RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6269
(366 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 109 bits (274), Expect = 6e-28
Identities = 53/152 (34%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG LC + L V ASIL L AISIDRYLA+ PL Y R R+ + A +IL V
Sbjct: 44 WPFGDALCKLVGFLFVVNGYASILLLTAISIDRYLAIVHPLRYRRI-RTPRRAKVLILVV 102
Query: 62 WVLALVITCPPILGW--YDKDRHRDKRCG-----YNQNRGYVVFSGMGSFFIPLLVVLYV 114
WVLAL+++ PP+L + C + R Y + S + F +PLLV+L
Sbjct: 103 WVLALLLSLPPLLFSWLRTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVC 162
Query: 115 YARISCVIARRHNNLEALNHQHTLGRHELAKI 146
Y I + R+ A + + K
Sbjct: 163 YTLILRTL-RKRARSGASQARAKRSSSKERKA 193
Score = 45.4 bits (108), Expect = 2e-05
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 274 VLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
+L T++LRT TN F+++LAVAD L + + P+A+ +
Sbjct: 3 ILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVG 41
Score = 40.8 bits (96), Expect = 5e-04
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 187 SLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPF--LPAGTI 244
+L++ + S +E K A+ L VVV F+ CWLP+ IV L + L +
Sbjct: 169 TLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRL 228
Query: 245 SPLLSNSLTWLGKLS 259
P WL ++
Sbjct: 229 LPTALLITLWLAYVN 243
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 51.3 bits (123), Expect = 3e-07
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG C I L S+ + +S+DRY+A+ P S K + K + L +
Sbjct: 104 WSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHP-VKSNKINTVKYGYIVSLVI 162
Query: 62 WVLALVITCPPILGWYDKDRHRDKRCG--YNQNRGY--------VVFSGMGSFFIPLLVV 111
W+++++ T P + + K H C YN + GM IPL ++
Sbjct: 163 WIISIIETTPILFVYTTKKDHETLICCMFYNNKTMNWKLFINFEINIIGM---LIPLTIL 219
Query: 112 LYVYARISCVIARRHNN 128
LY Y++I + + +
Sbjct: 220 LYCYSKILITLKGINKS 236
Score = 32.1 bits (73), Expect = 0.48
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 248 LSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPF 305
S L + L GN +I+I VLT +++T + ++++LAV+D L+ + +PF
Sbjct: 39 NSTILIVVYSTIFFFGLVGN-IIVIYVLTKTKIKTPMDIYLLNLAVSD-LLFVMTLPF 94
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 40.7 bits (95), Expect = 8e-04
Identities = 31/126 (24%), Positives = 67/126 (53%), Gaps = 13/126 (10%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG +C + + + +++ + ISIDRY+ V + K ++K ++L ++L V
Sbjct: 91 WIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVN----ATKIKNKSISLSVLLSV 146
Query: 62 --WVLALVITCPPILGWYDKDRHRDKRC---GYNQNRGYVVF----SGMGSFFIPLLVVL 112
WV +++++ P ++ +Y + K+C Y++N + F + IPL++++
Sbjct: 147 AAWVCSVILSMPAMVLYYVDNTDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILI 206
Query: 113 YVYARI 118
Y Y++I
Sbjct: 207 YCYSKI 212
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 38.1 bits (88), Expect = 0.007
Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG +C + + +++ + +SIDRY A+ P+++ +K R+ + + + +
Sbjct: 161 WIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISF-QKYRTFNIGIILCIIS 219
Query: 62 WVLALVITCPPILGW------YDKDRHRDKRCGY-------NQNRGYVVFSGMGSF---- 104
W+L+L+IT P + + + Y N+ + F
Sbjct: 220 WILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINI 279
Query: 105 ---FIPLLVVLYVYARI 118
FIP+++ + Y +I
Sbjct: 280 LGMFIPIIIFAFCYIKI 296
Score = 30.8 bits (69), Expect = 1.3
Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 4/44 (9%)
Query: 262 LRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPF 305
L LFGN II+ +L ++++T+T+ ++ +LA++D IFV+ F
Sbjct: 111 LGLFGNAAIIM-ILFCKKIKTITDIYIFNLAISDL---IFVIDF 150
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 34.1 bits (79), Expect = 0.087
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAV 307
+FGN ++II ++LR+ + + +AD L + F V
Sbjct: 5 IFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFVV 48
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 32.0 bits (73), Expect = 0.45
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 286 CFVMSLAVADWLVGIFVMPFAVALH---------ITVPRSDFRLAFWRLTLKHCNKSRRT 336
++S A + L I ++ H RSD R L K + R
Sbjct: 70 LELISHACEERLRNILTKLIVLSRHRRDGIKSDPNYEIRSDVRRQLRFLAQKQKEEEERR 129
Query: 337 RAQRAHMNMLDSSCRMRKQQNN 358
+R + + D KQ+
Sbjct: 130 VERRRELGLEDPEQLRLKQKAK 151
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 30.3 bits (68), Expect = 1.9
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 209 SKTAQTLSVVVGGFIACWLPFFIVYLAN-PFLPAGTISPLLSNSLTWLGKLSGSLRLFGN 267
+K + A + +F+ +L LP +S LL + + L L+GS+ L
Sbjct: 579 NKEGCPIDFDGDDEGAYMI-YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCI 637
Query: 268 TLIIISVLTTRRLRTVTNCFVMSLAVADW 296
+ +S + C L++A W
Sbjct: 638 SCFFLSFGNSESAMIALLCLFGGLSIAAW 666
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 29.5 bits (67), Expect = 2.3
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 11 IWVSLDVCLCTASILSLCAISIDRYLAVTQP-LTYSRKTRSKKLALYMILCVWVLALVIT 69
+ +L + S LS RYLA+ P ++ +S +L +IL W+ L+I+
Sbjct: 82 AYYTLYIRCTGISFLSTN-----RYLAICFPISRLTKIWQSARLWK-IILIYWLPGLLIS 135
Query: 70 CP 71
Sbjct: 136 LV 137
>gnl|CDD|223433 COG0356, AtpB, F0F1-type ATP synthase, subunit a [Energy production
and conversion].
Length = 246
Score = 29.2 bits (66), Expect = 3.0
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 28/123 (22%)
Query: 207 RESKTAQ---TLSVVVGGFIAC---------WLPFFIVYLANPFLPAGTISPLLSNSLTW 254
ES TA TL++ + F+ FF + PF A + PL ++
Sbjct: 113 FESPTADINVTLALALLVFLLIHFYGIKKKGLGGFFKEFAFPPFPLAPLMLPL--EIVSE 170
Query: 255 LGK-LSGSLRLFGN------TLIIISVLTTRRLRTVTNCFVMSLAVA--DWLVG-----I 300
L K +S SLRLFGN L +I+ L + + ++++A D VG +
Sbjct: 171 LAKPISLSLRLFGNILAGEILLALIAGLVPYFMPQLGLPIILNVAWTAFDIFVGTLQAYV 230
Query: 301 FVM 303
F+M
Sbjct: 231 FMM 233
>gnl|CDD|233180 TIGR00912, 2A0309, spore germination protein (amino acid permease).
This model describes spore germination protein GerKB
and paralogs from Bacillus subtilis, Clostridium tetani,
and other known or predicted endospore-forming members
of the Firmicutes (low-GC Gram positive bacteria).
Members show some similarity to amino acid permeases
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 359
Score = 29.2 bits (66), Expect = 3.7
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 215 LSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLT-WLGKLSGSLRLFGNTLIIIS 273
+S+++GG I +L ++ + + F P S +LS L LG+L L + +I+
Sbjct: 38 ISIILGGLIIIFLLCLMIKIMSKF-PEKNFSEILSKYLGKILGRLLSILFIL--YFFLIA 94
Query: 274 VLTTR 278
R
Sbjct: 95 AYLIR 99
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 28.7 bits (65), Expect = 4.7
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 22 ASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVI 68
S L+ IS++R+ AV P Y + S K +I +W++A++I
Sbjct: 80 ISPLTHLLISLNRFCAVFFPFKYKKI-FSIKNTKIIITFIWIIAIII 125
>gnl|CDD|191610 pfam06799, DUF1230, Protein of unknown function (DUF1230). This
family consists of several hypothetical plant and
photosynthetic bacterial proteins of around 160 residues
in length. The function of this family is unknown
although looking at the species distribution the protein
may play a part in photosynthesis.
Length = 145
Score = 28.0 bits (63), Expect = 5.3
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 32 IDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDKRCGYNQ 91
++ Y + +S T KK +L +W+++ + P G + + +
Sbjct: 10 LNEYEELKDSWFFSWPTLEKKGYYRKLLKIWLISFPVFGPIASGSFPLRKSPLR------ 63
Query: 92 NRGYVVFSGMGSFFIPLLVVL-------YVYAR 117
++ + +G+ IPLL++L YV R
Sbjct: 64 ---LILSAALGALLIPLLILLRLYLGWSYVRKR 93
>gnl|CDD|129656 TIGR00565, trpE_proteo, anthranilate synthase component I,
proteobacterial subset. This enzyme resembles some
other chorismate-binding enzymes, including
para-aminobenzoate synthase (pabB) and isochorismate
synthase. There is a fairly deep split between two sets,
seen in the pattern of gaps as well as in amino acid
sequence differences. This group includes proteobacteria
such as E. coli and Helicobacter pylori but also the
gram-positive organism Corynebacterium glutamicum. The
second group includes eukaryotes, archaea, and most
other bacterial lineages; sequences from the second
group may resemble pabB more closely than other trpE
from this group [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 498
Score = 28.7 bits (64), Expect = 5.9
Identities = 42/176 (23%), Positives = 64/176 (36%), Gaps = 18/176 (10%)
Query: 165 LVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIA 224
L+L S+ I +D KSL L D +++ L ++ T Q LS G +
Sbjct: 20 LLLESAEIDSKDDLKSLL------------LVDAALKITCLG-DTVTIQALSPNGGALLQ 66
Query: 225 CWLPFFIVYLANPFLPAGTI--SPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRT 282
+ P + P +S L KL SL +F ++ SV +
Sbjct: 67 LLDAALPAGVEAVIQPNARVLRFPPVSPLLDEDAKLC-SLSVFDALRLLQSVKNKPKEPF 125
Query: 283 VTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSRRTRA 338
F L D + G +P A + P F LA + + H KS R +A
Sbjct: 126 AM--FFGGLFSYDLVAGFEDLPHLKAKNNNCPDFCFYLAETLIVIDHQKKSTRIQA 179
>gnl|CDD|218599 pfam05473, Herpes_UL45, UL45 protein. This family consists several
UL45 proteins. The herpes simplex virus UL45 gene
encodes an 18 kDa virion envelope protein whose function
remains unknown. It has been suggested that the 18 kDa
UL45 gene product is required for efficient growth in
the central nervous system at low doses and may play an
important role under the conditions of a naturally
acquired infection. This family also contains several
Varicellovirus UL45 or gene 15 proteins. The Equine
herpesvirus 1 UL45 protein represents a type II membrane
glycoprotein which has found to be non-essential for
EHV-1 growth in vitro but deletion reduces the viruses'
replication efficiency.
Length = 191
Score = 27.9 bits (62), Expect = 6.7
Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 255 LGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVP 314
L + G LR S TRR F + L+ +FV+ TVP
Sbjct: 10 LVPVEGVLRFQPTMDSGTSSRRTRRSPCACLLFTLGGFAIGVLLTMFVIVATFVF--TVP 67
Query: 315 RSDFRLA 321
R
Sbjct: 68 RMALESG 74
>gnl|CDD|153150 cd04878, ACT_AHAS, N-terminal ACT domain of the Escherichia coli
IlvH-like regulatory subunit of acetohydroxyacid
synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the
Escherichia coli IlvH-like regulatory subunit of
acetohydroxyacid synthase (AHAS). AHAS catalyses the
first common step in the biosynthesis of the three
branched-chain amino acids. The first step involves the
condensation of either pyruvate or 2-ketobutyrate with
the two-carbon hydroxyethyl fragment derived from
another pyruvate molecule, covalently bound to the
coenzyme thiamine diphosphate. Bacterial AHASs generally
consist of regulatory and catalytic subunits. The
effector (valine) binding sites are proposed to be
located in two symmetrically related positions in the
interface between a pair of N-terminal ACT domains with
the C-terminal domain of IlvH contacting the catalytic
dimer. Plants Arabidopsis and Oryza have tandem IlvH
subunits; both the first and second ACT domain sequences
are present in this CD. Members of this CD belong to the
superfamily of ACT regulatory domains.
Length = 72
Score = 25.9 bits (58), Expect = 7.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 114 VYARISCVIARRHNNLEALN 133
V RIS + ARR N+E+L
Sbjct: 13 VLNRISGLFARRGFNIESLT 32
>gnl|CDD|176498 cd08555, PI-PLCc_GDPD_SF, Catalytic domain of
phosphoinositide-specific phospholipase C-like
phosphodiesterases superfamily. The PI-PLC-like
phosphodiesterases superfamily represents the catalytic
domains of bacterial phosphatidylinositol-specific
phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic
phosphoinositide-specific phospholipase C (PI-PLC, EC
3.1.4.11), glycerophosphodiester phosphodiesterases
(GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D)
(sphingomyelin phosphodiesterase D, EC 3.1.4.41) from
spider venom, SMases D-like proteins, and phospholipase
D (PLD) from several pathogenic bacteria, as well as
their uncharacterized homologs found in organisms
ranging from bacteria and archaea to metazoans, plants,
and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing
the membrane lipid phosphoinositides to yield two
important second messengers, inositol phosphates and
diacylglycerol (DAG). GP-GDEs play essential roles in
glycerol metabolism and catalyze the hydrolysis of
glycerophosphodiesters to sn-glycerol-3-phosphate (G3P)
and the corresponding alcohols that are major sources of
carbon and phosphate. Both, PI-PLCs and GP-GDEs, can
hydrolyze the 3'-5' phosphodiester bonds in different
substrates, and utilize a similar mechanism of general
base and acid catalysis with conserved histidine
residues, which consists of two steps, a phosphotransfer
and a phosphodiesterase reaction. This superfamily also
includes Neurospora crassa ankyrin repeat protein NUC-2
and its Saccharomyces cerevisiae counterpart, Phosphate
system positive regulatory protein PHO81,
glycerophosphodiester phosphodiesterase (GP-GDE)-like
protein SHV3 and SHV3-like proteins (SVLs). The residues
essential for enzyme activities and metal binding are
not conserved in these sequence homologs, which might
suggest that the function of catalytic domains in these
proteins might be distinct from those in typical
PLC-like phosphodiesterases.
Length = 179
Score = 27.4 bits (61), Expect = 8.1
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 85 KRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRH-NNLEALNH 134
+ RG VV S + + + + +IA + L +
Sbjct: 105 RVYFDYDLRGKVVLSSFNALGVDYYNFSSKLIKDTELIASANKLGLLSRIW 155
>gnl|CDD|225092 COG2181, NarI, Nitrate reductase gamma subunit [Energy production
and conversion].
Length = 228
Score = 27.7 bits (62), Expect = 9.7
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 255 LGKLSGSLRLFGNTLIIISVLTTRRLRTVTNC---FVMSLAVADWLVGIFVMPF 305
LG ++G L L G TL+++ L R+R + F + L +A L+G++ PF
Sbjct: 92 LGGIAGVLTLIGLTLLLLRRLFDPRVRATSTPSDIFALLLLLAQLLLGLYATPF 145
>gnl|CDD|239895 cd04448, DEP_PIKfyve, DEP (Dishevelled, Egl-10, and Pleckstrin)
domain found in fungal RhoGEF (GDP/GTP exchange factor)
PIKfyve-like proteins. PIKfyve contains N-terminal Fyve
finger and DEP domains, a central chaperonin-like domain
and a C-terminal PIPK (phosphatidylinositol phosphate
kinase) domain. PIKfyve-like proteins are important
phosphatidylinositol (3)-monophosphate
(PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which
plays a major role in multivesicular body (MVB) sorting
and control of retrograde traffic from the vacuole back
to the endosome and/or Golgi. PIKfyve itself has been
shown to be play a role in regulating
early-endosome-to-trans-Golgi network (TGN) retrograde
trafficking.
Length = 81
Score = 25.9 bits (57), Expect = 9.8
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 279 RLRTVTNCFVMSLAVADWLV 298
RLRT TNC + V +WL+
Sbjct: 21 RLRTYTNCILGKELV-NWLI 39
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.138 0.443
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,319,345
Number of extensions: 1756480
Number of successful extensions: 2067
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2058
Number of HSP's successfully gapped: 59
Length of query: 366
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 268
Effective length of database: 6,590,910
Effective search space: 1766363880
Effective search space used: 1766363880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (26.8 bits)