BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy627
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 68/89 (76%)
Query: 1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
MQSG +N W ++FDTRERWENPLMGW ST DPLSNL L FS+KEDA+ + +KNGW F
Sbjct: 87 MQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSNLVLTFSTKEDAVAFAEKNGWSFD 146
Query: 61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
VEE K PK KSY NFSWNKRTR STK
Sbjct: 147 VEERKVPKPKSKSYGANFSWNKRTRVSTK 175
>sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1
Length = 175
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 68/89 (76%)
Query: 1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
MQSG +N W ++FDTRERWENPLMGW ST DPLSNL L FS+KEDA+ + +KNGW +
Sbjct: 87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNLVLTFSTKEDAVAFAEKNGWSYD 146
Query: 61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
VEE K PK KSY NFSWNKRTR STK
Sbjct: 147 VEERKVPKPKSKSYGANFSWNKRTRVSTK 175
>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1
Length = 175
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 68/89 (76%)
Query: 1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
MQSG +N W ++FDTRERWENPLMGW ST DPLSN+ L FS+KEDA+ + +KNGW +
Sbjct: 87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSTKEDAVSFAEKNGWSYD 146
Query: 61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
+EE K PK KSY NFSWNKRTR STK
Sbjct: 147 IEERKVPKPKSKSYGANFSWNKRTRVSTK 175
>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2
SV=1
Length = 175
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 68/89 (76%)
Query: 1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
MQSG +N W ++FDTRERWENPLMGW ST DPLSN+ L FS+KEDA+ + +KNGW +
Sbjct: 87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSTKEDAVSFAEKNGWSYD 146
Query: 61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
+EE K PK KSY NFSWNKRTR STK
Sbjct: 147 IEERKVPKPKSKSYGANFSWNKRTRVSTK 175
>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 67/89 (75%)
Query: 1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
MQSG +N W ++FDTRERWENPLMGW ST DPLSN+ L F +KEDA+ + +KNGW +
Sbjct: 87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFRTKEDAVSFAEKNGWSYD 146
Query: 61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
VEE K PK KSY NFSWNKRTR STK
Sbjct: 147 VEERKVPKPKSKSYGANFSWNKRTRVSTK 175
>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 67/89 (75%)
Query: 1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
MQSG +N W ++FDTRERWENPLMGW ST DPLSN+ L F +KEDA+ + +KNGW +
Sbjct: 87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFRTKEDAVSFAEKNGWSYD 146
Query: 61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
VEE K PK KSY NFSWNKRTR STK
Sbjct: 147 VEERKVPKPKSKSYGANFSWNKRTRVSTK 175
>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 67/89 (75%)
Query: 1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
MQSG +N W ++FDTRERWENPLMGW ST DPLSN+ L S+KEDA+ + +KNGW +
Sbjct: 87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTXSTKEDAVSFAEKNGWSYD 146
Query: 61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
+EE K PK KSY NFSWNKRTR STK
Sbjct: 147 IEERKVPKPKSKSYGANFSWNKRTRVSTK 175
>sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1
Length = 175
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 67/89 (75%)
Query: 1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
MQSG +N W ++FDTRERWENPLMGW ST DPLSN+ L FS+KEDA+ + +K+GW +
Sbjct: 87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSAKEDAVAFAEKHGWSYD 146
Query: 61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
VE K PK KSY NFSWNKRTR STK
Sbjct: 147 VEGRKVPKPKSKSYGANFSWNKRTRVSTK 175
>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3
Length = 175
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 68/89 (76%)
Query: 1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
MQSG +N W ++FDTRERWENPLMGW ST DPLSN+ L FS+KEDAI + +KNGW +
Sbjct: 87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSAKEDAIAFAEKNGWSYD 146
Query: 61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
VEE K PK KSY NFSWNKRTR STK
Sbjct: 147 VEEKKVPKPKSKSYGANFSWNKRTRVSTK 175
>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1
Length = 154
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 2 QSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNL---ALNFSSKEDAIQYCQKNGWK 58
QSG+ W I F + +WENPLMGW STGDP +N+ AL F S+E A + +++GW
Sbjct: 65 QSGSGKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWD 124
Query: 59 FFVEEPKWKTPKVKSYAFNFSW 80
+ V++P KVKSY+ NF W
Sbjct: 125 YKVKKPNTPLLKVKSYSDNFKW 146
>sp|P25711|NDUS4_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-21 PE=1 SV=2
Length = 218
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 11 WFIQFDTRE---RWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPKWK 67
W + +D E RWEN LMGW S+GD + L F +KE+AIQ+ +K G+++FV+EP +
Sbjct: 135 WRMDWDVLEKGHRWENELMGWQSSGDFVQGTHLTFRTKEEAIQFAEKQGYEYFVQEPNQR 194
Query: 68 TPKVKSYAFNFSWNKR 83
K+YA NF ++ +
Sbjct: 195 HFTPKAYANNFLYSPK 210
>sp|Q8T1V6|NDUS4_DICDI NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Dictyostelium discoideum GN=ndufs4 PE=3
SV=2
Length = 190
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
MQ+GT W I+ +W + LMGW ++ D L+ L L F+S+ DA+ YC++ G +
Sbjct: 96 MQTGTLRTKKWVIELPFNPKWNDRLMGWWASKDTLNQLNLRFNSETDAVAYCKEIGLNYN 155
Query: 61 VEEPKWKTPKVKSYAFNFSW 80
+ E K K Y F +
Sbjct: 156 IVEEDVTLRKKKKYGHRFRY 175
>sp|Q30RK2|LEU3_SULDN 3-isopropylmalate dehydrogenase OS=Sulfurimonas denitrificans
(strain ATCC 33889 / DSM 1251) GN=leuB PE=3 SV=1
Length = 355
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 16 DTRERWENPLMGWCS---TGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPKWKTPK 70
D +E LMG C+ TGDPL +N S DA+ + G K + P+ K P+
Sbjct: 34 DLEFSYEEALMGGCAYDITGDPLPQETINISLNSDAVLFGAIGGAK-WDNLPREKRPE 90
>sp|Q9PMT4|GLMS_CAMJE Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=glmS PE=3 SV=3
Length = 598
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 24/91 (26%)
Query: 7 NANNWFIQFDTRERW-----ENPLMGWCSTGDPLSNLALNFSSKEDAI------------ 49
NA I + + W + PL+G C L +L+L ++SK++ +
Sbjct: 174 NAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKDELVVYENDILKSLCF 233
Query: 50 -------QYCQKNGWKFFVEEPKWKTPKVKS 73
Y +K+G++FF+E+ ++ +V S
Sbjct: 234 SKLSGDKAYAKKDGFRFFMEKEIYEQSRVMS 264
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.129 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,262,187
Number of Sequences: 539616
Number of extensions: 1287613
Number of successful extensions: 2387
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2372
Number of HSP's gapped (non-prelim): 16
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)