YNQNRG---YVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRF 152 (366)
Q Consensus 82 ----~~~~~C~--~~~~~~---~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (366)
.....+. ...... +......+..++|+++++++...+...++||.+++++.......
T Consensus 158 ~~~~~~~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~-------------- 223 (303)
T PF05296_consen 158 NNNTNNSRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRD-------------- 223 (303)
T ss_pred cccccCCCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC--------------
Confidence 1111111 111111 22333457889999999999999999999999988765442221
Q ss_pred cccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHH
Q psy6269 153 NYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIV 232 (366)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~ 232 (366)
.+.+.+.|++|+++...+.|+++++-..+.
T Consensus 224 --------------------------------------------------ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~ 253 (303)
T PF05296_consen 224 --------------------------------------------------PSTEAHIRAIKTMISFLILYIIYFLSLILS 253 (303)
T ss_pred --------------------------------------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234789999999988777777766554432
Q ss_pred HHHhhhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeecc
Q psy6269 233 YLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312 (366)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~ 312 (366)
..-.... .......+...+..+.+...|+ +-.+
T Consensus 254 ~~~~~~~----~~~~~~~~~~~i~~~yps~hs~----------------------------------------iLIl--- 286 (303)
T PF05296_consen 254 FLSFFFP----ENSIWFWVCEIIIALYPSGHSI----------------------------------------ILIL--- 286 (303)
T ss_pred HHHHHhc----cccHHHHHHHHHHHHHHHHHHH----------------------------------------HHhc---
Confidence 2222121 2344556666777788888888 7777
Q ss_pred ccchhHHHHHHHHhh
Q psy6269 313 VPRSDFRLAFWRLTL 327 (366)
Q Consensus 313 ~~~~~fR~~~~~~~~ 327 (366)
-|+++|++++++++
T Consensus 287 -gn~KLr~~~~~il~ 300 (303)
T PF05296_consen 287 -GNPKLRQALLKILW 300 (303)
T ss_pred -CchHHHHHHHHHHh
Confidence 99999999999983
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.63 E-value=3.9e-06 Score=77.32 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=59.8
Q ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCC
Q psy6269 5 GWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRD 84 (366)
Q Consensus 5 g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~ 84 (366)
++..|++++++.+++..++.+=.++||++=|+.+++.... .++.-..-.+.+|.++++.++.++..- ..++..
T Consensus 71 ~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~~~~~-----~~k~e~~Y~l~~wGiPli~a~i~l~~~--~~g~~G 143 (303)
T PF05462_consen 71 NSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVKRYDE-----LEKLEKYYHLVCWGIPLIPAVIPLIGN--DYGPAG 143 (303)
T ss_pred CCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEEcCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHcc--CCCCCC
Confidence 4578999999999999999999999999999999876432 233344577889999999888766532 233334
Q ss_pred CcccccC
Q psy6269 85 KRCGYNQ 91 (366)
Q Consensus 85 ~~C~~~~ 91 (366)
..|....
T Consensus 144 ~WCWI~~ 150 (303)
T PF05462_consen 144 NWCWIKP 150 (303)
T ss_pred CceeecC
Confidence 5786544
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.45 E-value=3.9e-06 Score=77.70 Aligned_cols=201 Identities=9% Similarity=0.036 Sum_probs=124.9
Q ss_pred cccchhHH------hHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHH--HHHHHHHHHHHhhhhhhhc
Q psy6269 5 GWILCDIW------VSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYM--ILCVWVLALVITCPPILGW 76 (366)
Q Consensus 5 g~~~C~~~------~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~--i~~~Wi~s~l~~~p~~~~~ 76 (366)
|...|..- +.+...+-.++......+++||..-+..|.+....+ .+++...+ +..+|.+-..+.-+|.+.-
T Consensus 96 G~vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F-~g~~~~~~l~~~~iY~~y~~~fT~pv~Fn 174 (313)
T PF10321_consen 96 GAVFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLF-EGKRTYIVLFLPIIYGFYFSFFTPPVLFN 174 (313)
T ss_pred CccccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhh-cCceEEeeehhHHHHHHHHHHHcCcccCC
Confidence 55566543 334455567788889999999999999987654444 33333333 3334433333333444321
Q ss_pred cccCC--CCCCcccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcccc
Q psy6269 77 YDKDR--HRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNY 154 (366)
Q Consensus 77 ~~~~~--~~~~~C~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (366)
..... .|+..=.....+.|.-..-.+.-++-.+++.++|+.+...++++.+...+
T Consensus 175 s~~~sw~fDP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~s----------------------- 231 (313)
T PF10321_consen 175 SEYMSWFFDPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYSTS----------------------- 231 (313)
T ss_pred CCcceEecCccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----------------------
Confidence 10000 00100011123334444444444555777888999999888887554311
Q ss_pred cceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHH
Q psy6269 155 CKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYL 234 (366)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~ 234 (366)
....+.+++......++.+...+.++=|.....
T Consensus 232 -----------------------------------------------~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f 264 (313)
T PF10321_consen 232 -----------------------------------------------SQLSKAQRQIFIQSVIICFFHAIAAVIYVYMQF 264 (313)
T ss_pred -----------------------------------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHeeee
Confidence 133466777777777777777776555544333
Q ss_pred HhhhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeecccc
Q psy6269 235 ANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVP 314 (366)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~ 314 (366)
+ ..+++...+.+..--+++..+|+ +|.. .
T Consensus 265 ~-------~~p~~~i~~~~~~Wql~~g~~~i----------------------------------------IYl~----l 293 (313)
T PF10321_consen 265 F-------PPPPWLIIIGQISWQLSHGCPPI----------------------------------------IYLT----L 293 (313)
T ss_pred e-------cccHHHHHHHHHHHhccCCccce----------------------------------------EEEE----E
Confidence 2 23678888889999999999999 9999 9
Q ss_pred chhHHHHHHHHhh
Q psy6269 315 RSDFRLAFWRLTL 327 (366)
Q Consensus 315 ~~~fR~~~~~~~~ 327 (366)
|+..|++++|+++
T Consensus 294 NrtIR~~~~k~~~ 306 (313)
T PF10321_consen 294 NRTIRNSVLKMLG 306 (313)
T ss_pred CHHHHHHHHHHHc
Confidence 9999999999983
No 17
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.19 E-value=1.7e-06 Score=77.71 Aligned_cols=196 Identities=16% Similarity=0.184 Sum_probs=125.1
Q ss_pred cccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CccCccccchhhHHHHHHHHHHHHHHHhhhhhhhc----
Q psy6269 3 EFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQP--LTYSRKTRSKKLALYMILCVWVLALVITCPPILGW---- 76 (366)
Q Consensus 3 ~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~P--l~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~---- 76 (366)
.++|..||+..|++-++-+.|+.+.+++++-.-+.|.-. .+..-+....+.....+...|++-+++.....+..
T Consensus 42 ~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~ 121 (265)
T PF03402_consen 42 FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATP 121 (265)
T ss_pred cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecC
Confidence 368999999999999999999999999999777766532 11111112334456667778998888765433321
Q ss_pred cccCCC---CCCcccccCCcchh--hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhh
Q psy6269 77 YDKDRH---RDKRCGYNQNRGYV--VF--SGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLR 149 (366)
Q Consensus 77 ~~~~~~---~~~~C~~~~~~~~~--~~--~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (366)
+..... ..+.|......... .+ ...+.=++.+.+|+...+.+.-.+.||++|.+..+...
T Consensus 122 n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~------------- 188 (265)
T PF03402_consen 122 NSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVLFVGLMIWASGYMVFLLYRHHQQVQHIHSSS------------- 188 (265)
T ss_pred ccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHHHHHHHHhhhhhheeeeeecccccccCcCCC-------------
Confidence 111111 23457543322221 11 11122244466777777777778888877665543321
Q ss_pred hcccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhH
Q psy6269 150 VRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPF 229 (366)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~ 229 (366)
...+...|.|+++++++.+..|++.+.--
T Consensus 189 ---------------------------------------------------~s~r~SpE~RAtktILlLVs~FV~fY~l~ 217 (265)
T PF03402_consen 189 ---------------------------------------------------LSPRSSPETRATKTILLLVSTFVSFYGLS 217 (265)
T ss_pred ---------------------------------------------------CCCCCChhHHHhCeEeeHHHHHHHHHhHH
Confidence 12233679999999999999999999998
Q ss_pred HHHHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccc
Q psy6269 230 FIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLF 265 (366)
Q Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~ 265 (366)
.++........+ ..++.....++...-+.+-|+
T Consensus 218 si~~~~~~~~~~---~~~~~~~~~~ls~cfptisPf 250 (265)
T PF03402_consen 218 SILFIYLTSFKN---SPWLLNISVFLSSCFPTISPF 250 (265)
T ss_pred HHHHHHHHHhcC---CcceeEHHHHHhHHhHhhChH
Confidence 887665444332 233445566777777888999
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=98.16 E-value=0.00036 Score=64.47 Aligned_cols=183 Identities=14% Similarity=0.211 Sum_probs=112.4
Q ss_pred ccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCC--
Q psy6269 4 FGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDR-- 81 (366)
Q Consensus 4 ~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~-- 81 (366)
+|+..|.....+...+...+.+.+.+--..||..+.++.. ++++....+++.++.++...+..++...+...
T Consensus 77 ~~~~~C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~------~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~ 150 (292)
T PF10317_consen 77 FGPWFCFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP------SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVE 150 (292)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHH
Confidence 5778999999999999999999999999999999998753 45556667777777777776655543311100
Q ss_pred ------CCCCcc---cc---cCCcchhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHh
Q psy6269 82 ------HRDKRC---GY---NQNRGYVVFSGMGSFFIP----LLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAK 145 (366)
Q Consensus 82 ------~~~~~C---~~---~~~~~~~~~~~~~~~~lP----~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~ 145 (366)
..+..- .. .+..........+...++ .+++.++--+|.+.++++..+..
T Consensus 151 ~~~~~~~p~y~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~~~S--------------- 215 (292)
T PF10317_consen 151 AELNQFHPEYNLENYSISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKKSSSMS--------------- 215 (292)
T ss_pred HHHHHhCcccccccceeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcC---------------
Confidence 001111 11 111111111111111111 22223333334444433222211
Q ss_pred HhhhhcccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHh
Q psy6269 146 IKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIAC 225 (366)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vc 225 (366)
.+..+..++.+|.+.+=+..=+++
T Consensus 216 --------------------------------------------------------~~tk~~h~~lv~~Lt~Q~~lP~~~ 239 (292)
T PF10317_consen 216 --------------------------------------------------------ERTKSMHRQLVKGLTIQALLPLFF 239 (292)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 123467888899999999999999
Q ss_pred chhHHHHHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccc
Q psy6269 226 WLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLF 265 (366)
Q Consensus 226 wlP~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~ 265 (366)
..|-....++....+ ........+...+..+.+.+||+
T Consensus 240 ~~p~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~P~ 277 (292)
T PF10317_consen 240 YIPGVIIYFLSQFTG--YEHPFLEYLIFMLASLPPLIDPL 277 (292)
T ss_pred HHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHhchH
Confidence 998888777765533 23566667777788999999999
No 19
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.11 E-value=0.00018 Score=66.64 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=106.7
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCc
Q psy6269 7 ILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDKR 86 (366)
Q Consensus 7 ~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~~~ 86 (366)
.+|........+++.++.+=+.+.|+|=|+.+.+-- .+.....--..+|.++.++..--...... ++...
T Consensus 114 afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~a-------g~~~~~lYH~~aWgl~~lL~~~Gl~~Ly~---Ps~~~ 183 (405)
T PF02101_consen 114 AFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSA-------GRSTIWLYHMMAWGLPALLCAEGLAMLYY---PSISR 183 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccC-------CCcchhHHHHHHHHHHHHHHHhccceeec---CCHHh
Confidence 689998888889999999999999999999885532 12223355677899888877654443322 23345
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcccccceeeecccccc
Q psy6269 87 CGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLV 166 (366)
Q Consensus 87 C~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (366)
|........ ---+...+|++++++.+=.++++.-+.....-+.....
T Consensus 184 Ce~~l~~al---phYvttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~------------------------------ 230 (405)
T PF02101_consen 184 CESGLEHAL---PHYVTTYIPLLLVLVANPILYIKAVRAVASLLKGRQGI------------------------------ 230 (405)
T ss_pred hhhhhhhcc---hhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccc------------------------------
Confidence 764433321 12223346666666555444443322222211111100
Q ss_pred CCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHHHhhhC---CCC-
Q psy6269 167 LPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFL---PAG- 242 (366)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~~~~~~---~~~- 242 (366)
-..++++....+-+-.+.+.++|.+||+|..|.-++.... .+-
T Consensus 231 ---------------------------------yT~~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL~~l~~~~~i~ 277 (405)
T PF02101_consen 231 ---------------------------------YTENERRLGAQIKIKFFKIMLVFYICWLPNIINGSLLFYLEMQPDIN 277 (405)
T ss_pred ---------------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHhhcccccc
Confidence 1112334555666677889999999999999977654321 110
Q ss_pred -CCChHHHHHHHHHHHHhhhhccc
Q psy6269 243 -TISPLLSNSLTWLGKLSGSLRLF 265 (366)
Q Consensus 243 -~~~~~~~~~~~~l~~~ns~vNP~ 265 (366)
............+-++-.++||.
T Consensus 278 ~~sl~~~~~a~~t~W~IMaIlNPl 301 (405)
T PF02101_consen 278 GGSLKQVRNAALTTWFIMAILNPL 301 (405)
T ss_pred cccccchhhHHHHHHHHHHHHhHH
Confidence 11123334455556666777887
No 20
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=98.09 E-value=5e-05 Score=69.42 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=68.1
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCC-CCCC
Q psy6269 7 ILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDR-HRDK 85 (366)
Q Consensus 7 ~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~-~~~~ 85 (366)
...++..++......+-....+.|++||+-+|..|.++.+.. ++. ...+++++.++++....+.+........ ++..
T Consensus 79 ~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W-~~~-~~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~ 156 (275)
T PF02118_consen 79 FFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFW-KRY-YWIIIIIIFLLPFSFTWNIFISPTYVVYDNGGF 156 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH-Hhh-hhhheeeeeehhHHHHHHHHccccEEEEECCce
Confidence 456677778888889999999999999999999999988776 443 3345555555555443333332211111 1111
Q ss_pred cccc--cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6269 86 RCGY--NQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRH 126 (366)
Q Consensus 86 ~C~~--~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~ 126 (366)
.-.. ..............+++-.++.++++....+++++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~ 199 (275)
T PF02118_consen 157 SYSYNDTVSWASLSIFSLIYFIIIIIITIITNIITYRRLRKLS 199 (275)
T ss_pred EEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111 1111111222333344445556677777777777654
No 21
>KOG4219|consensus
Probab=97.83 E-value=1.2e-05 Score=74.80 Aligned_cols=44 Identities=41% Similarity=0.688 Sum_probs=39.3
Q ss_pred hccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccce
Q psy6269 262 LRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPF 305 (366)
Q Consensus 262 vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (366)
+=-+||++++..++-+|++||.||+||.|||+||+..+++-.|+
T Consensus 48 vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f 91 (423)
T KOG4219|consen 48 VAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVF 91 (423)
T ss_pred HHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHH
Confidence 33569999999999999999999999999999999999866554
No 22
>KOG4193|consensus
Probab=97.82 E-value=0.00038 Score=69.95 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=72.8
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC--CCCCC
Q psy6269 8 LCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD--RHRDK 85 (366)
Q Consensus 8 ~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~--~~~~~ 85 (366)
.|+..+++..++..+..+=+.++++.=|..++.-.. .. ..++........|...+++...........+ .....
T Consensus 385 ~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf~---~~-~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~ 460 (610)
T KOG4193|consen 385 LCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVFR---SR-PRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPR 460 (610)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cc-cchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCC
Confidence 699999999999999999999999999996666443 22 3343444446899988887766555443221 22344
Q ss_pred cccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6269 86 RCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIA 123 (366)
Q Consensus 86 ~C~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr 123 (366)
.|..+......+. |+.|+.+++.+++.++...-
T Consensus 461 ~CWl~~~~~~~~~-----F~GPv~~ii~~Ni~~Fv~t~ 493 (610)
T KOG4193|consen 461 VCWLDTQNGFIWS-----FLGPVTLIILVNIVMFVVTL 493 (610)
T ss_pred ceEEecCCceEEE-----EehHHHHHHHHHHHHHHHHH
Confidence 5876655554443 77888888777766655433
No 23
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=97.75 E-value=0.0033 Score=58.38 Aligned_cols=179 Identities=11% Similarity=0.112 Sum_probs=111.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCC------CCCC
Q psy6269 12 WVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDR------HRDK 85 (366)
Q Consensus 12 ~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~------~~~~ 85 (366)
...+.......-.-.++.-=+-|+.+|.+..+.+. . ++..-........+..++..+......-..++ .+..
T Consensus 93 ~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~-l-~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~nyP 170 (303)
T PF10327_consen 93 LMTIWIFLFIFQIESLVICFLRKHQAIARILSKHV-L-PKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRENYP 170 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-C-cHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC
Confidence 33334444444455566667889999999986433 2 56555555555555555544433332211110 1233
Q ss_pred ccccc-----------CCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcc
Q psy6269 86 RCGYN-----------QNRGY--VVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRF 152 (366)
Q Consensus 86 ~C~~~-----------~~~~~--~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (366)
.|... .+.++ .....+++.++-..++.+++..+++.+++.+++..+.
T Consensus 171 ~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~~-------------------- 230 (303)
T PF10327_consen 171 EYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISKQ-------------------- 230 (303)
T ss_pred chhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--------------------
Confidence 44221 12222 2234444456667778889999998888887766554
Q ss_pred cccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHH
Q psy6269 153 NYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIV 232 (366)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~ 232 (366)
..++++++.+.+++=.++-.+|-+|..+.
T Consensus 231 ---------------------------------------------------ty~kHk~av~SLi~Q~~~~~i~~~P~~~~ 259 (303)
T PF10327_consen 231 ---------------------------------------------------TYQKHKEAVRSLIAQFATSSICILPPFIF 259 (303)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44889999999998888888888999888
Q ss_pred HHHhhhCCCCCCChHHHHHHHHHHHHhhhhccc
Q psy6269 233 YLANPFLPAGTISPLLSNSLTWLGKLSGSLRLF 265 (366)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~ 265 (366)
....... ........+........+|.+|-+
T Consensus 260 ~~~~~~~--~~~~q~i~~~~~~~f~~HS~~n~i 290 (303)
T PF10327_consen 260 VVVVIFE--FEDAQVISEICLAIFSSHSSVNMI 290 (303)
T ss_pred hhhheec--CCCcHHHHHHHHHHHHHhhHhhhe
Confidence 7765442 223455667777888899999999
No 24
>KOG4220|consensus
Probab=97.74 E-value=4.7e-06 Score=77.47 Aligned_cols=48 Identities=40% Similarity=0.632 Sum_probs=43.8
Q ss_pred HhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccce
Q psy6269 258 LSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPF 305 (366)
Q Consensus 258 ~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (366)
.-|.+.-+||+++++.+--+|+|+|+.||||+||||||+..+.+.+|+
T Consensus 39 ~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl 86 (503)
T KOG4220|consen 39 SLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNL 86 (503)
T ss_pred HHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechH
Confidence 335666789999999999999999999999999999999999999995
No 25
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=97.70 E-value=0.0044 Score=58.09 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=47.3
Q ss_pred ccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHH
Q psy6269 4 FGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVI 68 (366)
Q Consensus 4 ~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~ 68 (366)
.+...|-+.-....++...+..+..++.+||++|-.+.-+|.+. ++.....+..+.|++++..
T Consensus 91 ~~~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~--~~~~Gi~l~~~qi~is~~~ 153 (324)
T PF10292_consen 91 PSTYRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS--GKWLGILLAFFQILISLLI 153 (324)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC--CccHHHHHHHHHHHHHHHH
Confidence 45567888888899999999999999999999999999888654 3443344444555555554
No 26
>PHA03234 DNA packaging protein UL33; Provisional
Probab=97.69 E-value=2.3e-05 Score=73.89 Aligned_cols=69 Identities=14% Similarity=0.208 Sum_probs=47.5
Q ss_pred HHHHhhhhccccchhhhhhhh--hccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHHHHHHh
Q psy6269 255 LGKLSGSLRLFGNTLIIISVL--TTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLT 326 (366)
Q Consensus 255 l~~~ns~vNP~~n~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~~~ 326 (366)
+..+-..+.-+||.+++.++. +.+++||++|+|+.|||+||++++++..|.++.. . .++.|.+.+.|+.
T Consensus 38 ~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~-~--~~w~fG~~lCk~~ 108 (338)
T PHA03234 38 INGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNR-E--ALFNFNQAFCQCV 108 (338)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--CCccCchhHHHHH
Confidence 333444566779999999665 5566799999999999999999976544433211 1 3456666666654
No 27
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=97.45 E-value=5.5e-05 Score=67.18 Aligned_cols=59 Identities=39% Similarity=0.649 Sum_probs=45.2
Q ss_pred cchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHHHHHH
Q psy6269 266 GNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRL 325 (366)
Q Consensus 266 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~~ 325 (366)
||.++++++.++|++|++.|+|+.|||++|++.++...|........ ....+.+...++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~-~~~~~~~~~C~~ 59 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLF-DDWIFSSFLCRI 59 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-SSCTSHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccccccc-cccccccccccc
Confidence 89999999999999999999999999999999999888876544111 234444444443
No 28
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=97.36 E-value=0.0021 Score=55.78 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=79.3
Q ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCc------cCc-c-ccchhhHHHHHHHHHHHHHHHhhhhhhh-
Q psy6269 5 GWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLT------YSR-K-TRSKKLALYMILCVWVLALVITCPPILG- 75 (366)
Q Consensus 5 g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~------y~~-~-~~t~~~a~~~i~~~Wi~s~l~~~p~~~~- 75 (366)
++..|.+++++.......+.+.+.+||+.=|+.|.+|-+ ..+ . ...+..+..+..+.|++...+ .+++
T Consensus 70 ~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~l---a~i~~ 146 (201)
T PF11710_consen 70 PSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASL---AFIGL 146 (201)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHH---HHhcc
Confidence 457999999999999999999999999999999999921 100 0 001122222233444443333 2332
Q ss_pred ccccCCCCCCcccccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6269 76 WYDKDRHRDKRCGYNQ-NRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNN 128 (366)
Q Consensus 76 ~~~~~~~~~~~C~~~~-~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~ 128 (366)
......+....|-.+. ...+.....-+.-++-.+++++.|+.|+..+||+-++
T Consensus 147 ~~~~Y~~~g~WCWi~~~~~~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 147 GGPGYGPAGAWCWIPSRYEWYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIRR 200 (201)
T ss_pred ccCcccccCcEEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 1222334567886544 4445665555556677888899999999999988664
No 29
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.31 E-value=0.0092 Score=56.94 Aligned_cols=36 Identities=28% Similarity=0.213 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCcc
Q psy6269 12 WVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRK 47 (366)
Q Consensus 12 ~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~ 47 (366)
.+++..-..+...+.+.++++||.+|-..--.|.++
T Consensus 126 ~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~ 161 (365)
T PF03125_consen 126 GGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK 161 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555666789999999999999998888654
No 30
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=97.20 E-value=0.022 Score=52.74 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=42.8
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhh
Q psy6269 8 LCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILG 75 (366)
Q Consensus 8 ~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~ 75 (366)
-..++.++..........++..+=-+||.++...-+ +.. .++.-....+..++++.+...|....
T Consensus 84 ~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~-~~~--~~~~r~~~~~~~y~~~~~~~~~~~~~ 148 (302)
T PF10318_consen 84 PTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS-RSL--WKKIRIIFIIFNYIIAFLFFIPIYLS 148 (302)
T ss_pred ChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc-ccc--chhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 456666777777777888888889999999997654 111 22223344555566666676676663
No 31
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=97.16 E-value=0.00016 Score=67.19 Aligned_cols=187 Identities=16% Similarity=0.118 Sum_probs=103.8
Q ss_pred cccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCC
Q psy6269 3 EFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRH 82 (366)
Q Consensus 3 ~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~ 82 (366)
.++....+....+.-.+...+...++.==+.||.+|++|.+. +.. +.++....++..-+.++.......+.....++.
T Consensus 76 ~~~~~~~~~l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l-~~f-~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~ 153 (307)
T PF10326_consen 76 FLSKSIGQILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKL-RYF-SGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEES 153 (307)
T ss_pred cccchheeehhhhhhhhHHHHHHHHHhHhhhheeeeccchhh-ccc-cccceeeeehhhhhhcccceEEEeehhccchhh
Confidence 344556666777777778888888888889999999999863 333 333222222222122222111111111100000
Q ss_pred --------------CCCcc----------------cccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy6269 83 --------------RDKRC----------------GYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEAL 132 (366)
Q Consensus 83 --------------~~~~C----------------~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~ 132 (366)
+.... ..++..............+.+.++++|-.++++++++..+..
T Consensus 154 ~~~lr~~~~~~y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~--- 230 (307)
T PF10326_consen 154 DEYLREELLENYGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM--- 230 (307)
T ss_pred hhhhccccccccCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc---
Confidence 00000 011111123334455567888899999999998884433221
Q ss_pred hccccccchhhHhHhhhhcccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHH
Q psy6269 133 NHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTA 212 (366)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 212 (366)
..+..+-+++..
T Consensus 231 --------------------------------------------------------------------S~~~~~lq~QLf 242 (307)
T PF10326_consen 231 --------------------------------------------------------------------SSKTRKLQKQLF 242 (307)
T ss_pred --------------------------------------------------------------------ChhhHHHHHHHH
Confidence 112336677777
Q ss_pred HHHHHHH-HHHHHhchhHHHHHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccc
Q psy6269 213 QTLSVVV-GGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLF 265 (366)
Q Consensus 213 k~l~~v~-~~f~vcwlP~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~ 265 (366)
+.+.+=+ +-.++..+|..+......+.-+ ......+...+..+.+++||+
T Consensus 243 ~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~---~~~~~~~~~~~~~~yP~iDpl 293 (307)
T PF10326_consen 243 KALVIQTIIPFIFMYIPVFIVFILPFFGID---LGFFSNIISILISLYPAIDPL 293 (307)
T ss_pred HHHHHHhhhhheeeecchhheeeeeccCCC---CCccccHhhhhEEEEeehhhh
Confidence 7777655 4466778899988877655322 123334556677778899999
No 32
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.04 E-value=0.029 Score=52.66 Aligned_cols=42 Identities=26% Similarity=0.243 Sum_probs=35.9
Q ss_pred cccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCcc
Q psy6269 3 EFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTY 44 (366)
Q Consensus 3 ~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y 44 (366)
.+.+.-|.....+...+.....+.-+++.+||.+|-..|-.|
T Consensus 95 ~f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~ 136 (328)
T PF02117_consen 95 LFTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYY 136 (328)
T ss_pred EeecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence 455678888888888998899999999999999999888543
No 33
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=97.03 E-value=0.00042 Score=67.29 Aligned_cols=49 Identities=29% Similarity=0.651 Sum_probs=38.4
Q ss_pred HHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEE
Q psy6269 257 KLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAV 307 (366)
Q Consensus 257 ~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 307 (366)
.+-.++.-+||.+++..+. .|++|+++|+|+.|||+||+++ ++.+|++.
T Consensus 106 ~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~-~l~lPf~i 154 (417)
T PHA02638 106 IIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIF-VIDFPFII 154 (417)
T ss_pred HHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3344455679999986654 5889999999999999999988 45788754
No 34
>PHA02834 chemokine receptor-like protein; Provisional
Probab=96.96 E-value=0.00069 Score=63.54 Aligned_cols=50 Identities=26% Similarity=0.529 Sum_probs=38.0
Q ss_pred HHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceE
Q psy6269 255 LGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFA 306 (366)
Q Consensus 255 l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 306 (366)
+..+-..+.-+||.++++.+.++|++ +++|+|+.|||+||++. ++.+|+.
T Consensus 34 ~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~ 83 (323)
T PHA02834 34 FYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFI 83 (323)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHH
Confidence 33333445567999999988875554 57899999999999987 6678864
No 35
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=96.93 E-value=0.12 Score=46.18 Aligned_cols=112 Identities=18% Similarity=0.273 Sum_probs=69.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhc-----cccCCCCCC
Q psy6269 11 IWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGW-----YDKDRHRDK 85 (366)
Q Consensus 11 ~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~-----~~~~~~~~~ 85 (366)
+..+...++.++-++.-.+||++|....-.- ++..++-.+....+=+..+|+++.....-....- +....+...
T Consensus 92 ~~Sy~idf~h~siLfsNlviaIqR~fVFFfr-~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L 170 (305)
T PF04789_consen 92 FMSYLIDFCHYSILFSNLVIAIQRFFVFFFR-NLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQL 170 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeeeh-hhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEE
Confidence 4456667888888999999999998877632 2122222344455566678888887765544432 111222345
Q ss_pred ccccc-------CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6269 86 RCGYN-------QNRGYVVFSGMGSFFIPLLVVLYVYARISCVIAR 124 (366)
Q Consensus 86 ~C~~~-------~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~ 124 (366)
.|... .+.....+..++.+.+|+.+.+ +|+.+..++-.
T Consensus 171 ~C~~~~~~v~~~~P~~IqiiE~ilQ~~IPi~Il~-iYiAIIiKI~~ 215 (305)
T PF04789_consen 171 NCETCNSVVDISPPRGIQIIEIILQFGIPIFILV-IYIAIIIKIIK 215 (305)
T ss_pred EcCCCCeeEeeCCCCchhHHHHHHHHhHHHHHHH-HHHHHHHHHHH
Confidence 67543 2455677899999999987655 55555544443
No 36
>PHA03235 DNA packaging protein UL33; Provisional
Probab=96.87 E-value=0.00082 Score=65.07 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=37.6
Q ss_pred HHHHHhhhhccccchhhhhhhhhcccc--ccchhhHHHHHHHHHHHhhhhccceE
Q psy6269 254 WLGKLSGSLRLFGNTLIIISVLTTRRL--RTVTNCFVMSLAVADWLVGIFVMPFA 306 (366)
Q Consensus 254 ~l~~~ns~vNP~~n~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i 306 (366)
.+..+-..+.-+||.++++++.+.+|. ++.+|+|++|||+||++. ++.+|+.
T Consensus 37 ~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~ 90 (409)
T PHA03235 37 FINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFI 90 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHH
Confidence 333333445566899999987654443 467889999999999987 5678864
No 37
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.39 E-value=0.36 Score=44.20 Aligned_cols=90 Identities=11% Similarity=0.088 Sum_probs=57.3
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCcc-ccchhhHHHHHHHHHHHHHHHhhhhhhhccccCC-CCC
Q psy6269 7 ILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRK-TRSKKLALYMILCVWVLALVITCPPILGWYDKDR-HRD 84 (366)
Q Consensus 7 ~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~-~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~-~~~ 84 (366)
..|.+..-+.......-.....+|+-.=| .|..+...... -.++|+...-+..++.+.++.+....+......+ ...
T Consensus 57 ~wCDI~~kl~~~~~~g~~~a~lcI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~ 135 (283)
T PF02076_consen 57 VWCDISTKLIIGSSVGIPAASLCIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVED 135 (283)
T ss_pred eeeeehHHHHHHHHHHHHHHHHHHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEecc
Confidence 78999988888877776655555555444 24444332111 1146777888888999999988877765433332 357
Q ss_pred CcccccCCcchhh
Q psy6269 85 KRCGYNQNRGYVV 97 (366)
Q Consensus 85 ~~C~~~~~~~~~~ 97 (366)
..|......+...
T Consensus 136 ~GC~~~~~~s~~~ 148 (283)
T PF02076_consen 136 VGCYPAIYPSWPT 148 (283)
T ss_pred cCCccCCCCCHHH
Confidence 7897766555433
No 38
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=96.35 E-value=0.0024 Score=57.85 Aligned_cols=48 Identities=31% Similarity=0.539 Sum_probs=42.1
Q ss_pred hccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEe
Q psy6269 262 LRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVAL 309 (366)
Q Consensus 262 vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~ 309 (366)
+.-+||..++..+.++|+||||++++++.||++|++.+....|.....
T Consensus 3 ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~ 50 (257)
T PF10320_consen 3 IGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFL 50 (257)
T ss_pred EEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345699999999999999999999999999999999988777766544
No 39
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=96.23 E-value=0.26 Score=45.66 Aligned_cols=115 Identities=10% Similarity=0.008 Sum_probs=73.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhcc---ccCCCCC-C
Q psy6269 10 DIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWY---DKDRHRD-K 85 (366)
Q Consensus 10 ~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~---~~~~~~~-~ 85 (366)
++..++.....+.+.+..++.++=|..-+..|.++.+. .++.....+-.+.+.+++.++|.+...+ ..+.+-. +
T Consensus 104 k~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i--~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~fG 181 (307)
T PF10322_consen 104 KILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKI--CRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFPFG 181 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHH--HHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCCCC
Confidence 56778889999999999999999999999999875433 4444455666677777777777655321 1111111 1
Q ss_pred cc----cccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6269 86 RC----GYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRH 126 (366)
Q Consensus 86 ~C----~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~ 126 (366)
.= ...+.+.......++...+-...++++++.++.++|+.+
T Consensus 182 AI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 182 AIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred EEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 111222222333444444556777888898998998876
No 40
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=96.17 E-value=0.027 Score=40.49 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=48.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhch-hHHHHHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccc
Q psy6269 204 SLKRESKTAQTLSVVVGGFIACWL-PFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLF 265 (366)
Q Consensus 204 ~~~~~~k~~k~l~~v~~~f~vcwl-P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~ 265 (366)
+.++-+|.+|.+++=-++|+++|+ |+.+-.+-.....+.....+...+..++..+|..+|-+
T Consensus 3 ~r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~l 65 (76)
T PF11970_consen 3 RRKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCL 65 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhh
Confidence 446677888999999999999999 87766555443333444567888888999999999999
No 41
>KOG4564|consensus
Probab=96.01 E-value=0.085 Score=51.31 Aligned_cols=112 Identities=11% Similarity=0.142 Sum_probs=67.7
Q ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCC
Q psy6269 5 GWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRD 84 (366)
Q Consensus 5 g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~ 84 (366)
+...|+....+...+..+..+=|.+=.+.=|-.++--.. ..++.-..-+.+.|.+.+++..+-.+.... ..+
T Consensus 225 ~~~~Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~-----ser~~~~~y~~iGWG~P~v~v~~Wai~r~~---~~d 296 (473)
T KOG4564|consen 225 NPVGCKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFF-----SERRYFWLYLLIGWGVPAVFVVVWAIVRLY---LED 296 (473)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeec-----cCccHHHHHHHHhhCCcHHHhhhHHhHhee---ecc
Confidence 457899999999999988888888878777777765432 134445667788999999987776665421 123
Q ss_pred CcccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6269 85 KRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIAR 124 (366)
Q Consensus 85 ~~C~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~ 124 (366)
..|-..........+.-.-.++++++=.+..+.|.|.+-+
T Consensus 297 ~~CW~~~~~~~~~WIi~gPi~~ai~vNf~flinIvrILv~ 336 (473)
T KOG4564|consen 297 TGCWDSNDTGHIWWIIRGPILLAILVNFIFLINIVRILVT 336 (473)
T ss_pred ccccccCCCcceEEEEeccHHHHHHHHHHHHHHHHHHHHH
Confidence 3686544432222222222223334444445555554433
No 42
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=95.72 E-value=0.01 Score=55.73 Aligned_cols=44 Identities=30% Similarity=0.581 Sum_probs=35.8
Q ss_pred hhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceE
Q psy6269 261 SLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFA 306 (366)
Q Consensus 261 ~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 306 (366)
.+.-+||.++++.+.+. ++|++.|+|+.|||++|++.++. .|..
T Consensus 52 ~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~-~~~~ 95 (335)
T PHA03087 52 FFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMT-LPFQ 95 (335)
T ss_pred HHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHh-HHHH
Confidence 34456899999888887 99999999999999999987664 4443
No 43
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.26 E-value=0.38 Score=42.19 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=37.2
Q ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCcc
Q psy6269 5 GWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRK 47 (366)
Q Consensus 5 g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~ 47 (366)
+...||.......+..+.+++.-..+++|||+|.....+|.+.
T Consensus 81 ~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~ 123 (236)
T PF02175_consen 81 DPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENT 123 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccC
Confidence 4467888888899999999999999999999999998887543
No 44
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=95.14 E-value=0.0056 Score=54.71 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCcc
Q psy6269 8 LCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDKRC 87 (366)
Q Consensus 8 ~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~~~C 87 (366)
.|...+++.+.+..++..=+.+.++|-|..+..+... .+++.....+..|.+++++........ ....+...|
T Consensus 71 ~C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~gwg~P~~iv~i~~~~~--~~~y~~~~C 143 (242)
T PF00002_consen 71 LCRAIAILLHYFFLASFFWMLVEAFYLYRLLVKVFNS-----SRRRFWWYYLIGWGIPALIVVISVAVN--SDGYGNDNC 143 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhhhHhHHHHHHHHHHHHHHHHHhheeEEEeecc-----cchhhheeeeeeecCcceeeeeeeeec--ccccccccc
Confidence 4999999999999999999999999999999887431 233345566778998888776655443 222345678
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy6269 88 GYNQNRGYVVFSGMGSFFIPLLVVLYVYARI 118 (366)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I 118 (366)
-... ..... ..+..|..+++..+..+
T Consensus 144 Wl~~-~~~~~----~~f~~P~~~~l~in~vi 169 (242)
T PF00002_consen 144 WLSN-DWGFI----WAFVGPVLIILLINIVI 169 (242)
T ss_dssp -------------------------------
T ss_pred cccC-CCceE----EEEEecccceecccchh
Confidence 3322 22222 23456666555444433
No 45
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=95.09 E-value=0.54 Score=43.26 Aligned_cols=61 Identities=8% Similarity=-0.062 Sum_probs=42.6
Q ss_pred hhhhhhHHHHHHHHHHHHH-HHHhchhHHHHHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccc
Q psy6269 203 SSLKRESKTAQTLSVVVGG-FIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLF 265 (366)
Q Consensus 203 ~~~~~~~k~~k~l~~v~~~-f~vcwlP~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~ 265 (366)
+..+.+++..|.+.+-++. -++|..|-.+......+. -+...+...........=+++||+
T Consensus 236 ~T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~--i~~~~~~n~~~~iAls~FPf~DPl 297 (310)
T PF10319_consen 236 KTKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFG--IDLGRWNNYFSVIALSAFPFLDPL 297 (310)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHc--CChhHHHHHHHHHHHHHccccCch
Confidence 3457788888888877665 578899988887665553 334566666666655555788998
No 46
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=95.02 E-value=0.72 Score=42.03 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCccCccc
Q psy6269 18 CLCTASILSLCAISIDRYLAVTQPLTYSRKT 48 (366)
Q Consensus 18 ~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~ 48 (366)
....+.......||+||.+|+..|..|+...
T Consensus 90 ~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r 120 (273)
T PF10316_consen 90 NLGSIRSILALIIALDRVFAVYFPIFYHNYR 120 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHccC
Confidence 3345677788999999999999999987664
No 47
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=93.46 E-value=0.03 Score=45.90 Aligned_cols=77 Identities=12% Similarity=0.042 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCC-----CCCCcc
Q psy6269 13 VSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDR-----HRDKRC 87 (366)
Q Consensus 13 ~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~-----~~~~~C 87 (366)
..+.++++....+...+|+++|-..|.+|.+...++ +.++.+.-+.+..++.+...+.|.+....... .-...|
T Consensus 48 TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~F-s~~kl~~YC~~i~i~~~i~LlIPy~S~C~vnf~~~~~~f~s~C 126 (153)
T PF03383_consen 48 TLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWF-SDKKLWIYCGIIAILSFISLLIPYFSDCYVNFDARTFSFVSAC 126 (153)
T ss_pred eeeehHHHHHHHHHHHHHHHhheEEEEecCCCcccc-ccchhHHHHHHHHHHHHHHHHhhcCCCCcEEEEeeeeEEEEcc
Confidence 456678888889999999999999999999854477 55556666666777777776767665533222 235678
Q ss_pred ccc
Q psy6269 88 GYN 90 (366)
Q Consensus 88 ~~~ 90 (366)
.++
T Consensus 127 ap~ 129 (153)
T PF03383_consen 127 APD 129 (153)
T ss_pred CCC
Confidence 764
No 48
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=92.62 E-value=9 Score=35.92 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=63.0
Q ss_pred ccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCC
Q psy6269 4 FGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHR 83 (366)
Q Consensus 4 ~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~ 83 (366)
.++..|-+...+.+.+..++..=-+.+++.-|++...-.. +.. -.+.....-+++|.++++..+.....-....++-
T Consensus 89 ~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~-~e~--i~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~l 165 (328)
T PF01534_consen 89 LENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWG-SEA--IEKKSSYFHLVAWGIPAVLTIAVLALRKVDGDEL 165 (328)
T ss_pred CCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccC-cch--hhhhcchhhhHHhhhhHHHHHHHHHhcccccccc
Confidence 4568999999999999988888888889999999887544 222 2344666789999999998877666544444445
Q ss_pred CCcccccC
Q psy6269 84 DKRCGYNQ 91 (366)
Q Consensus 84 ~~~C~~~~ 91 (366)
.+.|....
T Consensus 166 tGiC~Vg~ 173 (328)
T PF01534_consen 166 TGICFVGN 173 (328)
T ss_pred cceeEEeC
Confidence 68896443
No 49
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=92.23 E-value=0.71 Score=39.57 Aligned_cols=110 Identities=12% Similarity=0.146 Sum_probs=56.2
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCCC
Q psy6269 6 WILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK 85 (366)
Q Consensus 6 ~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~~ 85 (366)
-++|-+.--+......+.....+++|+|||+.|+.-.|-+.+. ++..--++++...+.-+...-.......+
T Consensus 114 I~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl~~~f--------~v~v~~iit~~~~~~a~~~~~~G~~t~Nd 185 (226)
T PF06681_consen 114 IFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKRLSVWF--------VVVVHVIITFPFIFYAILNFPFGEPTPND 185 (226)
T ss_pred EEeehHHHhHHHHHhhhhccchhhhhhhhhheeeecccCCchH--------HHHHHHHHHHHHHHHHHHhcccCCCCcCC
Confidence 3578877776666666666666789999999999865533221 22222222222211111112222233467
Q ss_pred cccc-cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6269 86 RCGY-NQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIAR 124 (366)
Q Consensus 86 ~C~~-~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~ 124 (366)
.|.. ...+....+.....+.+++ +-++.+..|++.++|
T Consensus 186 iCa~L~fs~~~~~Vri~~tl~l~l-fAVl~N~~i~~fvkk 224 (226)
T PF06681_consen 186 ICAILRFSKSMELVRISYTLGLNL-FAVLLNFVILRFVKK 224 (226)
T ss_pred eeeEEEEccchHHHHHHHHhHHHH-HHHHHHHhHheeeec
Confidence 8863 2333332222233444443 334566677777654
No 50
>PF13853 7tm_4: Olfactory receptor
Probab=85.20 E-value=0.058 Score=44.15 Aligned_cols=87 Identities=18% Similarity=0.206 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccc---cCCCCCC---------cccccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6269 55 LYMILCVWVLALVITCPPILGWYD---KDRHRDK---------RCGYNQ-NRGYVVFSGMGSFFIPLLVVLYVYARISCV 121 (366)
Q Consensus 55 ~~~i~~~Wi~s~l~~~p~~~~~~~---~~~~~~~---------~C~~~~-~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~ 121 (366)
..+.++.|+.+++..++....... -+..+.. .|.+.. ++.+......+..+.|+.++++.|++|.+.
T Consensus 4 ~~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~a 83 (144)
T PF13853_consen 4 LLLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRA 83 (144)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEeh
Confidence 346677888888877776653211 1111222 343333 333444555666789999999999999999
Q ss_pred HHHHhhhhhhhhccccccch
Q psy6269 122 IARRHNNLEALNHQHTLGRH 141 (366)
Q Consensus 122 lr~~~~~~~~~~~~~~~~~~ 141 (366)
+.|......+.+...++++|
T Consensus 84 vlki~S~~~r~KAfsTC~sH 103 (144)
T PF13853_consen 84 VLKIPSAEGRSKAFSTCSSH 103 (144)
T ss_pred hhcccccccccccccccccC
Confidence 99988777777787777776
No 51
>KOG2087|consensus
Probab=82.44 E-value=0.72 Score=43.03 Aligned_cols=67 Identities=22% Similarity=0.329 Sum_probs=49.6
Q ss_pred HHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHHHHHHh
Q psy6269 254 WLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLT 326 (366)
Q Consensus 254 ~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~~~ 326 (366)
...++-+.+-++||++++......+.-.++.-++++|||+||++.++... +.+. ..-.+|.++-+..
T Consensus 29 i~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~--~ia~----vD~~~~gey~~~a 95 (363)
T KOG2087|consen 29 ISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLG--LIAS----VDAKTRGEYYKHA 95 (363)
T ss_pred ehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHH--HHHH----hhHHHHHHHHHHH
Confidence 33444556678999999999999999899999999999999999875322 2222 5666666666544
No 52
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=67.27 E-value=3.3 Score=38.45 Aligned_cols=34 Identities=24% Similarity=0.490 Sum_probs=27.0
Q ss_pred hhhcccccc-chhhHHHHHHHHHHHhhhhccceEE
Q psy6269 274 VLTTRRLRT-VTNCFVMSLAVADWLVGIFVMPFAV 307 (366)
Q Consensus 274 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iy 307 (366)
++..|+||+ ++|.++..+|++|+++.....+.-.
T Consensus 20 VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~ 54 (318)
T PF10324_consen 20 VLTRKSMRSSSINILLIGIAICDLLYMLSILIWEL 54 (318)
T ss_pred hcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677998 6999999999999999776555433
No 53
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=58.60 E-value=1.4e+02 Score=26.79 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCcccccCCcc
Q psy6269 15 LDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDKRCGYNQNRG 94 (366)
Q Consensus 15 l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~~~C~~~~~~~ 94 (366)
......-+--+.+.++|++|++---.|-.-+....+.+.....+....++..+--+............+.... .+....
T Consensus 88 ~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~~~~~~~-~~~~~~ 166 (267)
T PF10325_consen 88 ILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFNNESTEE-IETFSY 166 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh-hhHHHH
Confidence 3444445566689999999999999997311111133333333333333333332222221111111111111 111111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6269 95 YVVFSGMGSFFIPLLVVLYVYARISCVIARRHN 127 (366)
Q Consensus 95 ~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~ 127 (366)
+......... +=+.+..++|+-|...+||.++
T Consensus 167 ~~~~~~~~~~-~ll~~S~lLYIPI~isirK~~~ 198 (267)
T PF10325_consen 167 IYVIFYIILN-ILLFLSALLYIPIFISIRKLSH 198 (267)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHHHHHhhc
Confidence 1111122222 2255567899999999988765
No 54
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=54.83 E-value=13 Score=34.52 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=38.8
Q ss_pred HHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhc
Q psy6269 255 LGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFV 302 (366)
Q Consensus 255 l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (366)
+....|++--+|=+++++++..-|++|++.|=++.-|+++|++..++.
T Consensus 12 i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~ 59 (303)
T PF05462_consen 12 IELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVAS 59 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 334445555678889999999999999999999999999999877644
No 55
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=49.78 E-value=9 Score=34.74 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=37.4
Q ss_pred hhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhcc
Q psy6269 260 GSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVM 303 (366)
Q Consensus 260 s~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (366)
|.+.-+.|.++++.+.+.+++|++=+.+-.+.|++|.+++...+
T Consensus 4 s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l 47 (274)
T PF10328_consen 4 SIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFL 47 (274)
T ss_pred eHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 44445578899999999999999999999999999999987543
No 56
>PF15050 SCIMP: SCIMP protein
Probab=49.61 E-value=73 Score=24.87 Aligned_cols=32 Identities=9% Similarity=0.270 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy6269 97 VFSGMGSFFIPLLVVLYVYARISCVIARRHNNL 129 (366)
Q Consensus 97 ~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~ 129 (366)
+++.+...++.+.+-+++|. ++|..+|+.++.
T Consensus 10 iiLAVaII~vS~~lglIlyC-vcR~~lRqGkkw 41 (133)
T PF15050_consen 10 IILAVAIILVSVVLGLILYC-VCRWQLRQGKKW 41 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHccccc
Confidence 33333334444444444444 334444444433
No 57
>KOG2765|consensus
Probab=42.56 E-value=3.1e+02 Score=26.24 Aligned_cols=28 Identities=11% Similarity=-0.073 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhchhHHHHH
Q psy6269 206 KRESKTAQTLSVVVGGFIACWLPFFIVY 233 (366)
Q Consensus 206 ~~~~k~~k~l~~v~~~f~vcwlP~~i~~ 233 (366)
...++++|..+......+++-+-+....
T Consensus 153 ~t~~~~ak~sl~fc~lWF~anl~~naAL 180 (416)
T KOG2765|consen 153 LTATQTAKLSLFFCPLWFLANLTSNAAL 180 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555555555555544444433
No 58
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=35.63 E-value=54 Score=22.24 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=14.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhch
Q psy6269 204 SLKRESKTAQTLSVVVGGFIACWL 227 (366)
Q Consensus 204 ~~~~~~k~~k~l~~v~~~f~vcwl 227 (366)
+.++.++...+++++.++|++-|+
T Consensus 31 ~qk~~~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 31 RQKRMRKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666667766666666553
No 59
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=35.24 E-value=22 Score=31.38 Aligned_cols=48 Identities=25% Similarity=0.305 Sum_probs=3.7
Q ss_pred HHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhh
Q psy6269 254 WLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIF 301 (366)
Q Consensus 254 ~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (366)
.+.++.+++.-++-+++++.....|++|+..+....||++++++..+.
T Consensus 5 ~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~ 52 (242)
T PF00002_consen 5 IISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLS 52 (242)
T ss_dssp HHHHHHHH----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHH
Confidence 344444555555666777777777999999999999999999988763
No 60
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=32.46 E-value=70 Score=24.13 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy6269 105 FIPLLVVLYVYARISCVIARRHNNLEALNH 134 (366)
Q Consensus 105 ~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~ 134 (366)
+..++++.+.|+.++|--+|+.+....+-.
T Consensus 13 l~~vl~~~ifyFli~RPQrKr~K~~~~ml~ 42 (97)
T COG1862 13 LPLVLIFAIFYFLIIRPQRKRMKEHQELLN 42 (97)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 334555677888888877777666655544
No 61
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=28.03 E-value=82 Score=29.13 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=32.3
Q ss_pred HHHHHHhhhhccccchhhhhhhh----hccccccchhhHHHHHHHHHHHhhhh
Q psy6269 253 TWLGKLSGSLRLFGNTLIIISVL----TTRRLRTVTNCFVMSLAVADWLVGIF 301 (366)
Q Consensus 253 ~~l~~~ns~vNP~~n~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (366)
..+...-..+.-+||.+|+.+-. +.||+. |.|..|.+||+++++.-.+
T Consensus 10 ~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~-~~d~IL~~La~sr~~l~~~ 61 (303)
T PF05296_consen 10 LIILVVEFIIGILGNGFIVLVNCSDWVKSRKLS-PSDQILTSLAISRILLQWV 61 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHH
Confidence 34444445555668888777765 333333 7999999999999876543
No 62
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=26.07 E-value=54 Score=28.34 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=20.2
Q ss_pred ccccccchhhHHHHHHHHHHHhhhh
Q psy6269 277 TRRLRTVTNCFVMSLAVADWLVGIF 301 (366)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (366)
++|.|+--+-++.||.+||+++++.
T Consensus 29 ~~r~~~fR~~LIl~L~~aD~~qal~ 53 (201)
T PF11710_consen 29 TYRRRSFRHQLILNLLLADFIQALA 53 (201)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3566666667999999999999874
No 63
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=25.98 E-value=2.8e+02 Score=26.60 Aligned_cols=42 Identities=5% Similarity=0.032 Sum_probs=29.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy6269 93 RGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNH 134 (366)
Q Consensus 93 ~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~ 134 (366)
..+.....+..-++|++.++..=+|+.|.-++|+++..+...
T Consensus 299 ~~~~~~i~~~la~i~~i~l~~~vvR~vR~~~~hr~~~~~y~~ 340 (374)
T PF01528_consen 299 ANLHTGIAINLAVIAIICLIMMVVRLVRAFLYHRRRSTRYYP 340 (374)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 335555666667788888888889999988887765444444
No 64
>KOG2575|consensus
Probab=25.85 E-value=68 Score=30.84 Aligned_cols=26 Identities=31% Similarity=0.681 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHhchhHHHH
Q psy6269 207 RESKTAQTLSVVVGGFIACWLPFFIV 232 (366)
Q Consensus 207 ~~~k~~k~l~~v~~~f~vcwlP~~i~ 232 (366)
.-.+..+.-+++++.|+++|+|+...
T Consensus 253 ~f~ri~~ia~~Vv~TF~iiw~P~~~~ 278 (510)
T KOG2575|consen 253 SFARIIKIALAVVGTFVIIWLPFLLS 278 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778899999999999999999654
No 65
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=24.37 E-value=1e+02 Score=22.45 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=17.7
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhhhhhhc
Q psy6269 106 IPLL-VVLYVYARISCVIARRHNNLEALNH 134 (366)
Q Consensus 106 lP~~-ii~~~y~~I~~~lr~~~~~~~~~~~ 134 (366)
+|++ ++++.|..+.|--+|++++...+..
T Consensus 7 ~~~vv~~~i~yf~~~rpqkK~~k~~~~m~~ 36 (84)
T TIGR00739 7 LPLVLIFLIFYFLIIRPQRKRRKAHKKLIE 36 (84)
T ss_pred HHHHHHHHHHHHheechHHHHHHHHHHHHH
Confidence 4433 4556787777766666666555544
No 66
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=23.60 E-value=1.7e+02 Score=21.16 Aligned_cols=26 Identities=4% Similarity=0.174 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy6269 108 LLVVLYVYARISCVIARRHNNLEALN 133 (366)
Q Consensus 108 ~~ii~~~y~~I~~~lr~~~~~~~~~~ 133 (366)
++++.+.|....+--+|++++...+.
T Consensus 9 v~~~~i~yf~~~rpqkk~~k~~~~m~ 34 (82)
T PF02699_consen 9 VIIFVIFYFLMIRPQKKQQKEHQEML 34 (82)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTGG
T ss_pred HHHHHHHhhheecHHHHHHHHHHHHH
Confidence 35556677777766555555444443
No 67
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=21.88 E-value=1.1e+02 Score=23.79 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy6269 105 FIPLLVVLYVYARISCVIARRHNNLEAL 132 (366)
Q Consensus 105 ~lP~~ii~~~y~~I~~~lr~~~~~~~~~ 132 (366)
++|+++++..|..++|--+|++++...+
T Consensus 6 il~~vv~~~i~yf~iRPQkKr~Ke~~em 33 (113)
T PRK06531 6 IIMFVVMLGLIFFMQRQQKKQAQERQNQ 33 (113)
T ss_pred HHHHHHHHHHHHheechHHHHHHHHHHH
Confidence 3454444443333444444444443333
Done!