RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6269
         (366 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFA 306
              N L +   +  ++LRT  N  +++LAVAD  +        
Sbjct: 52  FPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTT 94



 Score = 34.2 bits (77), Expect = 0.023
 Identities = 12/57 (21%), Positives = 21/57 (36%)

Query: 206 KRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSL 262
           K E +  + + ++V  F+ CWLP+  V             P+      +  K S   
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVY 301


>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit,
           IlvH {Thermotoga maritima [TaxId: 2336]}
          Length = 78

 Score = 24.9 bits (55), Expect = 4.2
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 114 VYARISCVIARRHNNLEALN 133
           V  +++ + ARR  N+ ++ 
Sbjct: 16  VMRKVANLFARRGFNISSIT 35


>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit,
           IlvH {Escherichia coli [TaxId: 562]}
          Length = 76

 Score = 24.6 bits (54), Expect = 6.2
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 114 VYARISCVIARRHNNLEALN 133
             +R+  + ++R  N+E+L 
Sbjct: 14  ALSRVIGLFSQRGYNIESLT 33


>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit,
           IlvH {Nitrosomonas europaea [TaxId: 915]}
          Length = 77

 Score = 24.2 bits (53), Expect = 9.7
 Identities = 5/20 (25%), Positives = 13/20 (65%)

Query: 114 VYARISCVIARRHNNLEALN 133
             +R++ + + R  N+E+L+
Sbjct: 15  ALSRVAGLFSARGYNIESLS 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.138    0.443 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,353,809
Number of extensions: 59781
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 14
Length of query: 366
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 279
Effective length of database: 1,213,086
Effective search space: 338450994
Effective search space used: 338450994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.4 bits)