RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6269
(366 letters)
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 190 bits (483), Expect = 1e-56
Identities = 67/305 (21%), Positives = 104/305 (34%), Gaps = 51/305 (16%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
+ C + L +SI SL AI+IDRY+A+ PL Y+ + A +I
Sbjct: 95 FCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGL-VTGTRAKGIIAIC 153
Query: 62 WVLALVITCPPILGWYDKDRHRDKRCGYNQ---------------NRGYVVFSGMGSFFI 106
WVL+ I P+LGW + + ++ + V F+ +
Sbjct: 154 WVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLV 213
Query: 107 PLLVVLYVYARISCVIARRHNNLEALNHQHTLGR-----------HELAKIKLRVRFNYC 155
PLL++L VY RI R+ +LE + A K+R
Sbjct: 214 PLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDA 273
Query: 156 KVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVS------------ 203
+ K P S M+ R L K
Sbjct: 274 QKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNA 333
Query: 204 -----------SLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPL-LSNS 251
+L++E A++L+++VG F CWLP I+ F P + +PL L
Sbjct: 334 YIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYL 393
Query: 252 LTWLG 256
L
Sbjct: 394 AIVLS 398
Score = 80.5 bits (198), Expect = 8e-17
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVAL 309
+ GN L+ +V L+ VTN FV+SLA AD VG+ +PFA+ +
Sbjct: 46 ILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI 91
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 188 bits (480), Expect = 1e-55
Identities = 63/263 (23%), Positives = 105/263 (39%), Gaps = 54/263 (20%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG C+ W S+DV TASI +LC I++DRY A+T P Y +K A +IL V
Sbjct: 248 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSL-LTKNKARVIILMV 306
Query: 62 WVLALVITCPPI-LGWYDKDRHRDKR-------CGYNQNRGYVVFSGMGSFFIPLLVVLY 113
W+++ + + PI + WY C + N+ Y + S + SF++PL+++++
Sbjct: 307 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 366
Query: 114 VYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIM 173
VY+R+ A+R + + + + +
Sbjct: 367 VYSRVFQE-AKRQ-----------------LQKIDKSEGRFHVQNLSQVEQDGRTGH--- 405
Query: 174 ERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVY 233
+E K +TL +++G F CWLPFFIV
Sbjct: 406 -----------------------GLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVN 442
Query: 234 LANPFLPAGTISPLLSNSLTWLG 256
+ + I + L W+G
Sbjct: 443 IVHVIQDN-LIRKEVYILLNWIG 464
Score = 80.7 bits (199), Expect = 7e-17
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
+FGN L+I ++ RL+TVTN F+ SLA AD ++G+ V+PF A +T
Sbjct: 197 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 245
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 177 bits (450), Expect = 1e-51
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W G ++CD+W++LD + AS+++L IS DRY VT+PLTY K R+ K+A MI
Sbjct: 89 WPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVK-RTTKMAGMMIAAA 147
Query: 62 WVLALVITCPPILGWYDKDRHRDKR-----CGYNQNRGYVVFSGMGSFFIPLLVVLYVYA 116
WVL+ ++ P IL W R + N + + +F++P++++ +Y
Sbjct: 148 WVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYW 207
Query: 117 RISCVIARRHNNLEALNHQHTL 138
IS R N E L L
Sbjct: 208 HISRASKSRINIFEMLRIDEGL 229
Score = 79.0 bits (194), Expect = 3e-16
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
+ GN L+++S+ R L+TV N F+ SLA AD ++G+F M +
Sbjct: 38 IIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVI 86
Score = 57.4 bits (138), Expect = 3e-09
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 168 PSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWL 227
+++ R + + + + T RE K +T+ ++ FI W
Sbjct: 343 DEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWA 402
Query: 228 PFFIVYLANPFLPAGTISPLLSNSLTWLG 256
P+ ++ L N F I + WL
Sbjct: 403 PYNVMVLINTFCAP-CIPNTVWTIGYWLC 430
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 172 bits (438), Expect = 1e-49
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 11/225 (4%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG C+ W S+DV TASI +LC I++DRY A+T P Y +K A +IL V
Sbjct: 106 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSL-LTKNKARVIILMV 164
Query: 62 WVLALVITCPPI-LGWYDKDRHR-------DKRCGYNQNRGYVVFSGMGSFFIPLLVVLY 113
W+++ + + PI + WY + C + N+ Y + S + SF++PL+++++
Sbjct: 165 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 224
Query: 114 VYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIM 173
VY+R+ R+ N E L L + + + K+ + + S +
Sbjct: 225 VYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHL--LTKSPSLNAAKSEL 282
Query: 174 ERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVV 218
++ ++ + L D V + R +K +
Sbjct: 283 DKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSL 327
Score = 81.3 bits (200), Expect = 5e-17
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
+FGN L+I ++ RL+TVTN F+ SLA AD ++G+ V+PF A +
Sbjct: 55 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 103
Score = 60.1 bits (145), Expect = 4e-10
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 168 PSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWL 227
+++ R + + + + T +E K +TL +++G F CWL
Sbjct: 363 DEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWL 422
Query: 228 PFFIVYLANPFLPAGTISPLLSNSLTWLG 256
PFFIV + + I + L W+G
Sbjct: 423 PFFIVNIVHVIQDN-LIRKEVYILLNWIG 450
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 170 bits (432), Expect = 3e-49
Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W G LC W+S+D TASI S+ + IDRY +V QPL Y + R+K A IL
Sbjct: 74 WSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKY-RTKTRASATILGA 132
Query: 62 WVLALVITCPPILGWYDKDRHRDKR------CGYNQNRGYVVFSGMGSFFIPLLVVLYVY 115
W L+ + PILGW + R + + V + + +F++P L++L+ Y
Sbjct: 133 WFLSFLW-VIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFY 191
Query: 116 ARISCVIARRHNNLEALNHQH 136
A+I + + N E L
Sbjct: 192 AKIYKAVRQHCNIFEMLRIDE 212
Score = 79.4 bits (195), Expect = 2e-16
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFW 323
+ N L++ +V + R+L TV N +++SL+VAD +VG VMP + + + W
Sbjct: 23 VGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM--------SKW 74
Query: 324 RLTLKHCN 331
L C
Sbjct: 75 SLGRPLCL 82
Score = 53.9 bits (129), Expect = 4e-08
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 183 SCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAG 242
+ + + + T + RE K A+ L ++ FI CW+P+FI ++ F
Sbjct: 343 TPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKN- 401
Query: 243 TISPLLSNSLTWLG 256
+ L WLG
Sbjct: 402 CCNEHLHMFTIWLG 415
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 164 bits (417), Expect = 8e-47
Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 5/211 (2%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKT--RSKKLALYMIL 59
W F I CD++V+LDV +CTASI +LCAISIDRY AV P+ Y T S + MI
Sbjct: 105 WNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMIT 164
Query: 60 CVWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARIS 119
VWVLA ++CP + G+ C + N +V++S + SF++P V + VYARI
Sbjct: 165 AVWVLAFAVSCPLLFGFNTTG--DPTVCSIS-NPDFVIYSSVVSFYLPFGVTVLVYARIY 221
Query: 120 CVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRK 179
V+ +R + G + ++ K+ + + S +++ +
Sbjct: 222 VVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR 281
Query: 180 SLASCSFSLQRSGLRLTDKCTRVSSLKRESK 210
+ + L D V + R +K
Sbjct: 282 NTNGVITKDEAEKLFNQDVDAAVRGILRNAK 312
Score = 80.6 bits (198), Expect = 9e-17
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFW 323
+FGN L+ ++VL R L+T TN V+SLAVAD LV VMP+ V L +T W
Sbjct: 53 VFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVT-------GGVW 105
Query: 324 RLTLKHCN 331
+ C+
Sbjct: 106 NFSRICCD 113
Score = 59.4 bits (143), Expect = 6e-10
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 168 PSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWL 227
+++ R + + + + T RE K Q +++V+G FI CWL
Sbjct: 356 DEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWL 415
Query: 228 PFFIVYLANPFLPAGTISPLLSNSLTWLG 256
PFF+ ++ N +SP L ++ TWLG
Sbjct: 416 PFFLTHVLNTHCQTCHVSPELYSATTWLG 444
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 161 bits (408), Expect = 2e-45
Identities = 48/230 (20%), Positives = 83/230 (36%), Gaps = 18/230 (7%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
+ C + L +SI SL AI+IDRY+A+ PL Y+ + A +I
Sbjct: 85 FCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGL-VTGTRAKGIIAIC 143
Query: 62 WVLALVITCPPILGWYDKDRHRDKRCGYNQNRG---------------YVVFSGMGSFFI 106
WVL+ I P+LGW + + ++ + V F+ +
Sbjct: 144 WVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLV 203
Query: 107 PLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLV 166
PLL++L VY RI R+ N E L L + + + K+ +
Sbjct: 204 PLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHL--LTKSPSL 261
Query: 167 LPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLS 216
+ S +++ ++ + L D V + R +K
Sbjct: 262 NAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYD 311
Score = 80.2 bits (197), Expect = 9e-17
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVP 314
+ GN L+ +V L+ VTN FV+SLA AD VG+ +PFA+ +
Sbjct: 36 ILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFC 86
Score = 57.4 bits (138), Expect = 3e-09
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Query: 169 SSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLP 228
++ + + R + + R S+L++E A++L+++VG F CWLP
Sbjct: 351 AAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLP 410
Query: 229 FFIVYLANPFLPAGT-ISPLLSNSLTWLG 256
I+ F P + L L
Sbjct: 411 LHIINCFTFFCPDCSHAPLWLMYLAIVLS 439
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 149 bits (377), Expect = 2e-42
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 9/143 (6%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W +G LC++W SLDV TASI +LC I+IDRYLA+T P Y ++ A +I V
Sbjct: 77 WLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSL-MTRARAKVIICTV 135
Query: 62 WVLALVITCPPI-LGWYDKDRHRDKR-------CGYNQNRGYVVFSGMGSFFIPLLVVLY 113
W ++ +++ PI + W+ + + + C + NR Y + S + SF+IPLL++++
Sbjct: 136 WAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIF 195
Query: 114 VYARISCVIARRHNNLEALNHQH 136
V R+ + ++ + +
Sbjct: 196 VALRVYREAKEQIRKIDRASKRK 218
Score = 78.6 bits (194), Expect = 1e-16
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
+ GN L+I ++ +T+RL+T+TN F+ SLA AD +VG+ V+PF L +
Sbjct: 26 VAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
Score = 54.0 bits (130), Expect = 2e-08
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 199 CTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLG 256
T L RE K +TL +++G F CWLPFF+V + N F + L + WLG
Sbjct: 218 KTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRD-LVPDWLFVAFNWLG 274
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 124 bits (313), Expect = 6e-32
Identities = 34/217 (15%), Positives = 80/217 (36%), Gaps = 7/217 (3%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
+++ + +AS+ SL AI+I+RY+ + + ++ + +I
Sbjct: 127 TYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFR--LFLLISA 184
Query: 61 VWVLALVITCPPILGWYDKDRHRD-KRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARIS 119
WV++L++ PI+GW ++ Y++F F + LL ++ +Y RI
Sbjct: 185 CWVISLILGGLPIMGWNCISALSSCSTVLPLYHKHYILFCTT-VFTLLLLSIVILYCRIY 243
Query: 120 CVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRK 179
++ R+ + G + ++ K+ + + S +++ +
Sbjct: 244 SLVRTRNIF---EMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR 300
Query: 180 SLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLS 216
+ + L D V + R +K
Sbjct: 301 NTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYD 337
Score = 68.4 bits (166), Expect = 9e-13
Identities = 11/64 (17%), Positives = 26/64 (40%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFW 323
+ N +++++ T++ F+ +LA++D L G+ + T + F
Sbjct: 78 ILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYKLTPAQWFL 137
Query: 324 RLTL 327
R
Sbjct: 138 REGS 141
Score = 49.5 bits (117), Expect = 9e-07
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 204 SLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPL-LSNSLTWLG 256
+T+ +V+ FIACW P FI+ L + T L + L
Sbjct: 412 RSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLA 465
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 109 bits (273), Expect = 1e-26
Identities = 54/266 (20%), Positives = 93/266 (34%), Gaps = 67/266 (25%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
W FG+ C ++ + SI+++ ISIDRY + +P+ S+K S + A MI+ V
Sbjct: 101 WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKK-MSHRRAFIMIIFV 159
Query: 62 WVLALVITCPPILGW--YDKDRHRDKRCGYN------QNRGYVVFSGMGSFFIPLLVVLY 113
W+ +++ PI GW Y + C ++ R ++ + FF P+L++ +
Sbjct: 160 WLWSVLWAIGPIFGWGAYTLEGVL-CNCSFDYISRDSTTRSNILCMFILGFFGPILIIFF 218
Query: 114 VYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIM 173
Y I + H +AK
Sbjct: 219 CYFNIVMSV-----------SNHEKEMAAMAK---------------------------- 239
Query: 174 ERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVY 233
R K L + E + A+ V+V F+ W P+ +V
Sbjct: 240 -RLNAKELRKAQ-----------------AGANAEMRLAKISIVIVSQFLLSWSPYAVVA 281
Query: 234 LANPFLPAGTISPLLSNSLTWLGKLS 259
L F P ++P + K S
Sbjct: 282 LLAQFGPLEWVTPYAAQLPVMFAKAS 307
Score = 51.5 bits (123), Expect = 2e-07
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 260 GSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIF-VMPFAVA 308
G + GN ++I T+ L+T N F+++LA +D+ + P
Sbjct: 45 GIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTI 94
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 95.1 bits (236), Expect = 1e-21
Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 16/192 (8%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
+W FG ILC I +S+D SI +LC +S+DRY+AV P+ + R+ + A + +C
Sbjct: 81 TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVK-ALDFRTPRNAKIVNVC 139
Query: 61 VWVLALVITCPPILGWYDKDRHRDKRCGYN-------QNRGYVVFSGMGSFFIPLLVVLY 113
W+L+ I P + K R C + + +F +P+L++
Sbjct: 140 NWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITV 199
Query: 114 VYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIM 173
Y + + N E ++L++ N I HL+ S S+
Sbjct: 200 CYGLMILRLKSVRNIFEM--------LRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPSLN 251
Query: 174 ERDRRKSLASCS 185
A
Sbjct: 252 AAKSELDKAIGR 263
Score = 46.9 bits (111), Expect = 6e-06
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
LFGN L++ ++ +++T TN ++ +LA+AD + +PF ++
Sbjct: 32 LFGNFLVMYVIVRYTKMKTATNIYIFNLALAD-ALATSTLPFQSVNYLM 79
Score = 30.4 bits (68), Expect = 1.0
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 206 KRESKTAQTLSVVVGGFIACWLPFFIVYLANPF 238
+ + + + VVV FI CW P I +
Sbjct: 376 RNLRRITRMVLVVVAVFIVCWTPIHIYVIIKAL 408
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 92.5 bits (230), Expect = 3e-21
Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
+ FG C++ ++ SL ++I+RY+ V +P++ R A+ +
Sbjct: 104 FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE--NHAIMGVAFT 161
Query: 62 WVLALVITCPPILGW--YDKDRHRDKRCGYN--------QNRGYVVFSGMGSFFIPLLVV 111
WV+AL PP++GW Y + + CG + N +V++ + F IPL+V+
Sbjct: 162 WVMALACAAPPLVGWSRYIPEGMQCS-CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVI 220
Query: 112 LYVYARISCVIARR 125
+ Y ++ +
Sbjct: 221 FFCYGQLVFTVKEA 234
Score = 54.3 bits (131), Expect = 2e-08
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVA 308
N L + + ++LRT N +++LAVAD + +
Sbjct: 53 FPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLY 97
Score = 40.4 bits (95), Expect = 6e-04
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 203 SSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLS 259
++ K E + + + ++V F+ CWLP+ V P+ + K S
Sbjct: 243 TTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTS 299
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 86.6 bits (215), Expect = 3e-19
Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
W +G C + ASI S+ A++ DRY+A+ PL + S +I
Sbjct: 97 EWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL---QPRLSATATKVVICV 153
Query: 61 VWVLALVITCPPILGWYDKDRHRDKRC--------GYNQNRGYVVFSGMGSFFIPLLVVL 112
+WVLAL++ P + C + Y + + +F+PLLV+
Sbjct: 154 IWVLALLLAFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIG 213
Query: 113 YVYARISCVIARRHNNLEALNHQHTLGR 140
Y Y + + ++ + H
Sbjct: 214 YAYTVVGITLWASEIPGDSSDRYHEQVS 241
Score = 61.2 bits (149), Expect = 1e-10
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
+ GN +++ +L +R+RTVTN F+++LA A+ + F +
Sbjct: 47 VVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVH 95
Score = 38.1 bits (89), Expect = 0.003
Identities = 15/53 (28%), Positives = 21/53 (39%)
Query: 188 LQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLP 240
L S + + + K + + VVV F CWLPF I +L P
Sbjct: 223 LWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINP 275
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 84.9 bits (210), Expect = 2e-18
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 8/147 (5%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
W FG LC +++D S +L A+S+DRY+A+ P+ + R+ A + +
Sbjct: 189 FWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPI-RALDVRTSSKAQAVNVA 247
Query: 61 VWVLALVITCPPILGWYDKDRHRDKRCGYN-------QNRGYVVFSGMGSFFIPLLVVLY 113
+W LA V+ P + + + C + + + SF +P+LV+
Sbjct: 248 IWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISV 307
Query: 114 VYARISCVIARRHNNLEALNHQHTLGR 140
Y+ + + + L R
Sbjct: 308 CYSLMIRRLRGVRLLSGSREKDRNLRR 334
Score = 50.6 bits (121), Expect = 4e-07
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
L GN L++ +L +++T TN ++ +LA+AD LV + +PF +
Sbjct: 140 LLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILL 187
Score = 34.8 bits (80), Expect = 0.044
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 206 KRESKTAQTLSVVVGGFIACWLPFFIVYLANPF 238
+ + + + VVV F+ CW P + LA
Sbjct: 330 RNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGL 362
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 84.6 bits (209), Expect = 4e-18
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 6/133 (4%)
Query: 1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
+W FG LC + +S+ L IS+DRYLA+ T S++ R + +
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHA-TNSQRPRKLLAEKVVYVG 169
Query: 61 VWVLALVITCPPILGWYDKDRHRDKRCG--YNQNRGYVVFSGMG---SFFIPLLVVLYVY 115
VW+ AL++T P + + C Y + VVF +P +V+L Y
Sbjct: 170 VWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCY 229
Query: 116 ARISCVIARRHNN 128
I ++ +N
Sbjct: 230 CIIISKLSHSGSN 242
Score = 44.1 bits (104), Expect = 5e-05
Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPF 305
+ GN L+I+ + ++LR++T+ + + L+VAD L + +PF
Sbjct: 63 IVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPF 103
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane
protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A
1ho9_A 1hod_A
Length = 32
Score = 49.3 bits (118), Expect = 1e-08
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 21 TASILSLCAISIDRYLAVTQPLTYSRKTRSKK 52
T+SI+ LCAIS+DRY ++TQ + Y+ K ++
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 66/390 (16%), Positives = 111/390 (28%), Gaps = 125/390 (32%)
Query: 21 TASILSLCAISIDR-YL------AVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPI 73
+L+LC + YL A+ L T K +I ++ A ++ P
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK-TKELIKN-YITARIMAKRPF 137
Query: 74 LGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPL--LVVLY-VY-ARISCVIARRHNNL 129
+ R G + +F G G+ L LY Y + +I L
Sbjct: 138 DKKSNSALFRAVGEG--NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 130 EALNHQHTLGRHELAKIKLRVRFNYCKVIIIK---KTHLVLPSSSIMERDRRKSLASCSF 186
EL + L + + + I + P L S
Sbjct: 196 S-----------ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY--------LLSIPI 236
Query: 187 SL---------------QRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIAC---W-- 226
S + G + + + T + +V IA W
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-----TGHSQGLVTAVAIAETDSWES 291
Query: 227 ----------LPFFI---VYLANP--FLPA-----------GTISPLLS-NSLTWLGKLS 259
+ FFI Y A P LP G SP+LS ++LT ++
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT-QEQVQ 350
Query: 260 GSLRLFGNTL-----IIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVP 314
+ + L + IS++ + V+S G P P
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAK------NLVVS--------G----P---------P 383
Query: 315 RSDFRLAFWRLTLK---HCNKSRRTRAQRA 341
+S + L K ++SR ++R
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.27
Identities = 43/319 (13%), Positives = 79/319 (24%), Gaps = 88/319 (27%)
Query: 91 QNRGYVVFSGMGSFFIPLLV--VLYVYARISCV--------IARRH------NNLEALNH 134
+ V+ G+ + V Y + + + L+ L +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 135 QHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLR 194
Q + ++ I + L + + L L
Sbjct: 208 QIDPNWTSRSDHSSNIKLR-IHSIQAELRRL------LKSKPYENCL-----------LV 249
Query: 195 LTD------------KC-----TRVSS----LKRESKTAQTLSVVVGGFI-ACWLPFFIV 232
L + C TR L + T +L +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 233 YLANPF--LP--AGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFV 288
YL LP T +P L ++ S+R T + +L T+ +
Sbjct: 310 YLDCRPQDLPREVLTTNPRR------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 289 MSLAVAD-----WLVGIFVMPFAVALHITVPRSDFRLA-FWRLTLKHCNKSRRTRAQRAH 342
L A+ + +F P + HI L+ W + +
Sbjct: 364 NVLEPAEYRKMFDRLSVF--PPSA--HIPTI----LLSLIW------FDVIKSD--VMVV 407
Query: 343 MNMLDSSCRMRKQQNNVTY 361
+N L + KQ T
Sbjct: 408 VNKLHKYSLVEKQPKESTI 426
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.86
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 255 LGKLSGSLRLF 265
L KL SL+L+
Sbjct: 22 LKKLQASLKLY 32
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled,
acetylation, alternative splic apoptosis, coiled coil,
cytoplasm; 2.80A {Homo sapiens}
Length = 65
Score = 27.7 bits (61), Expect = 1.2
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 112 LYVYARISCV----IARRHNNLEALNHQHTLGRHELAKIKLRVR 151
L V+ I V + H L HQ L R + ++ RV
Sbjct: 15 LRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVV 58
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 27.5 bits (61), Expect = 2.8
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 278 RRLRTVTNCFVMSLAVADWLV 298
+ + NCF AV DWL
Sbjct: 32 QHFKKYGNCFTAGEAV-DWLY 51
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell
juncti cytoplasmic vesicle, membrane, phosphoprotein;
HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Length = 109
Score = 27.0 bits (60), Expect = 4.1
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 44 YSRKTRSKKLALYMILCVWVLALVITCPPILG 75
Y K R KK+ + + + + + T I G
Sbjct: 78 YQSKARRKKIMIIICCVILGIIIASTIGGIFG 109
>1c17_M ATP synthase subunit A; membrane protein, helix, complex; NMR
{Escherichia coli} SCOP: f.18.1.1
Length = 177
Score = 27.6 bits (62), Expect = 5.0
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 17/97 (17%)
Query: 215 LSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLS--NSLTWLGK-LSGSLRLFGNTL-- 269
+ ++ + F L P+ ++ L K +S LRLFGN
Sbjct: 65 ILILFYSIKMKGIGGFTKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAG 124
Query: 270 -IIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPF 305
+I ++ + + W++ + F
Sbjct: 125 ELIFILI-----------AGLLPWWSQWILNVPWAIF 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.138 0.443
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,513,883
Number of extensions: 316281
Number of successful extensions: 611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 68
Length of query: 366
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,049,298
Effective search space: 1097359758
Effective search space used: 1097359758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.6 bits)